Multiple sequence alignment - TraesCS6A01G137000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G137000 | chr6A | 100.000 | 3874 | 0 | 0 | 1 | 3874 | 108174753 | 108178626 | 0.000000e+00 | 7155 |
1 | TraesCS6A01G137000 | chr6A | 90.826 | 109 | 7 | 3 | 579 | 684 | 47680669 | 47680561 | 4.030000e-30 | 143 |
2 | TraesCS6A01G137000 | chr6D | 92.209 | 1476 | 57 | 27 | 2256 | 3695 | 89730971 | 89732424 | 0.000000e+00 | 2036 |
3 | TraesCS6A01G137000 | chr6D | 92.496 | 693 | 45 | 7 | 1517 | 2207 | 89730125 | 89730812 | 0.000000e+00 | 985 |
4 | TraesCS6A01G137000 | chr6D | 94.505 | 546 | 19 | 4 | 672 | 1207 | 89729282 | 89729826 | 0.000000e+00 | 832 |
5 | TraesCS6A01G137000 | chr6D | 87.066 | 518 | 31 | 8 | 96 | 587 | 89728774 | 89729281 | 1.570000e-153 | 553 |
6 | TraesCS6A01G137000 | chr6D | 96.053 | 228 | 6 | 1 | 1262 | 1486 | 89729827 | 89730054 | 6.110000e-98 | 368 |
7 | TraesCS6A01G137000 | chr6D | 90.576 | 191 | 10 | 6 | 3685 | 3872 | 89732704 | 89732889 | 2.990000e-61 | 246 |
8 | TraesCS6A01G137000 | chr6B | 90.856 | 1553 | 91 | 25 | 672 | 2205 | 172261105 | 172262625 | 0.000000e+00 | 2034 |
9 | TraesCS6A01G137000 | chr6B | 90.191 | 1468 | 63 | 30 | 2203 | 3629 | 172262658 | 172264085 | 0.000000e+00 | 1838 |
10 | TraesCS6A01G137000 | chr6B | 86.328 | 512 | 41 | 8 | 96 | 587 | 172260602 | 172261104 | 7.370000e-147 | 531 |
11 | TraesCS6A01G137000 | chr6B | 94.845 | 97 | 5 | 0 | 589 | 685 | 477833991 | 477834087 | 6.700000e-33 | 152 |
12 | TraesCS6A01G137000 | chr1D | 89.744 | 234 | 16 | 4 | 3023 | 3252 | 403278837 | 403278608 | 3.790000e-75 | 292 |
13 | TraesCS6A01G137000 | chr2D | 89.316 | 234 | 17 | 4 | 3023 | 3252 | 579178343 | 579178572 | 1.760000e-73 | 287 |
14 | TraesCS6A01G137000 | chr7D | 88.462 | 234 | 19 | 5 | 3023 | 3252 | 559288900 | 559288671 | 3.810000e-70 | 276 |
15 | TraesCS6A01G137000 | chr7D | 93.137 | 102 | 4 | 3 | 589 | 688 | 503323092 | 503323192 | 3.120000e-31 | 147 |
16 | TraesCS6A01G137000 | chr4B | 86.975 | 238 | 19 | 6 | 3023 | 3252 | 184600699 | 184600932 | 1.380000e-64 | 257 |
17 | TraesCS6A01G137000 | chr4B | 90.991 | 111 | 6 | 4 | 587 | 695 | 630098743 | 630098851 | 3.120000e-31 | 147 |
18 | TraesCS6A01G137000 | chr4B | 94.624 | 93 | 4 | 1 | 589 | 681 | 600126334 | 600126425 | 4.030000e-30 | 143 |
19 | TraesCS6A01G137000 | chr5A | 85.652 | 230 | 17 | 6 | 3023 | 3252 | 615774106 | 615773893 | 1.080000e-55 | 228 |
20 | TraesCS6A01G137000 | chr5A | 85.652 | 230 | 17 | 6 | 3023 | 3252 | 615833218 | 615833005 | 1.080000e-55 | 228 |
21 | TraesCS6A01G137000 | chr5A | 94.845 | 97 | 4 | 1 | 589 | 684 | 25892276 | 25892372 | 2.410000e-32 | 150 |
22 | TraesCS6A01G137000 | chr5A | 90.909 | 110 | 6 | 3 | 1522 | 1630 | 688967916 | 688967810 | 1.120000e-30 | 145 |
23 | TraesCS6A01G137000 | chr5A | 93.000 | 100 | 4 | 3 | 1527 | 1625 | 688965928 | 688965831 | 4.030000e-30 | 143 |
24 | TraesCS6A01G137000 | chr3A | 95.000 | 100 | 3 | 2 | 585 | 683 | 727583900 | 727583998 | 5.180000e-34 | 156 |
25 | TraesCS6A01G137000 | chr5B | 95.652 | 92 | 4 | 0 | 1527 | 1618 | 689884272 | 689884363 | 8.670000e-32 | 148 |
26 | TraesCS6A01G137000 | chr5B | 93.939 | 99 | 5 | 1 | 1527 | 1625 | 689892620 | 689892717 | 8.670000e-32 | 148 |
27 | TraesCS6A01G137000 | chr4A | 92.453 | 106 | 5 | 3 | 1520 | 1623 | 622239364 | 622239260 | 8.670000e-32 | 148 |
28 | TraesCS6A01G137000 | chr5D | 93.137 | 102 | 4 | 3 | 1526 | 1626 | 490026123 | 490026024 | 3.120000e-31 | 147 |
29 | TraesCS6A01G137000 | chr5D | 91.429 | 105 | 8 | 1 | 577 | 681 | 210057989 | 210057886 | 4.030000e-30 | 143 |
30 | TraesCS6A01G137000 | chr5D | 90.351 | 114 | 3 | 6 | 1520 | 1632 | 546686472 | 546686578 | 4.030000e-30 | 143 |
31 | TraesCS6A01G137000 | chr3B | 90.179 | 112 | 6 | 4 | 564 | 673 | 99763150 | 99763258 | 1.450000e-29 | 141 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G137000 | chr6A | 108174753 | 108178626 | 3873 | False | 7155.000000 | 7155 | 100.000000 | 1 | 3874 | 1 | chr6A.!!$F1 | 3873 |
1 | TraesCS6A01G137000 | chr6D | 89728774 | 89732889 | 4115 | False | 836.666667 | 2036 | 92.150833 | 96 | 3872 | 6 | chr6D.!!$F1 | 3776 |
2 | TraesCS6A01G137000 | chr6B | 172260602 | 172264085 | 3483 | False | 1467.666667 | 2034 | 89.125000 | 96 | 3629 | 3 | chr6B.!!$F2 | 3533 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
38 | 39 | 0.171903 | ATTTCATGGCAGAAGCACGC | 59.828 | 50.0 | 0.0 | 0.0 | 44.61 | 5.34 | F |
240 | 265 | 0.184933 | AAAACTAGCTGTGGGTGGCA | 59.815 | 50.0 | 0.0 | 0.0 | 0.00 | 4.92 | F |
243 | 268 | 0.322816 | ACTAGCTGTGGGTGGCAATG | 60.323 | 55.0 | 0.0 | 0.0 | 0.00 | 2.82 | F |
1489 | 1542 | 0.473117 | TTCCTCGGTCCTCCCAACTT | 60.473 | 55.0 | 0.0 | 0.0 | 0.00 | 2.66 | F |
1621 | 1732 | 0.537188 | ACTGAGCTATGGACCCGTTG | 59.463 | 55.0 | 0.0 | 0.0 | 0.00 | 4.10 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1812 | 1924 | 0.742281 | CCCAGCTTGGAGATGTGTCG | 60.742 | 60.000 | 0.00 | 0.0 | 40.96 | 4.35 | R |
1997 | 2113 | 0.825410 | CTCAGAGAGCCTGCAGACAT | 59.175 | 55.000 | 17.39 | 0.0 | 42.62 | 3.06 | R |
2195 | 2311 | 3.482472 | CGTCACGACACTGACATATAAGC | 59.518 | 47.826 | 0.00 | 0.0 | 40.67 | 3.09 | R |
2384 | 2609 | 1.517538 | ATGGAGGCAACCAATGGGGA | 61.518 | 55.000 | 3.55 | 0.0 | 43.47 | 4.81 | R |
3552 | 3849 | 0.459585 | GATGCGAGCTCCAACGGTAA | 60.460 | 55.000 | 8.47 | 0.0 | 0.00 | 2.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
23 | 24 | 6.579491 | GATGCTGCATGGTTAGAAAATTTC | 57.421 | 37.500 | 21.53 | 0.00 | 0.00 | 2.17 |
24 | 25 | 5.465532 | TGCTGCATGGTTAGAAAATTTCA | 57.534 | 34.783 | 8.55 | 0.00 | 0.00 | 2.69 |
25 | 26 | 6.040209 | TGCTGCATGGTTAGAAAATTTCAT | 57.960 | 33.333 | 8.55 | 0.00 | 0.00 | 2.57 |
26 | 27 | 5.870433 | TGCTGCATGGTTAGAAAATTTCATG | 59.130 | 36.000 | 8.55 | 9.71 | 36.17 | 3.07 |
27 | 28 | 5.292589 | GCTGCATGGTTAGAAAATTTCATGG | 59.707 | 40.000 | 8.55 | 3.70 | 34.36 | 3.66 |
28 | 29 | 5.177326 | TGCATGGTTAGAAAATTTCATGGC | 58.823 | 37.500 | 8.55 | 8.79 | 34.36 | 4.40 |
29 | 30 | 5.177326 | GCATGGTTAGAAAATTTCATGGCA | 58.823 | 37.500 | 8.55 | 0.00 | 34.36 | 4.92 |
30 | 31 | 5.292589 | GCATGGTTAGAAAATTTCATGGCAG | 59.707 | 40.000 | 8.55 | 0.00 | 34.36 | 4.85 |
31 | 32 | 6.632909 | CATGGTTAGAAAATTTCATGGCAGA | 58.367 | 36.000 | 8.55 | 0.00 | 0.00 | 4.26 |
32 | 33 | 6.662865 | TGGTTAGAAAATTTCATGGCAGAA | 57.337 | 33.333 | 8.55 | 0.00 | 0.00 | 3.02 |
33 | 34 | 6.690530 | TGGTTAGAAAATTTCATGGCAGAAG | 58.309 | 36.000 | 8.55 | 0.00 | 0.00 | 2.85 |
34 | 35 | 5.578336 | GGTTAGAAAATTTCATGGCAGAAGC | 59.422 | 40.000 | 8.55 | 0.00 | 41.10 | 3.86 |
35 | 36 | 4.877378 | AGAAAATTTCATGGCAGAAGCA | 57.123 | 36.364 | 8.55 | 0.00 | 44.61 | 3.91 |
36 | 37 | 4.563061 | AGAAAATTTCATGGCAGAAGCAC | 58.437 | 39.130 | 8.55 | 0.00 | 44.61 | 4.40 |
37 | 38 | 2.642139 | AATTTCATGGCAGAAGCACG | 57.358 | 45.000 | 0.00 | 0.00 | 44.61 | 5.34 |
38 | 39 | 0.171903 | ATTTCATGGCAGAAGCACGC | 59.828 | 50.000 | 0.00 | 0.00 | 44.61 | 5.34 |
39 | 40 | 1.171549 | TTTCATGGCAGAAGCACGCA | 61.172 | 50.000 | 0.00 | 0.00 | 44.61 | 5.24 |
40 | 41 | 1.171549 | TTCATGGCAGAAGCACGCAA | 61.172 | 50.000 | 0.00 | 0.00 | 44.61 | 4.85 |
41 | 42 | 1.154093 | CATGGCAGAAGCACGCAAG | 60.154 | 57.895 | 0.00 | 0.00 | 44.61 | 4.01 |
42 | 43 | 2.986306 | ATGGCAGAAGCACGCAAGC | 61.986 | 57.895 | 0.00 | 0.00 | 44.61 | 4.01 |
43 | 44 | 3.663176 | GGCAGAAGCACGCAAGCA | 61.663 | 61.111 | 0.00 | 0.00 | 44.61 | 3.91 |
44 | 45 | 2.332514 | GCAGAAGCACGCAAGCAA | 59.667 | 55.556 | 0.00 | 0.00 | 45.62 | 3.91 |
45 | 46 | 1.299316 | GCAGAAGCACGCAAGCAAA | 60.299 | 52.632 | 0.00 | 0.00 | 45.62 | 3.68 |
46 | 47 | 1.273455 | GCAGAAGCACGCAAGCAAAG | 61.273 | 55.000 | 0.00 | 0.00 | 45.62 | 2.77 |
47 | 48 | 0.308684 | CAGAAGCACGCAAGCAAAGA | 59.691 | 50.000 | 0.00 | 0.00 | 45.62 | 2.52 |
48 | 49 | 1.024271 | AGAAGCACGCAAGCAAAGAA | 58.976 | 45.000 | 0.00 | 0.00 | 45.62 | 2.52 |
49 | 50 | 1.002033 | AGAAGCACGCAAGCAAAGAAG | 60.002 | 47.619 | 0.00 | 0.00 | 45.62 | 2.85 |
50 | 51 | 1.002468 | GAAGCACGCAAGCAAAGAAGA | 60.002 | 47.619 | 0.00 | 0.00 | 45.62 | 2.87 |
51 | 52 | 1.242076 | AGCACGCAAGCAAAGAAGAT | 58.758 | 45.000 | 0.00 | 0.00 | 45.62 | 2.40 |
52 | 53 | 2.426522 | AGCACGCAAGCAAAGAAGATA | 58.573 | 42.857 | 0.00 | 0.00 | 45.62 | 1.98 |
53 | 54 | 2.813754 | AGCACGCAAGCAAAGAAGATAA | 59.186 | 40.909 | 0.00 | 0.00 | 45.62 | 1.75 |
54 | 55 | 3.441572 | AGCACGCAAGCAAAGAAGATAAT | 59.558 | 39.130 | 0.00 | 0.00 | 45.62 | 1.28 |
55 | 56 | 3.545078 | GCACGCAAGCAAAGAAGATAATG | 59.455 | 43.478 | 0.00 | 0.00 | 45.62 | 1.90 |
56 | 57 | 3.545078 | CACGCAAGCAAAGAAGATAATGC | 59.455 | 43.478 | 0.00 | 0.00 | 45.62 | 3.56 |
57 | 58 | 3.191162 | ACGCAAGCAAAGAAGATAATGCA | 59.809 | 39.130 | 0.00 | 0.00 | 41.18 | 3.96 |
58 | 59 | 4.168014 | CGCAAGCAAAGAAGATAATGCAA | 58.832 | 39.130 | 0.00 | 0.00 | 41.18 | 4.08 |
59 | 60 | 4.264614 | CGCAAGCAAAGAAGATAATGCAAG | 59.735 | 41.667 | 0.00 | 0.00 | 41.18 | 4.01 |
60 | 61 | 5.166398 | GCAAGCAAAGAAGATAATGCAAGT | 58.834 | 37.500 | 0.00 | 0.00 | 41.18 | 3.16 |
61 | 62 | 5.636543 | GCAAGCAAAGAAGATAATGCAAGTT | 59.363 | 36.000 | 0.00 | 0.00 | 41.18 | 2.66 |
62 | 63 | 6.146673 | GCAAGCAAAGAAGATAATGCAAGTTT | 59.853 | 34.615 | 0.00 | 0.00 | 41.18 | 2.66 |
63 | 64 | 7.307573 | GCAAGCAAAGAAGATAATGCAAGTTTT | 60.308 | 33.333 | 0.00 | 0.00 | 41.18 | 2.43 |
64 | 65 | 9.195411 | CAAGCAAAGAAGATAATGCAAGTTTTA | 57.805 | 29.630 | 0.00 | 0.00 | 41.18 | 1.52 |
65 | 66 | 9.933723 | AAGCAAAGAAGATAATGCAAGTTTTAT | 57.066 | 25.926 | 0.00 | 0.00 | 41.18 | 1.40 |
66 | 67 | 9.362539 | AGCAAAGAAGATAATGCAAGTTTTATG | 57.637 | 29.630 | 0.00 | 0.00 | 41.18 | 1.90 |
67 | 68 | 8.598075 | GCAAAGAAGATAATGCAAGTTTTATGG | 58.402 | 33.333 | 0.00 | 0.00 | 38.63 | 2.74 |
68 | 69 | 8.598075 | CAAAGAAGATAATGCAAGTTTTATGGC | 58.402 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
69 | 70 | 7.408756 | AGAAGATAATGCAAGTTTTATGGCA | 57.591 | 32.000 | 0.00 | 0.00 | 41.00 | 4.92 |
70 | 71 | 7.839907 | AGAAGATAATGCAAGTTTTATGGCAA | 58.160 | 30.769 | 0.00 | 0.00 | 40.02 | 4.52 |
71 | 72 | 8.313292 | AGAAGATAATGCAAGTTTTATGGCAAA | 58.687 | 29.630 | 0.00 | 0.00 | 40.02 | 3.68 |
72 | 73 | 7.832503 | AGATAATGCAAGTTTTATGGCAAAC | 57.167 | 32.000 | 0.00 | 0.00 | 40.02 | 2.93 |
73 | 74 | 7.385267 | AGATAATGCAAGTTTTATGGCAAACA | 58.615 | 30.769 | 0.00 | 0.00 | 40.02 | 2.83 |
74 | 75 | 7.877097 | AGATAATGCAAGTTTTATGGCAAACAA | 59.123 | 29.630 | 0.00 | 0.00 | 40.02 | 2.83 |
75 | 76 | 6.690194 | AATGCAAGTTTTATGGCAAACAAA | 57.310 | 29.167 | 0.00 | 0.00 | 40.02 | 2.83 |
76 | 77 | 6.880942 | ATGCAAGTTTTATGGCAAACAAAT | 57.119 | 29.167 | 0.00 | 0.00 | 40.02 | 2.32 |
77 | 78 | 7.976135 | ATGCAAGTTTTATGGCAAACAAATA | 57.024 | 28.000 | 0.00 | 0.00 | 40.02 | 1.40 |
78 | 79 | 7.792374 | TGCAAGTTTTATGGCAAACAAATAA | 57.208 | 28.000 | 0.00 | 0.00 | 38.86 | 1.40 |
79 | 80 | 7.859598 | TGCAAGTTTTATGGCAAACAAATAAG | 58.140 | 30.769 | 0.00 | 0.00 | 38.86 | 1.73 |
80 | 81 | 6.796552 | GCAAGTTTTATGGCAAACAAATAAGC | 59.203 | 34.615 | 0.00 | 0.00 | 38.86 | 3.09 |
81 | 82 | 7.307930 | GCAAGTTTTATGGCAAACAAATAAGCT | 60.308 | 33.333 | 0.00 | 0.00 | 38.86 | 3.74 |
82 | 83 | 9.202273 | CAAGTTTTATGGCAAACAAATAAGCTA | 57.798 | 29.630 | 0.00 | 0.00 | 38.86 | 3.32 |
83 | 84 | 9.942850 | AAGTTTTATGGCAAACAAATAAGCTAT | 57.057 | 25.926 | 0.00 | 0.00 | 38.86 | 2.97 |
84 | 85 | 9.586435 | AGTTTTATGGCAAACAAATAAGCTATC | 57.414 | 29.630 | 0.00 | 0.00 | 38.86 | 2.08 |
85 | 86 | 9.364989 | GTTTTATGGCAAACAAATAAGCTATCA | 57.635 | 29.630 | 0.00 | 0.00 | 36.75 | 2.15 |
86 | 87 | 9.935241 | TTTTATGGCAAACAAATAAGCTATCAA | 57.065 | 25.926 | 0.00 | 0.00 | 30.65 | 2.57 |
87 | 88 | 9.585099 | TTTATGGCAAACAAATAAGCTATCAAG | 57.415 | 29.630 | 0.00 | 0.00 | 30.65 | 3.02 |
88 | 89 | 6.832520 | TGGCAAACAAATAAGCTATCAAGA | 57.167 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
89 | 90 | 7.225784 | TGGCAAACAAATAAGCTATCAAGAA | 57.774 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
90 | 91 | 7.090173 | TGGCAAACAAATAAGCTATCAAGAAC | 58.910 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
91 | 92 | 7.090173 | GGCAAACAAATAAGCTATCAAGAACA | 58.910 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
92 | 93 | 7.598493 | GGCAAACAAATAAGCTATCAAGAACAA | 59.402 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
93 | 94 | 8.977505 | GCAAACAAATAAGCTATCAAGAACAAA | 58.022 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
123 | 124 | 3.976704 | TGGGACACATCACCATTCC | 57.023 | 52.632 | 0.00 | 0.00 | 0.00 | 3.01 |
125 | 126 | 0.395724 | GGGACACATCACCATTCCCC | 60.396 | 60.000 | 0.00 | 0.00 | 40.24 | 4.81 |
133 | 134 | 4.223477 | CACATCACCATTCCCCAAAGAAAT | 59.777 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
142 | 143 | 4.569719 | TCCCCAAAGAAATAGGTCAGAC | 57.430 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
145 | 146 | 3.684788 | CCCAAAGAAATAGGTCAGACGTG | 59.315 | 47.826 | 6.00 | 0.00 | 0.00 | 4.49 |
149 | 150 | 2.000447 | GAAATAGGTCAGACGTGTGCC | 59.000 | 52.381 | 8.02 | 12.41 | 0.00 | 5.01 |
226 | 251 | 9.855021 | GCAATATGAAATACCAAGTACAAAACT | 57.145 | 29.630 | 0.00 | 0.00 | 41.49 | 2.66 |
238 | 263 | 1.981256 | ACAAAACTAGCTGTGGGTGG | 58.019 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
239 | 264 | 0.598065 | CAAAACTAGCTGTGGGTGGC | 59.402 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
240 | 265 | 0.184933 | AAAACTAGCTGTGGGTGGCA | 59.815 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
241 | 266 | 0.184933 | AAACTAGCTGTGGGTGGCAA | 59.815 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
242 | 267 | 0.405585 | AACTAGCTGTGGGTGGCAAT | 59.594 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
243 | 268 | 0.322816 | ACTAGCTGTGGGTGGCAATG | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 2.82 |
244 | 269 | 1.001020 | TAGCTGTGGGTGGCAATGG | 60.001 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
284 | 309 | 4.703897 | AGTTGCTGTTGTGCTCTTAACTA | 58.296 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
288 | 313 | 5.063204 | TGCTGTTGTGCTCTTAACTACATT | 58.937 | 37.500 | 0.00 | 0.00 | 33.81 | 2.71 |
289 | 314 | 5.530915 | TGCTGTTGTGCTCTTAACTACATTT | 59.469 | 36.000 | 0.00 | 0.00 | 33.81 | 2.32 |
342 | 367 | 6.426587 | ACATAATGTCCTTTCAAGGCACTAT | 58.573 | 36.000 | 0.10 | 0.55 | 46.06 | 2.12 |
454 | 479 | 3.069586 | TGGAGAGGTCAAGTTGTGTGTAG | 59.930 | 47.826 | 2.11 | 0.00 | 0.00 | 2.74 |
469 | 495 | 2.158740 | TGTGTAGTAAAACAGCCAGCCA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
483 | 509 | 2.027837 | GCCAGCCATTTTCCAGAACAAT | 60.028 | 45.455 | 0.00 | 0.00 | 0.00 | 2.71 |
501 | 527 | 4.553323 | ACAATCTCTGCAAAACATTCAGC | 58.447 | 39.130 | 0.00 | 0.00 | 0.00 | 4.26 |
502 | 528 | 3.863142 | ATCTCTGCAAAACATTCAGCC | 57.137 | 42.857 | 0.00 | 0.00 | 0.00 | 4.85 |
513 | 539 | 6.803807 | GCAAAACATTCAGCCTACTAAGAAAG | 59.196 | 38.462 | 0.00 | 0.00 | 0.00 | 2.62 |
522 | 548 | 6.154534 | TCAGCCTACTAAGAAAGTAATGCAGA | 59.845 | 38.462 | 0.00 | 4.36 | 40.21 | 4.26 |
582 | 608 | 7.321153 | TGATACTAACAGTTTGAGCTTCCTAC | 58.679 | 38.462 | 1.40 | 0.00 | 0.00 | 3.18 |
587 | 613 | 5.757850 | ACAGTTTGAGCTTCCTACTTTTG | 57.242 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
588 | 614 | 5.193679 | ACAGTTTGAGCTTCCTACTTTTGT | 58.806 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
589 | 615 | 6.354130 | ACAGTTTGAGCTTCCTACTTTTGTA | 58.646 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
590 | 616 | 6.260271 | ACAGTTTGAGCTTCCTACTTTTGTAC | 59.740 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
591 | 617 | 6.483640 | CAGTTTGAGCTTCCTACTTTTGTACT | 59.516 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
592 | 618 | 7.012421 | CAGTTTGAGCTTCCTACTTTTGTACTT | 59.988 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
593 | 619 | 7.226918 | AGTTTGAGCTTCCTACTTTTGTACTTC | 59.773 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
594 | 620 | 5.548406 | TGAGCTTCCTACTTTTGTACTTCC | 58.452 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
595 | 621 | 5.307196 | TGAGCTTCCTACTTTTGTACTTCCT | 59.693 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
596 | 622 | 5.795972 | AGCTTCCTACTTTTGTACTTCCTC | 58.204 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
597 | 623 | 5.544562 | AGCTTCCTACTTTTGTACTTCCTCT | 59.455 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
598 | 624 | 5.639931 | GCTTCCTACTTTTGTACTTCCTCTG | 59.360 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
599 | 625 | 6.741801 | GCTTCCTACTTTTGTACTTCCTCTGT | 60.742 | 42.308 | 0.00 | 0.00 | 0.00 | 3.41 |
600 | 626 | 7.525029 | GCTTCCTACTTTTGTACTTCCTCTGTA | 60.525 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
601 | 627 | 7.844493 | TCCTACTTTTGTACTTCCTCTGTAA | 57.156 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
602 | 628 | 8.253867 | TCCTACTTTTGTACTTCCTCTGTAAA | 57.746 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
603 | 629 | 8.146412 | TCCTACTTTTGTACTTCCTCTGTAAAC | 58.854 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
604 | 630 | 8.148999 | CCTACTTTTGTACTTCCTCTGTAAACT | 58.851 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
616 | 642 | 9.400638 | CTTCCTCTGTAAACTAATATAAGAGCG | 57.599 | 37.037 | 0.00 | 0.00 | 0.00 | 5.03 |
617 | 643 | 8.461249 | TCCTCTGTAAACTAATATAAGAGCGT | 57.539 | 34.615 | 0.00 | 0.00 | 0.00 | 5.07 |
618 | 644 | 8.910944 | TCCTCTGTAAACTAATATAAGAGCGTT | 58.089 | 33.333 | 0.00 | 0.00 | 0.00 | 4.84 |
619 | 645 | 9.530633 | CCTCTGTAAACTAATATAAGAGCGTTT | 57.469 | 33.333 | 0.00 | 0.00 | 0.00 | 3.60 |
649 | 675 | 6.885922 | ACTAAAATAGTGATCTAAACGCCCT | 58.114 | 36.000 | 0.00 | 0.00 | 37.69 | 5.19 |
650 | 676 | 7.336396 | ACTAAAATAGTGATCTAAACGCCCTT | 58.664 | 34.615 | 0.00 | 0.00 | 37.69 | 3.95 |
651 | 677 | 8.480501 | ACTAAAATAGTGATCTAAACGCCCTTA | 58.519 | 33.333 | 0.00 | 0.00 | 37.69 | 2.69 |
652 | 678 | 9.490379 | CTAAAATAGTGATCTAAACGCCCTTAT | 57.510 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
658 | 684 | 8.191534 | AGTGATCTAAACGCCCTTATATTAGT | 57.808 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
659 | 685 | 8.648693 | AGTGATCTAAACGCCCTTATATTAGTT | 58.351 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
660 | 686 | 9.269453 | GTGATCTAAACGCCCTTATATTAGTTT | 57.731 | 33.333 | 0.00 | 0.00 | 36.11 | 2.66 |
663 | 689 | 8.801715 | TCTAAACGCCCTTATATTAGTTTACG | 57.198 | 34.615 | 0.00 | 0.00 | 34.29 | 3.18 |
664 | 690 | 6.849588 | AAACGCCCTTATATTAGTTTACGG | 57.150 | 37.500 | 0.00 | 0.00 | 31.14 | 4.02 |
665 | 691 | 5.789643 | ACGCCCTTATATTAGTTTACGGA | 57.210 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
666 | 692 | 5.776744 | ACGCCCTTATATTAGTTTACGGAG | 58.223 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
667 | 693 | 5.166398 | CGCCCTTATATTAGTTTACGGAGG | 58.834 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
668 | 694 | 5.485620 | GCCCTTATATTAGTTTACGGAGGG | 58.514 | 45.833 | 0.00 | 0.00 | 43.30 | 4.30 |
669 | 695 | 5.246883 | GCCCTTATATTAGTTTACGGAGGGA | 59.753 | 44.000 | 8.71 | 0.00 | 43.15 | 4.20 |
670 | 696 | 6.573876 | GCCCTTATATTAGTTTACGGAGGGAG | 60.574 | 46.154 | 8.71 | 0.00 | 43.15 | 4.30 |
769 | 795 | 9.023967 | CAGGAAACTAAAATTCAACTTCTTGTG | 57.976 | 33.333 | 0.00 | 0.00 | 40.21 | 3.33 |
803 | 829 | 5.014858 | TGATACTAACAGTCCGAGTTTCCT | 58.985 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
850 | 877 | 5.012239 | AGCACAAGGAAATGATTAGCAGAA | 58.988 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
872 | 899 | 4.718961 | AGAACACAATCCAAGTACAGCTT | 58.281 | 39.130 | 0.00 | 0.00 | 38.08 | 3.74 |
1060 | 1100 | 3.599343 | TCCTTGTTCTTCATCACCATCG | 58.401 | 45.455 | 0.00 | 0.00 | 0.00 | 3.84 |
1069 | 1109 | 0.873312 | CATCACCATCGTCAGGCTCG | 60.873 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1074 | 1114 | 1.299014 | CATCGTCAGGCTCGAGCTC | 60.299 | 63.158 | 34.46 | 24.39 | 40.57 | 4.09 |
1088 | 1128 | 1.006598 | CGAGCTCGCTTTCTTGATTCG | 60.007 | 52.381 | 25.07 | 0.00 | 0.00 | 3.34 |
1162 | 1202 | 2.956333 | AGTTTTCGGGCAGCTTAAAAGT | 59.044 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
1198 | 1245 | 5.301805 | AGGTAAGCTATCTTCTGCTCTTCTC | 59.698 | 44.000 | 0.00 | 0.00 | 38.75 | 2.87 |
1207 | 1254 | 3.060736 | TCTGCTCTTCTCTACACGTCT | 57.939 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
1228 | 1278 | 6.698329 | CGTCTTGTGTTGTATATAATTCCGGA | 59.302 | 38.462 | 0.00 | 0.00 | 0.00 | 5.14 |
1250 | 1300 | 5.707764 | GGACCTCTGAGAAGCTTTTGTTTAT | 59.292 | 40.000 | 6.17 | 0.00 | 0.00 | 1.40 |
1253 | 1303 | 6.944862 | ACCTCTGAGAAGCTTTTGTTTATCAT | 59.055 | 34.615 | 6.17 | 0.00 | 39.44 | 2.45 |
1255 | 1305 | 7.149569 | TCTGAGAAGCTTTTGTTTATCATGG | 57.850 | 36.000 | 0.00 | 0.00 | 39.44 | 3.66 |
1407 | 1457 | 2.122783 | TGGCGGTAAAGATGAAAGGG | 57.877 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1452 | 1505 | 5.539582 | TCTCGCACATGTTTGGTAATAAC | 57.460 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
1461 | 1514 | 6.379988 | ACATGTTTGGTAATAACCCCATCTTC | 59.620 | 38.462 | 0.00 | 0.00 | 46.16 | 2.87 |
1486 | 1539 | 0.765135 | TTGTTCCTCGGTCCTCCCAA | 60.765 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
1487 | 1540 | 1.295746 | GTTCCTCGGTCCTCCCAAC | 59.704 | 63.158 | 0.00 | 0.00 | 0.00 | 3.77 |
1489 | 1542 | 0.473117 | TTCCTCGGTCCTCCCAACTT | 60.473 | 55.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1490 | 1543 | 0.903454 | TCCTCGGTCCTCCCAACTTC | 60.903 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1492 | 1545 | 0.685097 | CTCGGTCCTCCCAACTTCAA | 59.315 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1494 | 1547 | 1.702957 | TCGGTCCTCCCAACTTCAAAT | 59.297 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
1495 | 1548 | 2.907696 | TCGGTCCTCCCAACTTCAAATA | 59.092 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
1496 | 1549 | 3.007635 | CGGTCCTCCCAACTTCAAATAC | 58.992 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
1498 | 1551 | 4.010349 | GGTCCTCCCAACTTCAAATACAG | 58.990 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
1499 | 1552 | 4.506802 | GGTCCTCCCAACTTCAAATACAGT | 60.507 | 45.833 | 0.00 | 0.00 | 0.00 | 3.55 |
1500 | 1553 | 5.070685 | GTCCTCCCAACTTCAAATACAGTT | 58.929 | 41.667 | 0.00 | 0.00 | 33.29 | 3.16 |
1501 | 1554 | 6.235664 | GTCCTCCCAACTTCAAATACAGTTA | 58.764 | 40.000 | 0.00 | 0.00 | 31.78 | 2.24 |
1502 | 1555 | 6.884836 | GTCCTCCCAACTTCAAATACAGTTAT | 59.115 | 38.462 | 0.00 | 0.00 | 31.78 | 1.89 |
1503 | 1556 | 6.884295 | TCCTCCCAACTTCAAATACAGTTATG | 59.116 | 38.462 | 0.00 | 0.00 | 31.78 | 1.90 |
1504 | 1557 | 6.659242 | CCTCCCAACTTCAAATACAGTTATGT | 59.341 | 38.462 | 0.00 | 0.00 | 43.76 | 2.29 |
1505 | 1558 | 7.176690 | CCTCCCAACTTCAAATACAGTTATGTT | 59.823 | 37.037 | 0.00 | 0.00 | 41.01 | 2.71 |
1506 | 1559 | 7.881142 | TCCCAACTTCAAATACAGTTATGTTG | 58.119 | 34.615 | 0.00 | 0.00 | 41.01 | 3.33 |
1507 | 1560 | 7.040062 | TCCCAACTTCAAATACAGTTATGTTGG | 60.040 | 37.037 | 12.44 | 12.44 | 46.49 | 3.77 |
1508 | 1561 | 7.255801 | CCCAACTTCAAATACAGTTATGTTGGT | 60.256 | 37.037 | 16.45 | 0.00 | 45.89 | 3.67 |
1509 | 1562 | 8.141268 | CCAACTTCAAATACAGTTATGTTGGTT | 58.859 | 33.333 | 11.50 | 0.00 | 43.76 | 3.67 |
1510 | 1563 | 9.528018 | CAACTTCAAATACAGTTATGTTGGTTT | 57.472 | 29.630 | 0.00 | 0.00 | 41.01 | 3.27 |
1618 | 1729 | 1.330655 | ACCACTGAGCTATGGACCCG | 61.331 | 60.000 | 16.14 | 0.00 | 39.46 | 5.28 |
1621 | 1732 | 0.537188 | ACTGAGCTATGGACCCGTTG | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.10 |
1630 | 1741 | 4.578928 | GCTATGGACCCGTTGTATGAATTT | 59.421 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
1632 | 1743 | 4.775058 | TGGACCCGTTGTATGAATTTTG | 57.225 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
1638 | 1749 | 7.083875 | ACCCGTTGTATGAATTTTGTGATAG | 57.916 | 36.000 | 0.00 | 0.00 | 0.00 | 2.08 |
1642 | 1753 | 9.864034 | CCGTTGTATGAATTTTGTGATAGATAC | 57.136 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
1662 | 1774 | 3.926616 | ACATGTACTCAACTACTGTGCC | 58.073 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
1729 | 1841 | 7.246674 | ACTTACACATGTAACTGTTGTTCTG | 57.753 | 36.000 | 0.00 | 0.00 | 35.75 | 3.02 |
1761 | 1873 | 5.359009 | TCAAAAGGAGCATGAGATGGAAATC | 59.641 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1854 | 1966 | 7.151976 | GGGTAAACATGCAAATAACTTGAAGT | 58.848 | 34.615 | 0.00 | 0.00 | 37.17 | 3.01 |
1947 | 2063 | 5.066117 | GTCGTCTAGTATTGTCACTGATGGA | 59.934 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1960 | 2076 | 5.297527 | GTCACTGATGGATAATGTGCATTGA | 59.702 | 40.000 | 7.60 | 0.00 | 39.19 | 2.57 |
1987 | 2103 | 8.659491 | TCATTTTAGATGAATGAGTTCAAGTCG | 58.341 | 33.333 | 0.00 | 0.00 | 46.67 | 4.18 |
1997 | 2113 | 5.959618 | TGAGTTCAAGTCGTCAGAAGATA | 57.040 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
1999 | 2115 | 6.325596 | TGAGTTCAAGTCGTCAGAAGATATG | 58.674 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
2195 | 2311 | 3.495377 | TCCACCGTAAAAGTTTCACATCG | 59.505 | 43.478 | 0.00 | 0.00 | 0.00 | 3.84 |
2199 | 2315 | 4.751098 | ACCGTAAAAGTTTCACATCGCTTA | 59.249 | 37.500 | 0.00 | 0.00 | 0.00 | 3.09 |
2212 | 2363 | 4.147133 | CACATCGCTTATATGTCAGTGTCG | 59.853 | 45.833 | 0.00 | 0.00 | 35.39 | 4.35 |
2480 | 2705 | 1.022735 | CCATGCTGCCAACTGAGATC | 58.977 | 55.000 | 0.00 | 0.00 | 0.00 | 2.75 |
2501 | 2726 | 0.036010 | ATTTCCCAGACAGACCAGCG | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
2660 | 2885 | 1.807573 | CGAGTCGCAAAGAGGGCTC | 60.808 | 63.158 | 0.00 | 0.00 | 33.33 | 4.70 |
2778 | 3012 | 3.506067 | GTCCAGTTTAACAGATGGTTGGG | 59.494 | 47.826 | 0.00 | 0.00 | 40.73 | 4.12 |
2806 | 3040 | 5.625311 | GCAAAAGTAAGTTGGAAGTTGATCG | 59.375 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2813 | 3047 | 5.362556 | AGTTGGAAGTTGATCGATGTTTG | 57.637 | 39.130 | 0.54 | 0.00 | 0.00 | 2.93 |
2814 | 3048 | 4.821805 | AGTTGGAAGTTGATCGATGTTTGT | 59.178 | 37.500 | 0.54 | 0.00 | 0.00 | 2.83 |
2836 | 3070 | 5.123186 | TGTTGTCCATAAAGCTTTGGTATCG | 59.877 | 40.000 | 22.02 | 0.41 | 34.48 | 2.92 |
2838 | 3072 | 2.869801 | TCCATAAAGCTTTGGTATCGCG | 59.130 | 45.455 | 22.02 | 0.00 | 34.48 | 5.87 |
2880 | 3114 | 6.153067 | TCACATTGTTTTTCAAAGACACGTT | 58.847 | 32.000 | 0.00 | 0.00 | 39.62 | 3.99 |
2890 | 3124 | 9.674824 | TTTTTCAAAGACACGTTACTGTAAAAA | 57.325 | 25.926 | 1.10 | 1.07 | 0.00 | 1.94 |
3079 | 3313 | 2.294233 | TCACTTTGTTCAAGAGCCATGC | 59.706 | 45.455 | 0.00 | 0.00 | 36.21 | 4.06 |
3092 | 3326 | 0.807496 | GCCATGCACTTCCTTCAGAC | 59.193 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3094 | 3328 | 2.082231 | CCATGCACTTCCTTCAGACAG | 58.918 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
3095 | 3329 | 2.289882 | CCATGCACTTCCTTCAGACAGA | 60.290 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3101 | 3336 | 4.635223 | CACTTCCTTCAGACAGAACATGA | 58.365 | 43.478 | 0.00 | 0.00 | 31.61 | 3.07 |
3104 | 3339 | 5.540337 | ACTTCCTTCAGACAGAACATGACTA | 59.460 | 40.000 | 0.00 | 0.00 | 32.40 | 2.59 |
3129 | 3364 | 3.443045 | GGGCTGCCACATTGGTCG | 61.443 | 66.667 | 22.05 | 0.00 | 40.46 | 4.79 |
3214 | 3449 | 1.544314 | GCAGCCTGTCTTCCTTGAACT | 60.544 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
3215 | 3450 | 2.856222 | CAGCCTGTCTTCCTTGAACTT | 58.144 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
3216 | 3451 | 2.551459 | CAGCCTGTCTTCCTTGAACTTG | 59.449 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3217 | 3452 | 1.882623 | GCCTGTCTTCCTTGAACTTGG | 59.117 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
3233 | 3468 | 6.454795 | TGAACTTGGGTGAAGCATATTTTTC | 58.545 | 36.000 | 0.00 | 0.00 | 34.68 | 2.29 |
3294 | 3530 | 3.312828 | GCAGATGCACGAAGATAGGTAG | 58.687 | 50.000 | 0.00 | 0.00 | 41.59 | 3.18 |
3325 | 3588 | 6.237648 | CCAAAACATTGCGAGAATCTTATTGC | 60.238 | 38.462 | 0.00 | 0.00 | 0.00 | 3.56 |
3328 | 3591 | 4.332543 | ACATTGCGAGAATCTTATTGCGAA | 59.667 | 37.500 | 0.00 | 0.00 | 31.51 | 4.70 |
3352 | 3615 | 3.876309 | AAGGTAAAGTGAGGCAAGGAA | 57.124 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
3353 | 3616 | 4.388577 | AAGGTAAAGTGAGGCAAGGAAT | 57.611 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
3425 | 3716 | 3.276857 | CAGCAAGAATCCTGTGCTATGT | 58.723 | 45.455 | 3.80 | 0.00 | 46.66 | 2.29 |
3492 | 3787 | 6.939730 | AGAAGACTTTCTGAAGGATTCCTTTC | 59.060 | 38.462 | 18.89 | 10.53 | 46.93 | 2.62 |
3496 | 3791 | 6.605119 | ACTTTCTGAAGGATTCCTTTCTCAA | 58.395 | 36.000 | 18.89 | 9.41 | 46.93 | 3.02 |
3519 | 3814 | 4.166725 | AGTCATATTTGGGAGAAGCATGGA | 59.833 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
3552 | 3849 | 1.589716 | GCTGGCTTCACGCTCCATTT | 61.590 | 55.000 | 0.00 | 0.00 | 39.13 | 2.32 |
3553 | 3850 | 0.883833 | CTGGCTTCACGCTCCATTTT | 59.116 | 50.000 | 0.00 | 0.00 | 39.13 | 1.82 |
3586 | 3886 | 1.135315 | CATCGCGGTTTGAGCCTTG | 59.865 | 57.895 | 6.13 | 0.00 | 0.00 | 3.61 |
3601 | 3901 | 4.113354 | GAGCCTTGTAGTCTTTATGACCG | 58.887 | 47.826 | 0.00 | 0.00 | 46.46 | 4.79 |
3644 | 3944 | 6.628644 | AGGAGGCTTTATTACCTGGATATC | 57.371 | 41.667 | 0.00 | 0.00 | 36.05 | 1.63 |
3674 | 3974 | 9.774071 | AAGTTTAGTACTAACCCTAATCCACTA | 57.226 | 33.333 | 14.96 | 0.00 | 35.54 | 2.74 |
3688 | 3988 | 6.320164 | CCTAATCCACTATGCTAGCCTAGTAG | 59.680 | 46.154 | 26.13 | 20.93 | 0.00 | 2.57 |
3690 | 3990 | 5.837770 | TCCACTATGCTAGCCTAGTAGTA | 57.162 | 43.478 | 26.13 | 14.90 | 0.00 | 1.82 |
3691 | 3991 | 5.558818 | TCCACTATGCTAGCCTAGTAGTAC | 58.441 | 45.833 | 26.13 | 0.00 | 0.00 | 2.73 |
3692 | 3992 | 5.310068 | TCCACTATGCTAGCCTAGTAGTACT | 59.690 | 44.000 | 26.13 | 8.14 | 0.00 | 2.73 |
3693 | 3993 | 6.499699 | TCCACTATGCTAGCCTAGTAGTACTA | 59.500 | 42.308 | 26.13 | 9.66 | 0.00 | 1.82 |
3694 | 3994 | 7.016957 | TCCACTATGCTAGCCTAGTAGTACTAA | 59.983 | 40.741 | 26.13 | 6.22 | 29.00 | 2.24 |
3697 | 3997 | 9.810870 | ACTATGCTAGCCTAGTAGTACTAAAAT | 57.189 | 33.333 | 25.64 | 4.86 | 29.00 | 1.82 |
3717 | 4305 | 6.628919 | AAATCCAACGCTGTACTAGTTTTT | 57.371 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
3757 | 4345 | 0.106149 | ACTGGTTGGACCGAACACTC | 59.894 | 55.000 | 0.00 | 0.00 | 42.58 | 3.51 |
3797 | 4385 | 9.962783 | CATAGTTGTACTAGTAAATCACCCTAC | 57.037 | 37.037 | 3.61 | 0.00 | 33.66 | 3.18 |
3822 | 4410 | 0.601558 | TTAGACACTGCTCCGTGGTC | 59.398 | 55.000 | 6.38 | 0.00 | 39.19 | 4.02 |
3826 | 4414 | 2.203640 | ACTGCTCCGTGGTCTGGA | 60.204 | 61.111 | 0.00 | 0.00 | 0.00 | 3.86 |
3830 | 4418 | 0.250295 | TGCTCCGTGGTCTGGAAAAG | 60.250 | 55.000 | 0.00 | 0.00 | 34.44 | 2.27 |
3835 | 4426 | 2.143925 | CCGTGGTCTGGAAAAGAACTC | 58.856 | 52.381 | 0.00 | 0.00 | 43.71 | 3.01 |
3838 | 4429 | 3.243907 | CGTGGTCTGGAAAAGAACTCTCT | 60.244 | 47.826 | 0.00 | 0.00 | 43.71 | 3.10 |
3852 | 4443 | 4.747605 | AGAACTCTCTTTTTCTCTGTTCGC | 59.252 | 41.667 | 0.00 | 0.00 | 37.82 | 4.70 |
3856 | 4447 | 2.404215 | TCTTTTTCTCTGTTCGCCTCG | 58.596 | 47.619 | 0.00 | 0.00 | 0.00 | 4.63 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 6.101332 | TGAAATTTTCTAACCATGCAGCATC | 58.899 | 36.000 | 4.38 | 0.00 | 0.00 | 3.91 |
1 | 2 | 6.040209 | TGAAATTTTCTAACCATGCAGCAT | 57.960 | 33.333 | 0.52 | 0.52 | 0.00 | 3.79 |
2 | 3 | 5.465532 | TGAAATTTTCTAACCATGCAGCA | 57.534 | 34.783 | 10.33 | 0.00 | 0.00 | 4.41 |
3 | 4 | 5.292589 | CCATGAAATTTTCTAACCATGCAGC | 59.707 | 40.000 | 10.33 | 0.00 | 32.43 | 5.25 |
4 | 5 | 5.292589 | GCCATGAAATTTTCTAACCATGCAG | 59.707 | 40.000 | 10.33 | 0.91 | 32.43 | 4.41 |
5 | 6 | 5.177326 | GCCATGAAATTTTCTAACCATGCA | 58.823 | 37.500 | 10.33 | 0.00 | 32.43 | 3.96 |
6 | 7 | 5.177326 | TGCCATGAAATTTTCTAACCATGC | 58.823 | 37.500 | 10.33 | 6.39 | 32.43 | 4.06 |
7 | 8 | 6.632909 | TCTGCCATGAAATTTTCTAACCATG | 58.367 | 36.000 | 10.33 | 7.84 | 33.28 | 3.66 |
8 | 9 | 6.855763 | TCTGCCATGAAATTTTCTAACCAT | 57.144 | 33.333 | 10.33 | 0.00 | 0.00 | 3.55 |
9 | 10 | 6.662865 | TTCTGCCATGAAATTTTCTAACCA | 57.337 | 33.333 | 10.33 | 2.88 | 0.00 | 3.67 |
10 | 11 | 5.578336 | GCTTCTGCCATGAAATTTTCTAACC | 59.422 | 40.000 | 10.33 | 0.00 | 0.00 | 2.85 |
11 | 12 | 6.089954 | GTGCTTCTGCCATGAAATTTTCTAAC | 59.910 | 38.462 | 10.33 | 0.00 | 38.71 | 2.34 |
12 | 13 | 6.158598 | GTGCTTCTGCCATGAAATTTTCTAA | 58.841 | 36.000 | 10.33 | 0.00 | 38.71 | 2.10 |
13 | 14 | 5.619757 | CGTGCTTCTGCCATGAAATTTTCTA | 60.620 | 40.000 | 10.33 | 0.00 | 38.71 | 2.10 |
14 | 15 | 4.563061 | GTGCTTCTGCCATGAAATTTTCT | 58.437 | 39.130 | 10.33 | 0.00 | 38.71 | 2.52 |
15 | 16 | 3.365820 | CGTGCTTCTGCCATGAAATTTTC | 59.634 | 43.478 | 2.05 | 2.05 | 38.71 | 2.29 |
16 | 17 | 3.319755 | CGTGCTTCTGCCATGAAATTTT | 58.680 | 40.909 | 0.00 | 0.00 | 38.71 | 1.82 |
17 | 18 | 2.927871 | GCGTGCTTCTGCCATGAAATTT | 60.928 | 45.455 | 0.00 | 0.00 | 38.71 | 1.82 |
18 | 19 | 1.403249 | GCGTGCTTCTGCCATGAAATT | 60.403 | 47.619 | 0.00 | 0.00 | 38.71 | 1.82 |
19 | 20 | 0.171903 | GCGTGCTTCTGCCATGAAAT | 59.828 | 50.000 | 0.00 | 0.00 | 38.71 | 2.17 |
20 | 21 | 1.171549 | TGCGTGCTTCTGCCATGAAA | 61.172 | 50.000 | 0.00 | 0.00 | 38.71 | 2.69 |
21 | 22 | 1.171549 | TTGCGTGCTTCTGCCATGAA | 61.172 | 50.000 | 0.00 | 0.00 | 38.71 | 2.57 |
22 | 23 | 1.579964 | CTTGCGTGCTTCTGCCATGA | 61.580 | 55.000 | 0.00 | 0.00 | 38.71 | 3.07 |
23 | 24 | 1.154093 | CTTGCGTGCTTCTGCCATG | 60.154 | 57.895 | 0.00 | 0.00 | 38.71 | 3.66 |
24 | 25 | 2.986306 | GCTTGCGTGCTTCTGCCAT | 61.986 | 57.895 | 0.00 | 0.00 | 38.71 | 4.40 |
25 | 26 | 3.663176 | GCTTGCGTGCTTCTGCCA | 61.663 | 61.111 | 0.00 | 0.00 | 38.71 | 4.92 |
26 | 27 | 2.682256 | TTTGCTTGCGTGCTTCTGCC | 62.682 | 55.000 | 2.56 | 0.00 | 38.71 | 4.85 |
27 | 28 | 1.273455 | CTTTGCTTGCGTGCTTCTGC | 61.273 | 55.000 | 2.56 | 0.00 | 40.20 | 4.26 |
28 | 29 | 0.308684 | TCTTTGCTTGCGTGCTTCTG | 59.691 | 50.000 | 2.56 | 0.00 | 0.00 | 3.02 |
29 | 30 | 1.002033 | CTTCTTTGCTTGCGTGCTTCT | 60.002 | 47.619 | 2.56 | 0.00 | 0.00 | 2.85 |
30 | 31 | 1.002468 | TCTTCTTTGCTTGCGTGCTTC | 60.002 | 47.619 | 2.56 | 0.00 | 0.00 | 3.86 |
31 | 32 | 1.024271 | TCTTCTTTGCTTGCGTGCTT | 58.976 | 45.000 | 2.56 | 0.00 | 0.00 | 3.91 |
32 | 33 | 1.242076 | ATCTTCTTTGCTTGCGTGCT | 58.758 | 45.000 | 2.56 | 0.00 | 0.00 | 4.40 |
33 | 34 | 2.900122 | TATCTTCTTTGCTTGCGTGC | 57.100 | 45.000 | 0.00 | 0.00 | 0.00 | 5.34 |
34 | 35 | 3.545078 | GCATTATCTTCTTTGCTTGCGTG | 59.455 | 43.478 | 0.00 | 0.00 | 32.41 | 5.34 |
35 | 36 | 3.191162 | TGCATTATCTTCTTTGCTTGCGT | 59.809 | 39.130 | 0.00 | 0.00 | 36.10 | 5.24 |
36 | 37 | 3.761657 | TGCATTATCTTCTTTGCTTGCG | 58.238 | 40.909 | 0.00 | 0.00 | 36.10 | 4.85 |
37 | 38 | 5.166398 | ACTTGCATTATCTTCTTTGCTTGC | 58.834 | 37.500 | 0.00 | 0.00 | 36.10 | 4.01 |
38 | 39 | 7.647907 | AAACTTGCATTATCTTCTTTGCTTG | 57.352 | 32.000 | 0.00 | 0.00 | 36.10 | 4.01 |
39 | 40 | 9.933723 | ATAAAACTTGCATTATCTTCTTTGCTT | 57.066 | 25.926 | 0.00 | 0.00 | 36.10 | 3.91 |
40 | 41 | 9.362539 | CATAAAACTTGCATTATCTTCTTTGCT | 57.637 | 29.630 | 0.00 | 0.00 | 36.10 | 3.91 |
41 | 42 | 8.598075 | CCATAAAACTTGCATTATCTTCTTTGC | 58.402 | 33.333 | 0.00 | 0.00 | 35.67 | 3.68 |
42 | 43 | 8.598075 | GCCATAAAACTTGCATTATCTTCTTTG | 58.402 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
43 | 44 | 8.313292 | TGCCATAAAACTTGCATTATCTTCTTT | 58.687 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
44 | 45 | 7.839907 | TGCCATAAAACTTGCATTATCTTCTT | 58.160 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
45 | 46 | 7.408756 | TGCCATAAAACTTGCATTATCTTCT | 57.591 | 32.000 | 0.00 | 0.00 | 0.00 | 2.85 |
46 | 47 | 8.382875 | GTTTGCCATAAAACTTGCATTATCTTC | 58.617 | 33.333 | 0.00 | 0.00 | 37.13 | 2.87 |
47 | 48 | 7.877097 | TGTTTGCCATAAAACTTGCATTATCTT | 59.123 | 29.630 | 0.00 | 0.00 | 40.11 | 2.40 |
48 | 49 | 7.385267 | TGTTTGCCATAAAACTTGCATTATCT | 58.615 | 30.769 | 0.00 | 0.00 | 40.11 | 1.98 |
49 | 50 | 7.593875 | TGTTTGCCATAAAACTTGCATTATC | 57.406 | 32.000 | 0.00 | 0.00 | 40.11 | 1.75 |
50 | 51 | 7.976135 | TTGTTTGCCATAAAACTTGCATTAT | 57.024 | 28.000 | 0.00 | 0.00 | 40.11 | 1.28 |
51 | 52 | 7.792374 | TTTGTTTGCCATAAAACTTGCATTA | 57.208 | 28.000 | 0.00 | 0.00 | 40.11 | 1.90 |
52 | 53 | 6.690194 | TTTGTTTGCCATAAAACTTGCATT | 57.310 | 29.167 | 0.00 | 0.00 | 40.11 | 3.56 |
53 | 54 | 6.880942 | ATTTGTTTGCCATAAAACTTGCAT | 57.119 | 29.167 | 0.00 | 0.00 | 40.11 | 3.96 |
54 | 55 | 7.519649 | GCTTATTTGTTTGCCATAAAACTTGCA | 60.520 | 33.333 | 1.95 | 0.00 | 40.11 | 4.08 |
55 | 56 | 6.796552 | GCTTATTTGTTTGCCATAAAACTTGC | 59.203 | 34.615 | 1.95 | 0.00 | 40.11 | 4.01 |
56 | 57 | 8.086851 | AGCTTATTTGTTTGCCATAAAACTTG | 57.913 | 30.769 | 1.95 | 0.00 | 40.11 | 3.16 |
57 | 58 | 9.942850 | ATAGCTTATTTGTTTGCCATAAAACTT | 57.057 | 25.926 | 0.00 | 0.00 | 40.11 | 2.66 |
58 | 59 | 9.586435 | GATAGCTTATTTGTTTGCCATAAAACT | 57.414 | 29.630 | 0.00 | 0.00 | 40.11 | 2.66 |
59 | 60 | 9.364989 | TGATAGCTTATTTGTTTGCCATAAAAC | 57.635 | 29.630 | 0.00 | 0.00 | 39.90 | 2.43 |
60 | 61 | 9.935241 | TTGATAGCTTATTTGTTTGCCATAAAA | 57.065 | 25.926 | 0.00 | 0.00 | 0.00 | 1.52 |
61 | 62 | 9.585099 | CTTGATAGCTTATTTGTTTGCCATAAA | 57.415 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
62 | 63 | 8.965819 | TCTTGATAGCTTATTTGTTTGCCATAA | 58.034 | 29.630 | 0.00 | 0.00 | 0.00 | 1.90 |
63 | 64 | 8.518430 | TCTTGATAGCTTATTTGTTTGCCATA | 57.482 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
64 | 65 | 7.408756 | TCTTGATAGCTTATTTGTTTGCCAT | 57.591 | 32.000 | 0.00 | 0.00 | 0.00 | 4.40 |
65 | 66 | 6.832520 | TCTTGATAGCTTATTTGTTTGCCA | 57.167 | 33.333 | 0.00 | 0.00 | 0.00 | 4.92 |
66 | 67 | 7.090173 | TGTTCTTGATAGCTTATTTGTTTGCC | 58.910 | 34.615 | 0.00 | 0.00 | 0.00 | 4.52 |
67 | 68 | 8.519492 | TTGTTCTTGATAGCTTATTTGTTTGC | 57.481 | 30.769 | 0.00 | 0.00 | 0.00 | 3.68 |
77 | 78 | 9.412460 | TCCATCAATATTTGTTCTTGATAGCTT | 57.588 | 29.630 | 0.00 | 0.00 | 37.48 | 3.74 |
78 | 79 | 8.985315 | TCCATCAATATTTGTTCTTGATAGCT | 57.015 | 30.769 | 0.00 | 0.00 | 37.48 | 3.32 |
82 | 83 | 8.426489 | CCCATTCCATCAATATTTGTTCTTGAT | 58.574 | 33.333 | 0.00 | 0.00 | 39.55 | 2.57 |
83 | 84 | 7.618907 | TCCCATTCCATCAATATTTGTTCTTGA | 59.381 | 33.333 | 0.00 | 0.00 | 33.75 | 3.02 |
84 | 85 | 7.707893 | GTCCCATTCCATCAATATTTGTTCTTG | 59.292 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
85 | 86 | 7.399765 | TGTCCCATTCCATCAATATTTGTTCTT | 59.600 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
86 | 87 | 6.896860 | TGTCCCATTCCATCAATATTTGTTCT | 59.103 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
87 | 88 | 6.980397 | GTGTCCCATTCCATCAATATTTGTTC | 59.020 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
88 | 89 | 6.440010 | TGTGTCCCATTCCATCAATATTTGTT | 59.560 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
89 | 90 | 5.957168 | TGTGTCCCATTCCATCAATATTTGT | 59.043 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
90 | 91 | 6.468333 | TGTGTCCCATTCCATCAATATTTG | 57.532 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
91 | 92 | 6.840181 | TGATGTGTCCCATTCCATCAATATTT | 59.160 | 34.615 | 0.00 | 0.00 | 40.36 | 1.40 |
92 | 93 | 6.266103 | GTGATGTGTCCCATTCCATCAATATT | 59.734 | 38.462 | 3.01 | 0.00 | 43.66 | 1.28 |
93 | 94 | 5.771666 | GTGATGTGTCCCATTCCATCAATAT | 59.228 | 40.000 | 3.01 | 0.00 | 43.66 | 1.28 |
94 | 95 | 5.132502 | GTGATGTGTCCCATTCCATCAATA | 58.867 | 41.667 | 3.01 | 0.00 | 43.66 | 1.90 |
95 | 96 | 3.956199 | GTGATGTGTCCCATTCCATCAAT | 59.044 | 43.478 | 3.01 | 0.00 | 43.66 | 2.57 |
96 | 97 | 3.355378 | GTGATGTGTCCCATTCCATCAA | 58.645 | 45.455 | 3.01 | 0.00 | 43.66 | 2.57 |
97 | 98 | 2.357050 | GGTGATGTGTCCCATTCCATCA | 60.357 | 50.000 | 0.00 | 0.00 | 40.87 | 3.07 |
121 | 122 | 3.055385 | CGTCTGACCTATTTCTTTGGGGA | 60.055 | 47.826 | 1.55 | 0.00 | 0.00 | 4.81 |
123 | 124 | 3.684788 | CACGTCTGACCTATTTCTTTGGG | 59.315 | 47.826 | 1.55 | 0.00 | 0.00 | 4.12 |
125 | 126 | 4.377431 | GCACACGTCTGACCTATTTCTTTG | 60.377 | 45.833 | 1.55 | 0.00 | 0.00 | 2.77 |
133 | 134 | 1.583495 | CGAGGCACACGTCTGACCTA | 61.583 | 60.000 | 1.55 | 0.00 | 37.71 | 3.08 |
145 | 146 | 1.301677 | CCTCCTTTCTTGCGAGGCAC | 61.302 | 60.000 | 0.00 | 0.00 | 38.71 | 5.01 |
149 | 150 | 1.273606 | TGAGACCTCCTTTCTTGCGAG | 59.726 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
190 | 191 | 9.851686 | TTGGTATTTCATATTGCTGAACTAGAT | 57.148 | 29.630 | 0.00 | 0.00 | 34.96 | 1.98 |
226 | 251 | 1.001020 | CCATTGCCACCCACAGCTA | 60.001 | 57.895 | 0.00 | 0.00 | 0.00 | 3.32 |
238 | 263 | 2.482490 | GGACCATCTGAAATGCCATTGC | 60.482 | 50.000 | 0.00 | 0.00 | 38.26 | 3.56 |
239 | 264 | 2.761767 | TGGACCATCTGAAATGCCATTG | 59.238 | 45.455 | 0.00 | 0.00 | 0.00 | 2.82 |
240 | 265 | 3.104519 | TGGACCATCTGAAATGCCATT | 57.895 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
241 | 266 | 2.832643 | TGGACCATCTGAAATGCCAT | 57.167 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
242 | 267 | 2.601240 | TTGGACCATCTGAAATGCCA | 57.399 | 45.000 | 0.00 | 0.00 | 0.00 | 4.92 |
243 | 268 | 2.827921 | ACTTTGGACCATCTGAAATGCC | 59.172 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
244 | 269 | 4.240096 | CAACTTTGGACCATCTGAAATGC | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
284 | 309 | 7.573710 | TGGTATTAGGTAGCATTGAGAAATGT | 58.426 | 34.615 | 0.00 | 0.00 | 35.96 | 2.71 |
288 | 313 | 5.130311 | TGCTGGTATTAGGTAGCATTGAGAA | 59.870 | 40.000 | 0.00 | 0.00 | 40.88 | 2.87 |
289 | 314 | 4.653801 | TGCTGGTATTAGGTAGCATTGAGA | 59.346 | 41.667 | 0.00 | 0.00 | 40.88 | 3.27 |
342 | 367 | 2.575735 | TGTGGCTCATGGTCCTTAATCA | 59.424 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
454 | 479 | 3.244044 | TGGAAAATGGCTGGCTGTTTTAC | 60.244 | 43.478 | 15.49 | 15.49 | 0.00 | 2.01 |
483 | 509 | 2.867624 | AGGCTGAATGTTTTGCAGAGA | 58.132 | 42.857 | 0.00 | 0.00 | 0.00 | 3.10 |
575 | 601 | 6.760291 | ACAGAGGAAGTACAAAAGTAGGAAG | 58.240 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
590 | 616 | 9.400638 | CGCTCTTATATTAGTTTACAGAGGAAG | 57.599 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
591 | 617 | 8.910944 | ACGCTCTTATATTAGTTTACAGAGGAA | 58.089 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
592 | 618 | 8.461249 | ACGCTCTTATATTAGTTTACAGAGGA | 57.539 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
593 | 619 | 9.530633 | AAACGCTCTTATATTAGTTTACAGAGG | 57.469 | 33.333 | 0.00 | 0.00 | 31.14 | 3.69 |
625 | 651 | 6.885922 | AGGGCGTTTAGATCACTATTTTAGT | 58.114 | 36.000 | 0.00 | 0.00 | 40.28 | 2.24 |
626 | 652 | 7.787725 | AAGGGCGTTTAGATCACTATTTTAG | 57.212 | 36.000 | 0.00 | 0.00 | 0.00 | 1.85 |
632 | 658 | 9.305555 | ACTAATATAAGGGCGTTTAGATCACTA | 57.694 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
633 | 659 | 8.191534 | ACTAATATAAGGGCGTTTAGATCACT | 57.808 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
634 | 660 | 8.828688 | AACTAATATAAGGGCGTTTAGATCAC | 57.171 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
637 | 663 | 9.415544 | CGTAAACTAATATAAGGGCGTTTAGAT | 57.584 | 33.333 | 0.00 | 0.00 | 30.36 | 1.98 |
638 | 664 | 7.867403 | CCGTAAACTAATATAAGGGCGTTTAGA | 59.133 | 37.037 | 0.00 | 0.00 | 30.36 | 2.10 |
639 | 665 | 7.867403 | TCCGTAAACTAATATAAGGGCGTTTAG | 59.133 | 37.037 | 0.00 | 0.00 | 30.36 | 1.85 |
640 | 666 | 7.721402 | TCCGTAAACTAATATAAGGGCGTTTA | 58.279 | 34.615 | 0.00 | 0.00 | 0.00 | 2.01 |
641 | 667 | 6.581712 | TCCGTAAACTAATATAAGGGCGTTT | 58.418 | 36.000 | 0.00 | 0.00 | 0.00 | 3.60 |
642 | 668 | 6.160576 | TCCGTAAACTAATATAAGGGCGTT | 57.839 | 37.500 | 0.00 | 0.00 | 0.00 | 4.84 |
643 | 669 | 5.279156 | CCTCCGTAAACTAATATAAGGGCGT | 60.279 | 44.000 | 0.00 | 0.00 | 0.00 | 5.68 |
644 | 670 | 5.166398 | CCTCCGTAAACTAATATAAGGGCG | 58.834 | 45.833 | 0.00 | 0.00 | 0.00 | 6.13 |
645 | 671 | 5.246883 | TCCCTCCGTAAACTAATATAAGGGC | 59.753 | 44.000 | 0.00 | 0.00 | 40.64 | 5.19 |
646 | 672 | 6.496218 | ACTCCCTCCGTAAACTAATATAAGGG | 59.504 | 42.308 | 0.00 | 0.00 | 41.93 | 3.95 |
647 | 673 | 7.536159 | ACTCCCTCCGTAAACTAATATAAGG | 57.464 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
649 | 675 | 9.812347 | TGATACTCCCTCCGTAAACTAATATAA | 57.188 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
650 | 676 | 9.986157 | ATGATACTCCCTCCGTAAACTAATATA | 57.014 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
651 | 677 | 8.896722 | ATGATACTCCCTCCGTAAACTAATAT | 57.103 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
652 | 678 | 9.458727 | CTATGATACTCCCTCCGTAAACTAATA | 57.541 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
653 | 679 | 8.168725 | TCTATGATACTCCCTCCGTAAACTAAT | 58.831 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
654 | 680 | 7.520798 | TCTATGATACTCCCTCCGTAAACTAA | 58.479 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
655 | 681 | 7.083062 | TCTATGATACTCCCTCCGTAAACTA | 57.917 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
656 | 682 | 5.950023 | TCTATGATACTCCCTCCGTAAACT | 58.050 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
657 | 683 | 6.040166 | TGTTCTATGATACTCCCTCCGTAAAC | 59.960 | 42.308 | 0.00 | 0.00 | 0.00 | 2.01 |
658 | 684 | 6.131264 | TGTTCTATGATACTCCCTCCGTAAA | 58.869 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
659 | 685 | 5.698104 | TGTTCTATGATACTCCCTCCGTAA | 58.302 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
660 | 686 | 5.314718 | TGTTCTATGATACTCCCTCCGTA | 57.685 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
661 | 687 | 4.180377 | TGTTCTATGATACTCCCTCCGT | 57.820 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
662 | 688 | 4.142578 | CGATGTTCTATGATACTCCCTCCG | 60.143 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
663 | 689 | 5.010933 | TCGATGTTCTATGATACTCCCTCC | 58.989 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
664 | 690 | 6.207810 | ACTTCGATGTTCTATGATACTCCCTC | 59.792 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
665 | 691 | 6.071984 | ACTTCGATGTTCTATGATACTCCCT | 58.928 | 40.000 | 0.00 | 0.00 | 0.00 | 4.20 |
666 | 692 | 6.334102 | ACTTCGATGTTCTATGATACTCCC | 57.666 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
667 | 693 | 7.168302 | CACAACTTCGATGTTCTATGATACTCC | 59.832 | 40.741 | 13.30 | 0.00 | 0.00 | 3.85 |
668 | 694 | 7.702772 | ACACAACTTCGATGTTCTATGATACTC | 59.297 | 37.037 | 13.30 | 0.00 | 0.00 | 2.59 |
669 | 695 | 7.489435 | CACACAACTTCGATGTTCTATGATACT | 59.511 | 37.037 | 13.30 | 0.00 | 0.00 | 2.12 |
670 | 696 | 7.275779 | ACACACAACTTCGATGTTCTATGATAC | 59.724 | 37.037 | 13.30 | 0.00 | 0.00 | 2.24 |
769 | 795 | 9.400638 | CGGACTGTTAGTATCAGAATATTCTTC | 57.599 | 37.037 | 15.49 | 6.10 | 34.74 | 2.87 |
829 | 856 | 6.748333 | TCTTCTGCTAATCATTTCCTTGTG | 57.252 | 37.500 | 0.00 | 0.00 | 0.00 | 3.33 |
850 | 877 | 4.357918 | AGCTGTACTTGGATTGTGTTCT | 57.642 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
872 | 899 | 2.618241 | CCTGCTGACTTGTTGCTGTTTA | 59.382 | 45.455 | 0.00 | 0.00 | 0.00 | 2.01 |
940 | 977 | 0.039165 | GCAAGTTAGTTGGCTGCACC | 60.039 | 55.000 | 0.50 | 0.00 | 36.56 | 5.01 |
1060 | 1100 | 2.827383 | AAAGCGAGCTCGAGCCTGAC | 62.827 | 60.000 | 38.74 | 19.07 | 43.38 | 3.51 |
1069 | 1109 | 1.996191 | ACGAATCAAGAAAGCGAGCTC | 59.004 | 47.619 | 2.73 | 2.73 | 0.00 | 4.09 |
1074 | 1114 | 4.166523 | TCTGTAGACGAATCAAGAAAGCG | 58.833 | 43.478 | 0.00 | 0.00 | 0.00 | 4.68 |
1088 | 1128 | 4.985409 | CAGAACCAGTTTCACTCTGTAGAC | 59.015 | 45.833 | 0.00 | 0.00 | 36.57 | 2.59 |
1162 | 1202 | 5.894393 | AGATAGCTTACCTCAAGAGCAAGTA | 59.106 | 40.000 | 0.00 | 0.00 | 38.85 | 2.24 |
1207 | 1254 | 6.891388 | AGGTCCGGAATTATATACAACACAA | 58.109 | 36.000 | 5.23 | 0.00 | 0.00 | 3.33 |
1212 | 1259 | 7.008332 | TCTCAGAGGTCCGGAATTATATACAA | 58.992 | 38.462 | 5.23 | 0.00 | 0.00 | 2.41 |
1220 | 1270 | 1.208293 | GCTTCTCAGAGGTCCGGAATT | 59.792 | 52.381 | 5.23 | 0.00 | 0.00 | 2.17 |
1221 | 1271 | 0.827368 | GCTTCTCAGAGGTCCGGAAT | 59.173 | 55.000 | 5.23 | 0.00 | 0.00 | 3.01 |
1228 | 1278 | 6.299141 | TGATAAACAAAAGCTTCTCAGAGGT | 58.701 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1250 | 1300 | 3.292492 | AATTCAGCTCTCATGCCATGA | 57.708 | 42.857 | 7.26 | 7.26 | 37.76 | 3.07 |
1253 | 1303 | 2.372264 | GGAAATTCAGCTCTCATGCCA | 58.628 | 47.619 | 0.00 | 0.00 | 0.00 | 4.92 |
1255 | 1305 | 1.332997 | CGGGAAATTCAGCTCTCATGC | 59.667 | 52.381 | 0.00 | 0.00 | 0.00 | 4.06 |
1353 | 1403 | 5.409826 | CCTACACAAAGAAAAGCTCCTACAG | 59.590 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1407 | 1457 | 3.574354 | ATCCTCAGCCCTTTGAAGATC | 57.426 | 47.619 | 0.00 | 0.00 | 0.00 | 2.75 |
1452 | 1505 | 3.092301 | GGAACAAGAAAGGAAGATGGGG | 58.908 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
1461 | 1514 | 1.348036 | AGGACCGAGGAACAAGAAAGG | 59.652 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
1527 | 1580 | 6.651643 | GGGCCCTTGTTCGTTTTATTTTTATT | 59.348 | 34.615 | 17.04 | 0.00 | 0.00 | 1.40 |
1529 | 1582 | 5.070047 | TGGGCCCTTGTTCGTTTTATTTTTA | 59.930 | 36.000 | 25.70 | 0.00 | 0.00 | 1.52 |
1537 | 1648 | 1.396607 | GGTTGGGCCCTTGTTCGTTT | 61.397 | 55.000 | 25.70 | 0.00 | 0.00 | 3.60 |
1540 | 1651 | 3.361977 | CGGTTGGGCCCTTGTTCG | 61.362 | 66.667 | 25.70 | 15.48 | 0.00 | 3.95 |
1541 | 1652 | 2.989253 | CCGGTTGGGCCCTTGTTC | 60.989 | 66.667 | 25.70 | 8.44 | 0.00 | 3.18 |
1632 | 1743 | 9.885934 | CAGTAGTTGAGTACATGTATCTATCAC | 57.114 | 37.037 | 9.18 | 0.00 | 0.00 | 3.06 |
1638 | 1749 | 5.749109 | GGCACAGTAGTTGAGTACATGTATC | 59.251 | 44.000 | 9.18 | 8.33 | 0.00 | 2.24 |
1642 | 1753 | 4.193826 | AGGCACAGTAGTTGAGTACATG | 57.806 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
1643 | 1754 | 5.163405 | CCATAGGCACAGTAGTTGAGTACAT | 60.163 | 44.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1645 | 1756 | 4.683832 | CCATAGGCACAGTAGTTGAGTAC | 58.316 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
1662 | 1774 | 5.718724 | TCTGTGATGTCTCATAGCCATAG | 57.281 | 43.478 | 0.00 | 0.00 | 39.68 | 2.23 |
1761 | 1873 | 7.657350 | ATGCTTTACATCTGTAGGGAACCCG | 62.657 | 48.000 | 4.09 | 0.00 | 43.78 | 5.28 |
1812 | 1924 | 0.742281 | CCCAGCTTGGAGATGTGTCG | 60.742 | 60.000 | 0.00 | 0.00 | 40.96 | 4.35 |
1918 | 2034 | 7.694886 | TCAGTGACAATACTAGACGACAATAG | 58.305 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
1919 | 2035 | 7.619964 | TCAGTGACAATACTAGACGACAATA | 57.380 | 36.000 | 0.00 | 0.00 | 0.00 | 1.90 |
1920 | 2036 | 6.510879 | TCAGTGACAATACTAGACGACAAT | 57.489 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
1921 | 2037 | 5.952526 | TCAGTGACAATACTAGACGACAA | 57.047 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
1926 | 2042 | 9.416794 | CATTATCCATCAGTGACAATACTAGAC | 57.583 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
1987 | 2103 | 3.129871 | GCCTGCAGACATATCTTCTGAC | 58.870 | 50.000 | 17.39 | 6.67 | 42.81 | 3.51 |
1997 | 2113 | 0.825410 | CTCAGAGAGCCTGCAGACAT | 59.175 | 55.000 | 17.39 | 0.00 | 42.62 | 3.06 |
2138 | 2254 | 5.016173 | CACCCCTGAATGAAACTTTATCCA | 58.984 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2195 | 2311 | 3.482472 | CGTCACGACACTGACATATAAGC | 59.518 | 47.826 | 0.00 | 0.00 | 40.67 | 3.09 |
2265 | 2416 | 8.800370 | TTTTGCAATAACAGAGTCATATGGTA | 57.200 | 30.769 | 0.00 | 0.00 | 0.00 | 3.25 |
2384 | 2609 | 1.517538 | ATGGAGGCAACCAATGGGGA | 61.518 | 55.000 | 3.55 | 0.00 | 43.47 | 4.81 |
2431 | 2656 | 4.592942 | TGGCTCAAAGTCTGCAGAAATAT | 58.407 | 39.130 | 20.19 | 2.09 | 0.00 | 1.28 |
2435 | 2660 | 1.888215 | CTGGCTCAAAGTCTGCAGAA | 58.112 | 50.000 | 20.19 | 0.61 | 0.00 | 3.02 |
2480 | 2705 | 1.815003 | GCTGGTCTGTCTGGGAAATTG | 59.185 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
2687 | 2912 | 5.964958 | ACATGTATTATATGCAAGGTGGC | 57.035 | 39.130 | 0.00 | 0.00 | 0.00 | 5.01 |
2778 | 3012 | 6.978080 | TCAACTTCCAACTTACTTTTGCATTC | 59.022 | 34.615 | 0.00 | 0.00 | 0.00 | 2.67 |
2806 | 3040 | 6.146021 | CCAAAGCTTTATGGACAACAAACATC | 59.854 | 38.462 | 12.25 | 0.00 | 39.12 | 3.06 |
2813 | 3047 | 5.569413 | CGATACCAAAGCTTTATGGACAAC | 58.431 | 41.667 | 21.51 | 8.35 | 39.12 | 3.32 |
2814 | 3048 | 4.095782 | GCGATACCAAAGCTTTATGGACAA | 59.904 | 41.667 | 21.51 | 8.59 | 39.12 | 3.18 |
2836 | 3070 | 2.907910 | AACAAGATCTGTGATTGCGC | 57.092 | 45.000 | 0.00 | 0.00 | 38.67 | 6.09 |
2890 | 3124 | 4.248058 | GCATGCCTTTGATTAGCACTTTT | 58.752 | 39.130 | 6.36 | 0.00 | 39.77 | 2.27 |
2891 | 3125 | 3.368739 | GGCATGCCTTTGATTAGCACTTT | 60.369 | 43.478 | 29.98 | 0.00 | 39.77 | 2.66 |
3079 | 3313 | 4.450419 | GTCATGTTCTGTCTGAAGGAAGTG | 59.550 | 45.833 | 0.00 | 0.00 | 35.01 | 3.16 |
3092 | 3326 | 5.824624 | AGCCCATAATGTTAGTCATGTTCTG | 59.175 | 40.000 | 0.00 | 0.00 | 36.81 | 3.02 |
3094 | 3328 | 5.506317 | GCAGCCCATAATGTTAGTCATGTTC | 60.506 | 44.000 | 0.00 | 0.00 | 36.81 | 3.18 |
3095 | 3329 | 4.339247 | GCAGCCCATAATGTTAGTCATGTT | 59.661 | 41.667 | 0.00 | 0.00 | 36.81 | 2.71 |
3101 | 3336 | 2.025416 | TGTGGCAGCCCATAATGTTAGT | 60.025 | 45.455 | 9.64 | 0.00 | 44.51 | 2.24 |
3104 | 3339 | 2.163810 | ATGTGGCAGCCCATAATGTT | 57.836 | 45.000 | 9.64 | 0.00 | 44.51 | 2.71 |
3129 | 3364 | 4.328169 | GCAAAATGCTGATCAAAGTTAGCC | 59.672 | 41.667 | 0.00 | 0.00 | 40.96 | 3.93 |
3154 | 3389 | 4.631813 | CAGGCAGATTGTTACTGACCTAAC | 59.368 | 45.833 | 0.00 | 0.00 | 43.67 | 2.34 |
3214 | 3449 | 5.083122 | TCCAGAAAAATATGCTTCACCCAA | 58.917 | 37.500 | 0.00 | 0.00 | 0.00 | 4.12 |
3215 | 3450 | 4.671831 | TCCAGAAAAATATGCTTCACCCA | 58.328 | 39.130 | 0.00 | 0.00 | 0.00 | 4.51 |
3216 | 3451 | 5.859205 | ATCCAGAAAAATATGCTTCACCC | 57.141 | 39.130 | 0.00 | 0.00 | 0.00 | 4.61 |
3233 | 3468 | 7.120873 | CCATCTCCTTTTGAGCAATATATCCAG | 59.879 | 40.741 | 0.00 | 0.00 | 41.18 | 3.86 |
3244 | 3479 | 6.603599 | ACCTTATAAACCATCTCCTTTTGAGC | 59.396 | 38.462 | 0.00 | 0.00 | 41.18 | 4.26 |
3252 | 3487 | 4.141482 | TGCCTGACCTTATAAACCATCTCC | 60.141 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
3294 | 3530 | 2.088178 | CGCAATGTTTTGGCGAGGC | 61.088 | 57.895 | 0.00 | 0.00 | 35.68 | 4.70 |
3325 | 3588 | 4.250464 | TGCCTCACTTTACCTTATGTTCG | 58.750 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
3328 | 3591 | 4.288626 | TCCTTGCCTCACTTTACCTTATGT | 59.711 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
3425 | 3716 | 3.399330 | CTCTTCTTTTCGGTAAGTGCCA | 58.601 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
3460 | 3754 | 7.736447 | TCCTTCAGAAAGTCTTCTTTTGATC | 57.264 | 36.000 | 0.00 | 0.00 | 42.99 | 2.92 |
3461 | 3755 | 8.703378 | AATCCTTCAGAAAGTCTTCTTTTGAT | 57.297 | 30.769 | 0.00 | 0.00 | 42.99 | 2.57 |
3492 | 3787 | 5.188434 | TGCTTCTCCCAAATATGACTTGAG | 58.812 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3496 | 3791 | 4.166725 | TCCATGCTTCTCCCAAATATGACT | 59.833 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
3519 | 3814 | 0.892814 | GCCAGCTTCAGCCTGAAACT | 60.893 | 55.000 | 8.74 | 6.57 | 43.38 | 2.66 |
3552 | 3849 | 0.459585 | GATGCGAGCTCCAACGGTAA | 60.460 | 55.000 | 8.47 | 0.00 | 0.00 | 2.85 |
3553 | 3850 | 1.141019 | GATGCGAGCTCCAACGGTA | 59.859 | 57.895 | 8.47 | 0.00 | 0.00 | 4.02 |
3586 | 3886 | 4.106197 | CAGAGCACGGTCATAAAGACTAC | 58.894 | 47.826 | 0.00 | 0.00 | 46.72 | 2.73 |
3674 | 3974 | 7.728981 | TGGATTTTAGTACTACTAGGCTAGCAT | 59.271 | 37.037 | 21.26 | 12.98 | 31.47 | 3.79 |
3688 | 3988 | 7.031975 | ACTAGTACAGCGTTGGATTTTAGTAC | 58.968 | 38.462 | 3.74 | 0.00 | 0.00 | 2.73 |
3690 | 3990 | 6.034161 | ACTAGTACAGCGTTGGATTTTAGT | 57.966 | 37.500 | 3.74 | 2.70 | 0.00 | 2.24 |
3691 | 3991 | 6.963049 | AACTAGTACAGCGTTGGATTTTAG | 57.037 | 37.500 | 3.74 | 2.09 | 0.00 | 1.85 |
3692 | 3992 | 7.733402 | AAAACTAGTACAGCGTTGGATTTTA | 57.267 | 32.000 | 3.74 | 0.00 | 0.00 | 1.52 |
3693 | 3993 | 6.628919 | AAAACTAGTACAGCGTTGGATTTT | 57.371 | 33.333 | 3.74 | 0.00 | 0.00 | 1.82 |
3694 | 3994 | 6.628919 | AAAAACTAGTACAGCGTTGGATTT | 57.371 | 33.333 | 3.74 | 0.00 | 0.00 | 2.17 |
3717 | 4305 | 6.198687 | CAGTACAGCGTTTCTCAAAATGAAA | 58.801 | 36.000 | 0.00 | 0.00 | 33.93 | 2.69 |
3720 | 4308 | 4.024048 | ACCAGTACAGCGTTTCTCAAAATG | 60.024 | 41.667 | 0.00 | 0.00 | 34.98 | 2.32 |
3721 | 4309 | 4.134563 | ACCAGTACAGCGTTTCTCAAAAT | 58.865 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
3722 | 4310 | 3.537580 | ACCAGTACAGCGTTTCTCAAAA | 58.462 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
3757 | 4345 | 3.436704 | ACAACTATGGACGAACAATGCAG | 59.563 | 43.478 | 0.00 | 0.00 | 0.00 | 4.41 |
3797 | 4385 | 4.466828 | CACGGAGCAGTGTCTAATTTTTG | 58.533 | 43.478 | 0.00 | 0.00 | 37.35 | 2.44 |
3830 | 4418 | 4.084276 | GGCGAACAGAGAAAAAGAGAGTTC | 60.084 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
3835 | 4426 | 2.410053 | CGAGGCGAACAGAGAAAAAGAG | 59.590 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3838 | 4429 | 1.508632 | CCGAGGCGAACAGAGAAAAA | 58.491 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3852 | 4443 | 2.264794 | CGGTGAAACTCCCCGAGG | 59.735 | 66.667 | 0.00 | 0.00 | 44.41 | 4.63 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.