AutoCloner

Multiple sequence alignment - TraesCS6A01G137600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G137600	chr6A	100.000	2660	0	0	1	2660	108333054	108330395	0.000000e+00	4913.0
1	TraesCS6A01G137600	chr6A	91.494	870	69	3	1796	2660	494037793	494036924	0.000000e+00	1192.0
2	TraesCS6A01G137600	chr6A	93.076	621	41	1	1053	1671	108216625	108216005	0.000000e+00	907.0
3	TraesCS6A01G137600	chr6A	88.939	669	70	2	1053	1720	108652331	108651666	0.000000e+00	822.0
4	TraesCS6A01G137600	chr6A	86.522	690	62	12	338	1007	108653092	108652414	0.000000e+00	730.0
5	TraesCS6A01G137600	chr6A	82.494	794	95	21	247	1025	108217464	108216700	0.000000e+00	656.0
6	TraesCS6A01G137600	chr6B	96.059	812	20	4	246	1053	172466064	172465261	0.000000e+00	1312.0
7	TraesCS6A01G137600	chr6B	96.322	734	26	1	1053	1785	172465215	172464482	0.000000e+00	1205.0
8	TraesCS6A01G137600	chr6B	92.787	610	44	0	1053	1662	172368491	172367882	0.000000e+00	883.0
9	TraesCS6A01G137600	chr6B	84.758	866	117	7	1800	2660	26391604	26392459	0.000000e+00	854.0
10	TraesCS6A01G137600	chr6B	89.381	678	65	3	1053	1726	172575202	172574528	0.000000e+00	846.0
11	TraesCS6A01G137600	chr6B	86.842	684	56	21	338	1007	172575947	172575284	0.000000e+00	734.0
12	TraesCS6A01G137600	chr6B	84.367	742	85	15	291	1018	172369323	172368599	0.000000e+00	699.0
13	TraesCS6A01G137600	chr6B	95.588	204	8	1	1	204	172466270	172466068	2.550000e-85	326.0
14	TraesCS6A01G137600	chr6B	73.035	738	184	13	1932	2660	151413773	151413042	2.050000e-61	246.0
15	TraesCS6A01G137600	chr5B	87.864	824	80	11	1841	2660	641553561	641554368	0.000000e+00	950.0
16	TraesCS6A01G137600	chr6D	92.742	620	42	3	1053	1671	90348270	90348887	0.000000e+00	893.0
17	TraesCS6A01G137600	chr6D	89.333	675	68	2	1053	1726	90194557	90195228	0.000000e+00	845.0
18	TraesCS6A01G137600	chr6D	87.786	655	61	8	406	1048	90193859	90194506	0.000000e+00	749.0
19	TraesCS6A01G137600	chr6D	84.241	698	70	17	291	963	90347444	90348126	0.000000e+00	643.0
20	TraesCS6A01G137600	chr4A	81.265	854	137	15	1815	2660	325472457	325473295	0.000000e+00	669.0
21	TraesCS6A01G137600	chr7B	74.290	739	179	9	1928	2660	552706065	552705332	4.300000e-78	302.0
22	TraesCS6A01G137600	chr7B	74.084	737	182	8	1928	2660	552753053	552752322	7.200000e-76	294.0
23	TraesCS6A01G137600	chr7B	73.113	755	189	12	1914	2660	192802520	192801772	9.450000e-65	257.0
24	TraesCS6A01G137600	chr5A	76.350	389	83	7	1933	2315	71127192	71127577	1.610000e-47	200.0
25	TraesCS6A01G137600	chr5D	75.281	356	76	11	2032	2381	529572068	529572417	2.740000e-35	159.0
26	TraesCS6A01G137600	chr2A	93.182	44	2	1	2596	2638	501055844	501055801	2.210000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G137600	chr6A	108330395	108333054	2659	True	4913.000000	4913	100.000000	1	2660	1	chr6A.!!$R1	2659
1	TraesCS6A01G137600	chr6A	494036924	494037793	869	True	1192.000000	1192	91.494000	1796	2660	1	chr6A.!!$R2	864
2	TraesCS6A01G137600	chr6A	108216005	108217464	1459	True	781.500000	907	87.785000	247	1671	2	chr6A.!!$R3	1424
3	TraesCS6A01G137600	chr6A	108651666	108653092	1426	True	776.000000	822	87.730500	338	1720	2	chr6A.!!$R4	1382
4	TraesCS6A01G137600	chr6B	172464482	172466270	1788	True	947.666667	1312	95.989667	1	1785	3	chr6B.!!$R3	1784
5	TraesCS6A01G137600	chr6B	26391604	26392459	855	False	854.000000	854	84.758000	1800	2660	1	chr6B.!!$F1	860
6	TraesCS6A01G137600	chr6B	172367882	172369323	1441	True	791.000000	883	88.577000	291	1662	2	chr6B.!!$R2	1371
7	TraesCS6A01G137600	chr6B	172574528	172575947	1419	True	790.000000	846	88.111500	338	1726	2	chr6B.!!$R4	1388
8	TraesCS6A01G137600	chr6B	151413042	151413773	731	True	246.000000	246	73.035000	1932	2660	1	chr6B.!!$R1	728
9	TraesCS6A01G137600	chr5B	641553561	641554368	807	False	950.000000	950	87.864000	1841	2660	1	chr5B.!!$F1	819
10	TraesCS6A01G137600	chr6D	90193859	90195228	1369	False	797.000000	845	88.559500	406	1726	2	chr6D.!!$F1	1320
11	TraesCS6A01G137600	chr6D	90347444	90348887	1443	False	768.000000	893	88.491500	291	1671	2	chr6D.!!$F2	1380
12	TraesCS6A01G137600	chr4A	325472457	325473295	838	False	669.000000	669	81.265000	1815	2660	1	chr4A.!!$F1	845
13	TraesCS6A01G137600	chr7B	552705332	552706065	733	True	302.000000	302	74.290000	1928	2660	1	chr7B.!!$R2	732
14	TraesCS6A01G137600	chr7B	552752322	552753053	731	True	294.000000	294	74.084000	1928	2660	1	chr7B.!!$R3	732
15	TraesCS6A01G137600	chr7B	192801772	192802520	748	True	257.000000	257	73.113000	1914	2660	1	chr7B.!!$R1	746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
116	117	0.179037	ATGCATGGACGATGGACCAG	60.179	55.0	0.0	0.0	41.22	4.0	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1904	2051	0.036448	CGATCTAGGGACTCCGCCTA	59.964	60.0	0.0	0.0	41.75	3.93	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
66	67	7.726033	TTAGACAAGAGATTAGCTTTCTCCT	57.274	36.000	18.00	12.34	40.43	3.69
116	117	0.179037	ATGCATGGACGATGGACCAG	60.179	55.000	0.00	0.00	41.22	4.00
122	123	1.718757	GGACGATGGACCAGCAATGC	61.719	60.000	10.94	0.00	0.00	3.56
126	127	1.815021	CGATGGACCAGCAATGCCATA	60.815	52.381	10.94	0.00	41.00	2.74
208	209	9.699410	AATCAACCTTTTATATGATTCACCTCA	57.301	29.630	0.00	0.00	37.86	3.86
209	210	9.872684	ATCAACCTTTTATATGATTCACCTCAT	57.127	29.630	0.00	0.00	39.22	2.90
210	211	9.123902	TCAACCTTTTATATGATTCACCTCATG	57.876	33.333	0.00	0.00	36.55	3.07
211	212	8.906867	CAACCTTTTATATGATTCACCTCATGT	58.093	33.333	0.00	0.00	36.55	3.21
213	214	9.561069	ACCTTTTATATGATTCACCTCATGTAC	57.439	33.333	0.00	0.00	36.55	2.90
214	215	9.784531	CCTTTTATATGATTCACCTCATGTACT	57.215	33.333	0.00	0.00	36.55	2.73
216	217	9.778741	TTTTATATGATTCACCTCATGTACTCC	57.221	33.333	0.00	0.00	36.55	3.85
217	218	8.491045	TTATATGATTCACCTCATGTACTCCA	57.509	34.615	0.00	0.00	36.55	3.86
218	219	4.743057	TGATTCACCTCATGTACTCCAG	57.257	45.455	0.00	0.00	0.00	3.86
219	220	4.096681	TGATTCACCTCATGTACTCCAGT	58.903	43.478	0.00	0.00	0.00	4.00
220	221	5.269189	TGATTCACCTCATGTACTCCAGTA	58.731	41.667	0.00	0.00	0.00	2.74
221	222	5.899547	TGATTCACCTCATGTACTCCAGTAT	59.100	40.000	0.00	0.00	32.54	2.12
222	223	7.066781	TGATTCACCTCATGTACTCCAGTATA	58.933	38.462	0.00	0.00	32.54	1.47
223	224	7.730332	TGATTCACCTCATGTACTCCAGTATAT	59.270	37.037	0.00	0.00	33.46	0.86
224	225	9.244292	GATTCACCTCATGTACTCCAGTATATA	57.756	37.037	0.00	0.00	32.25	0.86
225	226	7.997773	TCACCTCATGTACTCCAGTATATAC	57.002	40.000	4.60	4.60	32.25	1.47
226	227	6.946583	TCACCTCATGTACTCCAGTATATACC	59.053	42.308	9.32	0.00	32.25	2.73
227	228	6.948886	CACCTCATGTACTCCAGTATATACCT	59.051	42.308	9.32	0.00	32.25	3.08
228	229	7.121463	CACCTCATGTACTCCAGTATATACCTC	59.879	44.444	9.32	0.00	32.25	3.85
229	230	6.603997	CCTCATGTACTCCAGTATATACCTCC	59.396	46.154	9.32	0.00	32.25	4.30
230	231	6.178324	TCATGTACTCCAGTATATACCTCCG	58.822	44.000	9.32	0.00	32.25	4.63
231	232	5.830799	TGTACTCCAGTATATACCTCCGA	57.169	43.478	9.32	0.00	32.54	4.55
232	233	5.555017	TGTACTCCAGTATATACCTCCGAC	58.445	45.833	9.32	2.60	32.54	4.79
233	234	3.672808	ACTCCAGTATATACCTCCGACG	58.327	50.000	9.32	0.00	0.00	5.12
234	235	3.326006	ACTCCAGTATATACCTCCGACGA	59.674	47.826	9.32	0.00	0.00	4.20
235	236	4.019501	ACTCCAGTATATACCTCCGACGAT	60.020	45.833	9.32	0.00	0.00	3.73
236	237	5.188555	ACTCCAGTATATACCTCCGACGATA	59.811	44.000	9.32	0.00	0.00	2.92
237	238	6.053632	TCCAGTATATACCTCCGACGATAA	57.946	41.667	9.32	0.00	0.00	1.75
238	239	6.475504	TCCAGTATATACCTCCGACGATAAA	58.524	40.000	9.32	0.00	0.00	1.40
239	240	7.114754	TCCAGTATATACCTCCGACGATAAAT	58.885	38.462	9.32	0.00	0.00	1.40
240	241	8.267183	TCCAGTATATACCTCCGACGATAAATA	58.733	37.037	9.32	0.00	0.00	1.40
241	242	8.896744	CCAGTATATACCTCCGACGATAAATAA	58.103	37.037	9.32	0.00	0.00	1.40
284	285	8.068380	GCCTTAATTACGTAATCCTTGATTGAC	58.932	37.037	20.57	1.14	33.95	3.18
286	287	9.916397	CTTAATTACGTAATCCTTGATTGACAC	57.084	33.333	20.57	0.00	33.95	3.67
287	288	7.915293	AATTACGTAATCCTTGATTGACACA	57.085	32.000	20.57	0.00	33.95	3.72
288	289	6.715344	TTACGTAATCCTTGATTGACACAC	57.285	37.500	3.29	0.00	33.95	3.82
289	290	4.637276	ACGTAATCCTTGATTGACACACA	58.363	39.130	0.00	0.00	33.95	3.72
676	707	0.247067	CGTCGTCGACTTCTACGGTC	60.247	60.000	22.18	0.00	39.52	4.79
735	790	2.969950	AGCGAGGGGTGCTTATGTTATA	59.030	45.455	0.00	0.00	40.48	0.98
737	792	3.933332	GCGAGGGGTGCTTATGTTATATC	59.067	47.826	0.00	0.00	0.00	1.63
966	1021	4.467084	GCATCGCTCCCGGGAACA	62.467	66.667	26.68	11.62	35.59	3.18
1027	1105	2.476018	GCATGCGTCGTCAATTTCATGA	60.476	45.455	0.00	0.00	34.79	3.07
1050	1138	6.707440	AGGTTCAGTAGATCTGTACATCAG	57.293	41.667	5.18	0.00	43.25	2.90
1776	1923	5.021033	ACATGCAAAAGACAATGGACAAA	57.979	34.783	0.00	0.00	0.00	2.83
1777	1924	5.051816	ACATGCAAAAGACAATGGACAAAG	58.948	37.500	0.00	0.00	0.00	2.77
1778	1925	4.998671	TGCAAAAGACAATGGACAAAGA	57.001	36.364	0.00	0.00	0.00	2.52
1779	1926	5.534207	TGCAAAAGACAATGGACAAAGAT	57.466	34.783	0.00	0.00	0.00	2.40
1780	1927	6.647334	TGCAAAAGACAATGGACAAAGATA	57.353	33.333	0.00	0.00	0.00	1.98
1781	1928	7.048629	TGCAAAAGACAATGGACAAAGATAA	57.951	32.000	0.00	0.00	0.00	1.75
1783	1930	7.652909	TGCAAAAGACAATGGACAAAGATAAAG	59.347	33.333	0.00	0.00	0.00	1.85
1784	1931	7.653311	GCAAAAGACAATGGACAAAGATAAAGT	59.347	33.333	0.00	0.00	0.00	2.66
1787	1934	9.793259	AAAGACAATGGACAAAGATAAAGTAGA	57.207	29.630	0.00	0.00	0.00	2.59
1788	1935	9.793259	AAGACAATGGACAAAGATAAAGTAGAA	57.207	29.630	0.00	0.00	0.00	2.10
1789	1936	9.793259	AGACAATGGACAAAGATAAAGTAGAAA	57.207	29.630	0.00	0.00	0.00	2.52
1811	1958	6.496144	AAATATCTTTTCCCCTACGCTACT	57.504	37.500	0.00	0.00	0.00	2.57
1813	1960	1.829222	TCTTTTCCCCTACGCTACTGG	59.171	52.381	0.00	0.00	0.00	4.00
1866	2013	2.043248	TCCGAGTCTACCCCTGCC	60.043	66.667	0.00	0.00	0.00	4.85
1904	2051	4.462417	CGCGCTCCGTCGTCTTCT	62.462	66.667	5.56	0.00	0.00	2.85
1913	2060	1.367599	CGTCGTCTTCTAGGCGGAGT	61.368	60.000	0.51	0.00	44.63	3.85
2008	2163	3.857010	GCCAAATCGGACTTGGAAAACTG	60.857	47.826	21.45	0.00	45.31	3.16
2068	2229	7.866898	GGATGTAGATATTGATGAGGATGATCG	59.133	40.741	0.00	0.00	28.17	3.69
2240	2401	4.670199	CAGGCATCATGCTTGGGA	57.330	55.556	13.93	0.00	45.32	4.37
2243	2404	0.106819	AGGCATCATGCTTGGGAGAC	60.107	55.000	10.11	0.00	44.28	3.36
2287	2448	0.676466	CCATGGCTGTTCCGCAACTA	60.676	55.000	0.00	0.00	37.80	2.24
2417	2578	4.070716	AGAAGAACATTGTGGAGAAGCTG	58.929	43.478	0.00	0.00	0.00	4.24
2525	2687	5.934935	TCCAACAACCTCTTACGAAATTC	57.065	39.130	0.00	0.00	0.00	2.17
2552	2714	1.438651	TCATTCGAGCAAAGGAACGG	58.561	50.000	0.00	0.00	0.00	4.44

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	73	2.489971	CGGCTCTAGTTTTTGGTGACA	58.510	47.619	0.00	0.00	39.83	3.58
116	117	2.929398	CGGGAAGTTTTTATGGCATTGC	59.071	45.455	4.78	0.00	0.00	3.56
146	147	6.959639	TGAGAAGATATGGTTTTTATGGCC	57.040	37.500	0.00	0.00	0.00	5.36
204	205	6.603997	GGAGGTATATACTGGAGTACATGAGG	59.396	46.154	12.54	0.00	32.72	3.86
205	206	6.316640	CGGAGGTATATACTGGAGTACATGAG	59.683	46.154	12.54	0.00	32.72	2.90
207	208	6.093771	GTCGGAGGTATATACTGGAGTACATG	59.906	46.154	12.54	0.00	32.72	3.21
208	209	6.179040	GTCGGAGGTATATACTGGAGTACAT	58.821	44.000	12.54	0.00	32.72	2.29
209	210	5.555017	GTCGGAGGTATATACTGGAGTACA	58.445	45.833	12.54	0.00	32.72	2.90
210	211	4.629200	CGTCGGAGGTATATACTGGAGTAC	59.371	50.000	12.54	4.39	32.72	2.73
211	212	4.528206	TCGTCGGAGGTATATACTGGAGTA	59.472	45.833	12.54	0.00	34.67	2.59
212	213	3.326006	TCGTCGGAGGTATATACTGGAGT	59.674	47.826	12.54	0.00	0.00	3.85
213	214	3.935315	TCGTCGGAGGTATATACTGGAG	58.065	50.000	12.54	3.37	0.00	3.86
214	215	4.564782	ATCGTCGGAGGTATATACTGGA	57.435	45.455	12.54	2.95	0.00	3.86
215	216	6.748333	TTTATCGTCGGAGGTATATACTGG	57.252	41.667	12.54	0.79	0.00	4.00
242	243	9.716531	GTAATTAAGGCGGAGGTATATACTTTT	57.283	33.333	12.54	0.00	0.00	2.27
243	244	8.031277	CGTAATTAAGGCGGAGGTATATACTTT	58.969	37.037	12.54	1.89	0.00	2.66
244	245	7.177392	ACGTAATTAAGGCGGAGGTATATACTT	59.823	37.037	12.54	4.94	0.00	2.24
264	265	6.876789	TGTGTGTCAATCAAGGATTACGTAAT	59.123	34.615	20.46	20.46	30.44	1.89
265	266	6.146510	GTGTGTGTCAATCAAGGATTACGTAA	59.853	38.462	11.02	11.02	30.44	3.18
266	267	5.636121	GTGTGTGTCAATCAAGGATTACGTA	59.364	40.000	0.00	0.00	30.44	3.57
267	268	4.451096	GTGTGTGTCAATCAAGGATTACGT	59.549	41.667	0.00	0.00	30.44	3.57
284	285	2.807392	TGCATATCAGTGTGTGTGTGTG	59.193	45.455	0.00	0.00	0.00	3.82
286	287	4.690184	AATGCATATCAGTGTGTGTGTG	57.310	40.909	0.00	0.00	0.00	3.82
287	288	6.038603	GGATAAATGCATATCAGTGTGTGTGT	59.961	38.462	0.00	0.00	34.58	3.72
288	289	6.038492	TGGATAAATGCATATCAGTGTGTGTG	59.962	38.462	0.00	0.00	34.58	3.82
289	290	6.121590	TGGATAAATGCATATCAGTGTGTGT	58.878	36.000	0.00	0.00	34.58	3.72
322	323	1.979809	ACTTCATGGGGTATGTGGGA	58.020	50.000	0.00	0.00	38.01	4.37
735	790	3.535561	CCTCCGCTGAAAACATACAGAT	58.464	45.455	0.00	0.00	36.38	2.90
737	792	1.398390	GCCTCCGCTGAAAACATACAG	59.602	52.381	0.00	0.00	37.22	2.74
926	981	2.223923	CGCGAGGATCTTCTTGAAGGAT	60.224	50.000	0.00	3.56	0.00	3.24
1050	1138	2.359850	TCGCCCATCAGCACCAAC	60.360	61.111	0.00	0.00	0.00	3.77
1205	1346	3.530910	AAGTTGCCAGGGACGACGG	62.531	63.158	0.00	0.00	0.00	4.79
1687	1833	2.683362	TCACTACAGCTACATCAGTCGG	59.317	50.000	0.00	0.00	0.00	4.79
1758	1905	7.653311	ACTTTATCTTTGTCCATTGTCTTTTGC	59.347	33.333	0.00	0.00	0.00	3.68
1780	1927	9.392259	CGTAGGGGAAAAGATATTTTCTACTTT	57.608	33.333	21.37	11.66	39.99	2.66
1781	1928	7.498239	GCGTAGGGGAAAAGATATTTTCTACTT	59.502	37.037	21.37	14.59	39.99	2.24
1783	1930	6.990939	AGCGTAGGGGAAAAGATATTTTCTAC	59.009	38.462	21.37	15.60	39.99	2.59
1784	1931	7.133133	AGCGTAGGGGAAAAGATATTTTCTA	57.867	36.000	21.37	7.09	39.99	2.10
1785	1932	6.002653	AGCGTAGGGGAAAAGATATTTTCT	57.997	37.500	21.37	7.94	39.99	2.52
1786	1933	6.990939	AGTAGCGTAGGGGAAAAGATATTTTC	59.009	38.462	15.62	15.62	39.52	2.29
1787	1934	6.766467	CAGTAGCGTAGGGGAAAAGATATTTT	59.234	38.462	0.00	0.00	0.00	1.82
1788	1935	6.289064	CAGTAGCGTAGGGGAAAAGATATTT	58.711	40.000	0.00	0.00	0.00	1.40
1789	1936	5.221661	CCAGTAGCGTAGGGGAAAAGATATT	60.222	44.000	0.00	0.00	0.00	1.28
1790	1937	4.283722	CCAGTAGCGTAGGGGAAAAGATAT	59.716	45.833	0.00	0.00	0.00	1.63
1791	1938	3.640029	CCAGTAGCGTAGGGGAAAAGATA	59.360	47.826	0.00	0.00	0.00	1.98
1792	1939	2.434702	CCAGTAGCGTAGGGGAAAAGAT	59.565	50.000	0.00	0.00	0.00	2.40
1793	1940	1.829222	CCAGTAGCGTAGGGGAAAAGA	59.171	52.381	0.00	0.00	0.00	2.52
1794	1941	1.553704	ACCAGTAGCGTAGGGGAAAAG	59.446	52.381	0.00	0.00	0.00	2.27
1795	1942	1.648116	ACCAGTAGCGTAGGGGAAAA	58.352	50.000	0.00	0.00	0.00	2.29
1796	1943	2.381911	CTACCAGTAGCGTAGGGGAAA	58.618	52.381	0.00	0.00	31.40	3.13
1797	1944	1.410648	CCTACCAGTAGCGTAGGGGAA	60.411	57.143	6.18	0.00	46.23	3.97
1798	1945	0.184451	CCTACCAGTAGCGTAGGGGA	59.816	60.000	6.18	0.00	46.23	4.81
1809	1956	3.297736	CGAGGATAGAAACCCTACCAGT	58.702	50.000	0.00	0.00	31.84	4.00
1811	1958	3.393426	ACGAGGATAGAAACCCTACCA	57.607	47.619	0.00	0.00	31.84	3.25
1813	1960	3.255395	GCCTACGAGGATAGAAACCCTAC	59.745	52.174	5.24	0.00	37.67	3.18
1877	2024	2.959071	GGAGCGCGCAGATCAGAC	60.959	66.667	35.10	12.65	36.90	3.51
1878	2025	4.559229	CGGAGCGCGCAGATCAGA	62.559	66.667	35.10	0.00	36.90	3.27
1904	2051	0.036448	CGATCTAGGGACTCCGCCTA	59.964	60.000	0.00	0.00	41.75	3.93
1913	2060	0.931468	TCAGGGGAACGATCTAGGGA	59.069	55.000	0.00	0.00	0.00	4.20
1977	2132	4.114997	CGATTTGGCGGCCACCAC	62.115	66.667	23.78	14.16	40.19	4.16
2008	2163	1.066858	TGAGATCCAACTGGTCGAAGC	60.067	52.381	0.00	0.00	36.34	3.86
2051	2212	6.847421	ATCTCACGATCATCCTCATCAATA	57.153	37.500	0.00	0.00	0.00	1.90
2068	2229	4.691216	ACCAGACGCTTTCTTTAATCTCAC	59.309	41.667	0.00	0.00	28.96	3.51
2240	2401	1.145598	CATCATGCGCTCCCAGTCT	59.854	57.895	9.73	0.00	0.00	3.24
2243	2404	1.853114	GCATCATCATGCGCTCCCAG	61.853	60.000	9.73	0.00	46.06	4.45
2267	2428	2.676121	TTGCGGAACAGCCATGGG	60.676	61.111	15.13	0.00	35.94	4.00
2287	2448	2.672996	GGCACATCAACACCGCCT	60.673	61.111	0.00	0.00	39.73	5.52
2417	2578	2.614829	TATCGCCTGCTCCCTTTAAC	57.385	50.000	0.00	0.00	0.00	2.01
2473	2634	3.066291	TCACACGCACCCTTATGAAAT	57.934	42.857	0.00	0.00	0.00	2.17
2476	2638	2.027653	TGATTCACACGCACCCTTATGA	60.028	45.455	0.00	0.00	0.00	2.15
2525	2687	5.041287	TCCTTTGCTCGAATGATACTAACG	58.959	41.667	0.00	0.00	0.00	3.18
2552	2714	0.905357	ACCAGACCAGATACACCTGC	59.095	55.000	0.00	0.00	32.97	4.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.