Multiple sequence alignment - TraesCS6A01G137900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G137900 | chr6A | 100.000 | 3425 | 0 | 0 | 3996 | 7420 | 109122224 | 109125648 | 0.000000e+00 | 6325.0 |
1 | TraesCS6A01G137900 | chr6A | 100.000 | 1772 | 0 | 0 | 1 | 1772 | 109118229 | 109120000 | 0.000000e+00 | 3273.0 |
2 | TraesCS6A01G137900 | chr6A | 100.000 | 1695 | 0 | 0 | 2050 | 3744 | 109120278 | 109121972 | 0.000000e+00 | 3131.0 |
3 | TraesCS6A01G137900 | chr6A | 86.765 | 68 | 6 | 3 | 121 | 187 | 581025572 | 581025637 | 1.030000e-08 | 73.1 |
4 | TraesCS6A01G137900 | chr6D | 95.997 | 1299 | 47 | 3 | 2132 | 3425 | 90882336 | 90883634 | 0.000000e+00 | 2106.0 |
5 | TraesCS6A01G137900 | chr6D | 94.428 | 1382 | 49 | 8 | 5147 | 6510 | 90890557 | 90891928 | 0.000000e+00 | 2100.0 |
6 | TraesCS6A01G137900 | chr6D | 92.809 | 1182 | 39 | 6 | 3996 | 5149 | 90888909 | 90890072 | 0.000000e+00 | 1670.0 |
7 | TraesCS6A01G137900 | chr6D | 90.827 | 883 | 47 | 14 | 812 | 1670 | 90881323 | 90882195 | 0.000000e+00 | 1151.0 |
8 | TraesCS6A01G137900 | chr6D | 90.665 | 782 | 56 | 7 | 1 | 771 | 90880549 | 90881324 | 0.000000e+00 | 1024.0 |
9 | TraesCS6A01G137900 | chr6D | 88.953 | 697 | 57 | 9 | 6734 | 7416 | 90892229 | 90892919 | 0.000000e+00 | 843.0 |
10 | TraesCS6A01G137900 | chr6D | 96.049 | 329 | 12 | 1 | 3416 | 3744 | 90888538 | 90888865 | 1.100000e-147 | 534.0 |
11 | TraesCS6A01G137900 | chr6D | 92.090 | 177 | 12 | 1 | 6508 | 6684 | 90891957 | 90892131 | 1.600000e-61 | 248.0 |
12 | TraesCS6A01G137900 | chr6B | 91.587 | 1367 | 61 | 27 | 5147 | 6510 | 173024422 | 173025737 | 0.000000e+00 | 1838.0 |
13 | TraesCS6A01G137900 | chr6B | 96.449 | 1070 | 27 | 4 | 2683 | 3744 | 173021851 | 173022917 | 0.000000e+00 | 1755.0 |
14 | TraesCS6A01G137900 | chr6B | 93.492 | 1137 | 29 | 8 | 3996 | 5105 | 173022961 | 173024079 | 0.000000e+00 | 1648.0 |
15 | TraesCS6A01G137900 | chr6B | 91.885 | 764 | 40 | 10 | 904 | 1651 | 173019844 | 173020601 | 0.000000e+00 | 1048.0 |
16 | TraesCS6A01G137900 | chr6B | 92.516 | 628 | 37 | 5 | 2054 | 2678 | 173020770 | 173021390 | 0.000000e+00 | 891.0 |
17 | TraesCS6A01G137900 | chr6B | 87.815 | 714 | 64 | 17 | 6716 | 7420 | 173025937 | 173026636 | 0.000000e+00 | 815.0 |
18 | TraesCS6A01G137900 | chr6B | 86.412 | 655 | 69 | 14 | 121 | 767 | 173018048 | 173018690 | 0.000000e+00 | 699.0 |
19 | TraesCS6A01G137900 | chr6B | 89.848 | 197 | 11 | 5 | 756 | 944 | 173019663 | 173019858 | 2.070000e-60 | 244.0 |
20 | TraesCS6A01G137900 | chr6B | 89.266 | 177 | 17 | 1 | 6508 | 6684 | 173025766 | 173025940 | 3.490000e-53 | 220.0 |
21 | TraesCS6A01G137900 | chr4D | 86.207 | 87 | 7 | 5 | 121 | 206 | 4377126 | 4377044 | 1.030000e-13 | 89.8 |
22 | TraesCS6A01G137900 | chr2D | 78.322 | 143 | 21 | 10 | 86 | 223 | 97229535 | 97229672 | 4.770000e-12 | 84.2 |
23 | TraesCS6A01G137900 | chr2B | 100.000 | 28 | 0 | 0 | 623 | 650 | 10793874 | 10793901 | 1.300000e-02 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G137900 | chr6A | 109118229 | 109125648 | 7419 | False | 4243.000000 | 6325 | 100.000000 | 1 | 7420 | 3 | chr6A.!!$F2 | 7419 |
1 | TraesCS6A01G137900 | chr6D | 90880549 | 90883634 | 3085 | False | 1427.000000 | 2106 | 92.496333 | 1 | 3425 | 3 | chr6D.!!$F1 | 3424 |
2 | TraesCS6A01G137900 | chr6D | 90888538 | 90892919 | 4381 | False | 1079.000000 | 2100 | 92.865800 | 3416 | 7416 | 5 | chr6D.!!$F2 | 4000 |
3 | TraesCS6A01G137900 | chr6B | 173018048 | 173026636 | 8588 | False | 1017.555556 | 1838 | 91.030000 | 121 | 7420 | 9 | chr6B.!!$F1 | 7299 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
951 | 1987 | 0.296642 | CTAATTTTCGCCGTCGACCG | 59.703 | 55.000 | 10.58 | 8.99 | 45.43 | 4.79 | F |
1404 | 2454 | 0.532573 | CTCCGCTCTAGCAGTTTCCA | 59.467 | 55.000 | 2.44 | 0.00 | 42.21 | 3.53 | F |
1405 | 2455 | 0.532573 | TCCGCTCTAGCAGTTTCCAG | 59.467 | 55.000 | 2.44 | 0.00 | 42.21 | 3.86 | F |
1443 | 2493 | 1.531365 | CTGTTTCCCTGCCTGGCAA | 60.531 | 57.895 | 23.51 | 4.95 | 38.41 | 4.52 | F |
2501 | 3606 | 1.303236 | CGACCATCACCCCAAAGCA | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 | F |
2653 | 3758 | 1.549037 | GGTTATGGGTGTGGGCTCAAA | 60.549 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 | F |
4499 | 6070 | 0.671781 | AGAAGTGCGTGCATGGACTC | 60.672 | 55.000 | 30.12 | 22.38 | 39.85 | 3.36 | F |
5724 | 7813 | 0.601558 | CTTGCAATGCTGGCTCTTGT | 59.398 | 50.000 | 6.82 | 0.00 | 0.00 | 3.16 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2406 | 3510 | 0.323629 | TTAACCAGGCAAGGACCTCG | 59.676 | 55.000 | 0.00 | 0.00 | 38.26 | 4.63 | R |
2488 | 3593 | 0.698238 | TGTAGCTGCTTTGGGGTGAT | 59.302 | 50.000 | 7.79 | 0.00 | 0.00 | 3.06 | R |
2501 | 3606 | 0.916358 | ATCCAGCCCCTTGTGTAGCT | 60.916 | 55.000 | 0.00 | 0.00 | 35.52 | 3.32 | R |
2653 | 3758 | 1.201429 | ATCACCCGAAGCCCAAGAGT | 61.201 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 | R |
4265 | 5836 | 1.138859 | CAAGTGAGATATCGGGGCACA | 59.861 | 52.381 | 17.21 | 3.95 | 32.16 | 4.57 | R |
4620 | 6191 | 1.003928 | TGCTGCAGTGATGTTGATCCT | 59.996 | 47.619 | 16.64 | 0.00 | 0.00 | 3.24 | R |
5922 | 8024 | 0.828762 | TTGCCACAGGAAGCAATGCT | 60.829 | 50.000 | 0.00 | 0.00 | 43.74 | 3.79 | R |
6777 | 8995 | 0.178990 | ATGAGCCGGGCTAAATTCCC | 60.179 | 55.000 | 23.92 | 8.17 | 39.88 | 3.97 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
191 | 193 | 9.364989 | TGTTCTTCATTTCGAAACAAATTTTCT | 57.635 | 25.926 | 13.81 | 0.00 | 31.71 | 2.52 |
255 | 258 | 9.180678 | CTTATGAATTTGTAAAAACTGCTCGTT | 57.819 | 29.630 | 0.00 | 0.00 | 37.47 | 3.85 |
350 | 354 | 5.859648 | TCACCAGTTCGAAAAGTTCAAAAAC | 59.140 | 36.000 | 0.00 | 0.00 | 35.50 | 2.43 |
353 | 357 | 5.288472 | CCAGTTCGAAAAGTTCAAAAACTGG | 59.712 | 40.000 | 20.71 | 20.71 | 45.07 | 4.00 |
442 | 446 | 9.942850 | AAGATAGAAAGGAAAGAAAGAGAAGAG | 57.057 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
449 | 453 | 6.303054 | AGGAAAGAAAGAGAAGAGGGAAAAG | 58.697 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
451 | 455 | 3.669536 | AGAAAGAGAAGAGGGAAAAGCG | 58.330 | 45.455 | 0.00 | 0.00 | 0.00 | 4.68 |
462 | 466 | 3.756963 | GAGGGAAAAGCGGAACAGTAAAT | 59.243 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
605 | 614 | 1.003355 | ATCTGACGCTGTTGGGGTG | 60.003 | 57.895 | 0.00 | 0.00 | 41.29 | 4.61 |
610 | 619 | 0.321298 | GACGCTGTTGGGGTGTGTAT | 60.321 | 55.000 | 0.00 | 0.00 | 41.29 | 2.29 |
611 | 620 | 0.605319 | ACGCTGTTGGGGTGTGTATG | 60.605 | 55.000 | 0.00 | 0.00 | 39.69 | 2.39 |
612 | 621 | 0.605319 | CGCTGTTGGGGTGTGTATGT | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
613 | 622 | 1.338294 | CGCTGTTGGGGTGTGTATGTA | 60.338 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
614 | 623 | 2.081462 | GCTGTTGGGGTGTGTATGTAC | 58.919 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
615 | 624 | 2.343101 | CTGTTGGGGTGTGTATGTACG | 58.657 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
784 | 1785 | 2.750350 | CCGTTTCCTGGCAGACCT | 59.250 | 61.111 | 17.94 | 0.00 | 36.63 | 3.85 |
812 | 1813 | 0.678684 | CCCGGCCCTTTTATTCGTGT | 60.679 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
863 | 1864 | 2.329614 | CCGGCCTTACAAACACGGG | 61.330 | 63.158 | 0.00 | 0.00 | 37.80 | 5.28 |
893 | 1894 | 3.506398 | CCAGGGTTGGGTAACAAAATCT | 58.494 | 45.455 | 0.00 | 0.00 | 41.58 | 2.40 |
925 | 1957 | 2.170817 | GACTAATTTTCGCCTCCCCTCT | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
928 | 1964 | 3.283259 | AATTTTCGCCTCCCCTCTAAG | 57.717 | 47.619 | 0.00 | 0.00 | 0.00 | 2.18 |
951 | 1987 | 0.296642 | CTAATTTTCGCCGTCGACCG | 59.703 | 55.000 | 10.58 | 8.99 | 45.43 | 4.79 |
1023 | 2059 | 2.124403 | GACCTCCGCCTCCGACTA | 60.124 | 66.667 | 0.00 | 0.00 | 36.29 | 2.59 |
1044 | 2080 | 1.908793 | CCAGACACAGAGGGTCCGT | 60.909 | 63.158 | 0.00 | 0.00 | 35.89 | 4.69 |
1073 | 2109 | 1.954362 | GCACTCCACGAGCTCCAGAT | 61.954 | 60.000 | 8.47 | 0.00 | 32.04 | 2.90 |
1081 | 2117 | 3.206211 | GAGCTCCAGATCCTCGCCG | 62.206 | 68.421 | 0.87 | 0.00 | 0.00 | 6.46 |
1186 | 2228 | 1.509548 | ATCCCCCTTCCCACCTGTTG | 61.510 | 60.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1188 | 2230 | 2.845345 | CCCCTTCCCACCTGTTGCT | 61.845 | 63.158 | 0.00 | 0.00 | 0.00 | 3.91 |
1209 | 2251 | 1.787847 | GCTCGTGTTTCGTGATGGG | 59.212 | 57.895 | 0.00 | 0.00 | 40.80 | 4.00 |
1213 | 2255 | 1.069513 | TCGTGTTTCGTGATGGGACTT | 59.930 | 47.619 | 0.00 | 0.00 | 40.80 | 3.01 |
1222 | 2264 | 3.640029 | TCGTGATGGGACTTATAGGGTTC | 59.360 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
1280 | 2330 | 1.126488 | ATGGCACGTCTGATCAGGAT | 58.874 | 50.000 | 22.42 | 5.72 | 0.00 | 3.24 |
1378 | 2428 | 2.741055 | GCTCTCTCCCTGCCTTCCC | 61.741 | 68.421 | 0.00 | 0.00 | 0.00 | 3.97 |
1395 | 2445 | 1.395826 | CCCCCTGTTCTCCGCTCTAG | 61.396 | 65.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1403 | 2453 | 0.818296 | TCTCCGCTCTAGCAGTTTCC | 59.182 | 55.000 | 2.44 | 0.00 | 42.21 | 3.13 |
1404 | 2454 | 0.532573 | CTCCGCTCTAGCAGTTTCCA | 59.467 | 55.000 | 2.44 | 0.00 | 42.21 | 3.53 |
1405 | 2455 | 0.532573 | TCCGCTCTAGCAGTTTCCAG | 59.467 | 55.000 | 2.44 | 0.00 | 42.21 | 3.86 |
1430 | 2480 | 4.984161 | CAGCGATTTGATTGGTTTCTGTTT | 59.016 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
1443 | 2493 | 1.531365 | CTGTTTCCCTGCCTGGCAA | 60.531 | 57.895 | 23.51 | 4.95 | 38.41 | 4.52 |
1449 | 2504 | 3.458163 | CCTGCCTGGCAATGCTGG | 61.458 | 66.667 | 23.51 | 15.85 | 38.41 | 4.85 |
1513 | 2568 | 6.324512 | AGCATGAATTGATTGGTTGGCTTATA | 59.675 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
1517 | 2572 | 8.815565 | TGAATTGATTGGTTGGCTTATACTTA | 57.184 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
1518 | 2573 | 9.420118 | TGAATTGATTGGTTGGCTTATACTTAT | 57.580 | 29.630 | 0.00 | 0.00 | 0.00 | 1.73 |
1572 | 2634 | 9.104965 | TGAAGTTTCATACTGAAATATTACGGG | 57.895 | 33.333 | 5.67 | 0.00 | 46.55 | 5.28 |
1608 | 2670 | 3.685550 | GCAGGGTGGTTATTATCTGTGCT | 60.686 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
1636 | 2698 | 6.570692 | TCGAACTCTAGATATTTGGGTTCAC | 58.429 | 40.000 | 15.15 | 0.00 | 33.50 | 3.18 |
1670 | 2738 | 9.337396 | TGTTATACTAATTGATTTACAGGGCAG | 57.663 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
1671 | 2739 | 8.784043 | GTTATACTAATTGATTTACAGGGCAGG | 58.216 | 37.037 | 0.00 | 0.00 | 0.00 | 4.85 |
1673 | 2741 | 3.756082 | AATTGATTTACAGGGCAGGGA | 57.244 | 42.857 | 0.00 | 0.00 | 0.00 | 4.20 |
1693 | 2780 | 4.058817 | GGAGTGCATTCTACCCTAATTCG | 58.941 | 47.826 | 9.27 | 0.00 | 0.00 | 3.34 |
1694 | 2781 | 4.443034 | GGAGTGCATTCTACCCTAATTCGT | 60.443 | 45.833 | 9.27 | 0.00 | 0.00 | 3.85 |
1702 | 2789 | 1.734163 | ACCCTAATTCGTTGAAGGCG | 58.266 | 50.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1724 | 2812 | 7.027161 | GGCGTAGTTGTTTGTTTGATTATCAT | 58.973 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
1726 | 2814 | 8.365210 | GCGTAGTTGTTTGTTTGATTATCATTG | 58.635 | 33.333 | 0.00 | 0.00 | 0.00 | 2.82 |
1728 | 2816 | 9.691362 | GTAGTTGTTTGTTTGATTATCATTGGT | 57.309 | 29.630 | 0.00 | 0.00 | 0.00 | 3.67 |
1729 | 2817 | 8.816640 | AGTTGTTTGTTTGATTATCATTGGTC | 57.183 | 30.769 | 0.00 | 0.00 | 0.00 | 4.02 |
1731 | 2819 | 8.702438 | GTTGTTTGTTTGATTATCATTGGTCTG | 58.298 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
1732 | 2820 | 7.950512 | TGTTTGTTTGATTATCATTGGTCTGT | 58.049 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
1733 | 2821 | 8.081633 | TGTTTGTTTGATTATCATTGGTCTGTC | 58.918 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
1734 | 2822 | 7.757941 | TTGTTTGATTATCATTGGTCTGTCA | 57.242 | 32.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1736 | 2824 | 8.352137 | TGTTTGATTATCATTGGTCTGTCAAT | 57.648 | 30.769 | 0.00 | 0.00 | 37.81 | 2.57 |
1765 | 2867 | 8.548877 | ACAGATGGTAAAAATAAGCCTTCTCTA | 58.451 | 33.333 | 0.00 | 0.00 | 34.56 | 2.43 |
1766 | 2868 | 9.050601 | CAGATGGTAAAAATAAGCCTTCTCTAG | 57.949 | 37.037 | 0.00 | 0.00 | 34.56 | 2.43 |
1767 | 2869 | 8.773216 | AGATGGTAAAAATAAGCCTTCTCTAGT | 58.227 | 33.333 | 0.00 | 0.00 | 32.29 | 2.57 |
1769 | 2871 | 9.833917 | ATGGTAAAAATAAGCCTTCTCTAGTAC | 57.166 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
1770 | 2872 | 8.262933 | TGGTAAAAATAAGCCTTCTCTAGTACC | 58.737 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
1771 | 2873 | 7.714377 | GGTAAAAATAAGCCTTCTCTAGTACCC | 59.286 | 40.741 | 0.00 | 0.00 | 0.00 | 3.69 |
2082 | 3184 | 7.591821 | AGGGGCCATTTGATTCTACTTTAATA | 58.408 | 34.615 | 4.39 | 0.00 | 0.00 | 0.98 |
2160 | 3264 | 5.414144 | GCTTAGCTCATTTTTCTCTTGGACT | 59.586 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2193 | 3297 | 2.158755 | AAGCCACAGAAAGGGGATATCG | 60.159 | 50.000 | 0.00 | 0.00 | 39.72 | 2.92 |
2219 | 3323 | 1.859427 | GCCGTGTCAGTGAGGTACGA | 61.859 | 60.000 | 20.03 | 0.00 | 36.94 | 3.43 |
2241 | 3345 | 3.118629 | AGCACTTTGTGTCACTCTCTCAA | 60.119 | 43.478 | 4.27 | 0.00 | 35.75 | 3.02 |
2252 | 3356 | 5.167845 | GTCACTCTCTCAATGTTCTTCTCC | 58.832 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
2273 | 3377 | 7.695055 | TCTCCTTTTTATAACATGGTTCCTGA | 58.305 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
2501 | 3606 | 1.303236 | CGACCATCACCCCAAAGCA | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 3.91 |
2525 | 3630 | 1.561542 | ACACAAGGGGCTGGATTCTAG | 59.438 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
2653 | 3758 | 1.549037 | GGTTATGGGTGTGGGCTCAAA | 60.549 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
2773 | 4342 | 3.654414 | AGGCTTGTACTTCGAACTCTTG | 58.346 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
2907 | 4476 | 7.331791 | AGTCTCAACTATTTTGTATGGGTCTC | 58.668 | 38.462 | 0.00 | 0.00 | 32.59 | 3.36 |
2913 | 4482 | 7.865706 | ACTATTTTGTATGGGTCTCATTGTC | 57.134 | 36.000 | 0.00 | 0.00 | 37.30 | 3.18 |
3066 | 4635 | 6.997655 | TGTATTCTATTCTGGCCAGTATCAG | 58.002 | 40.000 | 31.58 | 22.02 | 0.00 | 2.90 |
3119 | 4688 | 1.557269 | AAGCGCTGGAGGTTGGAGAT | 61.557 | 55.000 | 12.58 | 0.00 | 0.00 | 2.75 |
3296 | 4865 | 7.627293 | TGCATAATGGATATGGAGGGTAAGATA | 59.373 | 37.037 | 0.00 | 0.00 | 41.51 | 1.98 |
3425 | 4996 | 4.130118 | CAAACCACACTTTCTAGCTGACT | 58.870 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
3443 | 5014 | 5.779922 | CTGACTTAACAGTAGCTTGTACCA | 58.220 | 41.667 | 0.00 | 0.00 | 31.22 | 3.25 |
3729 | 5300 | 6.769341 | ACTGATGTTGATGAGCTTAATATGCA | 59.231 | 34.615 | 0.00 | 0.00 | 0.00 | 3.96 |
4216 | 5787 | 4.636206 | GGTTGAACCATCATTCTCACTACC | 59.364 | 45.833 | 9.98 | 0.00 | 38.42 | 3.18 |
4293 | 5864 | 4.442893 | CCCGATATCTCACTTGCTTGGTAA | 60.443 | 45.833 | 0.34 | 0.00 | 0.00 | 2.85 |
4320 | 5891 | 5.302823 | GGGTTCGGCTAGTAATAGAAGGTAA | 59.697 | 44.000 | 0.38 | 0.00 | 0.00 | 2.85 |
4414 | 5985 | 4.394920 | GTGACCAATATGTGTAGTTGTGGG | 59.605 | 45.833 | 0.00 | 0.00 | 0.00 | 4.61 |
4499 | 6070 | 0.671781 | AGAAGTGCGTGCATGGACTC | 60.672 | 55.000 | 30.12 | 22.38 | 39.85 | 3.36 |
4512 | 6083 | 1.808411 | TGGACTCGAAGTTGGCAATC | 58.192 | 50.000 | 1.92 | 0.00 | 0.00 | 2.67 |
4547 | 6118 | 4.246458 | GGGATGCAAATATAGGAGACGAC | 58.754 | 47.826 | 0.00 | 0.00 | 0.00 | 4.34 |
4620 | 6191 | 3.790416 | AAGCCAACTTGCGCCCTGA | 62.790 | 57.895 | 4.18 | 0.00 | 33.84 | 3.86 |
4665 | 6236 | 9.298774 | CACTTGGTAAAAACAAACCGTAATAAA | 57.701 | 29.630 | 0.00 | 0.00 | 38.70 | 1.40 |
4675 | 6246 | 3.975168 | ACCGTAATAAAGGAGCACAGT | 57.025 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
4684 | 6255 | 3.560636 | AAGGAGCACAGTACACAAAGT | 57.439 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
4810 | 6383 | 3.997021 | GACTGTAGAACCAACCTGTGATG | 59.003 | 47.826 | 0.00 | 0.00 | 0.00 | 3.07 |
4828 | 6401 | 7.297936 | TGTGATGAGGTCTTAACAGAAGTTA | 57.702 | 36.000 | 0.00 | 0.00 | 39.15 | 2.24 |
4935 | 6534 | 7.596749 | AACTGACAATAATAAAGACACGAGG | 57.403 | 36.000 | 0.00 | 0.00 | 0.00 | 4.63 |
5026 | 6625 | 9.766277 | TTGTGTTTTCTTCAAATTTTTGCATAC | 57.234 | 25.926 | 0.00 | 0.00 | 38.05 | 2.39 |
5028 | 6627 | 8.394121 | GTGTTTTCTTCAAATTTTTGCATACCA | 58.606 | 29.630 | 0.00 | 0.00 | 38.05 | 3.25 |
5032 | 6631 | 6.454795 | TCTTCAAATTTTTGCATACCAGGTC | 58.545 | 36.000 | 0.00 | 0.00 | 38.05 | 3.85 |
5192 | 7278 | 6.814146 | GCTCTGATGGCATAGTATTTAGTACC | 59.186 | 42.308 | 0.00 | 0.00 | 33.58 | 3.34 |
5219 | 7305 | 9.995003 | GGATCTCATGATGTAGAGAATTTAGTT | 57.005 | 33.333 | 0.00 | 0.00 | 43.47 | 2.24 |
5272 | 7358 | 0.898789 | TTCAGAGACGGGTCCCACTC | 60.899 | 60.000 | 19.00 | 19.00 | 0.00 | 3.51 |
5300 | 7386 | 4.766891 | ACCAGGATGTTTGTTCATTGGTAG | 59.233 | 41.667 | 0.00 | 0.00 | 37.24 | 3.18 |
5372 | 7458 | 5.888982 | TTCCTTAGGGGAGTTCATGATAC | 57.111 | 43.478 | 0.00 | 0.00 | 46.01 | 2.24 |
5376 | 7462 | 2.412591 | AGGGGAGTTCATGATACTGGG | 58.587 | 52.381 | 13.14 | 0.00 | 0.00 | 4.45 |
5378 | 7464 | 2.370189 | GGGGAGTTCATGATACTGGGAG | 59.630 | 54.545 | 13.14 | 0.00 | 0.00 | 4.30 |
5386 | 7472 | 7.118723 | AGTTCATGATACTGGGAGCATTTTTA | 58.881 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
5392 | 7478 | 3.092301 | ACTGGGAGCATTTTTAGGCTTC | 58.908 | 45.455 | 0.00 | 0.00 | 41.22 | 3.86 |
5399 | 7485 | 2.223044 | GCATTTTTAGGCTTCTCGTCCG | 60.223 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
5411 | 7497 | 4.031426 | GCTTCTCGTCCGTTACTATGTTTG | 59.969 | 45.833 | 0.00 | 0.00 | 0.00 | 2.93 |
5414 | 7500 | 5.957798 | TCTCGTCCGTTACTATGTTTGATT | 58.042 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
5415 | 7501 | 7.087409 | TCTCGTCCGTTACTATGTTTGATTA | 57.913 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
5416 | 7502 | 7.709947 | TCTCGTCCGTTACTATGTTTGATTAT | 58.290 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
5417 | 7503 | 8.192774 | TCTCGTCCGTTACTATGTTTGATTATT | 58.807 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
5418 | 7504 | 8.706492 | TCGTCCGTTACTATGTTTGATTATTT | 57.294 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
5419 | 7505 | 9.800433 | TCGTCCGTTACTATGTTTGATTATTTA | 57.200 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
5455 | 7544 | 5.626142 | TGTCACCCTTTGCTTATTTACTGA | 58.374 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
5464 | 7553 | 8.946085 | CCTTTGCTTATTTACTGAATGAGTACA | 58.054 | 33.333 | 0.00 | 0.00 | 36.86 | 2.90 |
5531 | 7620 | 4.572389 | GCTGAAGTTCGTCATATCCAACAT | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
5564 | 7653 | 1.623811 | GACCTACAGCCAAGGAGTCAA | 59.376 | 52.381 | 3.73 | 0.00 | 37.57 | 3.18 |
5596 | 7685 | 6.407187 | GGAAAGGTAGATAAGAGACCAACTCC | 60.407 | 46.154 | 0.00 | 0.00 | 45.96 | 3.85 |
5598 | 7687 | 6.593759 | AGGTAGATAAGAGACCAACTCCTA | 57.406 | 41.667 | 0.00 | 0.00 | 45.96 | 2.94 |
5724 | 7813 | 0.601558 | CTTGCAATGCTGGCTCTTGT | 59.398 | 50.000 | 6.82 | 0.00 | 0.00 | 3.16 |
5733 | 7822 | 5.927281 | ATGCTGGCTCTTGTCATTATTTT | 57.073 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
5854 | 7949 | 8.642432 | CCTGATATCTCATGTTGTTAAGTCCTA | 58.358 | 37.037 | 3.98 | 0.00 | 0.00 | 2.94 |
5922 | 8024 | 3.070159 | CAGTCTCACCTCTTTCAGAACCA | 59.930 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
5978 | 8081 | 7.918562 | GCTAACCTGTTGAATTGTTTTGAGTTA | 59.081 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
6041 | 8144 | 4.796369 | CCTATTTGGTAAAACGGCGAAAA | 58.204 | 39.130 | 16.62 | 2.78 | 0.00 | 2.29 |
6136 | 8239 | 1.153369 | ATGTCGCGGTGGATGAAGG | 60.153 | 57.895 | 6.13 | 0.00 | 0.00 | 3.46 |
6145 | 8248 | 3.886123 | CGGTGGATGAAGGGACTAATTT | 58.114 | 45.455 | 0.00 | 0.00 | 38.49 | 1.82 |
6149 | 8252 | 5.893824 | GGTGGATGAAGGGACTAATTTGAAT | 59.106 | 40.000 | 0.00 | 0.00 | 38.49 | 2.57 |
6263 | 8366 | 2.800250 | CTTTCAGCCCTTGGATTCACT | 58.200 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
6266 | 8369 | 1.280133 | TCAGCCCTTGGATTCACTCTG | 59.720 | 52.381 | 0.00 | 0.00 | 0.00 | 3.35 |
6269 | 8372 | 1.680249 | GCCCTTGGATTCACTCTGACC | 60.680 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
6325 | 8428 | 6.073494 | AGTCTATCATCACACGTCGAGATAAG | 60.073 | 42.308 | 0.00 | 0.00 | 0.00 | 1.73 |
6529 | 8664 | 7.522073 | GCCAATCAAGAACTGTTTTGAGATGTA | 60.522 | 37.037 | 16.96 | 2.11 | 36.81 | 2.29 |
6533 | 8668 | 6.420903 | TCAAGAACTGTTTTGAGATGTAGACG | 59.579 | 38.462 | 11.46 | 0.00 | 0.00 | 4.18 |
6582 | 8717 | 7.898918 | TGTAGTTAGTGGTAGCAGTATCAAAA | 58.101 | 34.615 | 16.38 | 0.45 | 0.00 | 2.44 |
6583 | 8718 | 8.537016 | TGTAGTTAGTGGTAGCAGTATCAAAAT | 58.463 | 33.333 | 16.38 | 4.92 | 0.00 | 1.82 |
6640 | 8775 | 3.508845 | ATGTAGGCCACTGTTCACTTT | 57.491 | 42.857 | 5.01 | 0.00 | 0.00 | 2.66 |
6644 | 8779 | 2.233271 | AGGCCACTGTTCACTTTCATG | 58.767 | 47.619 | 5.01 | 0.00 | 0.00 | 3.07 |
6676 | 8811 | 1.566703 | TGTGTTCTTTTGGGGTCTGGA | 59.433 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
6680 | 8815 | 0.771127 | TCTTTTGGGGTCTGGACAGG | 59.229 | 55.000 | 3.10 | 0.00 | 0.00 | 4.00 |
6681 | 8816 | 0.771127 | CTTTTGGGGTCTGGACAGGA | 59.229 | 55.000 | 3.10 | 0.00 | 0.00 | 3.86 |
6682 | 8817 | 0.771127 | TTTTGGGGTCTGGACAGGAG | 59.229 | 55.000 | 3.10 | 0.00 | 0.00 | 3.69 |
6683 | 8818 | 0.401395 | TTTGGGGTCTGGACAGGAGT | 60.401 | 55.000 | 3.10 | 0.00 | 0.00 | 3.85 |
6684 | 8819 | 1.127567 | TTGGGGTCTGGACAGGAGTG | 61.128 | 60.000 | 3.10 | 0.00 | 0.00 | 3.51 |
6685 | 8820 | 2.665603 | GGGTCTGGACAGGAGTGC | 59.334 | 66.667 | 3.10 | 0.00 | 36.51 | 4.40 |
6686 | 8821 | 1.915769 | GGGTCTGGACAGGAGTGCT | 60.916 | 63.158 | 3.10 | 0.00 | 36.96 | 4.40 |
6687 | 8822 | 1.294780 | GGTCTGGACAGGAGTGCTG | 59.705 | 63.158 | 10.51 | 10.51 | 36.96 | 4.41 |
6688 | 8823 | 1.375268 | GTCTGGACAGGAGTGCTGC | 60.375 | 63.158 | 12.13 | 4.61 | 36.96 | 5.25 |
6689 | 8824 | 2.046507 | CTGGACAGGAGTGCTGCC | 60.047 | 66.667 | 12.13 | 13.91 | 36.96 | 4.85 |
6690 | 8825 | 2.848679 | TGGACAGGAGTGCTGCCA | 60.849 | 61.111 | 18.94 | 18.94 | 36.96 | 4.92 |
6691 | 8826 | 2.046507 | GGACAGGAGTGCTGCCAG | 60.047 | 66.667 | 12.13 | 0.00 | 32.70 | 4.85 |
6692 | 8827 | 2.746359 | GACAGGAGTGCTGCCAGT | 59.254 | 61.111 | 12.13 | 0.00 | 0.00 | 4.00 |
6693 | 8828 | 1.072159 | GACAGGAGTGCTGCCAGTT | 59.928 | 57.895 | 12.13 | 0.00 | 0.00 | 3.16 |
6694 | 8829 | 0.952984 | GACAGGAGTGCTGCCAGTTC | 60.953 | 60.000 | 12.13 | 0.00 | 0.00 | 3.01 |
6695 | 8830 | 1.071987 | CAGGAGTGCTGCCAGTTCA | 59.928 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
6696 | 8831 | 0.322277 | CAGGAGTGCTGCCAGTTCAT | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6697 | 8832 | 1.065926 | CAGGAGTGCTGCCAGTTCATA | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 2.15 |
6698 | 8833 | 1.065854 | AGGAGTGCTGCCAGTTCATAC | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 2.39 |
6699 | 8834 | 1.339055 | GGAGTGCTGCCAGTTCATACA | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
6700 | 8835 | 1.734465 | GAGTGCTGCCAGTTCATACAC | 59.266 | 52.381 | 0.00 | 0.00 | 0.00 | 2.90 |
6701 | 8836 | 0.443869 | GTGCTGCCAGTTCATACACG | 59.556 | 55.000 | 0.00 | 0.00 | 0.00 | 4.49 |
6702 | 8837 | 0.320050 | TGCTGCCAGTTCATACACGA | 59.680 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
6703 | 8838 | 1.002366 | GCTGCCAGTTCATACACGAG | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
6704 | 8839 | 1.404181 | GCTGCCAGTTCATACACGAGA | 60.404 | 52.381 | 0.00 | 0.00 | 0.00 | 4.04 |
6705 | 8840 | 2.534298 | CTGCCAGTTCATACACGAGAG | 58.466 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
6706 | 8841 | 2.164422 | CTGCCAGTTCATACACGAGAGA | 59.836 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
6707 | 8842 | 2.164422 | TGCCAGTTCATACACGAGAGAG | 59.836 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
6708 | 8843 | 2.480416 | GCCAGTTCATACACGAGAGAGG | 60.480 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
6709 | 8844 | 3.017442 | CCAGTTCATACACGAGAGAGGA | 58.983 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
6710 | 8845 | 3.444034 | CCAGTTCATACACGAGAGAGGAA | 59.556 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
6711 | 8846 | 4.082190 | CCAGTTCATACACGAGAGAGGAAA | 60.082 | 45.833 | 0.00 | 0.00 | 0.00 | 3.13 |
6712 | 8847 | 5.470368 | CAGTTCATACACGAGAGAGGAAAA | 58.530 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
6713 | 8848 | 5.574830 | CAGTTCATACACGAGAGAGGAAAAG | 59.425 | 44.000 | 0.00 | 0.00 | 0.00 | 2.27 |
6714 | 8849 | 5.477291 | AGTTCATACACGAGAGAGGAAAAGA | 59.523 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
6726 | 8861 | 8.244802 | CGAGAGAGGAAAAGAGAGTATTTACAA | 58.755 | 37.037 | 0.00 | 0.00 | 0.00 | 2.41 |
6767 | 8985 | 3.408288 | TGTCTGGTTACAAAAACGCAC | 57.592 | 42.857 | 0.00 | 0.00 | 0.00 | 5.34 |
6776 | 8994 | 2.869897 | ACAAAAACGCACGAACACAAT | 58.130 | 38.095 | 0.00 | 0.00 | 0.00 | 2.71 |
6777 | 8995 | 2.596419 | ACAAAAACGCACGAACACAATG | 59.404 | 40.909 | 0.00 | 0.00 | 0.00 | 2.82 |
6780 | 8998 | 0.816018 | AACGCACGAACACAATGGGA | 60.816 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
6795 | 9013 | 1.226262 | GGGAATTTAGCCCGGCTCA | 59.774 | 57.895 | 17.40 | 0.89 | 40.44 | 4.26 |
6798 | 9016 | 0.868406 | GAATTTAGCCCGGCTCATCG | 59.132 | 55.000 | 17.40 | 0.00 | 40.44 | 3.84 |
6829 | 9047 | 1.136057 | CGTTCAGAAGGCCGTTAAAGC | 60.136 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
6904 | 9122 | 1.516386 | GAGTCGAAGATGCGCCGAA | 60.516 | 57.895 | 4.18 | 0.00 | 40.67 | 4.30 |
6919 | 9137 | 1.208293 | GCCGAAATCTCTCCTTCCACT | 59.792 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
6920 | 9138 | 2.431057 | GCCGAAATCTCTCCTTCCACTA | 59.569 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
6922 | 9140 | 4.797933 | GCCGAAATCTCTCCTTCCACTATC | 60.798 | 50.000 | 0.00 | 0.00 | 0.00 | 2.08 |
6928 | 9146 | 8.800370 | AAATCTCTCCTTCCACTATCTTTTTC | 57.200 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
6930 | 9148 | 6.940739 | TCTCTCCTTCCACTATCTTTTTCTG | 58.059 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
6943 | 9161 | 3.828451 | TCTTTTTCTGGAGGAAATGGCAG | 59.172 | 43.478 | 0.00 | 0.00 | 42.63 | 4.85 |
6944 | 9162 | 2.978156 | TTTCTGGAGGAAATGGCAGT | 57.022 | 45.000 | 0.00 | 0.00 | 38.81 | 4.40 |
6964 | 9182 | 5.163519 | GCAGTGTGCCTATTCATTAATTGGT | 60.164 | 40.000 | 2.70 | 0.00 | 39.40 | 3.67 |
6972 | 9190 | 7.014230 | TGCCTATTCATTAATTGGTTAGAAGCC | 59.986 | 37.037 | 2.70 | 0.00 | 39.40 | 4.35 |
7016 | 9239 | 0.250640 | CAGGACAAGGTGCAGAAGCT | 60.251 | 55.000 | 0.00 | 0.00 | 42.74 | 3.74 |
7028 | 9259 | 1.615384 | GCAGAAGCTCCCAAAGGACAT | 60.615 | 52.381 | 0.00 | 0.00 | 37.19 | 3.06 |
7109 | 9340 | 3.708220 | CTCGGTGGAGAGCTTCGGC | 62.708 | 68.421 | 0.00 | 0.00 | 43.27 | 5.54 |
7119 | 9350 | 1.078848 | AGCTTCGGCGCTGAAGATT | 60.079 | 52.632 | 46.91 | 34.72 | 46.64 | 2.40 |
7128 | 9359 | 2.031437 | GGCGCTGAAGATTCATCTTGAC | 59.969 | 50.000 | 7.64 | 0.00 | 46.47 | 3.18 |
7134 | 9365 | 5.523188 | GCTGAAGATTCATCTTGACGAGATT | 59.477 | 40.000 | 6.79 | 0.00 | 46.47 | 2.40 |
7142 | 9373 | 7.631717 | TTCATCTTGACGAGATTAGAGAGAA | 57.368 | 36.000 | 2.11 | 0.43 | 42.55 | 2.87 |
7172 | 9403 | 4.210120 | CGGAGATGGAATGAGATCGAAAAC | 59.790 | 45.833 | 0.00 | 0.00 | 0.00 | 2.43 |
7180 | 9411 | 0.108945 | GAGATCGAAAACCCCGACGT | 60.109 | 55.000 | 0.00 | 0.00 | 38.97 | 4.34 |
7193 | 9425 | 0.672711 | CCGACGTTTCCCTCTTTCCC | 60.673 | 60.000 | 0.00 | 0.00 | 0.00 | 3.97 |
7221 | 9453 | 2.160205 | CGCCCCGTATGAGAGAGATTA | 58.840 | 52.381 | 0.00 | 0.00 | 0.00 | 1.75 |
7222 | 9454 | 2.557056 | CGCCCCGTATGAGAGAGATTAA | 59.443 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
7223 | 9455 | 3.366476 | CGCCCCGTATGAGAGAGATTAAG | 60.366 | 52.174 | 0.00 | 0.00 | 0.00 | 1.85 |
7227 | 9459 | 4.827835 | CCCGTATGAGAGAGATTAAGTCCA | 59.172 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
7228 | 9460 | 5.478679 | CCCGTATGAGAGAGATTAAGTCCAT | 59.521 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
7250 | 9483 | 4.343231 | TCCAAATGGCAGCTGAAAGAATA | 58.657 | 39.130 | 20.43 | 0.00 | 32.10 | 1.75 |
7251 | 9484 | 4.957954 | TCCAAATGGCAGCTGAAAGAATAT | 59.042 | 37.500 | 20.43 | 0.00 | 32.10 | 1.28 |
7321 | 9554 | 2.277591 | GCCCATGCAGCAGGTCAAA | 61.278 | 57.895 | 6.27 | 0.00 | 37.47 | 2.69 |
7322 | 9555 | 1.888018 | CCCATGCAGCAGGTCAAAG | 59.112 | 57.895 | 6.27 | 0.00 | 0.00 | 2.77 |
7323 | 9556 | 0.896940 | CCCATGCAGCAGGTCAAAGT | 60.897 | 55.000 | 6.27 | 0.00 | 0.00 | 2.66 |
7324 | 9557 | 0.524862 | CCATGCAGCAGGTCAAAGTC | 59.475 | 55.000 | 6.27 | 0.00 | 0.00 | 3.01 |
7325 | 9558 | 1.531423 | CATGCAGCAGGTCAAAGTCT | 58.469 | 50.000 | 0.00 | 0.00 | 0.00 | 3.24 |
7326 | 9559 | 2.616256 | CCATGCAGCAGGTCAAAGTCTA | 60.616 | 50.000 | 6.27 | 0.00 | 0.00 | 2.59 |
7328 | 9561 | 1.694150 | TGCAGCAGGTCAAAGTCTAGT | 59.306 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
7329 | 9562 | 2.104792 | TGCAGCAGGTCAAAGTCTAGTT | 59.895 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
7366 | 9599 | 1.214175 | TCAGCAGTTTCCAAACTCCCA | 59.786 | 47.619 | 1.52 | 0.00 | 45.65 | 4.37 |
7400 | 9633 | 3.510388 | TTGGTGAGAGCAACTCTATCG | 57.490 | 47.619 | 11.18 | 0.00 | 41.35 | 2.92 |
7401 | 9634 | 2.447443 | TGGTGAGAGCAACTCTATCGT | 58.553 | 47.619 | 11.18 | 0.00 | 41.35 | 3.73 |
7403 | 9636 | 3.377485 | TGGTGAGAGCAACTCTATCGTAC | 59.623 | 47.826 | 11.18 | 0.00 | 41.35 | 3.67 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
47 | 48 | 9.824534 | GAACATTTTTGAATTGTGTGAACTTTT | 57.175 | 25.926 | 0.00 | 0.00 | 0.00 | 2.27 |
50 | 51 | 8.605746 | CATGAACATTTTTGAATTGTGTGAACT | 58.394 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
227 | 229 | 9.559958 | CGAGCAGTTTTTACAAATTCATAAGAT | 57.440 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
330 | 334 | 5.861787 | ACCAGTTTTTGAACTTTTCGAACTG | 59.138 | 36.000 | 0.00 | 15.53 | 41.77 | 3.16 |
350 | 354 | 7.161773 | ACATACTTTCCAAAATCATGACCAG | 57.838 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
353 | 357 | 8.081633 | TGTGAACATACTTTCCAAAATCATGAC | 58.918 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
418 | 422 | 7.768582 | CCCTCTTCTCTTTCTTTCCTTTCTATC | 59.231 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
426 | 430 | 5.048364 | GCTTTTCCCTCTTCTCTTTCTTTCC | 60.048 | 44.000 | 0.00 | 0.00 | 0.00 | 3.13 |
442 | 446 | 5.632244 | TTATTTACTGTTCCGCTTTTCCC | 57.368 | 39.130 | 0.00 | 0.00 | 0.00 | 3.97 |
449 | 453 | 6.973006 | TTTCGTTTTTATTTACTGTTCCGC | 57.027 | 33.333 | 0.00 | 0.00 | 0.00 | 5.54 |
537 | 546 | 5.333566 | TCCTTCCCCACACTTCTTTTAAT | 57.666 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
542 | 551 | 2.041755 | GGATTCCTTCCCCACACTTCTT | 59.958 | 50.000 | 0.00 | 0.00 | 38.75 | 2.52 |
544 | 553 | 2.130272 | GGATTCCTTCCCCACACTTC | 57.870 | 55.000 | 0.00 | 0.00 | 38.75 | 3.01 |
592 | 601 | 0.605319 | CATACACACCCCAACAGCGT | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
605 | 614 | 3.539431 | ATAGCGAGCTCGTACATACAC | 57.461 | 47.619 | 34.46 | 16.86 | 42.22 | 2.90 |
610 | 619 | 1.801395 | GCCAAATAGCGAGCTCGTACA | 60.801 | 52.381 | 34.46 | 21.01 | 42.22 | 2.90 |
611 | 620 | 0.853419 | GCCAAATAGCGAGCTCGTAC | 59.147 | 55.000 | 34.46 | 20.47 | 42.22 | 3.67 |
612 | 621 | 3.267900 | GCCAAATAGCGAGCTCGTA | 57.732 | 52.632 | 34.46 | 24.72 | 42.22 | 3.43 |
613 | 622 | 4.110493 | GCCAAATAGCGAGCTCGT | 57.890 | 55.556 | 34.46 | 23.50 | 42.22 | 4.18 |
863 | 1864 | 0.468029 | CCCAACCCTGGTCATATGGC | 60.468 | 60.000 | 2.13 | 0.00 | 41.72 | 4.40 |
882 | 1883 | 7.045416 | AGTCAAAACCCCAAAGATTTTGTTAC | 58.955 | 34.615 | 8.14 | 1.99 | 41.77 | 2.50 |
893 | 1894 | 5.051153 | GCGAAAATTAGTCAAAACCCCAAA | 58.949 | 37.500 | 0.00 | 0.00 | 0.00 | 3.28 |
925 | 1957 | 4.100529 | CGACGGCGAAAATTAGTCTCTTA | 58.899 | 43.478 | 16.62 | 0.00 | 40.82 | 2.10 |
928 | 1964 | 2.523015 | TCGACGGCGAAAATTAGTCTC | 58.477 | 47.619 | 13.07 | 0.00 | 44.78 | 3.36 |
1013 | 2049 | 0.606604 | TGTCTGGTTTAGTCGGAGGC | 59.393 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1017 | 2053 | 2.352814 | CCTCTGTGTCTGGTTTAGTCGG | 60.353 | 54.545 | 0.00 | 0.00 | 0.00 | 4.79 |
1023 | 2059 | 0.765510 | GGACCCTCTGTGTCTGGTTT | 59.234 | 55.000 | 0.00 | 0.00 | 33.22 | 3.27 |
1152 | 2194 | 3.785859 | GATGTGAGGGCGGGCTGA | 61.786 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
1188 | 2230 | 1.006825 | CATCACGAAACACGAGCGGA | 61.007 | 55.000 | 0.00 | 0.00 | 45.77 | 5.54 |
1209 | 2251 | 1.000496 | CGCCCGAGAACCCTATAAGTC | 60.000 | 57.143 | 0.00 | 0.00 | 0.00 | 3.01 |
1213 | 2255 | 1.741327 | GCACGCCCGAGAACCCTATA | 61.741 | 60.000 | 0.00 | 0.00 | 0.00 | 1.31 |
1236 | 2284 | 0.801451 | CTGCACGCAAAGCAAACACA | 60.801 | 50.000 | 0.00 | 0.00 | 42.17 | 3.72 |
1238 | 2286 | 1.226916 | CCTGCACGCAAAGCAAACA | 60.227 | 52.632 | 0.00 | 0.00 | 42.17 | 2.83 |
1280 | 2330 | 3.948719 | GTCGCCACAACCTCCCCA | 61.949 | 66.667 | 0.00 | 0.00 | 0.00 | 4.96 |
1378 | 2428 | 1.323271 | TGCTAGAGCGGAGAACAGGG | 61.323 | 60.000 | 0.00 | 0.00 | 45.83 | 4.45 |
1403 | 2453 | 0.813184 | ACCAATCAAATCGCTGGCTG | 59.187 | 50.000 | 0.00 | 0.00 | 31.74 | 4.85 |
1404 | 2454 | 1.549203 | AACCAATCAAATCGCTGGCT | 58.451 | 45.000 | 0.00 | 0.00 | 31.74 | 4.75 |
1405 | 2455 | 2.094545 | AGAAACCAATCAAATCGCTGGC | 60.095 | 45.455 | 0.00 | 0.00 | 31.74 | 4.85 |
1430 | 2480 | 3.664888 | AGCATTGCCAGGCAGGGA | 61.665 | 61.111 | 15.50 | 0.00 | 40.61 | 4.20 |
1443 | 2493 | 2.662535 | TGCCATAGTAATGCCAGCAT | 57.337 | 45.000 | 0.00 | 0.00 | 38.46 | 3.79 |
1449 | 2504 | 1.466167 | CTCGGCATGCCATAGTAATGC | 59.534 | 52.381 | 34.93 | 5.36 | 44.75 | 3.56 |
1464 | 2519 | 3.547613 | CGTAGACCATTGTACTACTCGGC | 60.548 | 52.174 | 0.00 | 0.00 | 35.69 | 5.54 |
1517 | 2572 | 7.195646 | CGCACTACAATAATCCATTCACAAAT | 58.804 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
1518 | 2573 | 6.550843 | CGCACTACAATAATCCATTCACAAA | 58.449 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1570 | 2632 | 1.002624 | TGCTCGAATCCAACACCCC | 60.003 | 57.895 | 0.00 | 0.00 | 0.00 | 4.95 |
1571 | 2633 | 1.026718 | CCTGCTCGAATCCAACACCC | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1572 | 2634 | 1.026718 | CCCTGCTCGAATCCAACACC | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1608 | 2670 | 7.361457 | ACCCAAATATCTAGAGTTCGATTCA | 57.639 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
1645 | 2713 | 8.784043 | CCTGCCCTGTAAATCAATTAGTATAAC | 58.216 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
1651 | 2719 | 4.792068 | TCCCTGCCCTGTAAATCAATTAG | 58.208 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
1663 | 2731 | 1.751927 | GAATGCACTCCCTGCCCTG | 60.752 | 63.158 | 0.00 | 0.00 | 46.51 | 4.45 |
1670 | 2738 | 4.390264 | GAATTAGGGTAGAATGCACTCCC | 58.610 | 47.826 | 0.00 | 0.00 | 34.82 | 4.30 |
1671 | 2739 | 4.058817 | CGAATTAGGGTAGAATGCACTCC | 58.941 | 47.826 | 0.00 | 0.00 | 34.82 | 3.85 |
1673 | 2741 | 4.755266 | ACGAATTAGGGTAGAATGCACT | 57.245 | 40.909 | 0.00 | 0.00 | 38.69 | 4.40 |
1693 | 2780 | 3.685836 | ACAAACAACTACGCCTTCAAC | 57.314 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
1694 | 2781 | 4.156190 | TCAAACAAACAACTACGCCTTCAA | 59.844 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
1702 | 2789 | 9.691362 | ACCAATGATAATCAAACAAACAACTAC | 57.309 | 29.630 | 0.00 | 0.00 | 0.00 | 2.73 |
1731 | 2819 | 9.076596 | GCTTATTTTTACCATCTGTCAATTGAC | 57.923 | 33.333 | 28.10 | 28.10 | 44.97 | 3.18 |
1732 | 2820 | 8.250332 | GGCTTATTTTTACCATCTGTCAATTGA | 58.750 | 33.333 | 3.38 | 3.38 | 0.00 | 2.57 |
1733 | 2821 | 8.253113 | AGGCTTATTTTTACCATCTGTCAATTG | 58.747 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1734 | 2822 | 8.366359 | AGGCTTATTTTTACCATCTGTCAATT | 57.634 | 30.769 | 0.00 | 0.00 | 0.00 | 2.32 |
1736 | 2824 | 7.669722 | AGAAGGCTTATTTTTACCATCTGTCAA | 59.330 | 33.333 | 0.00 | 0.00 | 29.52 | 3.18 |
2050 | 3152 | 1.156095 | CAAATGGCCCCTATCCCCC | 59.844 | 63.158 | 0.00 | 0.00 | 0.00 | 5.40 |
2051 | 3153 | 0.786435 | ATCAAATGGCCCCTATCCCC | 59.214 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
2052 | 3154 | 2.110721 | AGAATCAAATGGCCCCTATCCC | 59.889 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2057 | 3159 | 4.337264 | AAAGTAGAATCAAATGGCCCCT | 57.663 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
2112 | 3214 | 7.017056 | AGCCTAGCTAGAAGTCATCCATAATTT | 59.983 | 37.037 | 22.70 | 0.00 | 36.99 | 1.82 |
2113 | 3215 | 6.500049 | AGCCTAGCTAGAAGTCATCCATAATT | 59.500 | 38.462 | 22.70 | 0.00 | 36.99 | 1.40 |
2114 | 3216 | 6.022315 | AGCCTAGCTAGAAGTCATCCATAAT | 58.978 | 40.000 | 22.70 | 0.00 | 36.99 | 1.28 |
2115 | 3217 | 5.398236 | AGCCTAGCTAGAAGTCATCCATAA | 58.602 | 41.667 | 22.70 | 0.00 | 36.99 | 1.90 |
2116 | 3218 | 5.004361 | AGCCTAGCTAGAAGTCATCCATA | 57.996 | 43.478 | 22.70 | 0.00 | 36.99 | 2.74 |
2117 | 3219 | 3.855668 | AGCCTAGCTAGAAGTCATCCAT | 58.144 | 45.455 | 22.70 | 0.00 | 36.99 | 3.41 |
2118 | 3220 | 3.320610 | AGCCTAGCTAGAAGTCATCCA | 57.679 | 47.619 | 22.70 | 0.00 | 36.99 | 3.41 |
2119 | 3221 | 4.321675 | GCTAAGCCTAGCTAGAAGTCATCC | 60.322 | 50.000 | 22.70 | 0.04 | 46.12 | 3.51 |
2120 | 3222 | 4.805219 | GCTAAGCCTAGCTAGAAGTCATC | 58.195 | 47.826 | 22.70 | 2.12 | 46.12 | 2.92 |
2121 | 3223 | 4.864704 | GCTAAGCCTAGCTAGAAGTCAT | 57.135 | 45.455 | 22.70 | 4.75 | 46.12 | 3.06 |
2160 | 3264 | 6.208599 | CCTTTCTGTGGCTTATACCTGAAAAA | 59.791 | 38.462 | 0.00 | 0.00 | 0.00 | 1.94 |
2193 | 3297 | 1.732259 | CTCACTGACACGGCCAATAAC | 59.268 | 52.381 | 2.24 | 0.00 | 0.00 | 1.89 |
2219 | 3323 | 2.432146 | TGAGAGAGTGACACAAAGTGCT | 59.568 | 45.455 | 8.59 | 0.00 | 36.98 | 4.40 |
2241 | 3345 | 9.533831 | ACCATGTTATAAAAAGGAGAAGAACAT | 57.466 | 29.630 | 3.88 | 0.00 | 36.88 | 2.71 |
2252 | 3356 | 9.627123 | TCCTATCAGGAACCATGTTATAAAAAG | 57.373 | 33.333 | 0.00 | 0.00 | 42.51 | 2.27 |
2273 | 3377 | 4.290093 | TCAGGTGTGTAGCTCATTCCTAT | 58.710 | 43.478 | 0.00 | 0.00 | 33.38 | 2.57 |
2282 | 3386 | 7.663905 | TGTTTTATTACATTCAGGTGTGTAGCT | 59.336 | 33.333 | 0.00 | 0.00 | 32.87 | 3.32 |
2406 | 3510 | 0.323629 | TTAACCAGGCAAGGACCTCG | 59.676 | 55.000 | 0.00 | 0.00 | 38.26 | 4.63 |
2462 | 3567 | 3.490759 | GCATGCCACCAGTCGACG | 61.491 | 66.667 | 6.36 | 5.16 | 0.00 | 5.12 |
2484 | 3589 | 1.598701 | GCTGCTTTGGGGTGATGGTC | 61.599 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2488 | 3593 | 0.698238 | TGTAGCTGCTTTGGGGTGAT | 59.302 | 50.000 | 7.79 | 0.00 | 0.00 | 3.06 |
2501 | 3606 | 0.916358 | ATCCAGCCCCTTGTGTAGCT | 60.916 | 55.000 | 0.00 | 0.00 | 35.52 | 3.32 |
2525 | 3630 | 4.219288 | GCATCCAGGATATCAAAATGGTCC | 59.781 | 45.833 | 0.00 | 0.00 | 32.68 | 4.46 |
2653 | 3758 | 1.201429 | ATCACCCGAAGCCCAAGAGT | 61.201 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
2840 | 4409 | 5.654497 | GGAAAACTGATTGTCCAATCCATC | 58.346 | 41.667 | 15.44 | 7.79 | 44.93 | 3.51 |
3066 | 4635 | 4.698575 | TGCAGGGGAAAAACACATTTAAC | 58.301 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
3119 | 4688 | 3.827722 | ACAGCACCTTGGCTAAAGTTTA | 58.172 | 40.909 | 0.00 | 0.00 | 43.68 | 2.01 |
3296 | 4865 | 2.045561 | TGTCCCACACACGTTTTCAT | 57.954 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3425 | 4996 | 5.303589 | AGACACTGGTACAAGCTACTGTTAA | 59.696 | 40.000 | 0.00 | 0.00 | 38.70 | 2.01 |
4216 | 5787 | 3.624861 | GTGCAAGATTGACTGGTGGATAG | 59.375 | 47.826 | 0.00 | 0.00 | 0.00 | 2.08 |
4265 | 5836 | 1.138859 | CAAGTGAGATATCGGGGCACA | 59.861 | 52.381 | 17.21 | 3.95 | 32.16 | 4.57 |
4293 | 5864 | 5.221661 | CCTTCTATTACTAGCCGAACCCATT | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4320 | 5891 | 4.889409 | TCCACTCTGTTGCAAGATTTCTTT | 59.111 | 37.500 | 0.00 | 0.00 | 33.11 | 2.52 |
4520 | 6091 | 5.012239 | TCTCCTATATTTGCATCCCATTGC | 58.988 | 41.667 | 0.00 | 0.00 | 43.07 | 3.56 |
4529 | 6100 | 6.345298 | TGATTTGTCGTCTCCTATATTTGCA | 58.655 | 36.000 | 0.00 | 0.00 | 0.00 | 4.08 |
4547 | 6118 | 6.154445 | CACCCTCTTTCATTGTTCTGATTTG | 58.846 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4620 | 6191 | 1.003928 | TGCTGCAGTGATGTTGATCCT | 59.996 | 47.619 | 16.64 | 0.00 | 0.00 | 3.24 |
4665 | 6236 | 2.170607 | ACACTTTGTGTACTGTGCTCCT | 59.829 | 45.455 | 1.12 | 0.00 | 45.56 | 3.69 |
4675 | 6246 | 5.620206 | AGATGACATGGAACACTTTGTGTA | 58.380 | 37.500 | 3.68 | 0.00 | 46.79 | 2.90 |
4828 | 6401 | 9.797556 | GTACACTTTCTGGTCTTATTTGTTTTT | 57.202 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
5026 | 6625 | 4.220693 | TGATGGTAGTTCATTGACCTGG | 57.779 | 45.455 | 0.00 | 0.00 | 34.13 | 4.45 |
5192 | 7278 | 8.303156 | ACTAAATTCTCTACATCATGAGATCCG | 58.697 | 37.037 | 0.09 | 0.00 | 38.85 | 4.18 |
5219 | 7305 | 7.936847 | ACACAGAAGTCATACTCCAAAAATACA | 59.063 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
5272 | 7358 | 5.964958 | ATGAACAAACATCCTGGTTACAG | 57.035 | 39.130 | 0.00 | 0.00 | 44.51 | 2.74 |
5346 | 7432 | 6.152638 | TCATGAACTCCCCTAAGGAAAAAT | 57.847 | 37.500 | 0.00 | 0.00 | 46.94 | 1.82 |
5372 | 7458 | 3.359950 | AGAAGCCTAAAAATGCTCCCAG | 58.640 | 45.455 | 0.00 | 0.00 | 36.66 | 4.45 |
5376 | 7462 | 3.064134 | GGACGAGAAGCCTAAAAATGCTC | 59.936 | 47.826 | 0.00 | 0.00 | 36.66 | 4.26 |
5378 | 7464 | 2.223044 | CGGACGAGAAGCCTAAAAATGC | 60.223 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
5386 | 7472 | 2.119801 | TAGTAACGGACGAGAAGCCT | 57.880 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
5392 | 7478 | 7.925703 | ATAATCAAACATAGTAACGGACGAG | 57.074 | 36.000 | 0.00 | 0.00 | 0.00 | 4.18 |
5419 | 7505 | 9.255029 | AGCAAAGGGTGACAAACTATAATAAAT | 57.745 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
5420 | 7506 | 8.644374 | AGCAAAGGGTGACAAACTATAATAAA | 57.356 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
5421 | 7507 | 8.644374 | AAGCAAAGGGTGACAAACTATAATAA | 57.356 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
5422 | 7508 | 9.914834 | ATAAGCAAAGGGTGACAAACTATAATA | 57.085 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
5423 | 7509 | 8.823220 | ATAAGCAAAGGGTGACAAACTATAAT | 57.177 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
5455 | 7544 | 8.671921 | CAGCATCAGATTTAAACTGTACTCATT | 58.328 | 33.333 | 13.77 | 0.00 | 36.81 | 2.57 |
5464 | 7553 | 7.391554 | TCAAAGTAGCAGCATCAGATTTAAACT | 59.608 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
5531 | 7620 | 3.386078 | GCTGTAGGTCAAGAGATCCATCA | 59.614 | 47.826 | 0.00 | 0.00 | 0.00 | 3.07 |
5596 | 7685 | 9.862371 | CACTACCCAATAATAATAGCTGACTAG | 57.138 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
5598 | 7687 | 7.016661 | AGCACTACCCAATAATAATAGCTGACT | 59.983 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
5755 | 7844 | 3.606687 | GGGTAATCAACATCGACCAACT | 58.393 | 45.455 | 0.00 | 0.00 | 31.41 | 3.16 |
5807 | 7896 | 9.770097 | ATCAGGACTTAACATGTATATGAACTG | 57.230 | 33.333 | 6.45 | 3.50 | 37.73 | 3.16 |
5922 | 8024 | 0.828762 | TTGCCACAGGAAGCAATGCT | 60.829 | 50.000 | 0.00 | 0.00 | 43.74 | 3.79 |
5978 | 8081 | 1.340795 | CCCCTCTGAAGCTGCAAAGAT | 60.341 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
6041 | 8144 | 3.380637 | GCTCAAGATGATGGAAATGCTGT | 59.619 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
6124 | 8227 | 3.560636 | AATTAGTCCCTTCATCCACCG | 57.439 | 47.619 | 0.00 | 0.00 | 0.00 | 4.94 |
6263 | 8366 | 3.066342 | GGATTATCAGTTCGACGGTCAGA | 59.934 | 47.826 | 9.10 | 3.93 | 0.00 | 3.27 |
6266 | 8369 | 3.066342 | TCTGGATTATCAGTTCGACGGTC | 59.934 | 47.826 | 0.00 | 0.00 | 36.25 | 4.79 |
6269 | 8372 | 3.372954 | GGTCTGGATTATCAGTTCGACG | 58.627 | 50.000 | 0.00 | 0.00 | 36.25 | 5.12 |
6529 | 8664 | 1.302033 | CAGGGTTGAGCAAGCGTCT | 60.302 | 57.895 | 4.83 | 0.00 | 39.53 | 4.18 |
6533 | 8668 | 2.970974 | GCGACAGGGTTGAGCAAGC | 61.971 | 63.158 | 3.94 | 3.94 | 38.03 | 4.01 |
6582 | 8717 | 3.875125 | TCTCCGTCGATAGCAGCTATAT | 58.125 | 45.455 | 15.28 | 0.00 | 0.00 | 0.86 |
6583 | 8718 | 3.329929 | TCTCCGTCGATAGCAGCTATA | 57.670 | 47.619 | 15.28 | 0.00 | 0.00 | 1.31 |
6668 | 8803 | 1.915769 | AGCACTCCTGTCCAGACCC | 60.916 | 63.158 | 0.00 | 0.00 | 0.00 | 4.46 |
6671 | 8806 | 2.587247 | GGCAGCACTCCTGTCCAGA | 61.587 | 63.158 | 0.00 | 0.00 | 43.71 | 3.86 |
6676 | 8811 | 1.072159 | GAACTGGCAGCACTCCTGT | 59.928 | 57.895 | 15.89 | 0.00 | 43.71 | 4.00 |
6680 | 8815 | 1.734465 | GTGTATGAACTGGCAGCACTC | 59.266 | 52.381 | 15.89 | 9.56 | 0.00 | 3.51 |
6681 | 8816 | 1.813513 | GTGTATGAACTGGCAGCACT | 58.186 | 50.000 | 15.89 | 0.00 | 0.00 | 4.40 |
6682 | 8817 | 0.443869 | CGTGTATGAACTGGCAGCAC | 59.556 | 55.000 | 15.89 | 12.15 | 0.00 | 4.40 |
6683 | 8818 | 0.320050 | TCGTGTATGAACTGGCAGCA | 59.680 | 50.000 | 15.89 | 5.77 | 0.00 | 4.41 |
6684 | 8819 | 1.002366 | CTCGTGTATGAACTGGCAGC | 58.998 | 55.000 | 15.89 | 0.00 | 0.00 | 5.25 |
6685 | 8820 | 2.164422 | TCTCTCGTGTATGAACTGGCAG | 59.836 | 50.000 | 14.16 | 14.16 | 0.00 | 4.85 |
6686 | 8821 | 2.164422 | CTCTCTCGTGTATGAACTGGCA | 59.836 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
6687 | 8822 | 2.480416 | CCTCTCTCGTGTATGAACTGGC | 60.480 | 54.545 | 0.00 | 0.00 | 0.00 | 4.85 |
6688 | 8823 | 3.017442 | TCCTCTCTCGTGTATGAACTGG | 58.983 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
6689 | 8824 | 4.703645 | TTCCTCTCTCGTGTATGAACTG | 57.296 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
6690 | 8825 | 5.477291 | TCTTTTCCTCTCTCGTGTATGAACT | 59.523 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
6691 | 8826 | 5.710984 | TCTTTTCCTCTCTCGTGTATGAAC | 58.289 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
6692 | 8827 | 5.710567 | TCTCTTTTCCTCTCTCGTGTATGAA | 59.289 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6693 | 8828 | 5.254115 | TCTCTTTTCCTCTCTCGTGTATGA | 58.746 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
6694 | 8829 | 5.124776 | ACTCTCTTTTCCTCTCTCGTGTATG | 59.875 | 44.000 | 0.00 | 0.00 | 0.00 | 2.39 |
6695 | 8830 | 5.258051 | ACTCTCTTTTCCTCTCTCGTGTAT | 58.742 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
6696 | 8831 | 4.653868 | ACTCTCTTTTCCTCTCTCGTGTA | 58.346 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
6697 | 8832 | 3.492337 | ACTCTCTTTTCCTCTCTCGTGT | 58.508 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
6698 | 8833 | 5.828299 | ATACTCTCTTTTCCTCTCTCGTG | 57.172 | 43.478 | 0.00 | 0.00 | 0.00 | 4.35 |
6699 | 8834 | 6.844097 | AAATACTCTCTTTTCCTCTCTCGT | 57.156 | 37.500 | 0.00 | 0.00 | 0.00 | 4.18 |
6700 | 8835 | 7.763356 | TGTAAATACTCTCTTTTCCTCTCTCG | 58.237 | 38.462 | 0.00 | 0.00 | 0.00 | 4.04 |
6701 | 8836 | 9.581099 | CTTGTAAATACTCTCTTTTCCTCTCTC | 57.419 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
6702 | 8837 | 9.315363 | TCTTGTAAATACTCTCTTTTCCTCTCT | 57.685 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
6726 | 8861 | 8.504005 | CAGACATTTCGTGGTTACTTTTTATCT | 58.496 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
6742 | 8960 | 4.145756 | GCGTTTTTGTAACCAGACATTTCG | 59.854 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
6747 | 8965 | 2.223066 | CGTGCGTTTTTGTAACCAGACA | 60.223 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
6767 | 8985 | 3.428862 | GGGCTAAATTCCCATTGTGTTCG | 60.429 | 47.826 | 0.00 | 0.00 | 43.37 | 3.95 |
6776 | 8994 | 1.226262 | GAGCCGGGCTAAATTCCCA | 59.774 | 57.895 | 23.92 | 0.00 | 44.11 | 4.37 |
6777 | 8995 | 0.178990 | ATGAGCCGGGCTAAATTCCC | 60.179 | 55.000 | 23.92 | 8.17 | 39.88 | 3.97 |
6780 | 8998 | 0.180406 | ACGATGAGCCGGGCTAAATT | 59.820 | 50.000 | 23.92 | 6.87 | 39.88 | 1.82 |
6795 | 9013 | 2.031420 | TCTGAACGACGAAACTGACGAT | 60.031 | 45.455 | 0.00 | 0.00 | 34.70 | 3.73 |
6798 | 9016 | 2.471743 | CCTTCTGAACGACGAAACTGAC | 59.528 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
6829 | 9047 | 2.047560 | GAACGACCGGTCCAAGGG | 60.048 | 66.667 | 28.52 | 16.36 | 0.00 | 3.95 |
6904 | 9122 | 8.046107 | CAGAAAAAGATAGTGGAAGGAGAGATT | 58.954 | 37.037 | 0.00 | 0.00 | 0.00 | 2.40 |
6928 | 9146 | 1.171308 | CACACTGCCATTTCCTCCAG | 58.829 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
6930 | 9148 | 1.885871 | GCACACTGCCATTTCCTCC | 59.114 | 57.895 | 0.00 | 0.00 | 37.42 | 4.30 |
6943 | 9161 | 8.220755 | TCTAACCAATTAATGAATAGGCACAC | 57.779 | 34.615 | 0.00 | 0.00 | 0.00 | 3.82 |
6944 | 9162 | 8.815565 | TTCTAACCAATTAATGAATAGGCACA | 57.184 | 30.769 | 0.00 | 0.00 | 0.00 | 4.57 |
6984 | 9202 | 6.100004 | CACCTTGTCCTGTACATAACTGTAG | 58.900 | 44.000 | 0.00 | 0.00 | 38.51 | 2.74 |
6999 | 9222 | 0.957888 | GGAGCTTCTGCACCTTGTCC | 60.958 | 60.000 | 0.00 | 0.00 | 44.80 | 4.02 |
7016 | 9239 | 2.661176 | AGGTCCTATGTCCTTTGGGA | 57.339 | 50.000 | 0.00 | 0.00 | 39.70 | 4.37 |
7072 | 9303 | 1.714899 | GCGGTTGTTCGATGATGGGG | 61.715 | 60.000 | 0.00 | 0.00 | 0.00 | 4.96 |
7119 | 9350 | 7.284261 | ACATTCTCTCTAATCTCGTCAAGATGA | 59.716 | 37.037 | 0.00 | 0.00 | 44.26 | 2.92 |
7142 | 9373 | 3.963374 | TCTCATTCCATCTCCGAGAACAT | 59.037 | 43.478 | 1.27 | 0.00 | 30.04 | 2.71 |
7153 | 9384 | 3.565902 | GGGGTTTTCGATCTCATTCCATC | 59.434 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
7154 | 9385 | 3.555966 | GGGGTTTTCGATCTCATTCCAT | 58.444 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
7155 | 9386 | 2.679639 | CGGGGTTTTCGATCTCATTCCA | 60.680 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
7156 | 9387 | 1.940613 | CGGGGTTTTCGATCTCATTCC | 59.059 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
7157 | 9388 | 2.608090 | GTCGGGGTTTTCGATCTCATTC | 59.392 | 50.000 | 0.00 | 0.00 | 38.93 | 2.67 |
7180 | 9411 | 2.247358 | GCACATTGGGAAAGAGGGAAA | 58.753 | 47.619 | 0.00 | 0.00 | 0.00 | 3.13 |
7193 | 9425 | 2.515991 | ATACGGGGCGGCACATTG | 60.516 | 61.111 | 13.33 | 0.00 | 0.00 | 2.82 |
7206 | 9438 | 6.207614 | TGGATGGACTTAATCTCTCTCATACG | 59.792 | 42.308 | 0.00 | 0.00 | 0.00 | 3.06 |
7227 | 9459 | 2.811410 | TCTTTCAGCTGCCATTTGGAT | 58.189 | 42.857 | 9.47 | 0.00 | 37.39 | 3.41 |
7228 | 9460 | 2.291209 | TCTTTCAGCTGCCATTTGGA | 57.709 | 45.000 | 9.47 | 0.00 | 37.39 | 3.53 |
7321 | 9554 | 4.027437 | GACTGGGATGAGGAAACTAGACT | 58.973 | 47.826 | 0.00 | 0.00 | 44.43 | 3.24 |
7322 | 9555 | 3.769844 | TGACTGGGATGAGGAAACTAGAC | 59.230 | 47.826 | 0.00 | 0.00 | 44.43 | 2.59 |
7323 | 9556 | 4.026744 | CTGACTGGGATGAGGAAACTAGA | 58.973 | 47.826 | 0.00 | 0.00 | 44.43 | 2.43 |
7324 | 9557 | 3.772025 | ACTGACTGGGATGAGGAAACTAG | 59.228 | 47.826 | 0.00 | 0.00 | 44.43 | 2.57 |
7325 | 9558 | 3.769844 | GACTGACTGGGATGAGGAAACTA | 59.230 | 47.826 | 0.00 | 0.00 | 44.43 | 2.24 |
7328 | 9561 | 2.568956 | CTGACTGACTGGGATGAGGAAA | 59.431 | 50.000 | 0.00 | 0.00 | 0.00 | 3.13 |
7329 | 9562 | 2.182827 | CTGACTGACTGGGATGAGGAA | 58.817 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
7366 | 9599 | 3.070018 | CTCACCAAAACTGCTTCTCGAT | 58.930 | 45.455 | 0.00 | 0.00 | 0.00 | 3.59 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.