Multiple sequence alignment - TraesCS6A01G136500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G136500 chr6A 100.000 4057 0 0 1 4057 107687564 107683508 0.000000e+00 7492.0
1 TraesCS6A01G136500 chr6B 85.603 1535 140 35 2570 4057 171703654 171702154 0.000000e+00 1535.0
2 TraesCS6A01G136500 chr6B 94.578 830 32 4 1325 2149 171709529 171708708 0.000000e+00 1271.0
3 TraesCS6A01G136500 chr6B 91.465 785 43 10 520 1298 171710352 171709586 0.000000e+00 1057.0
4 TraesCS6A01G136500 chr6B 91.981 636 23 7 2434 3059 171708436 171707819 0.000000e+00 867.0
5 TraesCS6A01G136500 chr6B 81.818 693 60 37 3097 3746 171707810 171707141 4.650000e-144 521.0
6 TraesCS6A01G136500 chr6B 80.190 525 78 14 3537 4057 171031806 171031304 1.780000e-98 370.0
7 TraesCS6A01G136500 chr6B 87.446 231 22 4 1 231 171710764 171710541 4.020000e-65 259.0
8 TraesCS6A01G136500 chr6B 90.206 194 12 3 2154 2347 171708663 171708477 3.130000e-61 246.0
9 TraesCS6A01G136500 chr6B 86.885 61 5 3 500 560 707298455 707298398 9.410000e-07 65.8
10 TraesCS6A01G136500 chr6B 85.246 61 5 4 484 543 657063314 657063371 4.380000e-05 60.2
11 TraesCS6A01G136500 chr6D 92.906 1029 39 11 1324 2347 89308742 89307743 0.000000e+00 1465.0
12 TraesCS6A01G136500 chr6D 84.960 1250 128 40 2797 4001 89305735 89304501 0.000000e+00 1212.0
13 TraesCS6A01G136500 chr6D 84.170 1156 123 40 2891 4001 89304061 89302921 0.000000e+00 1066.0
14 TraesCS6A01G136500 chr6D 90.753 757 31 15 561 1298 89309536 89308800 0.000000e+00 974.0
15 TraesCS6A01G136500 chr6D 84.538 996 96 32 3097 4057 89307067 89306095 0.000000e+00 933.0
16 TraesCS6A01G136500 chr6D 97.430 428 11 0 2632 3059 89307503 89307076 0.000000e+00 730.0
17 TraesCS6A01G136500 chr6D 79.104 536 84 18 3527 4057 89169296 89168784 1.080000e-90 344.0
18 TraesCS6A01G136500 chr6D 82.143 392 57 7 1 388 89323184 89322802 1.410000e-84 324.0
19 TraesCS6A01G136500 chr6D 87.984 258 31 0 3800 4057 89070818 89070561 5.090000e-79 305.0
20 TraesCS6A01G136500 chrUn 84.170 1156 123 40 2891 4001 325918147 325919287 0.000000e+00 1066.0
21 TraesCS6A01G136500 chrUn 95.699 93 4 0 2797 2889 335903880 335903788 2.530000e-32 150.0
22 TraesCS6A01G136500 chrUn 95.699 93 4 0 2797 2889 335906562 335906470 2.530000e-32 150.0
23 TraesCS6A01G136500 chrUn 95.699 93 4 0 2797 2889 458177528 458177436 2.530000e-32 150.0
24 TraesCS6A01G136500 chrUn 79.144 187 34 3 1338 1520 124710292 124710107 1.530000e-24 124.0
25 TraesCS6A01G136500 chr7A 81.869 535 90 5 3525 4057 732156037 732156566 1.030000e-120 444.0
26 TraesCS6A01G136500 chr7A 79.245 265 49 5 2796 3057 646483354 646483615 3.220000e-41 180.0
27 TraesCS6A01G136500 chr7D 79.554 269 49 5 2792 3057 561704681 561704946 1.930000e-43 187.0
28 TraesCS6A01G136500 chr2D 78.075 187 39 2 1334 1519 560991570 560991755 2.560000e-22 117.0
29 TraesCS6A01G136500 chr2D 97.059 34 1 0 2656 2689 324045904 324045937 1.580000e-04 58.4
30 TraesCS6A01G136500 chr5D 80.851 141 27 0 1383 1523 124857612 124857472 1.190000e-20 111.0
31 TraesCS6A01G136500 chr5D 88.506 87 10 0 1437 1523 393801803 393801717 5.550000e-19 106.0
32 TraesCS6A01G136500 chr5A 89.655 87 9 0 1437 1523 495865346 495865260 1.190000e-20 111.0
33 TraesCS6A01G136500 chr2A 77.540 187 40 2 1334 1519 700975952 700976137 1.190000e-20 111.0
34 TraesCS6A01G136500 chr1A 77.778 189 33 8 1335 1520 510281232 510281414 1.540000e-19 108.0
35 TraesCS6A01G136500 chr1D 82.895 76 9 4 478 552 487907477 487907549 9.410000e-07 65.8
36 TraesCS6A01G136500 chr4B 96.875 32 1 0 1219 1250 115101244 115101213 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G136500 chr6A 107683508 107687564 4056 True 7492.000000 7492 100.000000 1 4057 1 chr6A.!!$R1 4056
1 TraesCS6A01G136500 chr6B 171702154 171710764 8610 True 822.285714 1535 89.013857 1 4057 7 chr6B.!!$R3 4056
2 TraesCS6A01G136500 chr6B 171031304 171031806 502 True 370.000000 370 80.190000 3537 4057 1 chr6B.!!$R1 520
3 TraesCS6A01G136500 chr6D 89302921 89309536 6615 True 1063.333333 1465 89.126167 561 4057 6 chr6D.!!$R4 3496
4 TraesCS6A01G136500 chr6D 89168784 89169296 512 True 344.000000 344 79.104000 3527 4057 1 chr6D.!!$R2 530
5 TraesCS6A01G136500 chrUn 325918147 325919287 1140 False 1066.000000 1066 84.170000 2891 4001 1 chrUn.!!$F1 1110
6 TraesCS6A01G136500 chr7A 732156037 732156566 529 False 444.000000 444 81.869000 3525 4057 1 chr7A.!!$F2 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 514 0.044161 GAGCGTGCGTGCGTTTATAG 60.044 55.0 3.11 0.0 40.67 1.31 F
2364 2479 0.031917 TAGCCCCAACCATCGACCTA 60.032 55.0 0.00 0.0 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2387 2502 0.042448 GTTCGACACGTGCAGTTTCC 60.042 55.0 17.22 0.00 0.0 3.13 R
3523 8358 0.035317 AAGATGAAGCGCACCTGACA 59.965 50.0 11.47 0.07 0.0 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.603532 CAGGAGTTGATGCTTAGCTTCA 58.396 45.455 17.09 17.09 40.15 3.02
58 59 3.999663 GAGTTGATGCTTAGCTTCAGTGT 59.000 43.478 19.45 10.50 42.14 3.55
61 62 3.069289 TGATGCTTAGCTTCAGTGTGTG 58.931 45.455 17.09 0.00 37.70 3.82
66 67 3.124297 GCTTAGCTTCAGTGTGTGTGATC 59.876 47.826 0.00 0.00 0.00 2.92
81 82 7.272084 GTGTGTGTGATCTTGAATAATTTGAGC 59.728 37.037 0.00 0.00 0.00 4.26
150 151 6.538742 CGTGATTTGGATGGTTAGTAGACATT 59.461 38.462 0.00 0.00 0.00 2.71
156 157 3.520290 TGGTTAGTAGACATTGCTCCG 57.480 47.619 0.00 0.00 0.00 4.63
159 160 3.491104 GGTTAGTAGACATTGCTCCGAGG 60.491 52.174 0.00 0.00 0.00 4.63
168 169 0.181587 TTGCTCCGAGGTTTGTTCCA 59.818 50.000 0.00 0.00 0.00 3.53
169 170 0.181587 TGCTCCGAGGTTTGTTCCAA 59.818 50.000 0.00 0.00 0.00 3.53
171 172 1.235724 CTCCGAGGTTTGTTCCAACC 58.764 55.000 0.00 0.00 39.33 3.77
172 173 0.179012 TCCGAGGTTTGTTCCAACCC 60.179 55.000 0.00 0.00 39.87 4.11
173 174 1.176619 CCGAGGTTTGTTCCAACCCC 61.177 60.000 0.00 0.00 39.87 4.95
174 175 1.176619 CGAGGTTTGTTCCAACCCCC 61.177 60.000 0.00 0.00 39.87 5.40
175 176 0.187606 GAGGTTTGTTCCAACCCCCT 59.812 55.000 0.00 0.00 39.87 4.79
176 177 0.105709 AGGTTTGTTCCAACCCCCTG 60.106 55.000 0.00 0.00 39.87 4.45
182 183 0.395724 GTTCCAACCCCCTGCTATGG 60.396 60.000 0.00 0.00 0.00 2.74
246 247 7.510549 AACCATACAGTAATGATAATGTGGC 57.489 36.000 0.00 0.00 40.31 5.01
247 248 5.700832 ACCATACAGTAATGATAATGTGGCG 59.299 40.000 0.00 0.00 40.31 5.69
249 250 3.540617 ACAGTAATGATAATGTGGCGCA 58.459 40.909 10.83 1.92 38.78 6.09
257 258 2.645730 TAATGTGGCGCAAACCAATC 57.354 45.000 10.83 0.00 42.70 2.67
259 260 1.832883 ATGTGGCGCAAACCAATCTA 58.167 45.000 10.83 0.00 42.70 1.98
261 262 2.992593 TGTGGCGCAAACCAATCTATA 58.007 42.857 10.83 0.00 42.70 1.31
263 264 2.943033 GTGGCGCAAACCAATCTATAGT 59.057 45.455 10.83 0.00 42.70 2.12
264 265 3.002348 GTGGCGCAAACCAATCTATAGTC 59.998 47.826 10.83 0.00 42.70 2.59
265 266 2.221055 GGCGCAAACCAATCTATAGTCG 59.779 50.000 10.83 0.00 0.00 4.18
266 267 2.864343 GCGCAAACCAATCTATAGTCGT 59.136 45.455 0.30 0.00 0.00 4.34
268 269 4.085210 GCGCAAACCAATCTATAGTCGTAC 60.085 45.833 0.30 0.00 0.00 3.67
270 271 5.276270 GCAAACCAATCTATAGTCGTACGA 58.724 41.667 15.28 15.28 0.00 3.43
280 281 7.180322 TCTATAGTCGTACGATTAGGAGGAT 57.820 40.000 22.57 8.80 29.28 3.24
282 283 8.412456 TCTATAGTCGTACGATTAGGAGGATAG 58.588 40.741 22.57 17.66 29.28 2.08
285 286 4.153835 GTCGTACGATTAGGAGGATAGTGG 59.846 50.000 22.57 0.00 29.28 4.00
289 290 6.036953 CGTACGATTAGGAGGATAGTGGTATC 59.963 46.154 10.44 0.00 35.19 2.24
290 291 5.888901 ACGATTAGGAGGATAGTGGTATCA 58.111 41.667 0.00 0.00 37.39 2.15
304 305 3.653164 TGGTATCACCAGCCTATCAAGA 58.347 45.455 0.00 0.00 44.79 3.02
305 306 4.234550 TGGTATCACCAGCCTATCAAGAT 58.765 43.478 0.00 0.00 44.79 2.40
306 307 4.660303 TGGTATCACCAGCCTATCAAGATT 59.340 41.667 0.00 0.00 44.79 2.40
307 308 5.221722 TGGTATCACCAGCCTATCAAGATTC 60.222 44.000 0.00 0.00 44.79 2.52
308 309 5.221722 GGTATCACCAGCCTATCAAGATTCA 60.222 44.000 0.00 0.00 38.42 2.57
311 312 4.225942 TCACCAGCCTATCAAGATTCAAGT 59.774 41.667 0.00 0.00 0.00 3.16
312 313 4.574013 CACCAGCCTATCAAGATTCAAGTC 59.426 45.833 0.00 0.00 0.00 3.01
313 314 4.472833 ACCAGCCTATCAAGATTCAAGTCT 59.527 41.667 0.00 0.00 0.00 3.24
314 315 5.045286 ACCAGCCTATCAAGATTCAAGTCTT 60.045 40.000 0.00 0.00 38.95 3.01
315 316 6.156949 ACCAGCCTATCAAGATTCAAGTCTTA 59.843 38.462 0.00 0.00 36.33 2.10
316 317 6.705381 CCAGCCTATCAAGATTCAAGTCTTAG 59.295 42.308 0.00 0.00 36.33 2.18
317 318 7.418368 CCAGCCTATCAAGATTCAAGTCTTAGA 60.418 40.741 0.00 0.00 36.33 2.10
318 319 8.149647 CAGCCTATCAAGATTCAAGTCTTAGAT 58.850 37.037 0.00 0.00 36.33 1.98
330 331 9.798994 ATTCAAGTCTTAGATTTTCATTGATGC 57.201 29.630 0.00 0.00 0.00 3.91
331 332 8.571461 TCAAGTCTTAGATTTTCATTGATGCT 57.429 30.769 0.00 0.00 0.00 3.79
332 333 8.671921 TCAAGTCTTAGATTTTCATTGATGCTC 58.328 33.333 0.00 0.00 0.00 4.26
333 334 7.244166 AGTCTTAGATTTTCATTGATGCTCG 57.756 36.000 0.00 0.00 0.00 5.03
334 335 5.906285 GTCTTAGATTTTCATTGATGCTCGC 59.094 40.000 0.00 0.00 0.00 5.03
335 336 5.585844 TCTTAGATTTTCATTGATGCTCGCA 59.414 36.000 0.00 0.00 0.00 5.10
336 337 4.913335 AGATTTTCATTGATGCTCGCAT 57.087 36.364 3.70 3.70 39.69 4.73
337 338 5.258456 AGATTTTCATTGATGCTCGCATT 57.742 34.783 5.79 0.00 36.70 3.56
338 339 5.657474 AGATTTTCATTGATGCTCGCATTT 58.343 33.333 5.79 0.00 36.70 2.32
339 340 6.103997 AGATTTTCATTGATGCTCGCATTTT 58.896 32.000 5.79 0.00 36.70 1.82
340 341 6.592607 AGATTTTCATTGATGCTCGCATTTTT 59.407 30.769 5.79 0.00 36.70 1.94
341 342 5.766702 TTTCATTGATGCTCGCATTTTTC 57.233 34.783 5.79 0.00 36.70 2.29
342 343 4.707030 TCATTGATGCTCGCATTTTTCT 57.293 36.364 5.79 0.00 36.70 2.52
343 344 5.063180 TCATTGATGCTCGCATTTTTCTT 57.937 34.783 5.79 0.00 36.70 2.52
344 345 4.860352 TCATTGATGCTCGCATTTTTCTTG 59.140 37.500 5.79 0.23 36.70 3.02
345 346 4.502171 TTGATGCTCGCATTTTTCTTGA 57.498 36.364 5.79 0.00 36.70 3.02
346 347 4.707030 TGATGCTCGCATTTTTCTTGAT 57.293 36.364 5.79 0.00 36.70 2.57
347 348 5.063180 TGATGCTCGCATTTTTCTTGATT 57.937 34.783 5.79 0.00 36.70 2.57
348 349 5.472148 TGATGCTCGCATTTTTCTTGATTT 58.528 33.333 5.79 0.00 36.70 2.17
349 350 6.619744 TGATGCTCGCATTTTTCTTGATTTA 58.380 32.000 5.79 0.00 36.70 1.40
350 351 7.259882 TGATGCTCGCATTTTTCTTGATTTAT 58.740 30.769 5.79 0.00 36.70 1.40
351 352 7.760794 TGATGCTCGCATTTTTCTTGATTTATT 59.239 29.630 5.79 0.00 36.70 1.40
352 353 7.887996 TGCTCGCATTTTTCTTGATTTATTT 57.112 28.000 0.00 0.00 0.00 1.40
353 354 7.952339 TGCTCGCATTTTTCTTGATTTATTTC 58.048 30.769 0.00 0.00 0.00 2.17
354 355 7.598118 TGCTCGCATTTTTCTTGATTTATTTCA 59.402 29.630 0.00 0.00 0.00 2.69
355 356 8.434661 GCTCGCATTTTTCTTGATTTATTTCAA 58.565 29.630 0.00 0.00 34.55 2.69
365 366 9.810545 TTCTTGATTTATTTCAAACTTTTCGGT 57.189 25.926 0.00 0.00 35.31 4.69
366 367 9.243637 TCTTGATTTATTTCAAACTTTTCGGTG 57.756 29.630 0.00 0.00 35.31 4.94
367 368 9.243637 CTTGATTTATTTCAAACTTTTCGGTGA 57.756 29.630 0.00 0.00 35.31 4.02
368 369 9.757227 TTGATTTATTTCAAACTTTTCGGTGAT 57.243 25.926 0.00 0.00 32.82 3.06
369 370 9.190858 TGATTTATTTCAAACTTTTCGGTGATG 57.809 29.630 0.00 0.00 0.00 3.07
370 371 9.191995 GATTTATTTCAAACTTTTCGGTGATGT 57.808 29.630 0.00 0.00 0.00 3.06
371 372 8.934507 TTTATTTCAAACTTTTCGGTGATGTT 57.065 26.923 0.00 0.00 0.00 2.71
372 373 8.934507 TTATTTCAAACTTTTCGGTGATGTTT 57.065 26.923 0.00 0.00 0.00 2.83
375 376 8.934507 TTTCAAACTTTTCGGTGATGTTTATT 57.065 26.923 0.00 0.00 30.89 1.40
376 377 8.568732 TTCAAACTTTTCGGTGATGTTTATTC 57.431 30.769 0.00 0.00 30.89 1.75
377 378 7.708051 TCAAACTTTTCGGTGATGTTTATTCA 58.292 30.769 0.00 0.00 30.89 2.57
378 379 7.860373 TCAAACTTTTCGGTGATGTTTATTCAG 59.140 33.333 0.00 0.00 30.89 3.02
379 380 6.877611 ACTTTTCGGTGATGTTTATTCAGT 57.122 33.333 0.00 0.00 0.00 3.41
380 381 6.899114 ACTTTTCGGTGATGTTTATTCAGTC 58.101 36.000 0.00 0.00 0.00 3.51
381 382 5.524511 TTTCGGTGATGTTTATTCAGTCG 57.475 39.130 0.00 0.00 0.00 4.18
382 383 3.517602 TCGGTGATGTTTATTCAGTCGG 58.482 45.455 0.00 0.00 0.00 4.79
383 384 3.193903 TCGGTGATGTTTATTCAGTCGGA 59.806 43.478 0.00 0.00 0.00 4.55
384 385 3.551890 CGGTGATGTTTATTCAGTCGGAG 59.448 47.826 0.00 0.00 0.00 4.63
385 386 3.871594 GGTGATGTTTATTCAGTCGGAGG 59.128 47.826 0.00 0.00 0.00 4.30
386 387 4.382685 GGTGATGTTTATTCAGTCGGAGGA 60.383 45.833 0.00 0.00 0.00 3.71
387 388 4.806247 GTGATGTTTATTCAGTCGGAGGAG 59.194 45.833 0.00 0.00 0.00 3.69
390 391 3.119602 TGTTTATTCAGTCGGAGGAGACG 60.120 47.826 0.00 0.00 45.26 4.18
394 395 2.438795 AGTCGGAGGAGACGAGGC 60.439 66.667 0.00 0.00 45.26 4.70
395 396 3.878519 GTCGGAGGAGACGAGGCG 61.879 72.222 0.00 0.00 41.50 5.52
405 406 1.299468 GACGAGGCGCCTGTGATAG 60.299 63.158 38.41 19.20 0.00 2.08
410 411 1.144936 GGCGCCTGTGATAGCTTCT 59.855 57.895 22.15 0.00 0.00 2.85
429 444 2.158593 TCTCTATGCCGGCTAAGTCTCT 60.159 50.000 29.70 4.41 0.00 3.10
434 449 0.248702 GCCGGCTAAGTCTCTCGAAG 60.249 60.000 22.15 0.00 0.00 3.79
435 450 1.380524 CCGGCTAAGTCTCTCGAAGA 58.619 55.000 0.00 0.00 0.00 2.87
444 459 7.021196 GCTAAGTCTCTCGAAGATGCTTATAG 58.979 42.308 0.00 0.00 36.11 1.31
447 462 6.530120 AGTCTCTCGAAGATGCTTATAGAGA 58.470 40.000 13.00 13.00 36.11 3.10
455 470 6.375736 CGAAGATGCTTATAGAGATAGGGTGA 59.624 42.308 0.00 0.00 0.00 4.02
456 471 7.415095 CGAAGATGCTTATAGAGATAGGGTGAG 60.415 44.444 0.00 0.00 0.00 3.51
457 472 5.656416 AGATGCTTATAGAGATAGGGTGAGC 59.344 44.000 0.00 0.00 0.00 4.26
458 473 3.759086 TGCTTATAGAGATAGGGTGAGCG 59.241 47.826 0.00 0.00 0.00 5.03
459 474 3.759618 GCTTATAGAGATAGGGTGAGCGT 59.240 47.826 0.00 0.00 0.00 5.07
460 475 4.380023 GCTTATAGAGATAGGGTGAGCGTG 60.380 50.000 0.00 0.00 0.00 5.34
461 476 3.510531 ATAGAGATAGGGTGAGCGTGA 57.489 47.619 0.00 0.00 0.00 4.35
462 477 2.373335 AGAGATAGGGTGAGCGTGAT 57.627 50.000 0.00 0.00 0.00 3.06
463 478 1.959985 AGAGATAGGGTGAGCGTGATG 59.040 52.381 0.00 0.00 0.00 3.07
464 479 0.390860 AGATAGGGTGAGCGTGATGC 59.609 55.000 0.00 0.00 46.98 3.91
477 492 2.802816 GCGTGATGCTTATAGAAGTGGG 59.197 50.000 0.00 0.00 41.73 4.61
478 493 3.393800 CGTGATGCTTATAGAAGTGGGG 58.606 50.000 0.00 0.00 34.90 4.96
479 494 3.181465 CGTGATGCTTATAGAAGTGGGGT 60.181 47.826 0.00 0.00 34.90 4.95
480 495 4.130118 GTGATGCTTATAGAAGTGGGGTG 58.870 47.826 0.00 0.00 34.90 4.61
481 496 4.037222 TGATGCTTATAGAAGTGGGGTGA 58.963 43.478 0.00 0.00 34.90 4.02
482 497 4.101585 TGATGCTTATAGAAGTGGGGTGAG 59.898 45.833 0.00 0.00 34.90 3.51
483 498 2.170607 TGCTTATAGAAGTGGGGTGAGC 59.829 50.000 0.00 0.00 34.90 4.26
488 503 4.988598 AAGTGGGGTGAGCGTGCG 62.989 66.667 0.00 0.00 0.00 5.34
499 514 0.044161 GAGCGTGCGTGCGTTTATAG 60.044 55.000 3.11 0.00 40.67 1.31
501 516 1.634225 CGTGCGTGCGTTTATAGGG 59.366 57.895 0.00 0.00 0.00 3.53
502 517 1.079875 CGTGCGTGCGTTTATAGGGT 61.080 55.000 0.00 0.00 0.00 4.34
503 518 0.372334 GTGCGTGCGTTTATAGGGTG 59.628 55.000 0.00 0.00 0.00 4.61
504 519 0.246910 TGCGTGCGTTTATAGGGTGA 59.753 50.000 0.00 0.00 0.00 4.02
505 520 1.337917 TGCGTGCGTTTATAGGGTGAA 60.338 47.619 0.00 0.00 0.00 3.18
506 521 1.937899 GCGTGCGTTTATAGGGTGAAT 59.062 47.619 0.00 0.00 0.00 2.57
507 522 2.286184 GCGTGCGTTTATAGGGTGAATG 60.286 50.000 0.00 0.00 0.00 2.67
508 523 2.933906 CGTGCGTTTATAGGGTGAATGT 59.066 45.455 0.00 0.00 0.00 2.71
509 524 4.114073 CGTGCGTTTATAGGGTGAATGTA 58.886 43.478 0.00 0.00 0.00 2.29
510 525 4.208460 CGTGCGTTTATAGGGTGAATGTAG 59.792 45.833 0.00 0.00 0.00 2.74
511 526 5.114081 GTGCGTTTATAGGGTGAATGTAGT 58.886 41.667 0.00 0.00 0.00 2.73
512 527 6.275335 GTGCGTTTATAGGGTGAATGTAGTA 58.725 40.000 0.00 0.00 0.00 1.82
513 528 6.927381 GTGCGTTTATAGGGTGAATGTAGTAT 59.073 38.462 0.00 0.00 0.00 2.12
514 529 6.926826 TGCGTTTATAGGGTGAATGTAGTATG 59.073 38.462 0.00 0.00 0.00 2.39
515 530 6.128634 GCGTTTATAGGGTGAATGTAGTATGC 60.129 42.308 0.00 0.00 0.00 3.14
516 531 7.152645 CGTTTATAGGGTGAATGTAGTATGCT 58.847 38.462 0.00 0.00 0.00 3.79
517 532 7.328737 CGTTTATAGGGTGAATGTAGTATGCTC 59.671 40.741 0.00 0.00 0.00 4.26
518 533 3.735237 AGGGTGAATGTAGTATGCTCG 57.265 47.619 0.00 0.00 0.00 5.03
532 547 3.258225 GCTCGTGTATGTGAGCGAT 57.742 52.632 0.00 0.00 47.00 4.58
535 550 2.034507 GCTCGTGTATGTGAGCGATTTC 60.035 50.000 0.00 0.00 47.00 2.17
536 551 2.182014 TCGTGTATGTGAGCGATTTCG 58.818 47.619 0.00 0.00 43.27 3.46
537 552 2.159490 TCGTGTATGTGAGCGATTTCGA 60.159 45.455 3.77 0.00 43.02 3.71
538 553 2.035674 CGTGTATGTGAGCGATTTCGAC 60.036 50.000 3.77 0.00 43.02 4.20
540 555 3.000674 GTGTATGTGAGCGATTTCGACTG 60.001 47.826 3.77 0.00 43.02 3.51
541 556 2.370281 ATGTGAGCGATTTCGACTGT 57.630 45.000 3.77 0.00 43.02 3.55
542 557 3.503827 ATGTGAGCGATTTCGACTGTA 57.496 42.857 3.77 0.00 43.02 2.74
543 558 2.592194 TGTGAGCGATTTCGACTGTAC 58.408 47.619 3.77 3.69 43.02 2.90
545 560 1.542472 TGAGCGATTTCGACTGTACCA 59.458 47.619 3.77 0.00 43.02 3.25
546 561 2.165641 TGAGCGATTTCGACTGTACCAT 59.834 45.455 3.77 0.00 43.02 3.55
547 562 2.535984 GAGCGATTTCGACTGTACCATG 59.464 50.000 3.77 0.00 43.02 3.66
548 563 2.094182 AGCGATTTCGACTGTACCATGT 60.094 45.455 3.77 0.00 43.02 3.21
550 565 3.861113 GCGATTTCGACTGTACCATGTTA 59.139 43.478 3.77 0.00 43.02 2.41
551 566 4.327898 GCGATTTCGACTGTACCATGTTAA 59.672 41.667 3.77 0.00 43.02 2.01
588 603 1.295792 TAACGAGGCGCATCCAAATC 58.704 50.000 17.46 0.00 37.29 2.17
589 604 1.376609 AACGAGGCGCATCCAAATCC 61.377 55.000 17.46 0.00 37.29 3.01
590 605 1.819208 CGAGGCGCATCCAAATCCA 60.819 57.895 17.46 0.00 37.29 3.41
591 606 1.375853 CGAGGCGCATCCAAATCCAA 61.376 55.000 17.46 0.00 37.29 3.53
592 607 0.817013 GAGGCGCATCCAAATCCAAA 59.183 50.000 11.78 0.00 37.29 3.28
593 608 1.410153 GAGGCGCATCCAAATCCAAAT 59.590 47.619 11.78 0.00 37.29 2.32
600 615 6.146021 GGCGCATCCAAATCCAAATTATTAAG 59.854 38.462 10.83 0.00 34.01 1.85
730 745 2.858839 CATGTGTAGCAATGCACAGTG 58.141 47.619 8.35 8.03 46.83 3.66
868 884 4.203076 AGCGTCGACCGGCATACC 62.203 66.667 16.22 0.00 36.94 2.73
883 899 1.609555 CATACCGACCCTGCTCTACTC 59.390 57.143 0.00 0.00 0.00 2.59
898 914 3.611970 TCTACTCTACTGCACCTCTGTC 58.388 50.000 0.00 0.00 0.00 3.51
1008 1030 2.109126 GTTGCCGGTGATGCTCCTC 61.109 63.158 1.90 0.00 0.00 3.71
1013 1035 2.105128 GGTGATGCTCCTCGTCGG 59.895 66.667 0.00 0.00 33.35 4.79
1014 1036 2.711922 GGTGATGCTCCTCGTCGGT 61.712 63.158 0.00 0.00 33.35 4.69
1015 1037 1.517257 GTGATGCTCCTCGTCGGTG 60.517 63.158 0.00 0.00 33.35 4.94
1019 1041 4.148825 GCTCCTCGTCGGTGCCAT 62.149 66.667 8.63 0.00 44.59 4.40
1020 1042 2.202797 CTCCTCGTCGGTGCCATG 60.203 66.667 0.00 0.00 0.00 3.66
1021 1043 3.723235 CTCCTCGTCGGTGCCATGG 62.723 68.421 7.63 7.63 0.00 3.66
1118 1140 0.105039 CTGAGGATGGGGTTCTACGC 59.895 60.000 0.00 0.00 0.00 4.42
1275 1310 1.487452 CGACCATTCCATACGTGCGG 61.487 60.000 0.00 0.00 0.00 5.69
1278 1313 0.746563 CCATTCCATACGTGCGGGTT 60.747 55.000 0.00 0.00 0.00 4.11
1283 1318 0.173935 CCATACGTGCGGGTTACTCA 59.826 55.000 0.00 0.00 0.00 3.41
1285 1320 1.657094 CATACGTGCGGGTTACTCAAC 59.343 52.381 0.00 0.00 0.00 3.18
1315 1366 1.908889 GCACGCAAATTTACTTACCGC 59.091 47.619 0.00 0.00 0.00 5.68
1321 1372 1.001624 AATTTACTTACCGCCGCGTC 58.998 50.000 12.58 0.00 0.00 5.19
1322 1373 1.141591 ATTTACTTACCGCCGCGTCG 61.142 55.000 12.58 0.90 0.00 5.12
1541 1611 3.496131 CCATTGTACGCCGCGCTT 61.496 61.111 13.88 0.00 0.00 4.68
1584 1659 1.589196 GTCATCTGTCCGTAGCCGC 60.589 63.158 0.00 0.00 0.00 6.53
1595 1670 3.299977 TAGCCGCCACTGACGTGT 61.300 61.111 0.00 0.00 39.55 4.49
1779 1854 1.214062 CTCGTCTGGCTGTCAGGTC 59.786 63.158 9.73 2.64 43.53 3.85
1783 1858 2.262915 CTGGCTGTCAGGTCCGTC 59.737 66.667 0.16 0.00 39.76 4.79
1801 1876 1.553248 GTCCCCAGCATACACACACTA 59.447 52.381 0.00 0.00 0.00 2.74
1802 1877 1.553248 TCCCCAGCATACACACACTAC 59.447 52.381 0.00 0.00 0.00 2.73
1803 1878 1.277842 CCCCAGCATACACACACTACA 59.722 52.381 0.00 0.00 0.00 2.74
1804 1879 2.346803 CCCAGCATACACACACTACAC 58.653 52.381 0.00 0.00 0.00 2.90
1805 1880 2.346803 CCAGCATACACACACTACACC 58.653 52.381 0.00 0.00 0.00 4.16
1827 1902 4.581824 CCAGCTTAATAATCACATGCCACT 59.418 41.667 0.00 0.00 0.00 4.00
1874 1949 4.025145 TGCATGTAGTACGTAGTCTGATCG 60.025 45.833 6.10 0.00 43.93 3.69
1877 1952 3.308053 TGTAGTACGTAGTCTGATCGCAC 59.692 47.826 6.10 0.00 43.93 5.34
1919 1994 6.808008 TCTGCTAAAAAGATTGAACAGAGG 57.192 37.500 0.00 0.00 0.00 3.69
1924 1999 6.144563 GCTAAAAAGATTGAACAGAGGCAAAC 59.855 38.462 0.00 0.00 0.00 2.93
1946 2021 3.561725 CGACCCCAAATTATCTGAGAAGC 59.438 47.826 0.00 0.00 0.00 3.86
1964 2039 2.126189 GGTAGCCACCGACACGAC 60.126 66.667 0.00 0.00 34.36 4.34
2023 2098 2.505557 GGCATCGCAAAGCAGCAC 60.506 61.111 0.00 0.00 0.00 4.40
2099 2174 3.247648 CACCAACAACCGTAGTTTCTGAG 59.752 47.826 0.00 0.00 32.45 3.35
2206 2321 0.689055 TGGAGTCACTGATGCTTGCT 59.311 50.000 0.00 0.00 0.00 3.91
2208 2323 2.157738 GGAGTCACTGATGCTTGCTTT 58.842 47.619 0.00 0.00 0.00 3.51
2209 2324 3.244526 TGGAGTCACTGATGCTTGCTTTA 60.245 43.478 0.00 0.00 0.00 1.85
2340 2455 8.980832 ATCCTGTCTCCTATTCCATACTTTAT 57.019 34.615 0.00 0.00 0.00 1.40
2349 2464 9.959721 TCCTATTCCATACTTTATCATTTAGCC 57.040 33.333 0.00 0.00 0.00 3.93
2350 2465 9.178758 CCTATTCCATACTTTATCATTTAGCCC 57.821 37.037 0.00 0.00 0.00 5.19
2351 2466 9.178758 CTATTCCATACTTTATCATTTAGCCCC 57.821 37.037 0.00 0.00 0.00 5.80
2352 2467 6.523035 TCCATACTTTATCATTTAGCCCCA 57.477 37.500 0.00 0.00 0.00 4.96
2353 2468 6.916909 TCCATACTTTATCATTTAGCCCCAA 58.083 36.000 0.00 0.00 0.00 4.12
2354 2469 6.775629 TCCATACTTTATCATTTAGCCCCAAC 59.224 38.462 0.00 0.00 0.00 3.77
2356 2471 4.941713 ACTTTATCATTTAGCCCCAACCA 58.058 39.130 0.00 0.00 0.00 3.67
2357 2472 5.528337 ACTTTATCATTTAGCCCCAACCAT 58.472 37.500 0.00 0.00 0.00 3.55
2358 2473 5.598417 ACTTTATCATTTAGCCCCAACCATC 59.402 40.000 0.00 0.00 0.00 3.51
2359 2474 2.051334 TCATTTAGCCCCAACCATCG 57.949 50.000 0.00 0.00 0.00 3.84
2360 2475 1.562008 TCATTTAGCCCCAACCATCGA 59.438 47.619 0.00 0.00 0.00 3.59
2361 2476 1.676006 CATTTAGCCCCAACCATCGAC 59.324 52.381 0.00 0.00 0.00 4.20
2362 2477 0.034863 TTTAGCCCCAACCATCGACC 60.035 55.000 0.00 0.00 0.00 4.79
2363 2478 0.912487 TTAGCCCCAACCATCGACCT 60.912 55.000 0.00 0.00 0.00 3.85
2364 2479 0.031917 TAGCCCCAACCATCGACCTA 60.032 55.000 0.00 0.00 0.00 3.08
2365 2480 1.146263 GCCCCAACCATCGACCTAG 59.854 63.158 0.00 0.00 0.00 3.02
2366 2481 1.335132 GCCCCAACCATCGACCTAGA 61.335 60.000 0.00 0.00 0.00 2.43
2367 2482 0.464452 CCCCAACCATCGACCTAGAC 59.536 60.000 0.00 0.00 0.00 2.59
2368 2483 1.486211 CCCAACCATCGACCTAGACT 58.514 55.000 0.00 0.00 0.00 3.24
2369 2484 1.831736 CCCAACCATCGACCTAGACTT 59.168 52.381 0.00 0.00 0.00 3.01
2370 2485 2.236395 CCCAACCATCGACCTAGACTTT 59.764 50.000 0.00 0.00 0.00 2.66
2371 2486 3.307480 CCCAACCATCGACCTAGACTTTT 60.307 47.826 0.00 0.00 0.00 2.27
2372 2487 4.324267 CCAACCATCGACCTAGACTTTTT 58.676 43.478 0.00 0.00 0.00 1.94
2393 2508 4.360951 TTTCCGAACCATGTAGGAAACT 57.639 40.909 13.58 0.00 44.81 2.66
2394 2509 3.328382 TCCGAACCATGTAGGAAACTG 57.672 47.619 0.00 0.00 43.88 3.16
2395 2510 1.737793 CCGAACCATGTAGGAAACTGC 59.262 52.381 0.00 0.00 43.88 4.40
2406 2521 0.042448 GGAAACTGCACGTGTCGAAC 60.042 55.000 18.38 0.00 30.02 3.95
2421 2536 5.632347 CGTGTCGAACTAGACTTTACCAATT 59.368 40.000 0.00 0.00 41.47 2.32
2422 2537 6.803320 CGTGTCGAACTAGACTTTACCAATTA 59.197 38.462 0.00 0.00 41.47 1.40
2423 2538 7.201299 CGTGTCGAACTAGACTTTACCAATTAC 60.201 40.741 0.00 0.00 41.47 1.89
2424 2539 7.062722 GTGTCGAACTAGACTTTACCAATTACC 59.937 40.741 0.00 0.00 41.47 2.85
2425 2540 7.092716 GTCGAACTAGACTTTACCAATTACCA 58.907 38.462 0.00 0.00 38.09 3.25
2426 2541 7.599998 GTCGAACTAGACTTTACCAATTACCAA 59.400 37.037 0.00 0.00 38.09 3.67
2427 2542 8.316214 TCGAACTAGACTTTACCAATTACCAAT 58.684 33.333 0.00 0.00 0.00 3.16
2428 2543 8.388103 CGAACTAGACTTTACCAATTACCAATG 58.612 37.037 0.00 0.00 0.00 2.82
2429 2544 9.444600 GAACTAGACTTTACCAATTACCAATGA 57.555 33.333 0.00 0.00 0.00 2.57
2430 2545 9.975218 AACTAGACTTTACCAATTACCAATGAT 57.025 29.630 0.00 0.00 0.00 2.45
2431 2546 9.396022 ACTAGACTTTACCAATTACCAATGATG 57.604 33.333 0.00 0.00 0.00 3.07
2432 2547 9.396022 CTAGACTTTACCAATTACCAATGATGT 57.604 33.333 0.00 0.00 0.00 3.06
2465 2580 5.301805 TCCAACAGAAACCATCTCTTTTTCC 59.698 40.000 0.00 0.00 35.73 3.13
2467 2582 4.803452 ACAGAAACCATCTCTTTTTCCCA 58.197 39.130 0.00 0.00 35.73 4.37
2529 2645 7.172342 TGTTACAATATAAGCCCACTGAAGTT 58.828 34.615 0.00 0.00 0.00 2.66
2531 2647 5.815581 ACAATATAAGCCCACTGAAGTTCA 58.184 37.500 5.25 5.25 0.00 3.18
2544 2660 5.748872 CTGAAGTTCAGTTTAGCGAGTAC 57.251 43.478 22.48 0.00 39.58 2.73
2558 2674 7.499321 TTAGCGAGTACATGAAAAGGAAAAA 57.501 32.000 0.00 0.00 0.00 1.94
2561 2677 7.433680 AGCGAGTACATGAAAAGGAAAAATTT 58.566 30.769 0.00 0.00 0.00 1.82
2562 2678 8.573035 AGCGAGTACATGAAAAGGAAAAATTTA 58.427 29.630 0.00 0.00 0.00 1.40
2563 2679 8.635983 GCGAGTACATGAAAAGGAAAAATTTAC 58.364 33.333 0.00 0.00 0.00 2.01
2564 2680 9.672086 CGAGTACATGAAAAGGAAAAATTTACA 57.328 29.630 0.00 0.00 0.00 2.41
2571 2687 9.764363 ATGAAAAGGAAAAATTTACAGAGGAAC 57.236 29.630 0.00 0.00 0.00 3.62
2574 2690 9.599866 AAAAGGAAAAATTTACAGAGGAACAAG 57.400 29.630 0.00 0.00 0.00 3.16
2576 2692 6.323739 AGGAAAAATTTACAGAGGAACAAGCA 59.676 34.615 0.00 0.00 0.00 3.91
2577 2693 6.420903 GGAAAAATTTACAGAGGAACAAGCAC 59.579 38.462 0.00 0.00 0.00 4.40
2579 2695 5.695851 AATTTACAGAGGAACAAGCACTG 57.304 39.130 0.00 0.00 35.14 3.66
2613 2737 1.135774 TCGAACGTGTCTCTGAATCGG 60.136 52.381 0.00 0.00 0.00 4.18
2627 2751 3.628646 ATCGGGCCTGAGGTGCAAC 62.629 63.158 21.28 0.00 0.00 4.17
2698 2822 1.823976 GCCTCTACAGCTACCCCAC 59.176 63.158 0.00 0.00 0.00 4.61
3105 7901 0.538057 ACTGTTGGTGGATGCTGTGG 60.538 55.000 0.00 0.00 0.00 4.17
3198 7997 5.971763 AGAATAACTGAGTCTGCAGGTTAG 58.028 41.667 15.13 10.26 40.20 2.34
3200 7999 3.393089 AACTGAGTCTGCAGGTTAGTG 57.607 47.619 15.13 3.09 40.20 2.74
3201 8000 2.320781 ACTGAGTCTGCAGGTTAGTGT 58.679 47.619 15.13 3.74 40.20 3.55
3202 8001 2.036475 ACTGAGTCTGCAGGTTAGTGTG 59.964 50.000 15.13 0.00 40.20 3.82
3203 8002 2.297315 CTGAGTCTGCAGGTTAGTGTGA 59.703 50.000 15.13 0.00 32.26 3.58
3205 8004 3.060602 GAGTCTGCAGGTTAGTGTGAAC 58.939 50.000 15.13 0.00 0.00 3.18
3206 8005 2.434336 AGTCTGCAGGTTAGTGTGAACA 59.566 45.455 15.13 0.00 0.00 3.18
3215 8034 3.363970 GGTTAGTGTGAACAATGCACGAG 60.364 47.826 0.00 0.00 39.07 4.18
3216 8035 1.229428 AGTGTGAACAATGCACGAGG 58.771 50.000 0.00 0.00 39.07 4.63
3219 8038 2.096417 GTGTGAACAATGCACGAGGTAC 60.096 50.000 0.00 0.00 39.07 3.34
3230 8049 3.006430 TGCACGAGGTACAAGATTGAAGA 59.994 43.478 0.00 0.00 0.00 2.87
3235 8054 6.253727 CACGAGGTACAAGATTGAAGATGTAC 59.746 42.308 0.00 6.41 44.56 2.90
3241 8060 9.988815 GGTACAAGATTGAAGATGTACTCATAT 57.011 33.333 12.86 0.00 44.64 1.78
3249 8077 7.203255 TGAAGATGTACTCATATGTACTCGG 57.797 40.000 1.90 0.00 42.22 4.63
3252 8080 7.441890 AGATGTACTCATATGTACTCGGAAG 57.558 40.000 1.90 0.00 42.22 3.46
3266 8094 9.682465 ATGTACTCGGAAGATATATAAGTAGCA 57.318 33.333 0.00 0.00 40.84 3.49
3289 8117 6.516355 GCAATGACGAAACATATATAACTGCG 59.484 38.462 0.00 0.00 0.00 5.18
3303 8131 5.940192 ATAACTGCGACTCACAAAATTCA 57.060 34.783 0.00 0.00 0.00 2.57
3308 8136 3.742882 TGCGACTCACAAAATTCAGAGAG 59.257 43.478 0.00 0.00 32.59 3.20
3310 8138 4.923871 GCGACTCACAAAATTCAGAGAGTA 59.076 41.667 9.16 0.00 36.14 2.59
3312 8140 6.091441 GCGACTCACAAAATTCAGAGAGTAAT 59.909 38.462 9.16 0.00 36.14 1.89
3339 8167 9.959721 ACCTATTACAAGTGTATGAAATTGTCT 57.040 29.630 0.00 0.00 37.15 3.41
3344 8172 7.984422 ACAAGTGTATGAAATTGTCTCATCA 57.016 32.000 0.00 0.00 35.21 3.07
3345 8173 8.394971 ACAAGTGTATGAAATTGTCTCATCAA 57.605 30.769 0.00 0.00 35.21 2.57
3347 8175 9.850628 CAAGTGTATGAAATTGTCTCATCAAAT 57.149 29.630 0.00 0.00 35.21 2.32
3368 8200 8.682710 TCAAATAGACAACAAATATAAGCCACC 58.317 33.333 0.00 0.00 0.00 4.61
3373 8205 4.949856 ACAACAAATATAAGCCACCTCTGG 59.050 41.667 0.00 0.00 41.13 3.86
3377 8209 4.696479 AATATAAGCCACCTCTGGTCAG 57.304 45.455 0.00 0.00 40.17 3.51
3382 8214 0.105778 GCCACCTCTGGTCAGATAGC 59.894 60.000 0.75 0.00 40.17 2.97
3386 8218 2.499289 CACCTCTGGTCAGATAGCAACT 59.501 50.000 0.75 0.00 36.76 3.16
3396 8228 6.098838 TGGTCAGATAGCAACTGATCATTACT 59.901 38.462 13.84 0.00 46.26 2.24
3398 8230 8.310382 GGTCAGATAGCAACTGATCATTACTAT 58.690 37.037 11.35 2.24 44.41 2.12
3406 8238 9.672673 AGCAACTGATCATTACTATTACAACTT 57.327 29.630 0.00 0.00 0.00 2.66
3444 8279 7.382110 AGCAGAGTCATGGACAATACATATAC 58.618 38.462 0.00 0.00 34.60 1.47
3455 8290 6.203915 GGACAATACATATACGTCCATTGCAA 59.796 38.462 0.00 0.00 44.55 4.08
3481 8316 2.555325 TGCAAGCATGAGGAAACTTCAG 59.445 45.455 0.00 0.00 44.43 3.02
3484 8319 3.795688 AGCATGAGGAAACTTCAGGAA 57.204 42.857 0.00 0.00 44.43 3.36
3485 8320 4.104383 AGCATGAGGAAACTTCAGGAAA 57.896 40.909 0.00 0.00 44.43 3.13
3489 8324 4.229304 TGAGGAAACTTCAGGAAACACA 57.771 40.909 0.00 0.00 44.43 3.72
3490 8325 4.594970 TGAGGAAACTTCAGGAAACACAA 58.405 39.130 0.00 0.00 44.43 3.33
3492 8327 5.067674 TGAGGAAACTTCAGGAAACACAATG 59.932 40.000 0.00 0.00 44.43 2.82
3493 8328 5.200483 AGGAAACTTCAGGAAACACAATGA 58.800 37.500 0.00 0.00 37.44 2.57
3494 8329 5.300286 AGGAAACTTCAGGAAACACAATGAG 59.700 40.000 0.00 0.00 37.44 2.90
3518 8353 0.324943 TAGGACAAAGCAGAGTGCCC 59.675 55.000 0.00 0.00 46.52 5.36
3523 8358 1.421646 ACAAAGCAGAGTGCCCTACTT 59.578 47.619 0.00 0.00 46.52 2.24
3644 8479 4.345547 ACACCATACCCAAAAACCGAAAAT 59.654 37.500 0.00 0.00 0.00 1.82
3669 8504 4.991153 TCCAGCAATCACTGAGTAGTAG 57.009 45.455 0.00 0.00 40.25 2.57
3807 8642 3.245264 TGCTATAGATCGATGGGTCCTCA 60.245 47.826 0.54 0.00 0.00 3.86
3930 8765 6.831664 ATAGGACCAGACAGTTTATTCCAT 57.168 37.500 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.869272 CTCCTGCAATCGCCGCAC 61.869 66.667 0.00 0.00 37.32 5.34
22 23 3.899981 AACTCCTGCAATCGCCGCA 62.900 57.895 0.00 0.00 37.32 5.69
28 29 3.243002 GCTAAGCATCAACTCCTGCAATC 60.243 47.826 0.00 0.00 40.88 2.67
54 55 8.394971 TCAAATTATTCAAGATCACACACACT 57.605 30.769 0.00 0.00 0.00 3.55
58 59 7.451501 TGCTCAAATTATTCAAGATCACACA 57.548 32.000 0.00 0.00 0.00 3.72
150 151 1.833606 TGGAACAAACCTCGGAGCA 59.166 52.632 0.00 0.00 31.92 4.26
168 169 4.089839 CCTCCATAGCAGGGGGTT 57.910 61.111 0.79 0.00 44.91 4.11
171 172 1.150081 CTTGCCTCCATAGCAGGGG 59.850 63.158 0.00 0.00 42.17 4.79
172 173 0.257039 AACTTGCCTCCATAGCAGGG 59.743 55.000 0.00 0.00 41.30 4.45
173 174 1.673168 GAACTTGCCTCCATAGCAGG 58.327 55.000 0.00 0.00 42.17 4.85
174 175 1.134699 TCGAACTTGCCTCCATAGCAG 60.135 52.381 0.00 0.00 42.17 4.24
175 176 0.901827 TCGAACTTGCCTCCATAGCA 59.098 50.000 0.00 0.00 38.81 3.49
176 177 2.024176 TTCGAACTTGCCTCCATAGC 57.976 50.000 0.00 0.00 0.00 2.97
182 183 3.253432 ACAAGGAAATTCGAACTTGCCTC 59.747 43.478 20.19 0.00 42.97 4.70
220 221 9.062524 GCCACATTATCATTACTGTATGGTTTA 57.937 33.333 0.00 0.00 0.00 2.01
224 225 5.390885 GCGCCACATTATCATTACTGTATGG 60.391 44.000 0.00 0.00 0.00 2.74
227 228 4.698575 TGCGCCACATTATCATTACTGTA 58.301 39.130 4.18 0.00 0.00 2.74
231 232 4.041723 GGTTTGCGCCACATTATCATTAC 58.958 43.478 4.18 0.00 0.00 1.89
232 233 3.696548 TGGTTTGCGCCACATTATCATTA 59.303 39.130 4.18 0.00 32.81 1.90
233 234 2.495270 TGGTTTGCGCCACATTATCATT 59.505 40.909 4.18 0.00 32.81 2.57
234 235 2.098614 TGGTTTGCGCCACATTATCAT 58.901 42.857 4.18 0.00 32.81 2.45
235 236 1.539157 TGGTTTGCGCCACATTATCA 58.461 45.000 4.18 0.00 32.81 2.15
236 237 2.645730 TTGGTTTGCGCCACATTATC 57.354 45.000 4.18 0.00 38.42 1.75
237 238 2.760092 AGATTGGTTTGCGCCACATTAT 59.240 40.909 4.18 0.00 38.42 1.28
238 239 2.166829 AGATTGGTTTGCGCCACATTA 58.833 42.857 4.18 0.00 38.42 1.90
239 240 0.968405 AGATTGGTTTGCGCCACATT 59.032 45.000 4.18 0.00 38.42 2.71
240 241 1.832883 TAGATTGGTTTGCGCCACAT 58.167 45.000 4.18 0.00 38.42 3.21
241 242 1.832883 ATAGATTGGTTTGCGCCACA 58.167 45.000 4.18 0.00 38.42 4.17
242 243 2.943033 ACTATAGATTGGTTTGCGCCAC 59.057 45.455 4.18 0.60 38.42 5.01
243 244 3.202906 GACTATAGATTGGTTTGCGCCA 58.797 45.455 4.18 0.00 36.62 5.69
244 245 2.221055 CGACTATAGATTGGTTTGCGCC 59.779 50.000 4.18 0.00 0.00 6.53
245 246 2.864343 ACGACTATAGATTGGTTTGCGC 59.136 45.455 6.78 0.00 0.00 6.09
246 247 4.145928 CGTACGACTATAGATTGGTTTGCG 59.854 45.833 10.44 0.00 0.00 4.85
247 248 5.276270 TCGTACGACTATAGATTGGTTTGC 58.724 41.667 15.28 0.00 0.00 3.68
249 250 8.295288 CCTAATCGTACGACTATAGATTGGTTT 58.705 37.037 22.14 8.55 34.02 3.27
257 258 8.196771 ACTATCCTCCTAATCGTACGACTATAG 58.803 40.741 22.14 20.63 0.00 1.31
259 260 6.817641 CACTATCCTCCTAATCGTACGACTAT 59.182 42.308 22.14 12.42 0.00 2.12
261 262 4.996122 CACTATCCTCCTAATCGTACGACT 59.004 45.833 22.14 13.22 0.00 4.18
263 264 4.202398 ACCACTATCCTCCTAATCGTACGA 60.202 45.833 21.93 21.93 0.00 3.43
264 265 4.070716 ACCACTATCCTCCTAATCGTACG 58.929 47.826 9.53 9.53 0.00 3.67
265 266 6.883217 TGATACCACTATCCTCCTAATCGTAC 59.117 42.308 0.00 0.00 0.00 3.67
266 267 6.883217 GTGATACCACTATCCTCCTAATCGTA 59.117 42.308 0.00 0.00 40.10 3.43
268 269 5.125739 GGTGATACCACTATCCTCCTAATCG 59.874 48.000 0.00 0.00 42.77 3.34
270 271 5.977533 TGGTGATACCACTATCCTCCTAAT 58.022 41.667 0.00 0.00 44.79 1.73
280 281 4.193240 TGATAGGCTGGTGATACCACTA 57.807 45.455 0.00 0.00 44.79 2.74
282 283 3.388024 TCTTGATAGGCTGGTGATACCAC 59.612 47.826 0.00 0.00 44.79 4.16
285 286 5.858381 TGAATCTTGATAGGCTGGTGATAC 58.142 41.667 0.00 0.00 0.00 2.24
289 290 4.521146 ACTTGAATCTTGATAGGCTGGTG 58.479 43.478 0.00 0.00 0.00 4.17
290 291 4.472833 AGACTTGAATCTTGATAGGCTGGT 59.527 41.667 0.00 0.00 0.00 4.00
304 305 9.798994 GCATCAATGAAAATCTAAGACTTGAAT 57.201 29.630 0.00 0.00 0.00 2.57
305 306 9.017509 AGCATCAATGAAAATCTAAGACTTGAA 57.982 29.630 0.00 0.00 0.00 2.69
306 307 8.571461 AGCATCAATGAAAATCTAAGACTTGA 57.429 30.769 0.00 0.00 0.00 3.02
307 308 7.639072 CGAGCATCAATGAAAATCTAAGACTTG 59.361 37.037 0.00 0.00 33.17 3.16
308 309 7.678218 GCGAGCATCAATGAAAATCTAAGACTT 60.678 37.037 0.00 0.00 33.17 3.01
311 312 5.585844 TGCGAGCATCAATGAAAATCTAAGA 59.414 36.000 0.00 0.00 33.17 2.10
312 313 5.813717 TGCGAGCATCAATGAAAATCTAAG 58.186 37.500 0.00 0.00 33.17 2.18
313 314 5.816449 TGCGAGCATCAATGAAAATCTAA 57.184 34.783 0.00 0.00 33.17 2.10
314 315 6.381481 AATGCGAGCATCAATGAAAATCTA 57.619 33.333 11.26 0.00 35.31 1.98
315 316 4.913335 ATGCGAGCATCAATGAAAATCT 57.087 36.364 4.52 0.00 33.17 2.40
316 317 5.961395 AAATGCGAGCATCAATGAAAATC 57.039 34.783 11.26 0.00 35.31 2.17
317 318 6.592607 AGAAAAATGCGAGCATCAATGAAAAT 59.407 30.769 11.26 0.00 35.31 1.82
318 319 5.927689 AGAAAAATGCGAGCATCAATGAAAA 59.072 32.000 11.26 0.00 35.31 2.29
321 322 4.707030 AGAAAAATGCGAGCATCAATGA 57.293 36.364 11.26 0.00 35.31 2.57
322 323 4.860352 TCAAGAAAAATGCGAGCATCAATG 59.140 37.500 11.26 5.69 35.31 2.82
323 324 5.063180 TCAAGAAAAATGCGAGCATCAAT 57.937 34.783 11.26 0.42 35.31 2.57
326 327 7.689953 ATAAATCAAGAAAAATGCGAGCATC 57.310 32.000 11.26 0.00 35.31 3.91
327 328 8.483307 AAATAAATCAAGAAAAATGCGAGCAT 57.517 26.923 4.52 4.52 38.46 3.79
328 329 7.598118 TGAAATAAATCAAGAAAAATGCGAGCA 59.402 29.630 0.00 0.00 0.00 4.26
329 330 7.952339 TGAAATAAATCAAGAAAAATGCGAGC 58.048 30.769 0.00 0.00 0.00 5.03
339 340 9.810545 ACCGAAAAGTTTGAAATAAATCAAGAA 57.189 25.926 0.00 0.00 40.21 2.52
340 341 9.243637 CACCGAAAAGTTTGAAATAAATCAAGA 57.756 29.630 0.00 0.00 40.21 3.02
341 342 9.243637 TCACCGAAAAGTTTGAAATAAATCAAG 57.756 29.630 0.00 0.00 40.21 3.02
342 343 9.757227 ATCACCGAAAAGTTTGAAATAAATCAA 57.243 25.926 0.00 0.00 37.53 2.57
343 344 9.190858 CATCACCGAAAAGTTTGAAATAAATCA 57.809 29.630 0.00 0.00 0.00 2.57
344 345 9.191995 ACATCACCGAAAAGTTTGAAATAAATC 57.808 29.630 0.00 0.00 0.00 2.17
345 346 9.541143 AACATCACCGAAAAGTTTGAAATAAAT 57.459 25.926 0.00 0.00 0.00 1.40
346 347 8.934507 AACATCACCGAAAAGTTTGAAATAAA 57.065 26.923 0.00 0.00 0.00 1.40
347 348 8.934507 AAACATCACCGAAAAGTTTGAAATAA 57.065 26.923 0.00 0.00 31.81 1.40
349 350 9.541143 AATAAACATCACCGAAAAGTTTGAAAT 57.459 25.926 0.00 0.00 34.58 2.17
350 351 8.934507 AATAAACATCACCGAAAAGTTTGAAA 57.065 26.923 0.00 0.00 34.58 2.69
351 352 8.191446 TGAATAAACATCACCGAAAAGTTTGAA 58.809 29.630 0.00 0.00 34.58 2.69
352 353 7.708051 TGAATAAACATCACCGAAAAGTTTGA 58.292 30.769 0.00 0.00 34.58 2.69
353 354 7.647715 ACTGAATAAACATCACCGAAAAGTTTG 59.352 33.333 0.00 0.00 34.58 2.93
354 355 7.712797 ACTGAATAAACATCACCGAAAAGTTT 58.287 30.769 0.00 0.00 36.49 2.66
355 356 7.272037 ACTGAATAAACATCACCGAAAAGTT 57.728 32.000 0.00 0.00 0.00 2.66
356 357 6.347402 CGACTGAATAAACATCACCGAAAAGT 60.347 38.462 0.00 0.00 0.00 2.66
357 358 6.015504 CGACTGAATAAACATCACCGAAAAG 58.984 40.000 0.00 0.00 0.00 2.27
358 359 5.106869 CCGACTGAATAAACATCACCGAAAA 60.107 40.000 0.00 0.00 0.00 2.29
359 360 4.390603 CCGACTGAATAAACATCACCGAAA 59.609 41.667 0.00 0.00 0.00 3.46
360 361 3.930229 CCGACTGAATAAACATCACCGAA 59.070 43.478 0.00 0.00 0.00 4.30
361 362 3.193903 TCCGACTGAATAAACATCACCGA 59.806 43.478 0.00 0.00 0.00 4.69
362 363 3.517602 TCCGACTGAATAAACATCACCG 58.482 45.455 0.00 0.00 0.00 4.94
363 364 3.871594 CCTCCGACTGAATAAACATCACC 59.128 47.826 0.00 0.00 0.00 4.02
364 365 4.755411 TCCTCCGACTGAATAAACATCAC 58.245 43.478 0.00 0.00 0.00 3.06
365 366 4.709886 TCTCCTCCGACTGAATAAACATCA 59.290 41.667 0.00 0.00 0.00 3.07
366 367 5.044558 GTCTCCTCCGACTGAATAAACATC 58.955 45.833 0.00 0.00 0.00 3.06
367 368 4.440250 CGTCTCCTCCGACTGAATAAACAT 60.440 45.833 0.00 0.00 0.00 2.71
368 369 3.119602 CGTCTCCTCCGACTGAATAAACA 60.120 47.826 0.00 0.00 0.00 2.83
369 370 3.128242 TCGTCTCCTCCGACTGAATAAAC 59.872 47.826 0.00 0.00 0.00 2.01
370 371 3.349927 TCGTCTCCTCCGACTGAATAAA 58.650 45.455 0.00 0.00 0.00 1.40
371 372 2.943690 CTCGTCTCCTCCGACTGAATAA 59.056 50.000 0.00 0.00 0.00 1.40
372 373 2.562635 CTCGTCTCCTCCGACTGAATA 58.437 52.381 0.00 0.00 0.00 1.75
373 374 1.384525 CTCGTCTCCTCCGACTGAAT 58.615 55.000 0.00 0.00 0.00 2.57
374 375 0.677098 CCTCGTCTCCTCCGACTGAA 60.677 60.000 0.00 0.00 0.00 3.02
375 376 1.078356 CCTCGTCTCCTCCGACTGA 60.078 63.158 0.00 0.00 0.00 3.41
376 377 2.766400 GCCTCGTCTCCTCCGACTG 61.766 68.421 0.00 0.00 0.00 3.51
377 378 2.438795 GCCTCGTCTCCTCCGACT 60.439 66.667 0.00 0.00 0.00 4.18
378 379 3.878519 CGCCTCGTCTCCTCCGAC 61.879 72.222 0.00 0.00 0.00 4.79
382 383 4.200283 CAGGCGCCTCGTCTCCTC 62.200 72.222 30.29 0.00 40.90 3.71
384 385 4.803426 CACAGGCGCCTCGTCTCC 62.803 72.222 30.29 0.00 40.90 3.71
385 386 1.725557 TATCACAGGCGCCTCGTCTC 61.726 60.000 30.29 0.00 40.90 3.36
386 387 1.729470 CTATCACAGGCGCCTCGTCT 61.729 60.000 30.29 18.23 44.88 4.18
387 388 1.299468 CTATCACAGGCGCCTCGTC 60.299 63.158 30.29 0.00 0.00 4.20
390 391 0.878086 GAAGCTATCACAGGCGCCTC 60.878 60.000 30.29 14.15 0.00 4.70
394 395 3.573598 CATAGAGAAGCTATCACAGGCG 58.426 50.000 0.00 0.00 37.72 5.52
395 396 3.324993 GCATAGAGAAGCTATCACAGGC 58.675 50.000 0.00 0.00 37.72 4.85
396 397 3.613671 CGGCATAGAGAAGCTATCACAGG 60.614 52.174 0.00 0.00 37.72 4.00
405 406 1.069358 ACTTAGCCGGCATAGAGAAGC 59.931 52.381 31.54 0.00 0.00 3.86
410 411 2.231529 GAGAGACTTAGCCGGCATAGA 58.768 52.381 31.54 7.86 0.00 1.98
429 444 6.375736 CACCCTATCTCTATAAGCATCTTCGA 59.624 42.308 0.00 0.00 0.00 3.71
434 449 5.449862 CGCTCACCCTATCTCTATAAGCATC 60.450 48.000 0.00 0.00 0.00 3.91
435 450 4.400884 CGCTCACCCTATCTCTATAAGCAT 59.599 45.833 0.00 0.00 0.00 3.79
444 459 1.604185 GCATCACGCTCACCCTATCTC 60.604 57.143 0.00 0.00 37.77 2.75
456 471 2.802816 CCCACTTCTATAAGCATCACGC 59.197 50.000 0.00 0.00 42.91 5.34
457 472 3.181465 ACCCCACTTCTATAAGCATCACG 60.181 47.826 0.00 0.00 36.05 4.35
458 473 4.130118 CACCCCACTTCTATAAGCATCAC 58.870 47.826 0.00 0.00 36.05 3.06
459 474 4.037222 TCACCCCACTTCTATAAGCATCA 58.963 43.478 0.00 0.00 36.05 3.07
460 475 4.636249 CTCACCCCACTTCTATAAGCATC 58.364 47.826 0.00 0.00 36.05 3.91
461 476 3.181450 GCTCACCCCACTTCTATAAGCAT 60.181 47.826 0.00 0.00 36.05 3.79
462 477 2.170607 GCTCACCCCACTTCTATAAGCA 59.829 50.000 0.00 0.00 36.05 3.91
463 478 2.803492 CGCTCACCCCACTTCTATAAGC 60.803 54.545 0.00 0.00 36.05 3.09
464 479 2.431057 ACGCTCACCCCACTTCTATAAG 59.569 50.000 0.00 0.00 38.77 1.73
465 480 2.167693 CACGCTCACCCCACTTCTATAA 59.832 50.000 0.00 0.00 0.00 0.98
466 481 1.754803 CACGCTCACCCCACTTCTATA 59.245 52.381 0.00 0.00 0.00 1.31
467 482 0.537188 CACGCTCACCCCACTTCTAT 59.463 55.000 0.00 0.00 0.00 1.98
468 483 1.972198 CACGCTCACCCCACTTCTA 59.028 57.895 0.00 0.00 0.00 2.10
469 484 2.743718 CACGCTCACCCCACTTCT 59.256 61.111 0.00 0.00 0.00 2.85
470 485 3.050275 GCACGCTCACCCCACTTC 61.050 66.667 0.00 0.00 0.00 3.01
471 486 4.988598 CGCACGCTCACCCCACTT 62.989 66.667 0.00 0.00 0.00 3.16
478 493 2.222953 ATAAACGCACGCACGCTCAC 62.223 55.000 0.00 0.00 36.19 3.51
479 494 0.733223 TATAAACGCACGCACGCTCA 60.733 50.000 0.00 0.00 36.19 4.26
480 495 0.044161 CTATAAACGCACGCACGCTC 60.044 55.000 0.00 0.00 36.19 5.03
481 496 1.418342 CCTATAAACGCACGCACGCT 61.418 55.000 0.00 0.00 36.19 5.07
482 497 1.012671 CCTATAAACGCACGCACGC 60.013 57.895 0.00 0.00 36.19 5.34
483 498 1.079875 ACCCTATAAACGCACGCACG 61.080 55.000 0.00 0.00 39.50 5.34
488 503 5.114081 ACTACATTCACCCTATAAACGCAC 58.886 41.667 0.00 0.00 0.00 5.34
499 514 3.123804 CACGAGCATACTACATTCACCC 58.876 50.000 0.00 0.00 0.00 4.61
501 516 5.977725 ACATACACGAGCATACTACATTCAC 59.022 40.000 0.00 0.00 0.00 3.18
502 517 5.977129 CACATACACGAGCATACTACATTCA 59.023 40.000 0.00 0.00 0.00 2.57
503 518 6.206498 TCACATACACGAGCATACTACATTC 58.794 40.000 0.00 0.00 0.00 2.67
504 519 6.144078 TCACATACACGAGCATACTACATT 57.856 37.500 0.00 0.00 0.00 2.71
505 520 5.763088 CTCACATACACGAGCATACTACAT 58.237 41.667 0.00 0.00 0.00 2.29
506 521 5.169836 CTCACATACACGAGCATACTACA 57.830 43.478 0.00 0.00 0.00 2.74
515 530 2.214244 CGAAATCGCTCACATACACGAG 59.786 50.000 0.00 0.00 38.04 4.18
516 531 2.159490 TCGAAATCGCTCACATACACGA 60.159 45.455 0.00 0.00 39.60 4.35
517 532 2.035674 GTCGAAATCGCTCACATACACG 60.036 50.000 0.00 0.00 39.60 4.49
518 533 3.000674 CAGTCGAAATCGCTCACATACAC 60.001 47.826 0.00 0.00 39.60 2.90
557 572 7.223971 GGATGCGCCTCGTTATCATTATTATTA 59.776 37.037 4.18 0.00 0.00 0.98
588 603 6.646240 ACAACTTGCACAGCTTAATAATTTGG 59.354 34.615 0.00 0.00 0.00 3.28
589 604 7.503991 CACAACTTGCACAGCTTAATAATTTG 58.496 34.615 0.00 0.00 0.00 2.32
590 605 7.642071 CACAACTTGCACAGCTTAATAATTT 57.358 32.000 0.00 0.00 0.00 1.82
670 685 7.633789 AGATGCCAACCTCTTTTTATCTCTTA 58.366 34.615 0.00 0.00 0.00 2.10
671 686 6.488715 AGATGCCAACCTCTTTTTATCTCTT 58.511 36.000 0.00 0.00 0.00 2.85
753 768 2.561478 TACTTGGGAGTGAAACCAGC 57.439 50.000 0.00 0.00 37.80 4.85
864 880 1.495574 AGAGTAGAGCAGGGTCGGTAT 59.504 52.381 0.00 0.00 0.00 2.73
868 884 1.944024 CAGTAGAGTAGAGCAGGGTCG 59.056 57.143 0.00 0.00 0.00 4.79
883 899 1.095600 TAGCGACAGAGGTGCAGTAG 58.904 55.000 0.00 0.00 0.00 2.57
898 914 3.378742 ACTCTCTGAAGTGGTATGTAGCG 59.621 47.826 0.00 0.00 0.00 4.26
1021 1043 3.573491 GAGCATAACGGCCACGGC 61.573 66.667 2.24 0.00 46.48 5.68
1022 1044 3.261951 CGAGCATAACGGCCACGG 61.262 66.667 2.24 0.00 46.48 4.94
1091 1113 2.895865 CCATCCTCAGCTGCTGCG 60.896 66.667 24.38 18.43 45.42 5.18
1250 1272 2.101750 ACGTATGGAATGGTCGTATGCA 59.898 45.455 0.00 0.00 30.70 3.96
1251 1273 2.475111 CACGTATGGAATGGTCGTATGC 59.525 50.000 0.00 0.00 31.11 3.14
1253 1275 2.750948 GCACGTATGGAATGGTCGTAT 58.249 47.619 0.00 0.00 31.11 3.06
1254 1276 1.534385 CGCACGTATGGAATGGTCGTA 60.534 52.381 0.00 0.00 31.11 3.43
1258 1280 1.153249 CCCGCACGTATGGAATGGT 60.153 57.895 6.81 0.00 0.00 3.55
1298 1333 1.805286 CGGCGGTAAGTAAATTTGCG 58.195 50.000 0.00 0.00 0.00 4.85
1299 1334 1.541475 GCGGCGGTAAGTAAATTTGC 58.459 50.000 9.78 0.00 0.00 3.68
1300 1335 1.129064 ACGCGGCGGTAAGTAAATTTG 59.871 47.619 27.37 0.00 0.00 2.32
1301 1336 1.394572 GACGCGGCGGTAAGTAAATTT 59.605 47.619 27.37 0.00 0.00 1.82
1306 1357 4.178214 CCGACGCGGCGGTAAGTA 62.178 66.667 44.18 0.00 46.07 2.24
1541 1611 3.060020 GCGTACGTGAGCTGGGCTA 62.060 63.158 17.90 0.00 39.88 3.93
1545 1620 1.878522 GATGGCGTACGTGAGCTGG 60.879 63.158 17.90 0.00 0.00 4.85
1595 1670 2.598099 TGCACCGGAGACCGTGTA 60.598 61.111 9.46 0.00 46.80 2.90
1703 1778 1.817099 GAGCTGCGGGAAGGTCATG 60.817 63.158 0.00 0.00 42.88 3.07
1779 1854 1.449601 GTGTGTATGCTGGGGACGG 60.450 63.158 0.00 0.00 40.79 4.79
1783 1858 1.277842 TGTAGTGTGTGTATGCTGGGG 59.722 52.381 0.00 0.00 0.00 4.96
1801 1876 4.339247 GGCATGTGATTATTAAGCTGGTGT 59.661 41.667 0.00 0.00 0.00 4.16
1802 1877 4.338964 TGGCATGTGATTATTAAGCTGGTG 59.661 41.667 0.00 0.00 0.00 4.17
1803 1878 4.339247 GTGGCATGTGATTATTAAGCTGGT 59.661 41.667 0.00 0.00 0.00 4.00
1804 1879 4.581824 AGTGGCATGTGATTATTAAGCTGG 59.418 41.667 0.00 0.00 0.00 4.85
1805 1880 5.762825 AGTGGCATGTGATTATTAAGCTG 57.237 39.130 0.00 0.00 0.00 4.24
1827 1902 3.805807 GCAGAGCTGGTTGGTTAGTGTAA 60.806 47.826 0.00 0.00 0.00 2.41
1874 1949 7.399523 CAGATGTTTAGTTTAGTAATCCGTGC 58.600 38.462 0.00 0.00 0.00 5.34
1877 1952 7.772332 AGCAGATGTTTAGTTTAGTAATCCG 57.228 36.000 0.00 0.00 0.00 4.18
1919 1994 3.442273 TCAGATAATTTGGGGTCGTTTGC 59.558 43.478 0.00 0.00 0.00 3.68
1924 1999 3.561725 GCTTCTCAGATAATTTGGGGTCG 59.438 47.826 0.00 0.00 0.00 4.79
1964 2039 1.324736 GCGATAACTGACAGCCTTTCG 59.675 52.381 1.25 7.83 0.00 3.46
2011 2086 0.110056 ATTCTTCGTGCTGCTTTGCG 60.110 50.000 0.00 0.80 35.36 4.85
2206 2321 4.946772 TCAGAAATGGATGCCGTTCATAAA 59.053 37.500 0.00 0.00 35.05 1.40
2208 2323 3.876914 GTCAGAAATGGATGCCGTTCATA 59.123 43.478 0.00 0.00 35.05 2.15
2209 2324 2.684881 GTCAGAAATGGATGCCGTTCAT 59.315 45.455 0.00 0.00 38.32 2.57
2250 2365 4.283467 ACAGGTGAAGTAGACATGTAAGCA 59.717 41.667 0.00 0.00 36.62 3.91
2251 2366 4.822026 ACAGGTGAAGTAGACATGTAAGC 58.178 43.478 0.00 0.00 36.62 3.09
2254 2369 9.416284 TGATAATACAGGTGAAGTAGACATGTA 57.584 33.333 0.00 0.00 42.77 2.29
2255 2370 8.306313 TGATAATACAGGTGAAGTAGACATGT 57.694 34.615 0.00 0.00 41.05 3.21
2340 2455 1.562008 TCGATGGTTGGGGCTAAATGA 59.438 47.619 0.00 0.00 0.00 2.57
2347 2462 1.146263 CTAGGTCGATGGTTGGGGC 59.854 63.158 0.00 0.00 0.00 5.80
2348 2463 0.464452 GTCTAGGTCGATGGTTGGGG 59.536 60.000 0.00 0.00 0.00 4.96
2349 2464 1.486211 AGTCTAGGTCGATGGTTGGG 58.514 55.000 0.00 0.00 0.00 4.12
2350 2465 3.611766 AAAGTCTAGGTCGATGGTTGG 57.388 47.619 0.00 0.00 0.00 3.77
2370 2485 5.009210 CAGTTTCCTACATGGTTCGGAAAAA 59.991 40.000 16.41 0.60 44.44 1.94
2371 2486 4.517453 CAGTTTCCTACATGGTTCGGAAAA 59.483 41.667 16.41 4.60 44.44 2.29
2372 2487 4.069304 CAGTTTCCTACATGGTTCGGAAA 58.931 43.478 12.85 12.85 41.72 3.13
2373 2488 3.670625 CAGTTTCCTACATGGTTCGGAA 58.329 45.455 0.00 0.42 37.07 4.30
2374 2489 2.614481 GCAGTTTCCTACATGGTTCGGA 60.614 50.000 0.00 0.00 37.07 4.55
2375 2490 1.737793 GCAGTTTCCTACATGGTTCGG 59.262 52.381 0.00 0.00 37.07 4.30
2376 2491 2.159627 GTGCAGTTTCCTACATGGTTCG 59.840 50.000 0.00 0.00 37.07 3.95
2377 2492 2.159627 CGTGCAGTTTCCTACATGGTTC 59.840 50.000 0.00 0.00 37.07 3.62
2378 2493 2.151202 CGTGCAGTTTCCTACATGGTT 58.849 47.619 0.00 0.00 37.07 3.67
2379 2494 1.071699 ACGTGCAGTTTCCTACATGGT 59.928 47.619 0.00 0.00 37.07 3.55
2380 2495 1.464608 CACGTGCAGTTTCCTACATGG 59.535 52.381 0.82 0.00 37.10 3.66
2381 2496 2.143122 ACACGTGCAGTTTCCTACATG 58.857 47.619 17.22 0.00 0.00 3.21
2382 2497 2.413837 GACACGTGCAGTTTCCTACAT 58.586 47.619 17.22 0.00 0.00 2.29
2383 2498 1.860676 GACACGTGCAGTTTCCTACA 58.139 50.000 17.22 0.00 0.00 2.74
2384 2499 0.782384 CGACACGTGCAGTTTCCTAC 59.218 55.000 17.22 0.00 0.00 3.18
2385 2500 0.669619 TCGACACGTGCAGTTTCCTA 59.330 50.000 17.22 0.00 0.00 2.94
2386 2501 0.179094 TTCGACACGTGCAGTTTCCT 60.179 50.000 17.22 0.00 0.00 3.36
2387 2502 0.042448 GTTCGACACGTGCAGTTTCC 60.042 55.000 17.22 0.00 0.00 3.13
2388 2503 0.928229 AGTTCGACACGTGCAGTTTC 59.072 50.000 17.22 4.07 0.00 2.78
2389 2504 2.124903 CTAGTTCGACACGTGCAGTTT 58.875 47.619 17.22 0.00 0.00 2.66
2390 2505 1.335810 TCTAGTTCGACACGTGCAGTT 59.664 47.619 17.22 0.00 0.00 3.16
2391 2506 0.949397 TCTAGTTCGACACGTGCAGT 59.051 50.000 17.22 0.00 0.00 4.40
2392 2507 1.069159 AGTCTAGTTCGACACGTGCAG 60.069 52.381 17.22 10.15 36.38 4.41
2393 2508 0.949397 AGTCTAGTTCGACACGTGCA 59.051 50.000 17.22 0.00 36.38 4.57
2394 2509 2.047679 AAGTCTAGTTCGACACGTGC 57.952 50.000 17.22 7.72 36.38 5.34
2395 2510 3.910767 GGTAAAGTCTAGTTCGACACGTG 59.089 47.826 15.48 15.48 36.38 4.49
2396 2511 3.565482 TGGTAAAGTCTAGTTCGACACGT 59.435 43.478 0.00 0.00 36.38 4.49
2397 2512 4.151258 TGGTAAAGTCTAGTTCGACACG 57.849 45.455 0.00 0.00 36.38 4.49
2398 2513 7.062722 GGTAATTGGTAAAGTCTAGTTCGACAC 59.937 40.741 0.00 0.00 36.38 3.67
2399 2514 7.092716 GGTAATTGGTAAAGTCTAGTTCGACA 58.907 38.462 0.00 0.00 36.38 4.35
2400 2515 7.092716 TGGTAATTGGTAAAGTCTAGTTCGAC 58.907 38.462 0.00 0.00 0.00 4.20
2406 2521 9.396022 ACATCATTGGTAATTGGTAAAGTCTAG 57.604 33.333 0.00 0.00 0.00 2.43
2421 2536 4.080413 TGGATTCTCAGCACATCATTGGTA 60.080 41.667 0.00 0.00 0.00 3.25
2422 2537 3.285484 GGATTCTCAGCACATCATTGGT 58.715 45.455 0.00 0.00 0.00 3.67
2423 2538 3.284617 TGGATTCTCAGCACATCATTGG 58.715 45.455 0.00 0.00 0.00 3.16
2424 2539 4.157105 TGTTGGATTCTCAGCACATCATTG 59.843 41.667 0.00 0.00 0.00 2.82
2425 2540 4.338012 TGTTGGATTCTCAGCACATCATT 58.662 39.130 0.00 0.00 0.00 2.57
2426 2541 3.945921 CTGTTGGATTCTCAGCACATCAT 59.054 43.478 0.00 0.00 0.00 2.45
2427 2542 3.008266 TCTGTTGGATTCTCAGCACATCA 59.992 43.478 0.00 0.00 0.00 3.07
2428 2543 3.603532 TCTGTTGGATTCTCAGCACATC 58.396 45.455 0.00 0.00 0.00 3.06
2429 2544 3.708403 TCTGTTGGATTCTCAGCACAT 57.292 42.857 0.00 0.00 0.00 3.21
2430 2545 3.490439 TTCTGTTGGATTCTCAGCACA 57.510 42.857 0.00 0.00 0.00 4.57
2431 2546 3.057946 GGTTTCTGTTGGATTCTCAGCAC 60.058 47.826 0.00 0.00 0.00 4.40
2432 2547 3.149196 GGTTTCTGTTGGATTCTCAGCA 58.851 45.455 0.00 0.00 0.00 4.41
2529 2645 5.637810 CCTTTTCATGTACTCGCTAAACTGA 59.362 40.000 0.00 0.00 0.00 3.41
2531 2647 5.790593 TCCTTTTCATGTACTCGCTAAACT 58.209 37.500 0.00 0.00 0.00 2.66
2532 2648 6.476243 TTCCTTTTCATGTACTCGCTAAAC 57.524 37.500 0.00 0.00 0.00 2.01
2533 2649 7.499321 TTTTCCTTTTCATGTACTCGCTAAA 57.501 32.000 0.00 0.00 0.00 1.85
2534 2650 7.499321 TTTTTCCTTTTCATGTACTCGCTAA 57.501 32.000 0.00 0.00 0.00 3.09
2535 2651 7.681939 ATTTTTCCTTTTCATGTACTCGCTA 57.318 32.000 0.00 0.00 0.00 4.26
2536 2652 6.575162 ATTTTTCCTTTTCATGTACTCGCT 57.425 33.333 0.00 0.00 0.00 4.93
2537 2653 7.637709 AAATTTTTCCTTTTCATGTACTCGC 57.362 32.000 0.00 0.00 0.00 5.03
2544 2660 9.762933 TTCCTCTGTAAATTTTTCCTTTTCATG 57.237 29.630 0.00 0.00 0.00 3.07
2558 2674 4.973168 TCAGTGCTTGTTCCTCTGTAAAT 58.027 39.130 0.00 0.00 0.00 1.40
2561 2677 4.623932 ATTCAGTGCTTGTTCCTCTGTA 57.376 40.909 0.00 0.00 0.00 2.74
2562 2678 3.498774 ATTCAGTGCTTGTTCCTCTGT 57.501 42.857 0.00 0.00 0.00 3.41
2563 2679 4.070716 AGAATTCAGTGCTTGTTCCTCTG 58.929 43.478 8.44 0.00 0.00 3.35
2564 2680 4.363991 AGAATTCAGTGCTTGTTCCTCT 57.636 40.909 8.44 0.00 0.00 3.69
2567 2683 3.243501 TGCAAGAATTCAGTGCTTGTTCC 60.244 43.478 25.52 5.20 40.73 3.62
2568 2684 3.968649 TGCAAGAATTCAGTGCTTGTTC 58.031 40.909 25.52 5.73 40.73 3.18
2571 2687 3.250744 CCATGCAAGAATTCAGTGCTTG 58.749 45.455 26.52 26.52 40.95 4.01
2574 2690 2.730090 CGACCATGCAAGAATTCAGTGC 60.730 50.000 21.20 21.20 38.78 4.40
2576 2692 3.057969 TCGACCATGCAAGAATTCAGT 57.942 42.857 8.44 0.00 0.00 3.41
2577 2693 3.725895 CGTTCGACCATGCAAGAATTCAG 60.726 47.826 8.44 0.69 0.00 3.02
2579 2695 2.159627 ACGTTCGACCATGCAAGAATTC 59.840 45.455 0.00 0.00 0.00 2.17
3082 7878 1.955778 CAGCATCCACCAACAGTTTGA 59.044 47.619 0.00 0.00 34.24 2.69
3083 7879 1.682854 ACAGCATCCACCAACAGTTTG 59.317 47.619 0.00 0.00 0.00 2.93
3105 7901 7.540055 CAGATGACCAAAGAATAAGAGCAAAAC 59.460 37.037 0.00 0.00 0.00 2.43
3198 7997 0.944386 ACCTCGTGCATTGTTCACAC 59.056 50.000 0.00 0.00 34.27 3.82
3200 7999 2.139917 TGTACCTCGTGCATTGTTCAC 58.860 47.619 0.00 0.00 0.00 3.18
3201 8000 2.535012 TGTACCTCGTGCATTGTTCA 57.465 45.000 0.00 0.00 0.00 3.18
3202 8001 3.064207 TCTTGTACCTCGTGCATTGTTC 58.936 45.455 0.00 0.00 0.00 3.18
3203 8002 3.120321 TCTTGTACCTCGTGCATTGTT 57.880 42.857 0.00 0.00 0.00 2.83
3205 8004 3.684305 TCAATCTTGTACCTCGTGCATTG 59.316 43.478 0.00 0.00 0.00 2.82
3206 8005 3.937814 TCAATCTTGTACCTCGTGCATT 58.062 40.909 0.00 0.00 0.00 3.56
3215 8034 9.988815 ATATGAGTACATCTTCAATCTTGTACC 57.011 33.333 8.09 2.52 43.37 3.34
3230 8049 9.688091 ATATCTTCCGAGTACATATGAGTACAT 57.312 33.333 10.38 0.00 45.25 2.29
3241 8060 9.511272 TTGCTACTTATATATCTTCCGAGTACA 57.489 33.333 0.00 0.00 0.00 2.90
3260 8088 9.982651 AGTTATATATGTTTCGTCATTGCTACT 57.017 29.630 0.00 0.00 0.00 2.57
3262 8090 8.708742 GCAGTTATATATGTTTCGTCATTGCTA 58.291 33.333 0.00 0.00 0.00 3.49
3263 8091 7.569408 CGCAGTTATATATGTTTCGTCATTGCT 60.569 37.037 0.00 0.00 0.00 3.91
3264 8092 6.516355 CGCAGTTATATATGTTTCGTCATTGC 59.484 38.462 0.00 0.00 0.00 3.56
3266 8094 7.652105 AGTCGCAGTTATATATGTTTCGTCATT 59.348 33.333 0.00 0.00 0.00 2.57
3268 8096 6.500910 AGTCGCAGTTATATATGTTTCGTCA 58.499 36.000 0.00 0.00 0.00 4.35
3280 8108 6.871492 TCTGAATTTTGTGAGTCGCAGTTATA 59.129 34.615 6.47 0.00 0.00 0.98
3283 8111 3.876914 TCTGAATTTTGTGAGTCGCAGTT 59.123 39.130 6.47 3.89 0.00 3.16
3289 8117 8.874816 GGTATTACTCTCTGAATTTTGTGAGTC 58.125 37.037 14.96 0.00 37.88 3.36
3318 8146 9.500785 TGATGAGACAATTTCATACACTTGTAA 57.499 29.630 0.00 0.00 35.50 2.41
3342 8170 8.682710 GGTGGCTTATATTTGTTGTCTATTTGA 58.317 33.333 0.00 0.00 0.00 2.69
3343 8171 8.686334 AGGTGGCTTATATTTGTTGTCTATTTG 58.314 33.333 0.00 0.00 0.00 2.32
3344 8172 8.823220 AGGTGGCTTATATTTGTTGTCTATTT 57.177 30.769 0.00 0.00 0.00 1.40
3345 8173 8.275040 AGAGGTGGCTTATATTTGTTGTCTATT 58.725 33.333 0.00 0.00 0.00 1.73
3347 8175 7.047891 CAGAGGTGGCTTATATTTGTTGTCTA 58.952 38.462 0.00 0.00 0.00 2.59
3349 8177 5.066505 CCAGAGGTGGCTTATATTTGTTGTC 59.933 44.000 0.00 0.00 36.89 3.18
3350 8178 4.949856 CCAGAGGTGGCTTATATTTGTTGT 59.050 41.667 0.00 0.00 36.89 3.32
3368 8200 4.099113 TGATCAGTTGCTATCTGACCAGAG 59.901 45.833 5.90 0.00 43.32 3.35
3373 8205 9.703892 AATAGTAATGATCAGTTGCTATCTGAC 57.296 33.333 18.93 4.66 43.32 3.51
3400 8232 9.726438 ACTCTGCTATATGTTTCTTTAAGTTGT 57.274 29.630 0.00 0.00 0.00 3.32
3402 8234 9.944376 TGACTCTGCTATATGTTTCTTTAAGTT 57.056 29.630 0.00 0.00 0.00 2.66
3405 8237 9.330063 CCATGACTCTGCTATATGTTTCTTTAA 57.670 33.333 0.00 0.00 0.00 1.52
3406 8238 8.704668 TCCATGACTCTGCTATATGTTTCTTTA 58.295 33.333 0.00 0.00 0.00 1.85
3407 8239 7.497249 GTCCATGACTCTGCTATATGTTTCTTT 59.503 37.037 0.00 0.00 0.00 2.52
3415 8249 7.544804 TGTATTGTCCATGACTCTGCTATAT 57.455 36.000 0.00 0.00 33.15 0.86
3416 8250 6.976934 TGTATTGTCCATGACTCTGCTATA 57.023 37.500 0.00 0.00 33.15 1.31
3418 8252 5.876651 ATGTATTGTCCATGACTCTGCTA 57.123 39.130 0.00 0.00 33.15 3.49
3424 8258 6.688578 GGACGTATATGTATTGTCCATGACT 58.311 40.000 14.84 0.00 46.55 3.41
3425 8259 6.946229 GGACGTATATGTATTGTCCATGAC 57.054 41.667 14.84 0.00 46.55 3.06
3455 8290 4.338879 AGTTTCCTCATGCTTGCAGTATT 58.661 39.130 0.87 0.00 0.00 1.89
3466 8301 4.580167 TGTGTTTCCTGAAGTTTCCTCATG 59.420 41.667 0.00 0.00 0.00 3.07
3467 8302 4.792068 TGTGTTTCCTGAAGTTTCCTCAT 58.208 39.130 0.00 0.00 0.00 2.90
3481 8316 1.398390 CTAGCGCCTCATTGTGTTTCC 59.602 52.381 2.29 0.00 0.00 3.13
3484 8319 0.613260 TCCTAGCGCCTCATTGTGTT 59.387 50.000 2.29 0.00 0.00 3.32
3485 8320 0.108138 GTCCTAGCGCCTCATTGTGT 60.108 55.000 2.29 0.00 0.00 3.72
3489 8324 2.014068 GCTTTGTCCTAGCGCCTCATT 61.014 52.381 2.29 0.00 0.00 2.57
3490 8325 0.462759 GCTTTGTCCTAGCGCCTCAT 60.463 55.000 2.29 0.00 0.00 2.90
3492 8327 1.079127 TGCTTTGTCCTAGCGCCTC 60.079 57.895 2.29 0.00 41.54 4.70
3493 8328 1.078848 CTGCTTTGTCCTAGCGCCT 60.079 57.895 2.29 0.00 41.54 5.52
3494 8329 1.079127 TCTGCTTTGTCCTAGCGCC 60.079 57.895 2.29 0.00 41.54 6.53
3518 8353 1.071605 GAAGCGCACCTGACAAGTAG 58.928 55.000 11.47 0.00 0.00 2.57
3523 8358 0.035317 AAGATGAAGCGCACCTGACA 59.965 50.000 11.47 0.07 0.00 3.58
3644 8479 4.772624 ACTACTCAGTGATTGCTGGAACTA 59.227 41.667 0.00 0.00 37.12 2.24
3669 8504 6.038356 CCATGAACTTGAAACATTATGGCTC 58.962 40.000 0.00 0.00 0.00 4.70
3776 8611 6.127338 CCCATCGATCTATAGCAATAACCTCA 60.127 42.308 0.00 0.00 0.00 3.86
3807 8642 1.346068 GGAAGTCAGCTCCAGACACTT 59.654 52.381 5.57 0.00 38.46 3.16
3930 8765 4.425772 TGTTAGAATCCCTTGACCTCTCA 58.574 43.478 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.