Multiple sequence alignment - TraesCS6A01G137000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G137000 chr6A 100.000 3874 0 0 1 3874 108174753 108178626 0.000000e+00 7155
1 TraesCS6A01G137000 chr6A 90.826 109 7 3 579 684 47680669 47680561 4.030000e-30 143
2 TraesCS6A01G137000 chr6D 92.209 1476 57 27 2256 3695 89730971 89732424 0.000000e+00 2036
3 TraesCS6A01G137000 chr6D 92.496 693 45 7 1517 2207 89730125 89730812 0.000000e+00 985
4 TraesCS6A01G137000 chr6D 94.505 546 19 4 672 1207 89729282 89729826 0.000000e+00 832
5 TraesCS6A01G137000 chr6D 87.066 518 31 8 96 587 89728774 89729281 1.570000e-153 553
6 TraesCS6A01G137000 chr6D 96.053 228 6 1 1262 1486 89729827 89730054 6.110000e-98 368
7 TraesCS6A01G137000 chr6D 90.576 191 10 6 3685 3872 89732704 89732889 2.990000e-61 246
8 TraesCS6A01G137000 chr6B 90.856 1553 91 25 672 2205 172261105 172262625 0.000000e+00 2034
9 TraesCS6A01G137000 chr6B 90.191 1468 63 30 2203 3629 172262658 172264085 0.000000e+00 1838
10 TraesCS6A01G137000 chr6B 86.328 512 41 8 96 587 172260602 172261104 7.370000e-147 531
11 TraesCS6A01G137000 chr6B 94.845 97 5 0 589 685 477833991 477834087 6.700000e-33 152
12 TraesCS6A01G137000 chr1D 89.744 234 16 4 3023 3252 403278837 403278608 3.790000e-75 292
13 TraesCS6A01G137000 chr2D 89.316 234 17 4 3023 3252 579178343 579178572 1.760000e-73 287
14 TraesCS6A01G137000 chr7D 88.462 234 19 5 3023 3252 559288900 559288671 3.810000e-70 276
15 TraesCS6A01G137000 chr7D 93.137 102 4 3 589 688 503323092 503323192 3.120000e-31 147
16 TraesCS6A01G137000 chr4B 86.975 238 19 6 3023 3252 184600699 184600932 1.380000e-64 257
17 TraesCS6A01G137000 chr4B 90.991 111 6 4 587 695 630098743 630098851 3.120000e-31 147
18 TraesCS6A01G137000 chr4B 94.624 93 4 1 589 681 600126334 600126425 4.030000e-30 143
19 TraesCS6A01G137000 chr5A 85.652 230 17 6 3023 3252 615774106 615773893 1.080000e-55 228
20 TraesCS6A01G137000 chr5A 85.652 230 17 6 3023 3252 615833218 615833005 1.080000e-55 228
21 TraesCS6A01G137000 chr5A 94.845 97 4 1 589 684 25892276 25892372 2.410000e-32 150
22 TraesCS6A01G137000 chr5A 90.909 110 6 3 1522 1630 688967916 688967810 1.120000e-30 145
23 TraesCS6A01G137000 chr5A 93.000 100 4 3 1527 1625 688965928 688965831 4.030000e-30 143
24 TraesCS6A01G137000 chr3A 95.000 100 3 2 585 683 727583900 727583998 5.180000e-34 156
25 TraesCS6A01G137000 chr5B 95.652 92 4 0 1527 1618 689884272 689884363 8.670000e-32 148
26 TraesCS6A01G137000 chr5B 93.939 99 5 1 1527 1625 689892620 689892717 8.670000e-32 148
27 TraesCS6A01G137000 chr4A 92.453 106 5 3 1520 1623 622239364 622239260 8.670000e-32 148
28 TraesCS6A01G137000 chr5D 93.137 102 4 3 1526 1626 490026123 490026024 3.120000e-31 147
29 TraesCS6A01G137000 chr5D 91.429 105 8 1 577 681 210057989 210057886 4.030000e-30 143
30 TraesCS6A01G137000 chr5D 90.351 114 3 6 1520 1632 546686472 546686578 4.030000e-30 143
31 TraesCS6A01G137000 chr3B 90.179 112 6 4 564 673 99763150 99763258 1.450000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G137000 chr6A 108174753 108178626 3873 False 7155.000000 7155 100.000000 1 3874 1 chr6A.!!$F1 3873
1 TraesCS6A01G137000 chr6D 89728774 89732889 4115 False 836.666667 2036 92.150833 96 3872 6 chr6D.!!$F1 3776
2 TraesCS6A01G137000 chr6B 172260602 172264085 3483 False 1467.666667 2034 89.125000 96 3629 3 chr6B.!!$F2 3533


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.171903 ATTTCATGGCAGAAGCACGC 59.828 50.0 0.0 0.0 44.61 5.34 F
240 265 0.184933 AAAACTAGCTGTGGGTGGCA 59.815 50.0 0.0 0.0 0.00 4.92 F
243 268 0.322816 ACTAGCTGTGGGTGGCAATG 60.323 55.0 0.0 0.0 0.00 2.82 F
1489 1542 0.473117 TTCCTCGGTCCTCCCAACTT 60.473 55.0 0.0 0.0 0.00 2.66 F
1621 1732 0.537188 ACTGAGCTATGGACCCGTTG 59.463 55.0 0.0 0.0 0.00 4.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1924 0.742281 CCCAGCTTGGAGATGTGTCG 60.742 60.000 0.00 0.0 40.96 4.35 R
1997 2113 0.825410 CTCAGAGAGCCTGCAGACAT 59.175 55.000 17.39 0.0 42.62 3.06 R
2195 2311 3.482472 CGTCACGACACTGACATATAAGC 59.518 47.826 0.00 0.0 40.67 3.09 R
2384 2609 1.517538 ATGGAGGCAACCAATGGGGA 61.518 55.000 3.55 0.0 43.47 4.81 R
3552 3849 0.459585 GATGCGAGCTCCAACGGTAA 60.460 55.000 8.47 0.0 0.00 2.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.579491 GATGCTGCATGGTTAGAAAATTTC 57.421 37.500 21.53 0.00 0.00 2.17
24 25 5.465532 TGCTGCATGGTTAGAAAATTTCA 57.534 34.783 8.55 0.00 0.00 2.69
25 26 6.040209 TGCTGCATGGTTAGAAAATTTCAT 57.960 33.333 8.55 0.00 0.00 2.57
26 27 5.870433 TGCTGCATGGTTAGAAAATTTCATG 59.130 36.000 8.55 9.71 36.17 3.07
27 28 5.292589 GCTGCATGGTTAGAAAATTTCATGG 59.707 40.000 8.55 3.70 34.36 3.66
28 29 5.177326 TGCATGGTTAGAAAATTTCATGGC 58.823 37.500 8.55 8.79 34.36 4.40
29 30 5.177326 GCATGGTTAGAAAATTTCATGGCA 58.823 37.500 8.55 0.00 34.36 4.92
30 31 5.292589 GCATGGTTAGAAAATTTCATGGCAG 59.707 40.000 8.55 0.00 34.36 4.85
31 32 6.632909 CATGGTTAGAAAATTTCATGGCAGA 58.367 36.000 8.55 0.00 0.00 4.26
32 33 6.662865 TGGTTAGAAAATTTCATGGCAGAA 57.337 33.333 8.55 0.00 0.00 3.02
33 34 6.690530 TGGTTAGAAAATTTCATGGCAGAAG 58.309 36.000 8.55 0.00 0.00 2.85
34 35 5.578336 GGTTAGAAAATTTCATGGCAGAAGC 59.422 40.000 8.55 0.00 41.10 3.86
35 36 4.877378 AGAAAATTTCATGGCAGAAGCA 57.123 36.364 8.55 0.00 44.61 3.91
36 37 4.563061 AGAAAATTTCATGGCAGAAGCAC 58.437 39.130 8.55 0.00 44.61 4.40
37 38 2.642139 AATTTCATGGCAGAAGCACG 57.358 45.000 0.00 0.00 44.61 5.34
38 39 0.171903 ATTTCATGGCAGAAGCACGC 59.828 50.000 0.00 0.00 44.61 5.34
39 40 1.171549 TTTCATGGCAGAAGCACGCA 61.172 50.000 0.00 0.00 44.61 5.24
40 41 1.171549 TTCATGGCAGAAGCACGCAA 61.172 50.000 0.00 0.00 44.61 4.85
41 42 1.154093 CATGGCAGAAGCACGCAAG 60.154 57.895 0.00 0.00 44.61 4.01
42 43 2.986306 ATGGCAGAAGCACGCAAGC 61.986 57.895 0.00 0.00 44.61 4.01
43 44 3.663176 GGCAGAAGCACGCAAGCA 61.663 61.111 0.00 0.00 44.61 3.91
44 45 2.332514 GCAGAAGCACGCAAGCAA 59.667 55.556 0.00 0.00 45.62 3.91
45 46 1.299316 GCAGAAGCACGCAAGCAAA 60.299 52.632 0.00 0.00 45.62 3.68
46 47 1.273455 GCAGAAGCACGCAAGCAAAG 61.273 55.000 0.00 0.00 45.62 2.77
47 48 0.308684 CAGAAGCACGCAAGCAAAGA 59.691 50.000 0.00 0.00 45.62 2.52
48 49 1.024271 AGAAGCACGCAAGCAAAGAA 58.976 45.000 0.00 0.00 45.62 2.52
49 50 1.002033 AGAAGCACGCAAGCAAAGAAG 60.002 47.619 0.00 0.00 45.62 2.85
50 51 1.002468 GAAGCACGCAAGCAAAGAAGA 60.002 47.619 0.00 0.00 45.62 2.87
51 52 1.242076 AGCACGCAAGCAAAGAAGAT 58.758 45.000 0.00 0.00 45.62 2.40
52 53 2.426522 AGCACGCAAGCAAAGAAGATA 58.573 42.857 0.00 0.00 45.62 1.98
53 54 2.813754 AGCACGCAAGCAAAGAAGATAA 59.186 40.909 0.00 0.00 45.62 1.75
54 55 3.441572 AGCACGCAAGCAAAGAAGATAAT 59.558 39.130 0.00 0.00 45.62 1.28
55 56 3.545078 GCACGCAAGCAAAGAAGATAATG 59.455 43.478 0.00 0.00 45.62 1.90
56 57 3.545078 CACGCAAGCAAAGAAGATAATGC 59.455 43.478 0.00 0.00 45.62 3.56
57 58 3.191162 ACGCAAGCAAAGAAGATAATGCA 59.809 39.130 0.00 0.00 41.18 3.96
58 59 4.168014 CGCAAGCAAAGAAGATAATGCAA 58.832 39.130 0.00 0.00 41.18 4.08
59 60 4.264614 CGCAAGCAAAGAAGATAATGCAAG 59.735 41.667 0.00 0.00 41.18 4.01
60 61 5.166398 GCAAGCAAAGAAGATAATGCAAGT 58.834 37.500 0.00 0.00 41.18 3.16
61 62 5.636543 GCAAGCAAAGAAGATAATGCAAGTT 59.363 36.000 0.00 0.00 41.18 2.66
62 63 6.146673 GCAAGCAAAGAAGATAATGCAAGTTT 59.853 34.615 0.00 0.00 41.18 2.66
63 64 7.307573 GCAAGCAAAGAAGATAATGCAAGTTTT 60.308 33.333 0.00 0.00 41.18 2.43
64 65 9.195411 CAAGCAAAGAAGATAATGCAAGTTTTA 57.805 29.630 0.00 0.00 41.18 1.52
65 66 9.933723 AAGCAAAGAAGATAATGCAAGTTTTAT 57.066 25.926 0.00 0.00 41.18 1.40
66 67 9.362539 AGCAAAGAAGATAATGCAAGTTTTATG 57.637 29.630 0.00 0.00 41.18 1.90
67 68 8.598075 GCAAAGAAGATAATGCAAGTTTTATGG 58.402 33.333 0.00 0.00 38.63 2.74
68 69 8.598075 CAAAGAAGATAATGCAAGTTTTATGGC 58.402 33.333 0.00 0.00 0.00 4.40
69 70 7.408756 AGAAGATAATGCAAGTTTTATGGCA 57.591 32.000 0.00 0.00 41.00 4.92
70 71 7.839907 AGAAGATAATGCAAGTTTTATGGCAA 58.160 30.769 0.00 0.00 40.02 4.52
71 72 8.313292 AGAAGATAATGCAAGTTTTATGGCAAA 58.687 29.630 0.00 0.00 40.02 3.68
72 73 7.832503 AGATAATGCAAGTTTTATGGCAAAC 57.167 32.000 0.00 0.00 40.02 2.93
73 74 7.385267 AGATAATGCAAGTTTTATGGCAAACA 58.615 30.769 0.00 0.00 40.02 2.83
74 75 7.877097 AGATAATGCAAGTTTTATGGCAAACAA 59.123 29.630 0.00 0.00 40.02 2.83
75 76 6.690194 AATGCAAGTTTTATGGCAAACAAA 57.310 29.167 0.00 0.00 40.02 2.83
76 77 6.880942 ATGCAAGTTTTATGGCAAACAAAT 57.119 29.167 0.00 0.00 40.02 2.32
77 78 7.976135 ATGCAAGTTTTATGGCAAACAAATA 57.024 28.000 0.00 0.00 40.02 1.40
78 79 7.792374 TGCAAGTTTTATGGCAAACAAATAA 57.208 28.000 0.00 0.00 38.86 1.40
79 80 7.859598 TGCAAGTTTTATGGCAAACAAATAAG 58.140 30.769 0.00 0.00 38.86 1.73
80 81 6.796552 GCAAGTTTTATGGCAAACAAATAAGC 59.203 34.615 0.00 0.00 38.86 3.09
81 82 7.307930 GCAAGTTTTATGGCAAACAAATAAGCT 60.308 33.333 0.00 0.00 38.86 3.74
82 83 9.202273 CAAGTTTTATGGCAAACAAATAAGCTA 57.798 29.630 0.00 0.00 38.86 3.32
83 84 9.942850 AAGTTTTATGGCAAACAAATAAGCTAT 57.057 25.926 0.00 0.00 38.86 2.97
84 85 9.586435 AGTTTTATGGCAAACAAATAAGCTATC 57.414 29.630 0.00 0.00 38.86 2.08
85 86 9.364989 GTTTTATGGCAAACAAATAAGCTATCA 57.635 29.630 0.00 0.00 36.75 2.15
86 87 9.935241 TTTTATGGCAAACAAATAAGCTATCAA 57.065 25.926 0.00 0.00 30.65 2.57
87 88 9.585099 TTTATGGCAAACAAATAAGCTATCAAG 57.415 29.630 0.00 0.00 30.65 3.02
88 89 6.832520 TGGCAAACAAATAAGCTATCAAGA 57.167 33.333 0.00 0.00 0.00 3.02
89 90 7.225784 TGGCAAACAAATAAGCTATCAAGAA 57.774 32.000 0.00 0.00 0.00 2.52
90 91 7.090173 TGGCAAACAAATAAGCTATCAAGAAC 58.910 34.615 0.00 0.00 0.00 3.01
91 92 7.090173 GGCAAACAAATAAGCTATCAAGAACA 58.910 34.615 0.00 0.00 0.00 3.18
92 93 7.598493 GGCAAACAAATAAGCTATCAAGAACAA 59.402 33.333 0.00 0.00 0.00 2.83
93 94 8.977505 GCAAACAAATAAGCTATCAAGAACAAA 58.022 29.630 0.00 0.00 0.00 2.83
123 124 3.976704 TGGGACACATCACCATTCC 57.023 52.632 0.00 0.00 0.00 3.01
125 126 0.395724 GGGACACATCACCATTCCCC 60.396 60.000 0.00 0.00 40.24 4.81
133 134 4.223477 CACATCACCATTCCCCAAAGAAAT 59.777 41.667 0.00 0.00 0.00 2.17
142 143 4.569719 TCCCCAAAGAAATAGGTCAGAC 57.430 45.455 0.00 0.00 0.00 3.51
145 146 3.684788 CCCAAAGAAATAGGTCAGACGTG 59.315 47.826 6.00 0.00 0.00 4.49
149 150 2.000447 GAAATAGGTCAGACGTGTGCC 59.000 52.381 8.02 12.41 0.00 5.01
226 251 9.855021 GCAATATGAAATACCAAGTACAAAACT 57.145 29.630 0.00 0.00 41.49 2.66
238 263 1.981256 ACAAAACTAGCTGTGGGTGG 58.019 50.000 0.00 0.00 0.00 4.61
239 264 0.598065 CAAAACTAGCTGTGGGTGGC 59.402 55.000 0.00 0.00 0.00 5.01
240 265 0.184933 AAAACTAGCTGTGGGTGGCA 59.815 50.000 0.00 0.00 0.00 4.92
241 266 0.184933 AAACTAGCTGTGGGTGGCAA 59.815 50.000 0.00 0.00 0.00 4.52
242 267 0.405585 AACTAGCTGTGGGTGGCAAT 59.594 50.000 0.00 0.00 0.00 3.56
243 268 0.322816 ACTAGCTGTGGGTGGCAATG 60.323 55.000 0.00 0.00 0.00 2.82
244 269 1.001020 TAGCTGTGGGTGGCAATGG 60.001 57.895 0.00 0.00 0.00 3.16
284 309 4.703897 AGTTGCTGTTGTGCTCTTAACTA 58.296 39.130 0.00 0.00 0.00 2.24
288 313 5.063204 TGCTGTTGTGCTCTTAACTACATT 58.937 37.500 0.00 0.00 33.81 2.71
289 314 5.530915 TGCTGTTGTGCTCTTAACTACATTT 59.469 36.000 0.00 0.00 33.81 2.32
342 367 6.426587 ACATAATGTCCTTTCAAGGCACTAT 58.573 36.000 0.10 0.55 46.06 2.12
454 479 3.069586 TGGAGAGGTCAAGTTGTGTGTAG 59.930 47.826 2.11 0.00 0.00 2.74
469 495 2.158740 TGTGTAGTAAAACAGCCAGCCA 60.159 45.455 0.00 0.00 0.00 4.75
483 509 2.027837 GCCAGCCATTTTCCAGAACAAT 60.028 45.455 0.00 0.00 0.00 2.71
501 527 4.553323 ACAATCTCTGCAAAACATTCAGC 58.447 39.130 0.00 0.00 0.00 4.26
502 528 3.863142 ATCTCTGCAAAACATTCAGCC 57.137 42.857 0.00 0.00 0.00 4.85
513 539 6.803807 GCAAAACATTCAGCCTACTAAGAAAG 59.196 38.462 0.00 0.00 0.00 2.62
522 548 6.154534 TCAGCCTACTAAGAAAGTAATGCAGA 59.845 38.462 0.00 4.36 40.21 4.26
582 608 7.321153 TGATACTAACAGTTTGAGCTTCCTAC 58.679 38.462 1.40 0.00 0.00 3.18
587 613 5.757850 ACAGTTTGAGCTTCCTACTTTTG 57.242 39.130 0.00 0.00 0.00 2.44
588 614 5.193679 ACAGTTTGAGCTTCCTACTTTTGT 58.806 37.500 0.00 0.00 0.00 2.83
589 615 6.354130 ACAGTTTGAGCTTCCTACTTTTGTA 58.646 36.000 0.00 0.00 0.00 2.41
590 616 6.260271 ACAGTTTGAGCTTCCTACTTTTGTAC 59.740 38.462 0.00 0.00 0.00 2.90
591 617 6.483640 CAGTTTGAGCTTCCTACTTTTGTACT 59.516 38.462 0.00 0.00 0.00 2.73
592 618 7.012421 CAGTTTGAGCTTCCTACTTTTGTACTT 59.988 37.037 0.00 0.00 0.00 2.24
593 619 7.226918 AGTTTGAGCTTCCTACTTTTGTACTTC 59.773 37.037 0.00 0.00 0.00 3.01
594 620 5.548406 TGAGCTTCCTACTTTTGTACTTCC 58.452 41.667 0.00 0.00 0.00 3.46
595 621 5.307196 TGAGCTTCCTACTTTTGTACTTCCT 59.693 40.000 0.00 0.00 0.00 3.36
596 622 5.795972 AGCTTCCTACTTTTGTACTTCCTC 58.204 41.667 0.00 0.00 0.00 3.71
597 623 5.544562 AGCTTCCTACTTTTGTACTTCCTCT 59.455 40.000 0.00 0.00 0.00 3.69
598 624 5.639931 GCTTCCTACTTTTGTACTTCCTCTG 59.360 44.000 0.00 0.00 0.00 3.35
599 625 6.741801 GCTTCCTACTTTTGTACTTCCTCTGT 60.742 42.308 0.00 0.00 0.00 3.41
600 626 7.525029 GCTTCCTACTTTTGTACTTCCTCTGTA 60.525 40.741 0.00 0.00 0.00 2.74
601 627 7.844493 TCCTACTTTTGTACTTCCTCTGTAA 57.156 36.000 0.00 0.00 0.00 2.41
602 628 8.253867 TCCTACTTTTGTACTTCCTCTGTAAA 57.746 34.615 0.00 0.00 0.00 2.01
603 629 8.146412 TCCTACTTTTGTACTTCCTCTGTAAAC 58.854 37.037 0.00 0.00 0.00 2.01
604 630 8.148999 CCTACTTTTGTACTTCCTCTGTAAACT 58.851 37.037 0.00 0.00 0.00 2.66
616 642 9.400638 CTTCCTCTGTAAACTAATATAAGAGCG 57.599 37.037 0.00 0.00 0.00 5.03
617 643 8.461249 TCCTCTGTAAACTAATATAAGAGCGT 57.539 34.615 0.00 0.00 0.00 5.07
618 644 8.910944 TCCTCTGTAAACTAATATAAGAGCGTT 58.089 33.333 0.00 0.00 0.00 4.84
619 645 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
649 675 6.885922 ACTAAAATAGTGATCTAAACGCCCT 58.114 36.000 0.00 0.00 37.69 5.19
650 676 7.336396 ACTAAAATAGTGATCTAAACGCCCTT 58.664 34.615 0.00 0.00 37.69 3.95
651 677 8.480501 ACTAAAATAGTGATCTAAACGCCCTTA 58.519 33.333 0.00 0.00 37.69 2.69
652 678 9.490379 CTAAAATAGTGATCTAAACGCCCTTAT 57.510 33.333 0.00 0.00 0.00 1.73
658 684 8.191534 AGTGATCTAAACGCCCTTATATTAGT 57.808 34.615 0.00 0.00 0.00 2.24
659 685 8.648693 AGTGATCTAAACGCCCTTATATTAGTT 58.351 33.333 0.00 0.00 0.00 2.24
660 686 9.269453 GTGATCTAAACGCCCTTATATTAGTTT 57.731 33.333 0.00 0.00 36.11 2.66
663 689 8.801715 TCTAAACGCCCTTATATTAGTTTACG 57.198 34.615 0.00 0.00 34.29 3.18
664 690 6.849588 AAACGCCCTTATATTAGTTTACGG 57.150 37.500 0.00 0.00 31.14 4.02
665 691 5.789643 ACGCCCTTATATTAGTTTACGGA 57.210 39.130 0.00 0.00 0.00 4.69
666 692 5.776744 ACGCCCTTATATTAGTTTACGGAG 58.223 41.667 0.00 0.00 0.00 4.63
667 693 5.166398 CGCCCTTATATTAGTTTACGGAGG 58.834 45.833 0.00 0.00 0.00 4.30
668 694 5.485620 GCCCTTATATTAGTTTACGGAGGG 58.514 45.833 0.00 0.00 43.30 4.30
669 695 5.246883 GCCCTTATATTAGTTTACGGAGGGA 59.753 44.000 8.71 0.00 43.15 4.20
670 696 6.573876 GCCCTTATATTAGTTTACGGAGGGAG 60.574 46.154 8.71 0.00 43.15 4.30
769 795 9.023967 CAGGAAACTAAAATTCAACTTCTTGTG 57.976 33.333 0.00 0.00 40.21 3.33
803 829 5.014858 TGATACTAACAGTCCGAGTTTCCT 58.985 41.667 0.00 0.00 0.00 3.36
850 877 5.012239 AGCACAAGGAAATGATTAGCAGAA 58.988 37.500 0.00 0.00 0.00 3.02
872 899 4.718961 AGAACACAATCCAAGTACAGCTT 58.281 39.130 0.00 0.00 38.08 3.74
1060 1100 3.599343 TCCTTGTTCTTCATCACCATCG 58.401 45.455 0.00 0.00 0.00 3.84
1069 1109 0.873312 CATCACCATCGTCAGGCTCG 60.873 60.000 0.00 0.00 0.00 5.03
1074 1114 1.299014 CATCGTCAGGCTCGAGCTC 60.299 63.158 34.46 24.39 40.57 4.09
1088 1128 1.006598 CGAGCTCGCTTTCTTGATTCG 60.007 52.381 25.07 0.00 0.00 3.34
1162 1202 2.956333 AGTTTTCGGGCAGCTTAAAAGT 59.044 40.909 0.00 0.00 0.00 2.66
1198 1245 5.301805 AGGTAAGCTATCTTCTGCTCTTCTC 59.698 44.000 0.00 0.00 38.75 2.87
1207 1254 3.060736 TCTGCTCTTCTCTACACGTCT 57.939 47.619 0.00 0.00 0.00 4.18
1228 1278 6.698329 CGTCTTGTGTTGTATATAATTCCGGA 59.302 38.462 0.00 0.00 0.00 5.14
1250 1300 5.707764 GGACCTCTGAGAAGCTTTTGTTTAT 59.292 40.000 6.17 0.00 0.00 1.40
1253 1303 6.944862 ACCTCTGAGAAGCTTTTGTTTATCAT 59.055 34.615 6.17 0.00 39.44 2.45
1255 1305 7.149569 TCTGAGAAGCTTTTGTTTATCATGG 57.850 36.000 0.00 0.00 39.44 3.66
1407 1457 2.122783 TGGCGGTAAAGATGAAAGGG 57.877 50.000 0.00 0.00 0.00 3.95
1452 1505 5.539582 TCTCGCACATGTTTGGTAATAAC 57.460 39.130 0.00 0.00 0.00 1.89
1461 1514 6.379988 ACATGTTTGGTAATAACCCCATCTTC 59.620 38.462 0.00 0.00 46.16 2.87
1486 1539 0.765135 TTGTTCCTCGGTCCTCCCAA 60.765 55.000 0.00 0.00 0.00 4.12
1487 1540 1.295746 GTTCCTCGGTCCTCCCAAC 59.704 63.158 0.00 0.00 0.00 3.77
1489 1542 0.473117 TTCCTCGGTCCTCCCAACTT 60.473 55.000 0.00 0.00 0.00 2.66
1490 1543 0.903454 TCCTCGGTCCTCCCAACTTC 60.903 60.000 0.00 0.00 0.00 3.01
1492 1545 0.685097 CTCGGTCCTCCCAACTTCAA 59.315 55.000 0.00 0.00 0.00 2.69
1494 1547 1.702957 TCGGTCCTCCCAACTTCAAAT 59.297 47.619 0.00 0.00 0.00 2.32
1495 1548 2.907696 TCGGTCCTCCCAACTTCAAATA 59.092 45.455 0.00 0.00 0.00 1.40
1496 1549 3.007635 CGGTCCTCCCAACTTCAAATAC 58.992 50.000 0.00 0.00 0.00 1.89
1498 1551 4.010349 GGTCCTCCCAACTTCAAATACAG 58.990 47.826 0.00 0.00 0.00 2.74
1499 1552 4.506802 GGTCCTCCCAACTTCAAATACAGT 60.507 45.833 0.00 0.00 0.00 3.55
1500 1553 5.070685 GTCCTCCCAACTTCAAATACAGTT 58.929 41.667 0.00 0.00 33.29 3.16
1501 1554 6.235664 GTCCTCCCAACTTCAAATACAGTTA 58.764 40.000 0.00 0.00 31.78 2.24
1502 1555 6.884836 GTCCTCCCAACTTCAAATACAGTTAT 59.115 38.462 0.00 0.00 31.78 1.89
1503 1556 6.884295 TCCTCCCAACTTCAAATACAGTTATG 59.116 38.462 0.00 0.00 31.78 1.90
1504 1557 6.659242 CCTCCCAACTTCAAATACAGTTATGT 59.341 38.462 0.00 0.00 43.76 2.29
1505 1558 7.176690 CCTCCCAACTTCAAATACAGTTATGTT 59.823 37.037 0.00 0.00 41.01 2.71
1506 1559 7.881142 TCCCAACTTCAAATACAGTTATGTTG 58.119 34.615 0.00 0.00 41.01 3.33
1507 1560 7.040062 TCCCAACTTCAAATACAGTTATGTTGG 60.040 37.037 12.44 12.44 46.49 3.77
1508 1561 7.255801 CCCAACTTCAAATACAGTTATGTTGGT 60.256 37.037 16.45 0.00 45.89 3.67
1509 1562 8.141268 CCAACTTCAAATACAGTTATGTTGGTT 58.859 33.333 11.50 0.00 43.76 3.67
1510 1563 9.528018 CAACTTCAAATACAGTTATGTTGGTTT 57.472 29.630 0.00 0.00 41.01 3.27
1618 1729 1.330655 ACCACTGAGCTATGGACCCG 61.331 60.000 16.14 0.00 39.46 5.28
1621 1732 0.537188 ACTGAGCTATGGACCCGTTG 59.463 55.000 0.00 0.00 0.00 4.10
1630 1741 4.578928 GCTATGGACCCGTTGTATGAATTT 59.421 41.667 0.00 0.00 0.00 1.82
1632 1743 4.775058 TGGACCCGTTGTATGAATTTTG 57.225 40.909 0.00 0.00 0.00 2.44
1638 1749 7.083875 ACCCGTTGTATGAATTTTGTGATAG 57.916 36.000 0.00 0.00 0.00 2.08
1642 1753 9.864034 CCGTTGTATGAATTTTGTGATAGATAC 57.136 33.333 0.00 0.00 0.00 2.24
1662 1774 3.926616 ACATGTACTCAACTACTGTGCC 58.073 45.455 0.00 0.00 0.00 5.01
1729 1841 7.246674 ACTTACACATGTAACTGTTGTTCTG 57.753 36.000 0.00 0.00 35.75 3.02
1761 1873 5.359009 TCAAAAGGAGCATGAGATGGAAATC 59.641 40.000 0.00 0.00 0.00 2.17
1854 1966 7.151976 GGGTAAACATGCAAATAACTTGAAGT 58.848 34.615 0.00 0.00 37.17 3.01
1947 2063 5.066117 GTCGTCTAGTATTGTCACTGATGGA 59.934 44.000 0.00 0.00 0.00 3.41
1960 2076 5.297527 GTCACTGATGGATAATGTGCATTGA 59.702 40.000 7.60 0.00 39.19 2.57
1987 2103 8.659491 TCATTTTAGATGAATGAGTTCAAGTCG 58.341 33.333 0.00 0.00 46.67 4.18
1997 2113 5.959618 TGAGTTCAAGTCGTCAGAAGATA 57.040 39.130 0.00 0.00 0.00 1.98
1999 2115 6.325596 TGAGTTCAAGTCGTCAGAAGATATG 58.674 40.000 0.00 0.00 0.00 1.78
2195 2311 3.495377 TCCACCGTAAAAGTTTCACATCG 59.505 43.478 0.00 0.00 0.00 3.84
2199 2315 4.751098 ACCGTAAAAGTTTCACATCGCTTA 59.249 37.500 0.00 0.00 0.00 3.09
2212 2363 4.147133 CACATCGCTTATATGTCAGTGTCG 59.853 45.833 0.00 0.00 35.39 4.35
2480 2705 1.022735 CCATGCTGCCAACTGAGATC 58.977 55.000 0.00 0.00 0.00 2.75
2501 2726 0.036010 ATTTCCCAGACAGACCAGCG 60.036 55.000 0.00 0.00 0.00 5.18
2660 2885 1.807573 CGAGTCGCAAAGAGGGCTC 60.808 63.158 0.00 0.00 33.33 4.70
2778 3012 3.506067 GTCCAGTTTAACAGATGGTTGGG 59.494 47.826 0.00 0.00 40.73 4.12
2806 3040 5.625311 GCAAAAGTAAGTTGGAAGTTGATCG 59.375 40.000 0.00 0.00 0.00 3.69
2813 3047 5.362556 AGTTGGAAGTTGATCGATGTTTG 57.637 39.130 0.54 0.00 0.00 2.93
2814 3048 4.821805 AGTTGGAAGTTGATCGATGTTTGT 59.178 37.500 0.54 0.00 0.00 2.83
2836 3070 5.123186 TGTTGTCCATAAAGCTTTGGTATCG 59.877 40.000 22.02 0.41 34.48 2.92
2838 3072 2.869801 TCCATAAAGCTTTGGTATCGCG 59.130 45.455 22.02 0.00 34.48 5.87
2880 3114 6.153067 TCACATTGTTTTTCAAAGACACGTT 58.847 32.000 0.00 0.00 39.62 3.99
2890 3124 9.674824 TTTTTCAAAGACACGTTACTGTAAAAA 57.325 25.926 1.10 1.07 0.00 1.94
3079 3313 2.294233 TCACTTTGTTCAAGAGCCATGC 59.706 45.455 0.00 0.00 36.21 4.06
3092 3326 0.807496 GCCATGCACTTCCTTCAGAC 59.193 55.000 0.00 0.00 0.00 3.51
3094 3328 2.082231 CCATGCACTTCCTTCAGACAG 58.918 52.381 0.00 0.00 0.00 3.51
3095 3329 2.289882 CCATGCACTTCCTTCAGACAGA 60.290 50.000 0.00 0.00 0.00 3.41
3101 3336 4.635223 CACTTCCTTCAGACAGAACATGA 58.365 43.478 0.00 0.00 31.61 3.07
3104 3339 5.540337 ACTTCCTTCAGACAGAACATGACTA 59.460 40.000 0.00 0.00 32.40 2.59
3129 3364 3.443045 GGGCTGCCACATTGGTCG 61.443 66.667 22.05 0.00 40.46 4.79
3214 3449 1.544314 GCAGCCTGTCTTCCTTGAACT 60.544 52.381 0.00 0.00 0.00 3.01
3215 3450 2.856222 CAGCCTGTCTTCCTTGAACTT 58.144 47.619 0.00 0.00 0.00 2.66
3216 3451 2.551459 CAGCCTGTCTTCCTTGAACTTG 59.449 50.000 0.00 0.00 0.00 3.16
3217 3452 1.882623 GCCTGTCTTCCTTGAACTTGG 59.117 52.381 0.00 0.00 0.00 3.61
3233 3468 6.454795 TGAACTTGGGTGAAGCATATTTTTC 58.545 36.000 0.00 0.00 34.68 2.29
3294 3530 3.312828 GCAGATGCACGAAGATAGGTAG 58.687 50.000 0.00 0.00 41.59 3.18
3325 3588 6.237648 CCAAAACATTGCGAGAATCTTATTGC 60.238 38.462 0.00 0.00 0.00 3.56
3328 3591 4.332543 ACATTGCGAGAATCTTATTGCGAA 59.667 37.500 0.00 0.00 31.51 4.70
3352 3615 3.876309 AAGGTAAAGTGAGGCAAGGAA 57.124 42.857 0.00 0.00 0.00 3.36
3353 3616 4.388577 AAGGTAAAGTGAGGCAAGGAAT 57.611 40.909 0.00 0.00 0.00 3.01
3425 3716 3.276857 CAGCAAGAATCCTGTGCTATGT 58.723 45.455 3.80 0.00 46.66 2.29
3492 3787 6.939730 AGAAGACTTTCTGAAGGATTCCTTTC 59.060 38.462 18.89 10.53 46.93 2.62
3496 3791 6.605119 ACTTTCTGAAGGATTCCTTTCTCAA 58.395 36.000 18.89 9.41 46.93 3.02
3519 3814 4.166725 AGTCATATTTGGGAGAAGCATGGA 59.833 41.667 0.00 0.00 0.00 3.41
3552 3849 1.589716 GCTGGCTTCACGCTCCATTT 61.590 55.000 0.00 0.00 39.13 2.32
3553 3850 0.883833 CTGGCTTCACGCTCCATTTT 59.116 50.000 0.00 0.00 39.13 1.82
3586 3886 1.135315 CATCGCGGTTTGAGCCTTG 59.865 57.895 6.13 0.00 0.00 3.61
3601 3901 4.113354 GAGCCTTGTAGTCTTTATGACCG 58.887 47.826 0.00 0.00 46.46 4.79
3644 3944 6.628644 AGGAGGCTTTATTACCTGGATATC 57.371 41.667 0.00 0.00 36.05 1.63
3674 3974 9.774071 AAGTTTAGTACTAACCCTAATCCACTA 57.226 33.333 14.96 0.00 35.54 2.74
3688 3988 6.320164 CCTAATCCACTATGCTAGCCTAGTAG 59.680 46.154 26.13 20.93 0.00 2.57
3690 3990 5.837770 TCCACTATGCTAGCCTAGTAGTA 57.162 43.478 26.13 14.90 0.00 1.82
3691 3991 5.558818 TCCACTATGCTAGCCTAGTAGTAC 58.441 45.833 26.13 0.00 0.00 2.73
3692 3992 5.310068 TCCACTATGCTAGCCTAGTAGTACT 59.690 44.000 26.13 8.14 0.00 2.73
3693 3993 6.499699 TCCACTATGCTAGCCTAGTAGTACTA 59.500 42.308 26.13 9.66 0.00 1.82
3694 3994 7.016957 TCCACTATGCTAGCCTAGTAGTACTAA 59.983 40.741 26.13 6.22 29.00 2.24
3697 3997 9.810870 ACTATGCTAGCCTAGTAGTACTAAAAT 57.189 33.333 25.64 4.86 29.00 1.82
3717 4305 6.628919 AAATCCAACGCTGTACTAGTTTTT 57.371 33.333 0.00 0.00 0.00 1.94
3757 4345 0.106149 ACTGGTTGGACCGAACACTC 59.894 55.000 0.00 0.00 42.58 3.51
3797 4385 9.962783 CATAGTTGTACTAGTAAATCACCCTAC 57.037 37.037 3.61 0.00 33.66 3.18
3822 4410 0.601558 TTAGACACTGCTCCGTGGTC 59.398 55.000 6.38 0.00 39.19 4.02
3826 4414 2.203640 ACTGCTCCGTGGTCTGGA 60.204 61.111 0.00 0.00 0.00 3.86
3830 4418 0.250295 TGCTCCGTGGTCTGGAAAAG 60.250 55.000 0.00 0.00 34.44 2.27
3835 4426 2.143925 CCGTGGTCTGGAAAAGAACTC 58.856 52.381 0.00 0.00 43.71 3.01
3838 4429 3.243907 CGTGGTCTGGAAAAGAACTCTCT 60.244 47.826 0.00 0.00 43.71 3.10
3852 4443 4.747605 AGAACTCTCTTTTTCTCTGTTCGC 59.252 41.667 0.00 0.00 37.82 4.70
3856 4447 2.404215 TCTTTTTCTCTGTTCGCCTCG 58.596 47.619 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.101332 TGAAATTTTCTAACCATGCAGCATC 58.899 36.000 4.38 0.00 0.00 3.91
1 2 6.040209 TGAAATTTTCTAACCATGCAGCAT 57.960 33.333 0.52 0.52 0.00 3.79
2 3 5.465532 TGAAATTTTCTAACCATGCAGCA 57.534 34.783 10.33 0.00 0.00 4.41
3 4 5.292589 CCATGAAATTTTCTAACCATGCAGC 59.707 40.000 10.33 0.00 32.43 5.25
4 5 5.292589 GCCATGAAATTTTCTAACCATGCAG 59.707 40.000 10.33 0.91 32.43 4.41
5 6 5.177326 GCCATGAAATTTTCTAACCATGCA 58.823 37.500 10.33 0.00 32.43 3.96
6 7 5.177326 TGCCATGAAATTTTCTAACCATGC 58.823 37.500 10.33 6.39 32.43 4.06
7 8 6.632909 TCTGCCATGAAATTTTCTAACCATG 58.367 36.000 10.33 7.84 33.28 3.66
8 9 6.855763 TCTGCCATGAAATTTTCTAACCAT 57.144 33.333 10.33 0.00 0.00 3.55
9 10 6.662865 TTCTGCCATGAAATTTTCTAACCA 57.337 33.333 10.33 2.88 0.00 3.67
10 11 5.578336 GCTTCTGCCATGAAATTTTCTAACC 59.422 40.000 10.33 0.00 0.00 2.85
11 12 6.089954 GTGCTTCTGCCATGAAATTTTCTAAC 59.910 38.462 10.33 0.00 38.71 2.34
12 13 6.158598 GTGCTTCTGCCATGAAATTTTCTAA 58.841 36.000 10.33 0.00 38.71 2.10
13 14 5.619757 CGTGCTTCTGCCATGAAATTTTCTA 60.620 40.000 10.33 0.00 38.71 2.10
14 15 4.563061 GTGCTTCTGCCATGAAATTTTCT 58.437 39.130 10.33 0.00 38.71 2.52
15 16 3.365820 CGTGCTTCTGCCATGAAATTTTC 59.634 43.478 2.05 2.05 38.71 2.29
16 17 3.319755 CGTGCTTCTGCCATGAAATTTT 58.680 40.909 0.00 0.00 38.71 1.82
17 18 2.927871 GCGTGCTTCTGCCATGAAATTT 60.928 45.455 0.00 0.00 38.71 1.82
18 19 1.403249 GCGTGCTTCTGCCATGAAATT 60.403 47.619 0.00 0.00 38.71 1.82
19 20 0.171903 GCGTGCTTCTGCCATGAAAT 59.828 50.000 0.00 0.00 38.71 2.17
20 21 1.171549 TGCGTGCTTCTGCCATGAAA 61.172 50.000 0.00 0.00 38.71 2.69
21 22 1.171549 TTGCGTGCTTCTGCCATGAA 61.172 50.000 0.00 0.00 38.71 2.57
22 23 1.579964 CTTGCGTGCTTCTGCCATGA 61.580 55.000 0.00 0.00 38.71 3.07
23 24 1.154093 CTTGCGTGCTTCTGCCATG 60.154 57.895 0.00 0.00 38.71 3.66
24 25 2.986306 GCTTGCGTGCTTCTGCCAT 61.986 57.895 0.00 0.00 38.71 4.40
25 26 3.663176 GCTTGCGTGCTTCTGCCA 61.663 61.111 0.00 0.00 38.71 4.92
26 27 2.682256 TTTGCTTGCGTGCTTCTGCC 62.682 55.000 2.56 0.00 38.71 4.85
27 28 1.273455 CTTTGCTTGCGTGCTTCTGC 61.273 55.000 2.56 0.00 40.20 4.26
28 29 0.308684 TCTTTGCTTGCGTGCTTCTG 59.691 50.000 2.56 0.00 0.00 3.02
29 30 1.002033 CTTCTTTGCTTGCGTGCTTCT 60.002 47.619 2.56 0.00 0.00 2.85
30 31 1.002468 TCTTCTTTGCTTGCGTGCTTC 60.002 47.619 2.56 0.00 0.00 3.86
31 32 1.024271 TCTTCTTTGCTTGCGTGCTT 58.976 45.000 2.56 0.00 0.00 3.91
32 33 1.242076 ATCTTCTTTGCTTGCGTGCT 58.758 45.000 2.56 0.00 0.00 4.40
33 34 2.900122 TATCTTCTTTGCTTGCGTGC 57.100 45.000 0.00 0.00 0.00 5.34
34 35 3.545078 GCATTATCTTCTTTGCTTGCGTG 59.455 43.478 0.00 0.00 32.41 5.34
35 36 3.191162 TGCATTATCTTCTTTGCTTGCGT 59.809 39.130 0.00 0.00 36.10 5.24
36 37 3.761657 TGCATTATCTTCTTTGCTTGCG 58.238 40.909 0.00 0.00 36.10 4.85
37 38 5.166398 ACTTGCATTATCTTCTTTGCTTGC 58.834 37.500 0.00 0.00 36.10 4.01
38 39 7.647907 AAACTTGCATTATCTTCTTTGCTTG 57.352 32.000 0.00 0.00 36.10 4.01
39 40 9.933723 ATAAAACTTGCATTATCTTCTTTGCTT 57.066 25.926 0.00 0.00 36.10 3.91
40 41 9.362539 CATAAAACTTGCATTATCTTCTTTGCT 57.637 29.630 0.00 0.00 36.10 3.91
41 42 8.598075 CCATAAAACTTGCATTATCTTCTTTGC 58.402 33.333 0.00 0.00 35.67 3.68
42 43 8.598075 GCCATAAAACTTGCATTATCTTCTTTG 58.402 33.333 0.00 0.00 0.00 2.77
43 44 8.313292 TGCCATAAAACTTGCATTATCTTCTTT 58.687 29.630 0.00 0.00 0.00 2.52
44 45 7.839907 TGCCATAAAACTTGCATTATCTTCTT 58.160 30.769 0.00 0.00 0.00 2.52
45 46 7.408756 TGCCATAAAACTTGCATTATCTTCT 57.591 32.000 0.00 0.00 0.00 2.85
46 47 8.382875 GTTTGCCATAAAACTTGCATTATCTTC 58.617 33.333 0.00 0.00 37.13 2.87
47 48 7.877097 TGTTTGCCATAAAACTTGCATTATCTT 59.123 29.630 0.00 0.00 40.11 2.40
48 49 7.385267 TGTTTGCCATAAAACTTGCATTATCT 58.615 30.769 0.00 0.00 40.11 1.98
49 50 7.593875 TGTTTGCCATAAAACTTGCATTATC 57.406 32.000 0.00 0.00 40.11 1.75
50 51 7.976135 TTGTTTGCCATAAAACTTGCATTAT 57.024 28.000 0.00 0.00 40.11 1.28
51 52 7.792374 TTTGTTTGCCATAAAACTTGCATTA 57.208 28.000 0.00 0.00 40.11 1.90
52 53 6.690194 TTTGTTTGCCATAAAACTTGCATT 57.310 29.167 0.00 0.00 40.11 3.56
53 54 6.880942 ATTTGTTTGCCATAAAACTTGCAT 57.119 29.167 0.00 0.00 40.11 3.96
54 55 7.519649 GCTTATTTGTTTGCCATAAAACTTGCA 60.520 33.333 1.95 0.00 40.11 4.08
55 56 6.796552 GCTTATTTGTTTGCCATAAAACTTGC 59.203 34.615 1.95 0.00 40.11 4.01
56 57 8.086851 AGCTTATTTGTTTGCCATAAAACTTG 57.913 30.769 1.95 0.00 40.11 3.16
57 58 9.942850 ATAGCTTATTTGTTTGCCATAAAACTT 57.057 25.926 0.00 0.00 40.11 2.66
58 59 9.586435 GATAGCTTATTTGTTTGCCATAAAACT 57.414 29.630 0.00 0.00 40.11 2.66
59 60 9.364989 TGATAGCTTATTTGTTTGCCATAAAAC 57.635 29.630 0.00 0.00 39.90 2.43
60 61 9.935241 TTGATAGCTTATTTGTTTGCCATAAAA 57.065 25.926 0.00 0.00 0.00 1.52
61 62 9.585099 CTTGATAGCTTATTTGTTTGCCATAAA 57.415 29.630 0.00 0.00 0.00 1.40
62 63 8.965819 TCTTGATAGCTTATTTGTTTGCCATAA 58.034 29.630 0.00 0.00 0.00 1.90
63 64 8.518430 TCTTGATAGCTTATTTGTTTGCCATA 57.482 30.769 0.00 0.00 0.00 2.74
64 65 7.408756 TCTTGATAGCTTATTTGTTTGCCAT 57.591 32.000 0.00 0.00 0.00 4.40
65 66 6.832520 TCTTGATAGCTTATTTGTTTGCCA 57.167 33.333 0.00 0.00 0.00 4.92
66 67 7.090173 TGTTCTTGATAGCTTATTTGTTTGCC 58.910 34.615 0.00 0.00 0.00 4.52
67 68 8.519492 TTGTTCTTGATAGCTTATTTGTTTGC 57.481 30.769 0.00 0.00 0.00 3.68
77 78 9.412460 TCCATCAATATTTGTTCTTGATAGCTT 57.588 29.630 0.00 0.00 37.48 3.74
78 79 8.985315 TCCATCAATATTTGTTCTTGATAGCT 57.015 30.769 0.00 0.00 37.48 3.32
82 83 8.426489 CCCATTCCATCAATATTTGTTCTTGAT 58.574 33.333 0.00 0.00 39.55 2.57
83 84 7.618907 TCCCATTCCATCAATATTTGTTCTTGA 59.381 33.333 0.00 0.00 33.75 3.02
84 85 7.707893 GTCCCATTCCATCAATATTTGTTCTTG 59.292 37.037 0.00 0.00 0.00 3.02
85 86 7.399765 TGTCCCATTCCATCAATATTTGTTCTT 59.600 33.333 0.00 0.00 0.00 2.52
86 87 6.896860 TGTCCCATTCCATCAATATTTGTTCT 59.103 34.615 0.00 0.00 0.00 3.01
87 88 6.980397 GTGTCCCATTCCATCAATATTTGTTC 59.020 38.462 0.00 0.00 0.00 3.18
88 89 6.440010 TGTGTCCCATTCCATCAATATTTGTT 59.560 34.615 0.00 0.00 0.00 2.83
89 90 5.957168 TGTGTCCCATTCCATCAATATTTGT 59.043 36.000 0.00 0.00 0.00 2.83
90 91 6.468333 TGTGTCCCATTCCATCAATATTTG 57.532 37.500 0.00 0.00 0.00 2.32
91 92 6.840181 TGATGTGTCCCATTCCATCAATATTT 59.160 34.615 0.00 0.00 40.36 1.40
92 93 6.266103 GTGATGTGTCCCATTCCATCAATATT 59.734 38.462 3.01 0.00 43.66 1.28
93 94 5.771666 GTGATGTGTCCCATTCCATCAATAT 59.228 40.000 3.01 0.00 43.66 1.28
94 95 5.132502 GTGATGTGTCCCATTCCATCAATA 58.867 41.667 3.01 0.00 43.66 1.90
95 96 3.956199 GTGATGTGTCCCATTCCATCAAT 59.044 43.478 3.01 0.00 43.66 2.57
96 97 3.355378 GTGATGTGTCCCATTCCATCAA 58.645 45.455 3.01 0.00 43.66 2.57
97 98 2.357050 GGTGATGTGTCCCATTCCATCA 60.357 50.000 0.00 0.00 40.87 3.07
121 122 3.055385 CGTCTGACCTATTTCTTTGGGGA 60.055 47.826 1.55 0.00 0.00 4.81
123 124 3.684788 CACGTCTGACCTATTTCTTTGGG 59.315 47.826 1.55 0.00 0.00 4.12
125 126 4.377431 GCACACGTCTGACCTATTTCTTTG 60.377 45.833 1.55 0.00 0.00 2.77
133 134 1.583495 CGAGGCACACGTCTGACCTA 61.583 60.000 1.55 0.00 37.71 3.08
145 146 1.301677 CCTCCTTTCTTGCGAGGCAC 61.302 60.000 0.00 0.00 38.71 5.01
149 150 1.273606 TGAGACCTCCTTTCTTGCGAG 59.726 52.381 0.00 0.00 0.00 5.03
190 191 9.851686 TTGGTATTTCATATTGCTGAACTAGAT 57.148 29.630 0.00 0.00 34.96 1.98
226 251 1.001020 CCATTGCCACCCACAGCTA 60.001 57.895 0.00 0.00 0.00 3.32
238 263 2.482490 GGACCATCTGAAATGCCATTGC 60.482 50.000 0.00 0.00 38.26 3.56
239 264 2.761767 TGGACCATCTGAAATGCCATTG 59.238 45.455 0.00 0.00 0.00 2.82
240 265 3.104519 TGGACCATCTGAAATGCCATT 57.895 42.857 0.00 0.00 0.00 3.16
241 266 2.832643 TGGACCATCTGAAATGCCAT 57.167 45.000 0.00 0.00 0.00 4.40
242 267 2.601240 TTGGACCATCTGAAATGCCA 57.399 45.000 0.00 0.00 0.00 4.92
243 268 2.827921 ACTTTGGACCATCTGAAATGCC 59.172 45.455 0.00 0.00 0.00 4.40
244 269 4.240096 CAACTTTGGACCATCTGAAATGC 58.760 43.478 0.00 0.00 0.00 3.56
284 309 7.573710 TGGTATTAGGTAGCATTGAGAAATGT 58.426 34.615 0.00 0.00 35.96 2.71
288 313 5.130311 TGCTGGTATTAGGTAGCATTGAGAA 59.870 40.000 0.00 0.00 40.88 2.87
289 314 4.653801 TGCTGGTATTAGGTAGCATTGAGA 59.346 41.667 0.00 0.00 40.88 3.27
342 367 2.575735 TGTGGCTCATGGTCCTTAATCA 59.424 45.455 0.00 0.00 0.00 2.57
454 479 3.244044 TGGAAAATGGCTGGCTGTTTTAC 60.244 43.478 15.49 15.49 0.00 2.01
483 509 2.867624 AGGCTGAATGTTTTGCAGAGA 58.132 42.857 0.00 0.00 0.00 3.10
575 601 6.760291 ACAGAGGAAGTACAAAAGTAGGAAG 58.240 40.000 0.00 0.00 0.00 3.46
590 616 9.400638 CGCTCTTATATTAGTTTACAGAGGAAG 57.599 37.037 0.00 0.00 0.00 3.46
591 617 8.910944 ACGCTCTTATATTAGTTTACAGAGGAA 58.089 33.333 0.00 0.00 0.00 3.36
592 618 8.461249 ACGCTCTTATATTAGTTTACAGAGGA 57.539 34.615 0.00 0.00 0.00 3.71
593 619 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
625 651 6.885922 AGGGCGTTTAGATCACTATTTTAGT 58.114 36.000 0.00 0.00 40.28 2.24
626 652 7.787725 AAGGGCGTTTAGATCACTATTTTAG 57.212 36.000 0.00 0.00 0.00 1.85
632 658 9.305555 ACTAATATAAGGGCGTTTAGATCACTA 57.694 33.333 0.00 0.00 0.00 2.74
633 659 8.191534 ACTAATATAAGGGCGTTTAGATCACT 57.808 34.615 0.00 0.00 0.00 3.41
634 660 8.828688 AACTAATATAAGGGCGTTTAGATCAC 57.171 34.615 0.00 0.00 0.00 3.06
637 663 9.415544 CGTAAACTAATATAAGGGCGTTTAGAT 57.584 33.333 0.00 0.00 30.36 1.98
638 664 7.867403 CCGTAAACTAATATAAGGGCGTTTAGA 59.133 37.037 0.00 0.00 30.36 2.10
639 665 7.867403 TCCGTAAACTAATATAAGGGCGTTTAG 59.133 37.037 0.00 0.00 30.36 1.85
640 666 7.721402 TCCGTAAACTAATATAAGGGCGTTTA 58.279 34.615 0.00 0.00 0.00 2.01
641 667 6.581712 TCCGTAAACTAATATAAGGGCGTTT 58.418 36.000 0.00 0.00 0.00 3.60
642 668 6.160576 TCCGTAAACTAATATAAGGGCGTT 57.839 37.500 0.00 0.00 0.00 4.84
643 669 5.279156 CCTCCGTAAACTAATATAAGGGCGT 60.279 44.000 0.00 0.00 0.00 5.68
644 670 5.166398 CCTCCGTAAACTAATATAAGGGCG 58.834 45.833 0.00 0.00 0.00 6.13
645 671 5.246883 TCCCTCCGTAAACTAATATAAGGGC 59.753 44.000 0.00 0.00 40.64 5.19
646 672 6.496218 ACTCCCTCCGTAAACTAATATAAGGG 59.504 42.308 0.00 0.00 41.93 3.95
647 673 7.536159 ACTCCCTCCGTAAACTAATATAAGG 57.464 40.000 0.00 0.00 0.00 2.69
649 675 9.812347 TGATACTCCCTCCGTAAACTAATATAA 57.188 33.333 0.00 0.00 0.00 0.98
650 676 9.986157 ATGATACTCCCTCCGTAAACTAATATA 57.014 33.333 0.00 0.00 0.00 0.86
651 677 8.896722 ATGATACTCCCTCCGTAAACTAATAT 57.103 34.615 0.00 0.00 0.00 1.28
652 678 9.458727 CTATGATACTCCCTCCGTAAACTAATA 57.541 37.037 0.00 0.00 0.00 0.98
653 679 8.168725 TCTATGATACTCCCTCCGTAAACTAAT 58.831 37.037 0.00 0.00 0.00 1.73
654 680 7.520798 TCTATGATACTCCCTCCGTAAACTAA 58.479 38.462 0.00 0.00 0.00 2.24
655 681 7.083062 TCTATGATACTCCCTCCGTAAACTA 57.917 40.000 0.00 0.00 0.00 2.24
656 682 5.950023 TCTATGATACTCCCTCCGTAAACT 58.050 41.667 0.00 0.00 0.00 2.66
657 683 6.040166 TGTTCTATGATACTCCCTCCGTAAAC 59.960 42.308 0.00 0.00 0.00 2.01
658 684 6.131264 TGTTCTATGATACTCCCTCCGTAAA 58.869 40.000 0.00 0.00 0.00 2.01
659 685 5.698104 TGTTCTATGATACTCCCTCCGTAA 58.302 41.667 0.00 0.00 0.00 3.18
660 686 5.314718 TGTTCTATGATACTCCCTCCGTA 57.685 43.478 0.00 0.00 0.00 4.02
661 687 4.180377 TGTTCTATGATACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
662 688 4.142578 CGATGTTCTATGATACTCCCTCCG 60.143 50.000 0.00 0.00 0.00 4.63
663 689 5.010933 TCGATGTTCTATGATACTCCCTCC 58.989 45.833 0.00 0.00 0.00 4.30
664 690 6.207810 ACTTCGATGTTCTATGATACTCCCTC 59.792 42.308 0.00 0.00 0.00 4.30
665 691 6.071984 ACTTCGATGTTCTATGATACTCCCT 58.928 40.000 0.00 0.00 0.00 4.20
666 692 6.334102 ACTTCGATGTTCTATGATACTCCC 57.666 41.667 0.00 0.00 0.00 4.30
667 693 7.168302 CACAACTTCGATGTTCTATGATACTCC 59.832 40.741 13.30 0.00 0.00 3.85
668 694 7.702772 ACACAACTTCGATGTTCTATGATACTC 59.297 37.037 13.30 0.00 0.00 2.59
669 695 7.489435 CACACAACTTCGATGTTCTATGATACT 59.511 37.037 13.30 0.00 0.00 2.12
670 696 7.275779 ACACACAACTTCGATGTTCTATGATAC 59.724 37.037 13.30 0.00 0.00 2.24
769 795 9.400638 CGGACTGTTAGTATCAGAATATTCTTC 57.599 37.037 15.49 6.10 34.74 2.87
829 856 6.748333 TCTTCTGCTAATCATTTCCTTGTG 57.252 37.500 0.00 0.00 0.00 3.33
850 877 4.357918 AGCTGTACTTGGATTGTGTTCT 57.642 40.909 0.00 0.00 0.00 3.01
872 899 2.618241 CCTGCTGACTTGTTGCTGTTTA 59.382 45.455 0.00 0.00 0.00 2.01
940 977 0.039165 GCAAGTTAGTTGGCTGCACC 60.039 55.000 0.50 0.00 36.56 5.01
1060 1100 2.827383 AAAGCGAGCTCGAGCCTGAC 62.827 60.000 38.74 19.07 43.38 3.51
1069 1109 1.996191 ACGAATCAAGAAAGCGAGCTC 59.004 47.619 2.73 2.73 0.00 4.09
1074 1114 4.166523 TCTGTAGACGAATCAAGAAAGCG 58.833 43.478 0.00 0.00 0.00 4.68
1088 1128 4.985409 CAGAACCAGTTTCACTCTGTAGAC 59.015 45.833 0.00 0.00 36.57 2.59
1162 1202 5.894393 AGATAGCTTACCTCAAGAGCAAGTA 59.106 40.000 0.00 0.00 38.85 2.24
1207 1254 6.891388 AGGTCCGGAATTATATACAACACAA 58.109 36.000 5.23 0.00 0.00 3.33
1212 1259 7.008332 TCTCAGAGGTCCGGAATTATATACAA 58.992 38.462 5.23 0.00 0.00 2.41
1220 1270 1.208293 GCTTCTCAGAGGTCCGGAATT 59.792 52.381 5.23 0.00 0.00 2.17
1221 1271 0.827368 GCTTCTCAGAGGTCCGGAAT 59.173 55.000 5.23 0.00 0.00 3.01
1228 1278 6.299141 TGATAAACAAAAGCTTCTCAGAGGT 58.701 36.000 0.00 0.00 0.00 3.85
1250 1300 3.292492 AATTCAGCTCTCATGCCATGA 57.708 42.857 7.26 7.26 37.76 3.07
1253 1303 2.372264 GGAAATTCAGCTCTCATGCCA 58.628 47.619 0.00 0.00 0.00 4.92
1255 1305 1.332997 CGGGAAATTCAGCTCTCATGC 59.667 52.381 0.00 0.00 0.00 4.06
1353 1403 5.409826 CCTACACAAAGAAAAGCTCCTACAG 59.590 44.000 0.00 0.00 0.00 2.74
1407 1457 3.574354 ATCCTCAGCCCTTTGAAGATC 57.426 47.619 0.00 0.00 0.00 2.75
1452 1505 3.092301 GGAACAAGAAAGGAAGATGGGG 58.908 50.000 0.00 0.00 0.00 4.96
1461 1514 1.348036 AGGACCGAGGAACAAGAAAGG 59.652 52.381 0.00 0.00 0.00 3.11
1527 1580 6.651643 GGGCCCTTGTTCGTTTTATTTTTATT 59.348 34.615 17.04 0.00 0.00 1.40
1529 1582 5.070047 TGGGCCCTTGTTCGTTTTATTTTTA 59.930 36.000 25.70 0.00 0.00 1.52
1537 1648 1.396607 GGTTGGGCCCTTGTTCGTTT 61.397 55.000 25.70 0.00 0.00 3.60
1540 1651 3.361977 CGGTTGGGCCCTTGTTCG 61.362 66.667 25.70 15.48 0.00 3.95
1541 1652 2.989253 CCGGTTGGGCCCTTGTTC 60.989 66.667 25.70 8.44 0.00 3.18
1632 1743 9.885934 CAGTAGTTGAGTACATGTATCTATCAC 57.114 37.037 9.18 0.00 0.00 3.06
1638 1749 5.749109 GGCACAGTAGTTGAGTACATGTATC 59.251 44.000 9.18 8.33 0.00 2.24
1642 1753 4.193826 AGGCACAGTAGTTGAGTACATG 57.806 45.455 0.00 0.00 0.00 3.21
1643 1754 5.163405 CCATAGGCACAGTAGTTGAGTACAT 60.163 44.000 0.00 0.00 0.00 2.29
1645 1756 4.683832 CCATAGGCACAGTAGTTGAGTAC 58.316 47.826 0.00 0.00 0.00 2.73
1662 1774 5.718724 TCTGTGATGTCTCATAGCCATAG 57.281 43.478 0.00 0.00 39.68 2.23
1761 1873 7.657350 ATGCTTTACATCTGTAGGGAACCCG 62.657 48.000 4.09 0.00 43.78 5.28
1812 1924 0.742281 CCCAGCTTGGAGATGTGTCG 60.742 60.000 0.00 0.00 40.96 4.35
1918 2034 7.694886 TCAGTGACAATACTAGACGACAATAG 58.305 38.462 0.00 0.00 0.00 1.73
1919 2035 7.619964 TCAGTGACAATACTAGACGACAATA 57.380 36.000 0.00 0.00 0.00 1.90
1920 2036 6.510879 TCAGTGACAATACTAGACGACAAT 57.489 37.500 0.00 0.00 0.00 2.71
1921 2037 5.952526 TCAGTGACAATACTAGACGACAA 57.047 39.130 0.00 0.00 0.00 3.18
1926 2042 9.416794 CATTATCCATCAGTGACAATACTAGAC 57.583 37.037 0.00 0.00 0.00 2.59
1987 2103 3.129871 GCCTGCAGACATATCTTCTGAC 58.870 50.000 17.39 6.67 42.81 3.51
1997 2113 0.825410 CTCAGAGAGCCTGCAGACAT 59.175 55.000 17.39 0.00 42.62 3.06
2138 2254 5.016173 CACCCCTGAATGAAACTTTATCCA 58.984 41.667 0.00 0.00 0.00 3.41
2195 2311 3.482472 CGTCACGACACTGACATATAAGC 59.518 47.826 0.00 0.00 40.67 3.09
2265 2416 8.800370 TTTTGCAATAACAGAGTCATATGGTA 57.200 30.769 0.00 0.00 0.00 3.25
2384 2609 1.517538 ATGGAGGCAACCAATGGGGA 61.518 55.000 3.55 0.00 43.47 4.81
2431 2656 4.592942 TGGCTCAAAGTCTGCAGAAATAT 58.407 39.130 20.19 2.09 0.00 1.28
2435 2660 1.888215 CTGGCTCAAAGTCTGCAGAA 58.112 50.000 20.19 0.61 0.00 3.02
2480 2705 1.815003 GCTGGTCTGTCTGGGAAATTG 59.185 52.381 0.00 0.00 0.00 2.32
2687 2912 5.964958 ACATGTATTATATGCAAGGTGGC 57.035 39.130 0.00 0.00 0.00 5.01
2778 3012 6.978080 TCAACTTCCAACTTACTTTTGCATTC 59.022 34.615 0.00 0.00 0.00 2.67
2806 3040 6.146021 CCAAAGCTTTATGGACAACAAACATC 59.854 38.462 12.25 0.00 39.12 3.06
2813 3047 5.569413 CGATACCAAAGCTTTATGGACAAC 58.431 41.667 21.51 8.35 39.12 3.32
2814 3048 4.095782 GCGATACCAAAGCTTTATGGACAA 59.904 41.667 21.51 8.59 39.12 3.18
2836 3070 2.907910 AACAAGATCTGTGATTGCGC 57.092 45.000 0.00 0.00 38.67 6.09
2890 3124 4.248058 GCATGCCTTTGATTAGCACTTTT 58.752 39.130 6.36 0.00 39.77 2.27
2891 3125 3.368739 GGCATGCCTTTGATTAGCACTTT 60.369 43.478 29.98 0.00 39.77 2.66
3079 3313 4.450419 GTCATGTTCTGTCTGAAGGAAGTG 59.550 45.833 0.00 0.00 35.01 3.16
3092 3326 5.824624 AGCCCATAATGTTAGTCATGTTCTG 59.175 40.000 0.00 0.00 36.81 3.02
3094 3328 5.506317 GCAGCCCATAATGTTAGTCATGTTC 60.506 44.000 0.00 0.00 36.81 3.18
3095 3329 4.339247 GCAGCCCATAATGTTAGTCATGTT 59.661 41.667 0.00 0.00 36.81 2.71
3101 3336 2.025416 TGTGGCAGCCCATAATGTTAGT 60.025 45.455 9.64 0.00 44.51 2.24
3104 3339 2.163810 ATGTGGCAGCCCATAATGTT 57.836 45.000 9.64 0.00 44.51 2.71
3129 3364 4.328169 GCAAAATGCTGATCAAAGTTAGCC 59.672 41.667 0.00 0.00 40.96 3.93
3154 3389 4.631813 CAGGCAGATTGTTACTGACCTAAC 59.368 45.833 0.00 0.00 43.67 2.34
3214 3449 5.083122 TCCAGAAAAATATGCTTCACCCAA 58.917 37.500 0.00 0.00 0.00 4.12
3215 3450 4.671831 TCCAGAAAAATATGCTTCACCCA 58.328 39.130 0.00 0.00 0.00 4.51
3216 3451 5.859205 ATCCAGAAAAATATGCTTCACCC 57.141 39.130 0.00 0.00 0.00 4.61
3233 3468 7.120873 CCATCTCCTTTTGAGCAATATATCCAG 59.879 40.741 0.00 0.00 41.18 3.86
3244 3479 6.603599 ACCTTATAAACCATCTCCTTTTGAGC 59.396 38.462 0.00 0.00 41.18 4.26
3252 3487 4.141482 TGCCTGACCTTATAAACCATCTCC 60.141 45.833 0.00 0.00 0.00 3.71
3294 3530 2.088178 CGCAATGTTTTGGCGAGGC 61.088 57.895 0.00 0.00 35.68 4.70
3325 3588 4.250464 TGCCTCACTTTACCTTATGTTCG 58.750 43.478 0.00 0.00 0.00 3.95
3328 3591 4.288626 TCCTTGCCTCACTTTACCTTATGT 59.711 41.667 0.00 0.00 0.00 2.29
3425 3716 3.399330 CTCTTCTTTTCGGTAAGTGCCA 58.601 45.455 0.00 0.00 0.00 4.92
3460 3754 7.736447 TCCTTCAGAAAGTCTTCTTTTGATC 57.264 36.000 0.00 0.00 42.99 2.92
3461 3755 8.703378 AATCCTTCAGAAAGTCTTCTTTTGAT 57.297 30.769 0.00 0.00 42.99 2.57
3492 3787 5.188434 TGCTTCTCCCAAATATGACTTGAG 58.812 41.667 0.00 0.00 0.00 3.02
3496 3791 4.166725 TCCATGCTTCTCCCAAATATGACT 59.833 41.667 0.00 0.00 0.00 3.41
3519 3814 0.892814 GCCAGCTTCAGCCTGAAACT 60.893 55.000 8.74 6.57 43.38 2.66
3552 3849 0.459585 GATGCGAGCTCCAACGGTAA 60.460 55.000 8.47 0.00 0.00 2.85
3553 3850 1.141019 GATGCGAGCTCCAACGGTA 59.859 57.895 8.47 0.00 0.00 4.02
3586 3886 4.106197 CAGAGCACGGTCATAAAGACTAC 58.894 47.826 0.00 0.00 46.72 2.73
3674 3974 7.728981 TGGATTTTAGTACTACTAGGCTAGCAT 59.271 37.037 21.26 12.98 31.47 3.79
3688 3988 7.031975 ACTAGTACAGCGTTGGATTTTAGTAC 58.968 38.462 3.74 0.00 0.00 2.73
3690 3990 6.034161 ACTAGTACAGCGTTGGATTTTAGT 57.966 37.500 3.74 2.70 0.00 2.24
3691 3991 6.963049 AACTAGTACAGCGTTGGATTTTAG 57.037 37.500 3.74 2.09 0.00 1.85
3692 3992 7.733402 AAAACTAGTACAGCGTTGGATTTTA 57.267 32.000 3.74 0.00 0.00 1.52
3693 3993 6.628919 AAAACTAGTACAGCGTTGGATTTT 57.371 33.333 3.74 0.00 0.00 1.82
3694 3994 6.628919 AAAAACTAGTACAGCGTTGGATTT 57.371 33.333 3.74 0.00 0.00 2.17
3717 4305 6.198687 CAGTACAGCGTTTCTCAAAATGAAA 58.801 36.000 0.00 0.00 33.93 2.69
3720 4308 4.024048 ACCAGTACAGCGTTTCTCAAAATG 60.024 41.667 0.00 0.00 34.98 2.32
3721 4309 4.134563 ACCAGTACAGCGTTTCTCAAAAT 58.865 39.130 0.00 0.00 0.00 1.82
3722 4310 3.537580 ACCAGTACAGCGTTTCTCAAAA 58.462 40.909 0.00 0.00 0.00 2.44
3757 4345 3.436704 ACAACTATGGACGAACAATGCAG 59.563 43.478 0.00 0.00 0.00 4.41
3797 4385 4.466828 CACGGAGCAGTGTCTAATTTTTG 58.533 43.478 0.00 0.00 37.35 2.44
3830 4418 4.084276 GGCGAACAGAGAAAAAGAGAGTTC 60.084 45.833 0.00 0.00 0.00 3.01
3835 4426 2.410053 CGAGGCGAACAGAGAAAAAGAG 59.590 50.000 0.00 0.00 0.00 2.85
3838 4429 1.508632 CCGAGGCGAACAGAGAAAAA 58.491 50.000 0.00 0.00 0.00 1.94
3852 4443 2.264794 CGGTGAAACTCCCCGAGG 59.735 66.667 0.00 0.00 44.41 4.63



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.