Multiple sequence alignment - TraesCS6A01G136200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G136200 chr6A 100.000 2811 0 0 1 2811 107356833 107359643 0.000000e+00 5192.0
1 TraesCS6A01G136200 chr6A 92.676 751 52 2 2059 2808 47135519 47136267 0.000000e+00 1079.0
2 TraesCS6A01G136200 chr6A 82.270 564 75 21 183 733 12425009 12424458 5.480000e-127 464.0
3 TraesCS6A01G136200 chr6D 91.473 1032 56 17 1034 2062 89202101 89203103 0.000000e+00 1389.0
4 TraesCS6A01G136200 chr6D 88.065 1039 91 24 1035 2062 89239941 89240957 0.000000e+00 1201.0
5 TraesCS6A01G136200 chr6D 82.071 1043 144 27 1035 2064 57583146 57584158 0.000000e+00 850.0
6 TraesCS6A01G136200 chr6D 81.625 566 85 16 183 737 422025787 422026344 4.270000e-123 451.0
7 TraesCS6A01G136200 chr6B 86.827 1040 103 23 1035 2062 171446437 171447454 0.000000e+00 1131.0
8 TraesCS6A01G136200 chr6B 82.037 1041 147 24 1035 2064 129564282 129565293 0.000000e+00 850.0
9 TraesCS6A01G136200 chr1A 92.829 753 46 7 2059 2808 533304661 533305408 0.000000e+00 1085.0
10 TraesCS6A01G136200 chr1A 79.897 194 23 9 355 544 532109908 532110089 8.170000e-26 128.0
11 TraesCS6A01G136200 chr4A 91.645 754 60 2 2059 2811 640944527 640943776 0.000000e+00 1040.0
12 TraesCS6A01G136200 chr4A 89.737 760 67 9 2059 2811 20244381 20243626 0.000000e+00 961.0
13 TraesCS6A01G136200 chr7A 91.299 747 52 7 2063 2808 519135324 519136058 0.000000e+00 1007.0
14 TraesCS6A01G136200 chr3A 88.771 757 70 12 2061 2811 248581 247834 0.000000e+00 913.0
15 TraesCS6A01G136200 chr3A 90.667 75 7 0 948 1022 190224944 190225018 1.780000e-17 100.0
16 TraesCS6A01G136200 chr5B 88.158 760 78 10 2058 2811 442850531 442849778 0.000000e+00 894.0
17 TraesCS6A01G136200 chr5B 87.420 779 85 8 2039 2808 670356181 670356955 0.000000e+00 883.0
18 TraesCS6A01G136200 chr5B 77.593 540 84 29 156 679 465986585 465987103 2.740000e-75 292.0
19 TraesCS6A01G136200 chr3B 88.228 756 79 10 2059 2808 166171570 166172321 0.000000e+00 894.0
20 TraesCS6A01G136200 chr3B 77.974 227 43 6 814 1036 775036328 775036551 4.880000e-28 135.0
21 TraesCS6A01G136200 chr2D 82.336 1036 142 24 1041 2064 360990697 360989691 0.000000e+00 861.0
22 TraesCS6A01G136200 chr2D 84.493 819 110 14 1041 1851 360793067 360792258 0.000000e+00 793.0
23 TraesCS6A01G136200 chr2D 83.632 837 116 16 1104 1932 360725313 360724490 0.000000e+00 767.0
24 TraesCS6A01G136200 chr2D 74.783 460 88 22 148 597 44735432 44734991 6.190000e-42 182.0
25 TraesCS6A01G136200 chr2D 77.500 320 58 14 148 461 44687700 44687389 2.220000e-41 180.0
26 TraesCS6A01G136200 chr2B 82.327 911 136 18 1041 1940 428796349 428795453 0.000000e+00 767.0
27 TraesCS6A01G136200 chr2B 75.500 400 65 21 186 573 61260986 61261364 6.230000e-37 165.0
28 TraesCS6A01G136200 chr5A 76.274 569 89 34 144 684 490294159 490294709 7.720000e-66 261.0
29 TraesCS6A01G136200 chr5A 96.875 32 1 0 697 728 490294710 490294741 1.000000e-03 54.7
30 TraesCS6A01G136200 chr7D 75.880 568 96 28 175 733 529490623 529491158 4.650000e-63 252.0
31 TraesCS6A01G136200 chr7D 76.132 243 38 8 814 1036 531424127 531423885 2.960000e-20 110.0
32 TraesCS6A01G136200 chr3D 77.221 439 76 16 183 614 36167250 36166829 4.680000e-58 235.0
33 TraesCS6A01G136200 chr3D 73.756 221 45 12 515 724 22324781 22324999 1.080000e-09 75.0
34 TraesCS6A01G136200 chr2A 75.442 509 91 24 184 682 88853284 88852800 1.700000e-52 217.0
35 TraesCS6A01G136200 chr1D 75.062 401 68 18 152 544 433529628 433530004 1.040000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G136200 chr6A 107356833 107359643 2810 False 5192 5192 100.000 1 2811 1 chr6A.!!$F2 2810
1 TraesCS6A01G136200 chr6A 47135519 47136267 748 False 1079 1079 92.676 2059 2808 1 chr6A.!!$F1 749
2 TraesCS6A01G136200 chr6A 12424458 12425009 551 True 464 464 82.270 183 733 1 chr6A.!!$R1 550
3 TraesCS6A01G136200 chr6D 89202101 89203103 1002 False 1389 1389 91.473 1034 2062 1 chr6D.!!$F2 1028
4 TraesCS6A01G136200 chr6D 89239941 89240957 1016 False 1201 1201 88.065 1035 2062 1 chr6D.!!$F3 1027
5 TraesCS6A01G136200 chr6D 57583146 57584158 1012 False 850 850 82.071 1035 2064 1 chr6D.!!$F1 1029
6 TraesCS6A01G136200 chr6D 422025787 422026344 557 False 451 451 81.625 183 737 1 chr6D.!!$F4 554
7 TraesCS6A01G136200 chr6B 171446437 171447454 1017 False 1131 1131 86.827 1035 2062 1 chr6B.!!$F2 1027
8 TraesCS6A01G136200 chr6B 129564282 129565293 1011 False 850 850 82.037 1035 2064 1 chr6B.!!$F1 1029
9 TraesCS6A01G136200 chr1A 533304661 533305408 747 False 1085 1085 92.829 2059 2808 1 chr1A.!!$F2 749
10 TraesCS6A01G136200 chr4A 640943776 640944527 751 True 1040 1040 91.645 2059 2811 1 chr4A.!!$R2 752
11 TraesCS6A01G136200 chr4A 20243626 20244381 755 True 961 961 89.737 2059 2811 1 chr4A.!!$R1 752
12 TraesCS6A01G136200 chr7A 519135324 519136058 734 False 1007 1007 91.299 2063 2808 1 chr7A.!!$F1 745
13 TraesCS6A01G136200 chr3A 247834 248581 747 True 913 913 88.771 2061 2811 1 chr3A.!!$R1 750
14 TraesCS6A01G136200 chr5B 442849778 442850531 753 True 894 894 88.158 2058 2811 1 chr5B.!!$R1 753
15 TraesCS6A01G136200 chr5B 670356181 670356955 774 False 883 883 87.420 2039 2808 1 chr5B.!!$F2 769
16 TraesCS6A01G136200 chr5B 465986585 465987103 518 False 292 292 77.593 156 679 1 chr5B.!!$F1 523
17 TraesCS6A01G136200 chr3B 166171570 166172321 751 False 894 894 88.228 2059 2808 1 chr3B.!!$F1 749
18 TraesCS6A01G136200 chr2D 360989691 360990697 1006 True 861 861 82.336 1041 2064 1 chr2D.!!$R5 1023
19 TraesCS6A01G136200 chr2D 360792258 360793067 809 True 793 793 84.493 1041 1851 1 chr2D.!!$R4 810
20 TraesCS6A01G136200 chr2D 360724490 360725313 823 True 767 767 83.632 1104 1932 1 chr2D.!!$R3 828
21 TraesCS6A01G136200 chr2B 428795453 428796349 896 True 767 767 82.327 1041 1940 1 chr2B.!!$R1 899
22 TraesCS6A01G136200 chr7D 529490623 529491158 535 False 252 252 75.880 175 733 1 chr7D.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 978 0.175073 GATATCCCGGGGTGCGTATC 59.825 60.0 23.5 9.87 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2048 3.181443 CCCGATACCCCTTGATTTAAGCT 60.181 47.826 0.0 0.0 34.96 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.310382 TGAAGTTATTATTTTTGTGGTGGATGG 58.690 33.333 0.00 0.00 0.00 3.51
27 28 6.639563 AGTTATTATTTTTGTGGTGGATGGC 58.360 36.000 0.00 0.00 0.00 4.40
28 29 6.440328 AGTTATTATTTTTGTGGTGGATGGCT 59.560 34.615 0.00 0.00 0.00 4.75
29 30 7.617723 AGTTATTATTTTTGTGGTGGATGGCTA 59.382 33.333 0.00 0.00 0.00 3.93
30 31 8.421002 GTTATTATTTTTGTGGTGGATGGCTAT 58.579 33.333 0.00 0.00 0.00 2.97
31 32 6.865834 TTATTTTTGTGGTGGATGGCTATT 57.134 33.333 0.00 0.00 0.00 1.73
32 33 4.533919 TTTTTGTGGTGGATGGCTATTG 57.466 40.909 0.00 0.00 0.00 1.90
33 34 2.897271 TTGTGGTGGATGGCTATTGT 57.103 45.000 0.00 0.00 0.00 2.71
34 35 2.127271 TGTGGTGGATGGCTATTGTG 57.873 50.000 0.00 0.00 0.00 3.33
35 36 0.740737 GTGGTGGATGGCTATTGTGC 59.259 55.000 0.00 0.00 0.00 4.57
36 37 0.330941 TGGTGGATGGCTATTGTGCA 59.669 50.000 0.00 0.00 34.04 4.57
37 38 1.027357 GGTGGATGGCTATTGTGCAG 58.973 55.000 0.00 0.00 34.04 4.41
38 39 1.683011 GGTGGATGGCTATTGTGCAGT 60.683 52.381 0.00 0.00 34.04 4.40
39 40 1.402968 GTGGATGGCTATTGTGCAGTG 59.597 52.381 0.00 0.00 34.04 3.66
40 41 1.281577 TGGATGGCTATTGTGCAGTGA 59.718 47.619 0.00 0.00 34.04 3.41
41 42 1.672881 GGATGGCTATTGTGCAGTGAC 59.327 52.381 0.00 0.00 34.04 3.67
42 43 1.672881 GATGGCTATTGTGCAGTGACC 59.327 52.381 0.00 0.00 34.04 4.02
43 44 0.399833 TGGCTATTGTGCAGTGACCA 59.600 50.000 0.00 0.00 34.04 4.02
44 45 1.202867 TGGCTATTGTGCAGTGACCAA 60.203 47.619 0.00 0.00 34.04 3.67
45 46 1.885887 GGCTATTGTGCAGTGACCAAA 59.114 47.619 0.00 0.00 34.04 3.28
46 47 2.493278 GGCTATTGTGCAGTGACCAAAT 59.507 45.455 0.00 0.00 34.04 2.32
47 48 3.056607 GGCTATTGTGCAGTGACCAAATT 60.057 43.478 0.00 0.00 34.04 1.82
48 49 4.559153 GCTATTGTGCAGTGACCAAATTT 58.441 39.130 0.00 0.00 0.00 1.82
49 50 4.386652 GCTATTGTGCAGTGACCAAATTTG 59.613 41.667 11.40 11.40 0.00 2.32
50 51 4.669206 ATTGTGCAGTGACCAAATTTGA 57.331 36.364 19.86 0.00 0.00 2.69
51 52 4.462508 TTGTGCAGTGACCAAATTTGAA 57.537 36.364 19.86 2.08 0.00 2.69
52 53 4.044336 TGTGCAGTGACCAAATTTGAAG 57.956 40.909 19.86 6.33 0.00 3.02
53 54 3.446873 TGTGCAGTGACCAAATTTGAAGT 59.553 39.130 19.86 9.65 0.00 3.01
54 55 4.081752 TGTGCAGTGACCAAATTTGAAGTT 60.082 37.500 19.86 0.72 0.00 2.66
55 56 5.126222 TGTGCAGTGACCAAATTTGAAGTTA 59.874 36.000 19.86 4.02 0.00 2.24
56 57 6.183360 TGTGCAGTGACCAAATTTGAAGTTAT 60.183 34.615 19.86 0.00 0.00 1.89
57 58 6.701400 GTGCAGTGACCAAATTTGAAGTTATT 59.299 34.615 19.86 1.19 0.00 1.40
58 59 7.865385 GTGCAGTGACCAAATTTGAAGTTATTA 59.135 33.333 19.86 0.00 0.00 0.98
59 60 8.584157 TGCAGTGACCAAATTTGAAGTTATTAT 58.416 29.630 19.86 0.00 0.00 1.28
60 61 9.423061 GCAGTGACCAAATTTGAAGTTATTATT 57.577 29.630 19.86 0.00 0.00 1.40
72 73 9.535878 TTTGAAGTTATTATTTTGGTGGTGAAC 57.464 29.630 0.00 0.00 0.00 3.18
73 74 8.472007 TGAAGTTATTATTTTGGTGGTGAACT 57.528 30.769 0.00 0.00 0.00 3.01
74 75 9.575868 TGAAGTTATTATTTTGGTGGTGAACTA 57.424 29.630 0.00 0.00 0.00 2.24
77 78 9.185680 AGTTATTATTTTGGTGGTGAACTATCC 57.814 33.333 0.00 0.00 0.00 2.59
78 79 8.410912 GTTATTATTTTGGTGGTGAACTATCCC 58.589 37.037 0.00 0.00 0.00 3.85
79 80 4.675063 ATTTTGGTGGTGAACTATCCCT 57.325 40.909 0.00 0.00 0.00 4.20
80 81 3.713826 TTTGGTGGTGAACTATCCCTC 57.286 47.619 0.00 0.00 0.00 4.30
81 82 1.191535 TGGTGGTGAACTATCCCTCG 58.808 55.000 0.00 0.00 0.00 4.63
82 83 1.272816 TGGTGGTGAACTATCCCTCGA 60.273 52.381 0.00 0.00 0.00 4.04
83 84 1.409427 GGTGGTGAACTATCCCTCGAG 59.591 57.143 5.13 5.13 0.00 4.04
84 85 2.376109 GTGGTGAACTATCCCTCGAGA 58.624 52.381 15.71 0.00 0.00 4.04
85 86 2.959707 GTGGTGAACTATCCCTCGAGAT 59.040 50.000 15.71 2.85 0.00 2.75
86 87 3.385111 GTGGTGAACTATCCCTCGAGATT 59.615 47.826 15.71 0.13 0.00 2.40
87 88 4.030913 TGGTGAACTATCCCTCGAGATTT 58.969 43.478 15.71 0.00 0.00 2.17
88 89 4.099573 TGGTGAACTATCCCTCGAGATTTC 59.900 45.833 15.71 4.58 0.00 2.17
89 90 4.342665 GGTGAACTATCCCTCGAGATTTCT 59.657 45.833 15.71 0.00 0.00 2.52
90 91 5.163395 GGTGAACTATCCCTCGAGATTTCTT 60.163 44.000 15.71 0.00 0.00 2.52
91 92 6.342111 GTGAACTATCCCTCGAGATTTCTTT 58.658 40.000 15.71 0.00 0.00 2.52
92 93 6.819146 GTGAACTATCCCTCGAGATTTCTTTT 59.181 38.462 15.71 0.00 0.00 2.27
93 94 7.334671 GTGAACTATCCCTCGAGATTTCTTTTT 59.665 37.037 15.71 0.00 0.00 1.94
94 95 7.334421 TGAACTATCCCTCGAGATTTCTTTTTG 59.666 37.037 15.71 0.00 0.00 2.44
95 96 6.712276 ACTATCCCTCGAGATTTCTTTTTGT 58.288 36.000 15.71 0.00 0.00 2.83
96 97 7.168905 ACTATCCCTCGAGATTTCTTTTTGTT 58.831 34.615 15.71 0.00 0.00 2.83
97 98 5.689383 TCCCTCGAGATTTCTTTTTGTTG 57.311 39.130 15.71 0.00 0.00 3.33
98 99 4.518970 TCCCTCGAGATTTCTTTTTGTTGG 59.481 41.667 15.71 0.79 0.00 3.77
99 100 4.321230 CCCTCGAGATTTCTTTTTGTTGGG 60.321 45.833 15.71 0.00 0.00 4.12
100 101 4.229876 CTCGAGATTTCTTTTTGTTGGGC 58.770 43.478 6.58 0.00 0.00 5.36
101 102 3.888930 TCGAGATTTCTTTTTGTTGGGCT 59.111 39.130 0.00 0.00 0.00 5.19
102 103 4.023193 TCGAGATTTCTTTTTGTTGGGCTC 60.023 41.667 0.00 0.00 0.00 4.70
103 104 4.229876 GAGATTTCTTTTTGTTGGGCTCG 58.770 43.478 0.00 0.00 0.00 5.03
104 105 3.888930 AGATTTCTTTTTGTTGGGCTCGA 59.111 39.130 0.00 0.00 0.00 4.04
105 106 4.340950 AGATTTCTTTTTGTTGGGCTCGAA 59.659 37.500 0.00 0.00 0.00 3.71
106 107 4.664150 TTTCTTTTTGTTGGGCTCGAAT 57.336 36.364 0.00 0.00 0.00 3.34
107 108 3.641437 TCTTTTTGTTGGGCTCGAATG 57.359 42.857 0.00 0.00 0.00 2.67
108 109 2.955660 TCTTTTTGTTGGGCTCGAATGT 59.044 40.909 0.00 0.00 0.00 2.71
109 110 3.383185 TCTTTTTGTTGGGCTCGAATGTT 59.617 39.130 0.00 0.00 0.00 2.71
110 111 2.791383 TTTGTTGGGCTCGAATGTTG 57.209 45.000 0.00 0.00 0.00 3.33
111 112 0.313672 TTGTTGGGCTCGAATGTTGC 59.686 50.000 0.00 0.00 0.00 4.17
112 113 0.537143 TGTTGGGCTCGAATGTTGCT 60.537 50.000 0.00 0.00 0.00 3.91
113 114 1.271108 TGTTGGGCTCGAATGTTGCTA 60.271 47.619 0.00 0.00 0.00 3.49
114 115 1.398390 GTTGGGCTCGAATGTTGCTAG 59.602 52.381 0.00 0.00 0.00 3.42
115 116 0.901827 TGGGCTCGAATGTTGCTAGA 59.098 50.000 0.00 0.00 0.00 2.43
116 117 1.134699 TGGGCTCGAATGTTGCTAGAG 60.135 52.381 0.00 0.00 0.00 2.43
117 118 1.137086 GGGCTCGAATGTTGCTAGAGA 59.863 52.381 0.00 0.00 0.00 3.10
118 119 2.197577 GGCTCGAATGTTGCTAGAGAC 58.802 52.381 0.00 0.00 0.00 3.36
119 120 2.417379 GGCTCGAATGTTGCTAGAGACA 60.417 50.000 0.00 0.00 36.97 3.41
120 121 3.452474 GCTCGAATGTTGCTAGAGACAT 58.548 45.455 0.00 0.00 38.08 3.06
121 122 4.499865 GGCTCGAATGTTGCTAGAGACATA 60.500 45.833 10.63 0.00 36.97 2.29
122 123 5.226396 GCTCGAATGTTGCTAGAGACATAT 58.774 41.667 10.63 3.79 35.55 1.78
123 124 5.344665 GCTCGAATGTTGCTAGAGACATATC 59.655 44.000 10.63 9.62 35.55 1.63
124 125 6.391227 TCGAATGTTGCTAGAGACATATCA 57.609 37.500 10.63 0.00 35.55 2.15
125 126 6.986250 TCGAATGTTGCTAGAGACATATCAT 58.014 36.000 10.63 0.00 35.55 2.45
126 127 7.436933 TCGAATGTTGCTAGAGACATATCATT 58.563 34.615 10.63 0.00 35.55 2.57
127 128 8.576442 TCGAATGTTGCTAGAGACATATCATTA 58.424 33.333 10.63 1.20 35.55 1.90
128 129 8.642885 CGAATGTTGCTAGAGACATATCATTAC 58.357 37.037 10.63 0.00 35.55 1.89
129 130 9.703892 GAATGTTGCTAGAGACATATCATTACT 57.296 33.333 10.63 0.00 35.55 2.24
153 154 2.218953 TGTTGACAACAGAGTCGGTC 57.781 50.000 17.02 0.00 41.41 4.79
154 155 1.478916 TGTTGACAACAGAGTCGGTCA 59.521 47.619 17.02 1.45 41.41 4.02
165 166 6.241207 ACAGAGTCGGTCAAACAAATATTG 57.759 37.500 0.00 0.00 0.00 1.90
167 168 5.003804 AGAGTCGGTCAAACAAATATTGCT 58.996 37.500 0.00 0.00 0.00 3.91
170 171 4.156008 GTCGGTCAAACAAATATTGCTCCT 59.844 41.667 0.00 0.00 0.00 3.69
173 174 5.335583 CGGTCAAACAAATATTGCTCCTCAA 60.336 40.000 0.00 0.00 39.32 3.02
176 177 5.240623 TCAAACAAATATTGCTCCTCAACGT 59.759 36.000 0.00 0.00 37.53 3.99
179 180 4.759693 ACAAATATTGCTCCTCAACGTGAA 59.240 37.500 0.00 0.00 37.53 3.18
451 470 7.627585 TGTGTGTGTCGTTAACTATCTTAAC 57.372 36.000 3.71 0.00 0.00 2.01
558 582 7.352719 ACACGAGATGTTTATGAGAAGTTTC 57.647 36.000 0.00 0.00 38.98 2.78
626 652 4.935702 TGTGTGTAGTATATTACGTGGGC 58.064 43.478 0.00 0.00 0.00 5.36
634 661 8.301720 TGTAGTATATTACGTGGGCTCAATAAG 58.698 37.037 0.00 0.00 0.00 1.73
639 666 3.688694 ACGTGGGCTCAATAAGTGTTA 57.311 42.857 0.00 0.00 0.00 2.41
667 694 9.927668 TGATGTGTATATGATATGTACTTGGTG 57.072 33.333 0.00 0.00 0.00 4.17
685 714 8.668510 ACTTGGTGCTAAATAATATCACTCTG 57.331 34.615 0.00 0.00 0.00 3.35
687 716 6.533730 TGGTGCTAAATAATATCACTCTGGG 58.466 40.000 0.00 0.00 0.00 4.45
752 781 3.942130 GGCTTTATGGCTTGAACTTGT 57.058 42.857 0.00 0.00 38.32 3.16
753 782 3.578688 GGCTTTATGGCTTGAACTTGTG 58.421 45.455 0.00 0.00 38.32 3.33
754 783 3.578688 GCTTTATGGCTTGAACTTGTGG 58.421 45.455 0.00 0.00 0.00 4.17
755 784 3.614870 GCTTTATGGCTTGAACTTGTGGG 60.615 47.826 0.00 0.00 0.00 4.61
756 785 2.969821 TATGGCTTGAACTTGTGGGT 57.030 45.000 0.00 0.00 0.00 4.51
757 786 1.620822 ATGGCTTGAACTTGTGGGTC 58.379 50.000 0.00 0.00 0.00 4.46
758 787 0.550914 TGGCTTGAACTTGTGGGTCT 59.449 50.000 0.00 0.00 31.77 3.85
759 788 1.064017 TGGCTTGAACTTGTGGGTCTT 60.064 47.619 0.00 0.00 31.77 3.01
760 789 1.609072 GGCTTGAACTTGTGGGTCTTC 59.391 52.381 0.00 0.00 31.77 2.87
761 790 2.576615 GCTTGAACTTGTGGGTCTTCT 58.423 47.619 0.00 0.00 31.77 2.85
762 791 3.496160 GGCTTGAACTTGTGGGTCTTCTA 60.496 47.826 0.00 0.00 31.77 2.10
763 792 4.327680 GCTTGAACTTGTGGGTCTTCTAT 58.672 43.478 0.00 0.00 31.77 1.98
764 793 4.762251 GCTTGAACTTGTGGGTCTTCTATT 59.238 41.667 0.00 0.00 31.77 1.73
765 794 5.241728 GCTTGAACTTGTGGGTCTTCTATTT 59.758 40.000 0.00 0.00 31.77 1.40
766 795 6.430000 GCTTGAACTTGTGGGTCTTCTATTTA 59.570 38.462 0.00 0.00 31.77 1.40
767 796 7.121315 GCTTGAACTTGTGGGTCTTCTATTTAT 59.879 37.037 0.00 0.00 31.77 1.40
768 797 8.934023 TTGAACTTGTGGGTCTTCTATTTATT 57.066 30.769 0.00 0.00 31.77 1.40
769 798 8.934023 TGAACTTGTGGGTCTTCTATTTATTT 57.066 30.769 0.00 0.00 31.77 1.40
770 799 9.362151 TGAACTTGTGGGTCTTCTATTTATTTT 57.638 29.630 0.00 0.00 31.77 1.82
815 844 8.788325 ATATTTTTAGTAAGCTCTTGGAACGT 57.212 30.769 0.00 0.00 0.00 3.99
816 845 6.930667 TTTTTAGTAAGCTCTTGGAACGTT 57.069 33.333 0.00 0.00 0.00 3.99
817 846 8.611654 ATTTTTAGTAAGCTCTTGGAACGTTA 57.388 30.769 0.00 0.00 0.00 3.18
818 847 8.436046 TTTTTAGTAAGCTCTTGGAACGTTAA 57.564 30.769 0.00 0.00 0.00 2.01
819 848 7.647907 TTTAGTAAGCTCTTGGAACGTTAAG 57.352 36.000 0.00 2.16 0.00 1.85
820 849 3.995048 AGTAAGCTCTTGGAACGTTAAGC 59.005 43.478 0.00 5.92 0.00 3.09
821 850 1.809684 AGCTCTTGGAACGTTAAGCC 58.190 50.000 0.00 0.00 0.00 4.35
822 851 1.348036 AGCTCTTGGAACGTTAAGCCT 59.652 47.619 0.00 0.00 0.00 4.58
823 852 1.732809 GCTCTTGGAACGTTAAGCCTC 59.267 52.381 0.00 0.00 0.00 4.70
824 853 2.613223 GCTCTTGGAACGTTAAGCCTCT 60.613 50.000 0.00 0.00 0.00 3.69
825 854 3.254892 CTCTTGGAACGTTAAGCCTCTC 58.745 50.000 0.00 0.00 0.00 3.20
826 855 1.993370 CTTGGAACGTTAAGCCTCTCG 59.007 52.381 0.00 0.00 0.00 4.04
827 856 1.250328 TGGAACGTTAAGCCTCTCGA 58.750 50.000 0.00 0.00 0.00 4.04
828 857 1.614903 TGGAACGTTAAGCCTCTCGAA 59.385 47.619 0.00 0.00 0.00 3.71
829 858 2.232941 TGGAACGTTAAGCCTCTCGAAT 59.767 45.455 0.00 0.00 0.00 3.34
830 859 2.603560 GGAACGTTAAGCCTCTCGAATG 59.396 50.000 0.00 0.00 0.00 2.67
831 860 3.251571 GAACGTTAAGCCTCTCGAATGT 58.748 45.455 0.00 0.00 0.00 2.71
832 861 3.314541 ACGTTAAGCCTCTCGAATGTT 57.685 42.857 0.00 0.00 0.00 2.71
833 862 3.660865 ACGTTAAGCCTCTCGAATGTTT 58.339 40.909 0.00 0.00 0.00 2.83
834 863 3.678548 ACGTTAAGCCTCTCGAATGTTTC 59.321 43.478 0.00 0.00 0.00 2.78
835 864 3.678072 CGTTAAGCCTCTCGAATGTTTCA 59.322 43.478 0.00 0.00 0.00 2.69
836 865 4.201628 CGTTAAGCCTCTCGAATGTTTCAG 60.202 45.833 0.00 0.00 0.00 3.02
837 866 1.731720 AGCCTCTCGAATGTTTCAGC 58.268 50.000 0.00 0.00 0.00 4.26
838 867 1.277557 AGCCTCTCGAATGTTTCAGCT 59.722 47.619 0.00 0.00 0.00 4.24
839 868 1.663135 GCCTCTCGAATGTTTCAGCTC 59.337 52.381 0.00 0.00 0.00 4.09
840 869 2.275318 CCTCTCGAATGTTTCAGCTCC 58.725 52.381 0.00 0.00 0.00 4.70
841 870 2.275318 CTCTCGAATGTTTCAGCTCCC 58.725 52.381 0.00 0.00 0.00 4.30
842 871 1.623311 TCTCGAATGTTTCAGCTCCCA 59.377 47.619 0.00 0.00 0.00 4.37
843 872 1.734465 CTCGAATGTTTCAGCTCCCAC 59.266 52.381 0.00 0.00 0.00 4.61
844 873 0.443869 CGAATGTTTCAGCTCCCACG 59.556 55.000 0.00 0.00 0.00 4.94
845 874 1.808411 GAATGTTTCAGCTCCCACGA 58.192 50.000 0.00 0.00 0.00 4.35
846 875 1.464997 GAATGTTTCAGCTCCCACGAC 59.535 52.381 0.00 0.00 0.00 4.34
847 876 0.670546 ATGTTTCAGCTCCCACGACG 60.671 55.000 0.00 0.00 0.00 5.12
848 877 2.357034 TTTCAGCTCCCACGACGC 60.357 61.111 0.00 0.00 0.00 5.19
849 878 3.876589 TTTCAGCTCCCACGACGCC 62.877 63.158 0.00 0.00 0.00 5.68
851 880 4.803426 CAGCTCCCACGACGCCTC 62.803 72.222 0.00 0.00 0.00 4.70
853 882 4.500116 GCTCCCACGACGCCTCTC 62.500 72.222 0.00 0.00 0.00 3.20
854 883 3.827898 CTCCCACGACGCCTCTCC 61.828 72.222 0.00 0.00 0.00 3.71
864 893 4.154347 GCCTCTCCGCCTCCTGTG 62.154 72.222 0.00 0.00 0.00 3.66
865 894 2.681778 CCTCTCCGCCTCCTGTGT 60.682 66.667 0.00 0.00 0.00 3.72
866 895 2.716017 CCTCTCCGCCTCCTGTGTC 61.716 68.421 0.00 0.00 0.00 3.67
867 896 2.680352 TCTCCGCCTCCTGTGTCC 60.680 66.667 0.00 0.00 0.00 4.02
868 897 4.135153 CTCCGCCTCCTGTGTCCG 62.135 72.222 0.00 0.00 0.00 4.79
869 898 4.671590 TCCGCCTCCTGTGTCCGA 62.672 66.667 0.00 0.00 0.00 4.55
870 899 4.135153 CCGCCTCCTGTGTCCGAG 62.135 72.222 0.00 0.00 0.00 4.63
871 900 3.374402 CGCCTCCTGTGTCCGAGT 61.374 66.667 0.00 0.00 0.00 4.18
872 901 2.262915 GCCTCCTGTGTCCGAGTG 59.737 66.667 0.00 0.00 0.00 3.51
873 902 2.574955 GCCTCCTGTGTCCGAGTGT 61.575 63.158 0.00 0.00 0.00 3.55
874 903 1.248785 GCCTCCTGTGTCCGAGTGTA 61.249 60.000 0.00 0.00 0.00 2.90
875 904 0.811915 CCTCCTGTGTCCGAGTGTAG 59.188 60.000 0.00 0.00 0.00 2.74
876 905 1.535833 CTCCTGTGTCCGAGTGTAGT 58.464 55.000 0.00 0.00 0.00 2.73
877 906 2.617276 CCTCCTGTGTCCGAGTGTAGTA 60.617 54.545 0.00 0.00 0.00 1.82
878 907 2.678836 CTCCTGTGTCCGAGTGTAGTAG 59.321 54.545 0.00 0.00 0.00 2.57
879 908 1.743958 CCTGTGTCCGAGTGTAGTAGG 59.256 57.143 0.00 0.00 0.00 3.18
880 909 2.434428 CTGTGTCCGAGTGTAGTAGGT 58.566 52.381 0.00 0.00 0.00 3.08
881 910 2.156917 TGTGTCCGAGTGTAGTAGGTG 58.843 52.381 0.00 0.00 0.00 4.00
882 911 2.224597 TGTGTCCGAGTGTAGTAGGTGA 60.225 50.000 0.00 0.00 0.00 4.02
883 912 2.419324 GTGTCCGAGTGTAGTAGGTGAG 59.581 54.545 0.00 0.00 0.00 3.51
884 913 2.015587 GTCCGAGTGTAGTAGGTGAGG 58.984 57.143 0.00 0.00 0.00 3.86
885 914 0.739561 CCGAGTGTAGTAGGTGAGGC 59.260 60.000 0.00 0.00 0.00 4.70
886 915 0.739561 CGAGTGTAGTAGGTGAGGCC 59.260 60.000 0.00 0.00 37.58 5.19
887 916 0.739561 GAGTGTAGTAGGTGAGGCCG 59.260 60.000 0.00 0.00 43.70 6.13
888 917 0.330604 AGTGTAGTAGGTGAGGCCGA 59.669 55.000 0.00 0.00 43.70 5.54
889 918 0.455005 GTGTAGTAGGTGAGGCCGAC 59.545 60.000 0.00 0.00 43.70 4.79
892 921 2.893398 GTAGGTGAGGCCGACTGG 59.107 66.667 0.00 0.00 43.70 4.00
893 922 1.982938 GTAGGTGAGGCCGACTGGT 60.983 63.158 0.00 0.00 43.70 4.00
894 923 1.982395 TAGGTGAGGCCGACTGGTG 60.982 63.158 0.00 0.00 43.70 4.17
895 924 4.394712 GGTGAGGCCGACTGGTGG 62.395 72.222 0.00 0.00 37.67 4.61
896 925 4.394712 GTGAGGCCGACTGGTGGG 62.395 72.222 0.00 0.00 37.67 4.61
897 926 4.631740 TGAGGCCGACTGGTGGGA 62.632 66.667 5.97 0.00 37.67 4.37
898 927 3.319198 GAGGCCGACTGGTGGGAA 61.319 66.667 5.97 0.00 37.67 3.97
899 928 2.852075 AGGCCGACTGGTGGGAAA 60.852 61.111 5.97 0.00 37.67 3.13
900 929 2.114411 GGCCGACTGGTGGGAAAA 59.886 61.111 5.97 0.00 37.67 2.29
901 930 1.304134 GGCCGACTGGTGGGAAAAT 60.304 57.895 5.97 0.00 37.67 1.82
902 931 1.595093 GGCCGACTGGTGGGAAAATG 61.595 60.000 5.97 0.00 37.67 2.32
903 932 0.893727 GCCGACTGGTGGGAAAATGT 60.894 55.000 5.97 0.00 37.67 2.71
904 933 1.616159 CCGACTGGTGGGAAAATGTT 58.384 50.000 0.00 0.00 0.00 2.71
905 934 1.539827 CCGACTGGTGGGAAAATGTTC 59.460 52.381 0.00 0.00 0.00 3.18
906 935 1.196808 CGACTGGTGGGAAAATGTTCG 59.803 52.381 0.00 0.00 34.28 3.95
907 936 2.500229 GACTGGTGGGAAAATGTTCGA 58.500 47.619 0.00 0.00 34.28 3.71
908 937 2.484264 GACTGGTGGGAAAATGTTCGAG 59.516 50.000 0.00 0.00 34.28 4.04
909 938 2.158667 ACTGGTGGGAAAATGTTCGAGT 60.159 45.455 0.00 0.00 34.28 4.18
910 939 2.226330 TGGTGGGAAAATGTTCGAGTG 58.774 47.619 0.00 0.00 34.28 3.51
911 940 1.539827 GGTGGGAAAATGTTCGAGTGG 59.460 52.381 0.00 0.00 34.28 4.00
912 941 1.068541 GTGGGAAAATGTTCGAGTGGC 60.069 52.381 0.00 0.00 34.28 5.01
913 942 1.202879 TGGGAAAATGTTCGAGTGGCT 60.203 47.619 0.00 0.00 34.28 4.75
914 943 1.200020 GGGAAAATGTTCGAGTGGCTG 59.800 52.381 0.00 0.00 34.28 4.85
915 944 1.200020 GGAAAATGTTCGAGTGGCTGG 59.800 52.381 0.00 0.00 34.28 4.85
916 945 2.151202 GAAAATGTTCGAGTGGCTGGA 58.849 47.619 0.00 0.00 0.00 3.86
917 946 1.523758 AAATGTTCGAGTGGCTGGAC 58.476 50.000 0.00 0.00 0.00 4.02
918 947 0.321653 AATGTTCGAGTGGCTGGACC 60.322 55.000 0.00 0.00 39.84 4.46
919 948 2.432628 GTTCGAGTGGCTGGACCG 60.433 66.667 0.00 0.00 43.94 4.79
920 949 2.915659 TTCGAGTGGCTGGACCGT 60.916 61.111 0.00 0.00 43.94 4.83
921 950 1.604308 TTCGAGTGGCTGGACCGTA 60.604 57.895 0.00 0.00 43.94 4.02
922 951 0.968901 TTCGAGTGGCTGGACCGTAT 60.969 55.000 0.00 0.00 43.94 3.06
923 952 1.065928 CGAGTGGCTGGACCGTATC 59.934 63.158 0.00 0.00 43.94 2.24
939 968 4.513777 TCCGAGTGGATATCCCGG 57.486 61.111 24.33 24.33 40.17 5.73
940 969 1.228769 TCCGAGTGGATATCCCGGG 60.229 63.158 27.53 16.85 40.17 5.73
941 970 2.283529 CCGAGTGGATATCCCGGGG 61.284 68.421 23.50 6.77 35.56 5.73
942 971 1.533273 CGAGTGGATATCCCGGGGT 60.533 63.158 23.50 18.63 37.93 4.95
943 972 1.816863 CGAGTGGATATCCCGGGGTG 61.817 65.000 23.50 0.00 37.93 4.61
944 973 2.113243 GAGTGGATATCCCGGGGTGC 62.113 65.000 23.50 13.21 37.93 5.01
945 974 3.238497 TGGATATCCCGGGGTGCG 61.238 66.667 23.50 0.00 37.93 5.34
946 975 3.239253 GGATATCCCGGGGTGCGT 61.239 66.667 23.50 3.83 0.00 5.24
947 976 1.909781 GGATATCCCGGGGTGCGTA 60.910 63.158 23.50 0.00 0.00 4.42
948 977 1.262640 GGATATCCCGGGGTGCGTAT 61.263 60.000 23.50 8.14 0.00 3.06
949 978 0.175073 GATATCCCGGGGTGCGTATC 59.825 60.000 23.50 9.87 0.00 2.24
950 979 1.262640 ATATCCCGGGGTGCGTATCC 61.263 60.000 23.50 0.00 0.00 2.59
953 982 3.840594 CCGGGGTGCGTATCCGAA 61.841 66.667 16.89 0.00 45.96 4.30
954 983 2.420043 CGGGGTGCGTATCCGAAT 59.580 61.111 11.53 0.00 45.96 3.34
955 984 1.954146 CGGGGTGCGTATCCGAATG 60.954 63.158 11.53 0.00 45.96 2.67
956 985 2.251642 GGGGTGCGTATCCGAATGC 61.252 63.158 0.00 0.00 35.63 3.56
957 986 2.594962 GGGTGCGTATCCGAATGCG 61.595 63.158 0.00 0.00 42.99 4.73
961 990 2.539503 CGTATCCGAATGCGCGTG 59.460 61.111 8.43 0.00 34.25 5.34
962 991 2.228241 CGTATCCGAATGCGCGTGT 61.228 57.895 8.43 0.00 34.25 4.49
963 992 1.272715 GTATCCGAATGCGCGTGTG 59.727 57.895 8.43 0.00 35.83 3.82
964 993 1.880796 TATCCGAATGCGCGTGTGG 60.881 57.895 8.43 8.62 35.83 4.17
965 994 2.566057 TATCCGAATGCGCGTGTGGT 62.566 55.000 17.21 9.39 35.83 4.16
966 995 3.722295 CCGAATGCGCGTGTGGTT 61.722 61.111 8.43 0.00 35.83 3.67
967 996 2.202171 CGAATGCGCGTGTGGTTC 60.202 61.111 8.43 4.62 0.00 3.62
968 997 2.202171 GAATGCGCGTGTGGTTCG 60.202 61.111 8.43 0.00 0.00 3.95
969 998 3.645157 GAATGCGCGTGTGGTTCGG 62.645 63.158 8.43 0.00 0.00 4.30
970 999 4.673298 ATGCGCGTGTGGTTCGGA 62.673 61.111 8.43 0.00 0.00 4.55
973 1002 3.103911 CGCGTGTGGTTCGGAGAC 61.104 66.667 0.00 0.00 34.32 3.36
974 1003 2.737376 GCGTGTGGTTCGGAGACC 60.737 66.667 3.36 3.36 34.32 3.85
975 1004 3.048602 CGTGTGGTTCGGAGACCT 58.951 61.111 9.64 0.00 34.32 3.85
976 1005 1.366366 CGTGTGGTTCGGAGACCTT 59.634 57.895 9.64 0.00 34.32 3.50
977 1006 0.666577 CGTGTGGTTCGGAGACCTTC 60.667 60.000 9.64 5.29 34.32 3.46
978 1007 0.320508 GTGTGGTTCGGAGACCTTCC 60.321 60.000 9.64 0.00 43.04 3.46
988 1017 2.648059 GGAGACCTTCCAATGATGGTG 58.352 52.381 5.01 0.00 46.13 4.17
989 1018 2.025887 GGAGACCTTCCAATGATGGTGT 60.026 50.000 5.01 1.47 46.13 4.16
990 1019 3.274288 GAGACCTTCCAATGATGGTGTC 58.726 50.000 5.01 6.88 46.13 3.67
991 1020 2.009774 GACCTTCCAATGATGGTGTCG 58.990 52.381 5.01 0.00 46.13 4.35
992 1021 1.340017 ACCTTCCAATGATGGTGTCGG 60.340 52.381 0.00 0.00 44.87 4.79
993 1022 4.594558 ACCTTCCAATGATGGTGTCGGG 62.595 54.545 0.00 0.00 44.87 5.14
994 1023 3.513225 CCAATGATGGTGTCGGGC 58.487 61.111 0.00 0.00 42.18 6.13
995 1024 2.120909 CCAATGATGGTGTCGGGCC 61.121 63.158 0.00 0.00 42.18 5.80
996 1025 2.120909 CAATGATGGTGTCGGGCCC 61.121 63.158 13.57 13.57 0.00 5.80
997 1026 2.308722 AATGATGGTGTCGGGCCCT 61.309 57.895 22.43 0.00 0.00 5.19
998 1027 0.986019 AATGATGGTGTCGGGCCCTA 60.986 55.000 22.43 5.87 0.00 3.53
999 1028 1.410850 ATGATGGTGTCGGGCCCTAG 61.411 60.000 22.43 5.01 0.00 3.02
1000 1029 1.760875 GATGGTGTCGGGCCCTAGA 60.761 63.158 22.43 7.94 0.00 2.43
1001 1030 1.074471 ATGGTGTCGGGCCCTAGAT 60.074 57.895 22.43 0.00 0.00 1.98
1002 1031 1.410850 ATGGTGTCGGGCCCTAGATG 61.411 60.000 22.43 3.20 0.00 2.90
1003 1032 2.808206 GGTGTCGGGCCCTAGATGG 61.808 68.421 22.43 2.32 0.00 3.51
1015 1044 3.971245 CCTAGATGGGCCTTAGATGTC 57.029 52.381 4.53 0.00 0.00 3.06
1016 1045 3.242867 CCTAGATGGGCCTTAGATGTCA 58.757 50.000 4.53 0.00 0.00 3.58
1017 1046 3.260380 CCTAGATGGGCCTTAGATGTCAG 59.740 52.174 4.53 0.00 0.00 3.51
1018 1047 2.053244 AGATGGGCCTTAGATGTCAGG 58.947 52.381 4.53 0.00 0.00 3.86
1019 1048 1.771255 GATGGGCCTTAGATGTCAGGT 59.229 52.381 4.53 0.00 32.06 4.00
1020 1049 1.204146 TGGGCCTTAGATGTCAGGTC 58.796 55.000 4.53 0.00 33.59 3.85
1022 1051 1.204146 GGCCTTAGATGTCAGGTCCA 58.796 55.000 0.00 0.00 32.06 4.02
1023 1052 1.771255 GGCCTTAGATGTCAGGTCCAT 59.229 52.381 0.00 0.00 32.06 3.41
1024 1053 2.486191 GGCCTTAGATGTCAGGTCCATG 60.486 54.545 0.00 0.00 32.06 3.66
1025 1054 2.486191 GCCTTAGATGTCAGGTCCATGG 60.486 54.545 4.97 4.97 32.06 3.66
1026 1055 2.486191 CCTTAGATGTCAGGTCCATGGC 60.486 54.545 6.96 1.78 0.00 4.40
1027 1056 1.131638 TAGATGTCAGGTCCATGGCC 58.868 55.000 6.96 12.06 0.00 5.36
1028 1057 1.152881 GATGTCAGGTCCATGGCCC 60.153 63.158 18.29 12.57 0.00 5.80
1029 1058 1.620589 ATGTCAGGTCCATGGCCCT 60.621 57.895 9.04 9.04 0.00 5.19
1030 1059 0.327480 ATGTCAGGTCCATGGCCCTA 60.327 55.000 15.49 0.00 0.00 3.53
1031 1060 1.271840 TGTCAGGTCCATGGCCCTAC 61.272 60.000 15.49 13.30 0.00 3.18
1032 1061 1.692749 TCAGGTCCATGGCCCTACC 60.693 63.158 15.49 13.25 39.84 3.18
1076 1107 8.137437 TCTGTTTTTATTTGGCAGAAAGAAGAG 58.863 33.333 0.00 0.00 33.84 2.85
1184 1215 6.214615 TCAAGGATGAAATAGTTGTACCCAGA 59.785 38.462 0.00 0.00 30.99 3.86
1340 1374 7.384477 TCATTTCATGTTGCATTGAACCATTA 58.616 30.769 6.72 0.00 31.87 1.90
1371 1408 9.927081 ATCCACTCATTTCTAAATCTGGTTTAT 57.073 29.630 0.00 0.00 32.12 1.40
1570 1613 6.909550 AATCTGGCACCAAACTTGTTATAA 57.090 33.333 0.00 0.00 0.00 0.98
1678 1723 2.591923 TGCACCACAGGATTTAAGCAA 58.408 42.857 0.00 0.00 0.00 3.91
1759 1804 2.092968 AGAGGTGTCTTCAGTTGTTGCA 60.093 45.455 0.00 0.00 0.00 4.08
1802 1848 8.985315 TCTGTCTATCATAGAAAATGGCAAAT 57.015 30.769 0.00 0.00 36.40 2.32
1915 1962 8.113462 AGCCCTTTTAATAAGTATCCAAGACAA 58.887 33.333 0.00 0.00 0.00 3.18
1924 1971 5.867903 AGTATCCAAGACAAGGAGATGAG 57.132 43.478 0.00 0.00 38.83 2.90
1940 1987 7.694093 AGGAGATGAGTGGATAAGAAAAGTTT 58.306 34.615 0.00 0.00 0.00 2.66
1942 1989 7.148171 GGAGATGAGTGGATAAGAAAAGTTTGG 60.148 40.741 0.00 0.00 0.00 3.28
1943 1990 7.461749 AGATGAGTGGATAAGAAAAGTTTGGA 58.538 34.615 0.00 0.00 0.00 3.53
1944 1991 8.112183 AGATGAGTGGATAAGAAAAGTTTGGAT 58.888 33.333 0.00 0.00 0.00 3.41
1945 1992 9.396022 GATGAGTGGATAAGAAAAGTTTGGATA 57.604 33.333 0.00 0.00 0.00 2.59
1946 1993 9.753674 ATGAGTGGATAAGAAAAGTTTGGATAA 57.246 29.630 0.00 0.00 0.00 1.75
1947 1994 9.231297 TGAGTGGATAAGAAAAGTTTGGATAAG 57.769 33.333 0.00 0.00 0.00 1.73
1948 1995 9.449719 GAGTGGATAAGAAAAGTTTGGATAAGA 57.550 33.333 0.00 0.00 0.00 2.10
1949 1996 9.807921 AGTGGATAAGAAAAGTTTGGATAAGAA 57.192 29.630 0.00 0.00 0.00 2.52
1971 2018 8.567285 AGAAAAGTAGGAATACATCACTTTGG 57.433 34.615 0.00 0.00 38.92 3.28
2001 2048 3.149196 GCAGAAGATTTCACCCTTCACA 58.851 45.455 0.00 0.00 40.78 3.58
2024 2071 3.434596 GCTTAAATCAAGGGGTATCGGGT 60.435 47.826 0.00 0.00 34.56 5.28
2071 2118 3.353557 AGCTGGAGTGTTGAGTATCGTA 58.646 45.455 0.00 0.00 38.61 3.43
2126 2175 7.865706 ATTATTCTACCTTGCCTTGTACTTG 57.134 36.000 0.00 0.00 0.00 3.16
2194 2253 4.215399 ACAATACAACGACAATTCCACCAG 59.785 41.667 0.00 0.00 0.00 4.00
2199 2258 1.142060 ACGACAATTCCACCAGAACCA 59.858 47.619 0.00 0.00 37.29 3.67
2343 2403 2.054453 GTACCTAGGGTTCGGCCGT 61.054 63.158 27.15 7.91 37.09 5.68
2380 2441 4.500127 GTCTGCCCTAGAGAGTCTTTTTC 58.500 47.826 0.00 0.00 35.70 2.29
2551 2615 1.663739 CTTCTTCACCGACCCGACA 59.336 57.895 0.00 0.00 0.00 4.35
2764 2830 3.322466 CCTGCTTCACCCCGACCT 61.322 66.667 0.00 0.00 0.00 3.85
2799 2865 1.526917 GTGGCGGCCAATCATAGCT 60.527 57.895 25.70 0.00 34.18 3.32
2808 2874 0.466739 CAATCATAGCTGCCCTGCCA 60.467 55.000 0.00 0.00 0.00 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.310382 CCATCCACCACAAAAATAATAACTTCA 58.690 33.333 0.00 0.00 0.00 3.02
1 2 7.277760 GCCATCCACCACAAAAATAATAACTTC 59.722 37.037 0.00 0.00 0.00 3.01
4 5 6.639563 AGCCATCCACCACAAAAATAATAAC 58.360 36.000 0.00 0.00 0.00 1.89
7 8 7.092935 ACAATAGCCATCCACCACAAAAATAAT 60.093 33.333 0.00 0.00 0.00 1.28
8 9 6.212388 ACAATAGCCATCCACCACAAAAATAA 59.788 34.615 0.00 0.00 0.00 1.40
9 10 5.719085 ACAATAGCCATCCACCACAAAAATA 59.281 36.000 0.00 0.00 0.00 1.40
10 11 4.531732 ACAATAGCCATCCACCACAAAAAT 59.468 37.500 0.00 0.00 0.00 1.82
11 12 3.900601 ACAATAGCCATCCACCACAAAAA 59.099 39.130 0.00 0.00 0.00 1.94
12 13 3.257873 CACAATAGCCATCCACCACAAAA 59.742 43.478 0.00 0.00 0.00 2.44
13 14 2.824936 CACAATAGCCATCCACCACAAA 59.175 45.455 0.00 0.00 0.00 2.83
14 15 2.445427 CACAATAGCCATCCACCACAA 58.555 47.619 0.00 0.00 0.00 3.33
15 16 1.954733 GCACAATAGCCATCCACCACA 60.955 52.381 0.00 0.00 0.00 4.17
16 17 0.740737 GCACAATAGCCATCCACCAC 59.259 55.000 0.00 0.00 0.00 4.16
17 18 0.330941 TGCACAATAGCCATCCACCA 59.669 50.000 0.00 0.00 0.00 4.17
18 19 1.027357 CTGCACAATAGCCATCCACC 58.973 55.000 0.00 0.00 0.00 4.61
19 20 1.402968 CACTGCACAATAGCCATCCAC 59.597 52.381 0.00 0.00 0.00 4.02
20 21 1.281577 TCACTGCACAATAGCCATCCA 59.718 47.619 0.00 0.00 0.00 3.41
21 22 1.672881 GTCACTGCACAATAGCCATCC 59.327 52.381 0.00 0.00 0.00 3.51
22 23 1.672881 GGTCACTGCACAATAGCCATC 59.327 52.381 0.00 0.00 0.00 3.51
23 24 1.004628 TGGTCACTGCACAATAGCCAT 59.995 47.619 0.00 0.00 0.00 4.40
24 25 0.399833 TGGTCACTGCACAATAGCCA 59.600 50.000 0.00 0.00 0.00 4.75
25 26 1.533625 TTGGTCACTGCACAATAGCC 58.466 50.000 0.00 0.00 0.00 3.93
26 27 3.855689 ATTTGGTCACTGCACAATAGC 57.144 42.857 0.00 0.00 0.00 2.97
27 28 5.771469 TCAAATTTGGTCACTGCACAATAG 58.229 37.500 17.90 0.00 0.00 1.73
28 29 5.781210 TCAAATTTGGTCACTGCACAATA 57.219 34.783 17.90 0.00 0.00 1.90
29 30 4.669206 TCAAATTTGGTCACTGCACAAT 57.331 36.364 17.90 0.00 0.00 2.71
30 31 4.081752 ACTTCAAATTTGGTCACTGCACAA 60.082 37.500 17.90 0.51 0.00 3.33
31 32 3.446873 ACTTCAAATTTGGTCACTGCACA 59.553 39.130 17.90 0.00 0.00 4.57
32 33 4.045636 ACTTCAAATTTGGTCACTGCAC 57.954 40.909 17.90 0.00 0.00 4.57
33 34 4.734398 AACTTCAAATTTGGTCACTGCA 57.266 36.364 17.90 0.00 0.00 4.41
34 35 8.986477 ATAATAACTTCAAATTTGGTCACTGC 57.014 30.769 17.90 0.00 0.00 4.40
46 47 9.535878 GTTCACCACCAAAATAATAACTTCAAA 57.464 29.630 0.00 0.00 0.00 2.69
47 48 8.919145 AGTTCACCACCAAAATAATAACTTCAA 58.081 29.630 0.00 0.00 0.00 2.69
48 49 8.472007 AGTTCACCACCAAAATAATAACTTCA 57.528 30.769 0.00 0.00 0.00 3.02
51 52 9.185680 GGATAGTTCACCACCAAAATAATAACT 57.814 33.333 0.00 0.00 0.00 2.24
52 53 8.410912 GGGATAGTTCACCACCAAAATAATAAC 58.589 37.037 0.00 0.00 0.00 1.89
53 54 8.340757 AGGGATAGTTCACCACCAAAATAATAA 58.659 33.333 0.00 0.00 0.00 1.40
54 55 7.878495 AGGGATAGTTCACCACCAAAATAATA 58.122 34.615 0.00 0.00 0.00 0.98
55 56 6.741724 AGGGATAGTTCACCACCAAAATAAT 58.258 36.000 0.00 0.00 0.00 1.28
56 57 6.147437 AGGGATAGTTCACCACCAAAATAA 57.853 37.500 0.00 0.00 0.00 1.40
57 58 5.628200 CGAGGGATAGTTCACCACCAAAATA 60.628 44.000 0.00 0.00 0.00 1.40
58 59 4.600062 GAGGGATAGTTCACCACCAAAAT 58.400 43.478 0.00 0.00 0.00 1.82
59 60 3.558321 CGAGGGATAGTTCACCACCAAAA 60.558 47.826 0.00 0.00 0.00 2.44
60 61 2.027561 CGAGGGATAGTTCACCACCAAA 60.028 50.000 0.00 0.00 0.00 3.28
61 62 1.553248 CGAGGGATAGTTCACCACCAA 59.447 52.381 0.00 0.00 0.00 3.67
62 63 1.191535 CGAGGGATAGTTCACCACCA 58.808 55.000 0.00 0.00 0.00 4.17
63 64 1.409427 CTCGAGGGATAGTTCACCACC 59.591 57.143 3.91 0.00 0.00 4.61
64 65 2.376109 TCTCGAGGGATAGTTCACCAC 58.624 52.381 13.56 0.00 0.00 4.16
65 66 2.820728 TCTCGAGGGATAGTTCACCA 57.179 50.000 13.56 0.00 0.00 4.17
66 67 4.342665 AGAAATCTCGAGGGATAGTTCACC 59.657 45.833 13.56 0.00 0.00 4.02
67 68 5.523438 AGAAATCTCGAGGGATAGTTCAC 57.477 43.478 13.56 0.00 0.00 3.18
68 69 6.546428 AAAGAAATCTCGAGGGATAGTTCA 57.454 37.500 13.56 0.00 0.00 3.18
69 70 7.334671 ACAAAAAGAAATCTCGAGGGATAGTTC 59.665 37.037 13.56 8.19 0.00 3.01
70 71 7.168905 ACAAAAAGAAATCTCGAGGGATAGTT 58.831 34.615 13.56 0.00 0.00 2.24
71 72 6.712276 ACAAAAAGAAATCTCGAGGGATAGT 58.288 36.000 13.56 0.00 0.00 2.12
72 73 7.414540 CCAACAAAAAGAAATCTCGAGGGATAG 60.415 40.741 13.56 0.00 0.00 2.08
73 74 6.374333 CCAACAAAAAGAAATCTCGAGGGATA 59.626 38.462 13.56 0.00 0.00 2.59
74 75 5.183904 CCAACAAAAAGAAATCTCGAGGGAT 59.816 40.000 13.56 0.00 0.00 3.85
75 76 4.518970 CCAACAAAAAGAAATCTCGAGGGA 59.481 41.667 13.56 0.00 0.00 4.20
76 77 4.321230 CCCAACAAAAAGAAATCTCGAGGG 60.321 45.833 13.56 0.00 0.00 4.30
77 78 4.798574 CCCAACAAAAAGAAATCTCGAGG 58.201 43.478 13.56 0.00 0.00 4.63
78 79 4.022849 AGCCCAACAAAAAGAAATCTCGAG 60.023 41.667 5.93 5.93 0.00 4.04
79 80 3.888930 AGCCCAACAAAAAGAAATCTCGA 59.111 39.130 0.00 0.00 0.00 4.04
80 81 4.229876 GAGCCCAACAAAAAGAAATCTCG 58.770 43.478 0.00 0.00 0.00 4.04
81 82 4.023193 TCGAGCCCAACAAAAAGAAATCTC 60.023 41.667 0.00 0.00 0.00 2.75
82 83 3.888930 TCGAGCCCAACAAAAAGAAATCT 59.111 39.130 0.00 0.00 0.00 2.40
83 84 4.237349 TCGAGCCCAACAAAAAGAAATC 57.763 40.909 0.00 0.00 0.00 2.17
84 85 4.664150 TTCGAGCCCAACAAAAAGAAAT 57.336 36.364 0.00 0.00 0.00 2.17
85 86 4.142049 ACATTCGAGCCCAACAAAAAGAAA 60.142 37.500 0.00 0.00 0.00 2.52
86 87 3.383185 ACATTCGAGCCCAACAAAAAGAA 59.617 39.130 0.00 0.00 0.00 2.52
87 88 2.955660 ACATTCGAGCCCAACAAAAAGA 59.044 40.909 0.00 0.00 0.00 2.52
88 89 3.369546 ACATTCGAGCCCAACAAAAAG 57.630 42.857 0.00 0.00 0.00 2.27
89 90 3.452474 CAACATTCGAGCCCAACAAAAA 58.548 40.909 0.00 0.00 0.00 1.94
90 91 2.801342 GCAACATTCGAGCCCAACAAAA 60.801 45.455 0.00 0.00 0.00 2.44
91 92 1.269517 GCAACATTCGAGCCCAACAAA 60.270 47.619 0.00 0.00 0.00 2.83
92 93 0.313672 GCAACATTCGAGCCCAACAA 59.686 50.000 0.00 0.00 0.00 2.83
93 94 0.537143 AGCAACATTCGAGCCCAACA 60.537 50.000 0.00 0.00 0.00 3.33
94 95 1.398390 CTAGCAACATTCGAGCCCAAC 59.602 52.381 0.00 0.00 0.00 3.77
95 96 1.277842 TCTAGCAACATTCGAGCCCAA 59.722 47.619 0.00 0.00 0.00 4.12
96 97 0.901827 TCTAGCAACATTCGAGCCCA 59.098 50.000 0.00 0.00 0.00 5.36
97 98 1.137086 TCTCTAGCAACATTCGAGCCC 59.863 52.381 0.00 0.00 0.00 5.19
98 99 2.197577 GTCTCTAGCAACATTCGAGCC 58.802 52.381 0.00 0.00 0.00 4.70
99 100 2.881074 TGTCTCTAGCAACATTCGAGC 58.119 47.619 0.00 0.00 0.00 5.03
100 101 6.442112 TGATATGTCTCTAGCAACATTCGAG 58.558 40.000 13.03 0.00 37.33 4.04
101 102 6.391227 TGATATGTCTCTAGCAACATTCGA 57.609 37.500 13.03 0.00 37.33 3.71
102 103 7.649370 AATGATATGTCTCTAGCAACATTCG 57.351 36.000 13.03 0.00 37.33 3.34
103 104 9.703892 AGTAATGATATGTCTCTAGCAACATTC 57.296 33.333 13.03 11.07 37.33 2.67
134 135 1.478916 TGACCGACTCTGTTGTCAACA 59.521 47.619 17.29 17.29 39.52 3.33
135 136 2.218953 TGACCGACTCTGTTGTCAAC 57.781 50.000 8.86 8.86 36.82 3.18
136 137 2.933906 GTTTGACCGACTCTGTTGTCAA 59.066 45.455 10.50 10.50 36.82 3.18
137 138 2.093921 TGTTTGACCGACTCTGTTGTCA 60.094 45.455 0.00 0.00 36.82 3.58
138 139 2.546778 TGTTTGACCGACTCTGTTGTC 58.453 47.619 0.00 0.00 0.00 3.18
139 140 2.684001 TGTTTGACCGACTCTGTTGT 57.316 45.000 0.00 0.00 0.00 3.32
140 141 4.552166 ATTTGTTTGACCGACTCTGTTG 57.448 40.909 0.00 0.00 0.00 3.33
141 142 6.668323 CAATATTTGTTTGACCGACTCTGTT 58.332 36.000 0.00 0.00 0.00 3.16
142 143 5.334879 GCAATATTTGTTTGACCGACTCTGT 60.335 40.000 0.00 0.00 0.00 3.41
143 144 5.088739 GCAATATTTGTTTGACCGACTCTG 58.911 41.667 0.00 0.00 0.00 3.35
144 145 5.003804 AGCAATATTTGTTTGACCGACTCT 58.996 37.500 0.00 0.00 0.00 3.24
145 146 5.296813 AGCAATATTTGTTTGACCGACTC 57.703 39.130 0.00 0.00 0.00 3.36
146 147 4.156008 GGAGCAATATTTGTTTGACCGACT 59.844 41.667 0.00 0.00 0.00 4.18
147 148 4.156008 AGGAGCAATATTTGTTTGACCGAC 59.844 41.667 0.00 0.00 31.83 4.79
148 149 4.331968 AGGAGCAATATTTGTTTGACCGA 58.668 39.130 0.00 0.00 31.83 4.69
149 150 4.155826 TGAGGAGCAATATTTGTTTGACCG 59.844 41.667 0.00 0.00 31.83 4.79
150 151 5.643379 TGAGGAGCAATATTTGTTTGACC 57.357 39.130 0.00 0.00 0.00 4.02
151 152 5.569059 CGTTGAGGAGCAATATTTGTTTGAC 59.431 40.000 0.00 0.00 39.03 3.18
152 153 5.240623 ACGTTGAGGAGCAATATTTGTTTGA 59.759 36.000 0.00 0.00 39.03 2.69
153 154 5.343058 CACGTTGAGGAGCAATATTTGTTTG 59.657 40.000 0.00 0.00 39.03 2.93
154 155 5.240623 TCACGTTGAGGAGCAATATTTGTTT 59.759 36.000 0.00 0.00 39.03 2.83
509 533 9.937175 GTACTCCAGATTTTTCTATTTGTATGC 57.063 33.333 0.00 0.00 0.00 3.14
513 537 7.876068 TCGTGTACTCCAGATTTTTCTATTTGT 59.124 33.333 0.00 0.00 0.00 2.83
558 582 8.928270 AAGAAGAGTGTCAATTATTAGGTACG 57.072 34.615 0.00 0.00 0.00 3.67
613 638 7.058023 ACACTTATTGAGCCCACGTAATATA 57.942 36.000 0.00 0.00 0.00 0.86
667 694 9.425577 GTCTTACCCAGAGTGATATTATTTAGC 57.574 37.037 0.00 0.00 29.34 3.09
685 714 6.528321 AGTTGTACTAAAGGTTGTCTTACCC 58.472 40.000 0.00 0.00 39.08 3.69
687 716 8.429493 ACAAGTTGTACTAAAGGTTGTCTTAC 57.571 34.615 6.75 0.00 34.78 2.34
733 762 3.578688 CCACAAGTTCAAGCCATAAAGC 58.421 45.455 0.00 0.00 0.00 3.51
737 766 2.375174 AGACCCACAAGTTCAAGCCATA 59.625 45.455 0.00 0.00 0.00 2.74
738 767 1.145738 AGACCCACAAGTTCAAGCCAT 59.854 47.619 0.00 0.00 0.00 4.40
739 768 0.550914 AGACCCACAAGTTCAAGCCA 59.449 50.000 0.00 0.00 0.00 4.75
740 769 1.609072 GAAGACCCACAAGTTCAAGCC 59.391 52.381 0.00 0.00 0.00 4.35
741 770 2.576615 AGAAGACCCACAAGTTCAAGC 58.423 47.619 0.00 0.00 0.00 4.01
742 771 6.884280 AAATAGAAGACCCACAAGTTCAAG 57.116 37.500 0.00 0.00 0.00 3.02
743 772 8.934023 AATAAATAGAAGACCCACAAGTTCAA 57.066 30.769 0.00 0.00 0.00 2.69
744 773 8.934023 AAATAAATAGAAGACCCACAAGTTCA 57.066 30.769 0.00 0.00 0.00 3.18
789 818 9.880157 ACGTTCCAAGAGCTTACTAAAAATATA 57.120 29.630 0.00 0.00 0.00 0.86
790 819 8.788325 ACGTTCCAAGAGCTTACTAAAAATAT 57.212 30.769 0.00 0.00 0.00 1.28
791 820 8.611654 AACGTTCCAAGAGCTTACTAAAAATA 57.388 30.769 0.00 0.00 0.00 1.40
792 821 7.506328 AACGTTCCAAGAGCTTACTAAAAAT 57.494 32.000 0.00 0.00 0.00 1.82
793 822 6.930667 AACGTTCCAAGAGCTTACTAAAAA 57.069 33.333 0.00 0.00 0.00 1.94
794 823 7.307573 GCTTAACGTTCCAAGAGCTTACTAAAA 60.308 37.037 13.71 0.00 0.00 1.52
795 824 6.146673 GCTTAACGTTCCAAGAGCTTACTAAA 59.853 38.462 13.71 0.00 0.00 1.85
796 825 5.636543 GCTTAACGTTCCAAGAGCTTACTAA 59.363 40.000 13.71 0.00 0.00 2.24
797 826 5.166398 GCTTAACGTTCCAAGAGCTTACTA 58.834 41.667 13.71 0.00 0.00 1.82
798 827 3.995048 GCTTAACGTTCCAAGAGCTTACT 59.005 43.478 13.71 0.00 0.00 2.24
799 828 3.124806 GGCTTAACGTTCCAAGAGCTTAC 59.875 47.826 13.71 0.00 0.00 2.34
800 829 3.007614 AGGCTTAACGTTCCAAGAGCTTA 59.992 43.478 13.71 0.00 0.00 3.09
801 830 2.152016 GGCTTAACGTTCCAAGAGCTT 58.848 47.619 13.71 0.00 0.00 3.74
802 831 1.348036 AGGCTTAACGTTCCAAGAGCT 59.652 47.619 13.71 0.00 0.00 4.09
803 832 1.732809 GAGGCTTAACGTTCCAAGAGC 59.267 52.381 13.71 11.80 0.00 4.09
804 833 3.254892 GAGAGGCTTAACGTTCCAAGAG 58.745 50.000 13.71 3.75 0.00 2.85
805 834 2.352421 CGAGAGGCTTAACGTTCCAAGA 60.352 50.000 13.71 0.00 0.00 3.02
806 835 1.993370 CGAGAGGCTTAACGTTCCAAG 59.007 52.381 2.82 5.12 0.00 3.61
807 836 1.614903 TCGAGAGGCTTAACGTTCCAA 59.385 47.619 2.82 0.00 0.00 3.53
808 837 1.250328 TCGAGAGGCTTAACGTTCCA 58.750 50.000 2.82 0.00 0.00 3.53
809 838 2.358939 TTCGAGAGGCTTAACGTTCC 57.641 50.000 2.82 0.00 0.00 3.62
810 839 3.251571 ACATTCGAGAGGCTTAACGTTC 58.748 45.455 2.82 0.00 0.00 3.95
811 840 3.314541 ACATTCGAGAGGCTTAACGTT 57.685 42.857 5.88 5.88 0.00 3.99
812 841 3.314541 AACATTCGAGAGGCTTAACGT 57.685 42.857 0.00 0.00 0.00 3.99
813 842 3.678072 TGAAACATTCGAGAGGCTTAACG 59.322 43.478 0.00 0.00 0.00 3.18
814 843 4.436183 GCTGAAACATTCGAGAGGCTTAAC 60.436 45.833 0.00 0.00 0.00 2.01
815 844 3.684788 GCTGAAACATTCGAGAGGCTTAA 59.315 43.478 0.00 0.00 0.00 1.85
816 845 3.055819 AGCTGAAACATTCGAGAGGCTTA 60.056 43.478 0.00 0.00 0.00 3.09
817 846 2.079925 GCTGAAACATTCGAGAGGCTT 58.920 47.619 0.00 0.00 0.00 4.35
818 847 1.277557 AGCTGAAACATTCGAGAGGCT 59.722 47.619 0.00 0.00 0.00 4.58
819 848 1.663135 GAGCTGAAACATTCGAGAGGC 59.337 52.381 0.00 0.00 0.00 4.70
820 849 2.275318 GGAGCTGAAACATTCGAGAGG 58.725 52.381 0.00 0.00 0.00 3.69
821 850 2.275318 GGGAGCTGAAACATTCGAGAG 58.725 52.381 0.00 0.00 0.00 3.20
822 851 1.623311 TGGGAGCTGAAACATTCGAGA 59.377 47.619 0.00 0.00 0.00 4.04
823 852 1.734465 GTGGGAGCTGAAACATTCGAG 59.266 52.381 0.00 0.00 0.00 4.04
824 853 1.808411 GTGGGAGCTGAAACATTCGA 58.192 50.000 0.00 0.00 0.00 3.71
825 854 0.443869 CGTGGGAGCTGAAACATTCG 59.556 55.000 0.00 0.00 0.00 3.34
826 855 1.464997 GTCGTGGGAGCTGAAACATTC 59.535 52.381 0.00 0.00 0.00 2.67
827 856 1.523758 GTCGTGGGAGCTGAAACATT 58.476 50.000 0.00 0.00 0.00 2.71
828 857 0.670546 CGTCGTGGGAGCTGAAACAT 60.671 55.000 0.00 0.00 0.00 2.71
829 858 1.300620 CGTCGTGGGAGCTGAAACA 60.301 57.895 0.00 0.00 0.00 2.83
830 859 2.668280 GCGTCGTGGGAGCTGAAAC 61.668 63.158 0.00 0.00 0.00 2.78
831 860 2.357034 GCGTCGTGGGAGCTGAAA 60.357 61.111 0.00 0.00 0.00 2.69
832 861 4.373116 GGCGTCGTGGGAGCTGAA 62.373 66.667 0.00 0.00 0.00 3.02
834 863 4.803426 GAGGCGTCGTGGGAGCTG 62.803 72.222 0.00 0.00 0.00 4.24
836 865 4.500116 GAGAGGCGTCGTGGGAGC 62.500 72.222 0.00 0.00 0.00 4.70
837 866 3.827898 GGAGAGGCGTCGTGGGAG 61.828 72.222 0.00 0.00 0.00 4.30
848 877 2.681778 ACACAGGAGGCGGAGAGG 60.682 66.667 0.00 0.00 0.00 3.69
849 878 2.716017 GGACACAGGAGGCGGAGAG 61.716 68.421 0.00 0.00 0.00 3.20
850 879 2.680352 GGACACAGGAGGCGGAGA 60.680 66.667 0.00 0.00 0.00 3.71
851 880 4.135153 CGGACACAGGAGGCGGAG 62.135 72.222 0.00 0.00 0.00 4.63
852 881 4.671590 TCGGACACAGGAGGCGGA 62.672 66.667 0.00 0.00 0.00 5.54
853 882 4.135153 CTCGGACACAGGAGGCGG 62.135 72.222 0.00 0.00 0.00 6.13
854 883 3.374402 ACTCGGACACAGGAGGCG 61.374 66.667 0.00 0.00 34.58 5.52
855 884 1.248785 TACACTCGGACACAGGAGGC 61.249 60.000 0.00 0.00 34.58 4.70
856 885 0.811915 CTACACTCGGACACAGGAGG 59.188 60.000 0.00 0.00 34.58 4.30
857 886 1.535833 ACTACACTCGGACACAGGAG 58.464 55.000 0.00 0.00 36.36 3.69
858 887 2.617276 CCTACTACACTCGGACACAGGA 60.617 54.545 0.00 0.00 0.00 3.86
859 888 1.743958 CCTACTACACTCGGACACAGG 59.256 57.143 0.00 0.00 0.00 4.00
860 889 2.161808 CACCTACTACACTCGGACACAG 59.838 54.545 0.00 0.00 0.00 3.66
861 890 2.156917 CACCTACTACACTCGGACACA 58.843 52.381 0.00 0.00 0.00 3.72
862 891 2.419324 CTCACCTACTACACTCGGACAC 59.581 54.545 0.00 0.00 0.00 3.67
863 892 2.617276 CCTCACCTACTACACTCGGACA 60.617 54.545 0.00 0.00 0.00 4.02
864 893 2.015587 CCTCACCTACTACACTCGGAC 58.984 57.143 0.00 0.00 0.00 4.79
865 894 1.681166 GCCTCACCTACTACACTCGGA 60.681 57.143 0.00 0.00 0.00 4.55
866 895 0.739561 GCCTCACCTACTACACTCGG 59.260 60.000 0.00 0.00 0.00 4.63
867 896 0.739561 GGCCTCACCTACTACACTCG 59.260 60.000 0.00 0.00 34.51 4.18
868 897 0.739561 CGGCCTCACCTACTACACTC 59.260 60.000 0.00 0.00 35.61 3.51
869 898 0.330604 TCGGCCTCACCTACTACACT 59.669 55.000 0.00 0.00 35.61 3.55
870 899 0.455005 GTCGGCCTCACCTACTACAC 59.545 60.000 0.00 0.00 35.61 2.90
871 900 0.330604 AGTCGGCCTCACCTACTACA 59.669 55.000 0.00 0.00 42.50 2.74
872 901 0.739561 CAGTCGGCCTCACCTACTAC 59.260 60.000 0.00 0.00 42.43 2.73
873 902 0.395311 CCAGTCGGCCTCACCTACTA 60.395 60.000 0.00 0.00 42.43 1.82
874 903 1.682684 CCAGTCGGCCTCACCTACT 60.683 63.158 0.00 0.00 45.11 2.57
875 904 1.982938 ACCAGTCGGCCTCACCTAC 60.983 63.158 0.00 0.00 35.61 3.18
876 905 1.982395 CACCAGTCGGCCTCACCTA 60.982 63.158 0.00 0.00 35.61 3.08
877 906 3.314331 CACCAGTCGGCCTCACCT 61.314 66.667 0.00 0.00 35.61 4.00
878 907 4.394712 CCACCAGTCGGCCTCACC 62.395 72.222 0.00 0.00 34.57 4.02
879 908 4.394712 CCCACCAGTCGGCCTCAC 62.395 72.222 0.00 0.00 34.57 3.51
880 909 4.631740 TCCCACCAGTCGGCCTCA 62.632 66.667 0.00 0.00 34.57 3.86
881 910 2.406002 TTTTCCCACCAGTCGGCCTC 62.406 60.000 0.00 0.00 34.57 4.70
882 911 1.789576 ATTTTCCCACCAGTCGGCCT 61.790 55.000 0.00 0.00 34.57 5.19
883 912 1.304134 ATTTTCCCACCAGTCGGCC 60.304 57.895 0.00 0.00 34.57 6.13
884 913 0.893727 ACATTTTCCCACCAGTCGGC 60.894 55.000 0.00 0.00 34.57 5.54
885 914 1.539827 GAACATTTTCCCACCAGTCGG 59.460 52.381 0.00 0.00 38.77 4.79
886 915 1.196808 CGAACATTTTCCCACCAGTCG 59.803 52.381 0.00 0.00 0.00 4.18
887 916 2.484264 CTCGAACATTTTCCCACCAGTC 59.516 50.000 0.00 0.00 0.00 3.51
888 917 2.158667 ACTCGAACATTTTCCCACCAGT 60.159 45.455 0.00 0.00 0.00 4.00
889 918 2.226437 CACTCGAACATTTTCCCACCAG 59.774 50.000 0.00 0.00 0.00 4.00
890 919 2.226330 CACTCGAACATTTTCCCACCA 58.774 47.619 0.00 0.00 0.00 4.17
891 920 1.539827 CCACTCGAACATTTTCCCACC 59.460 52.381 0.00 0.00 0.00 4.61
892 921 1.068541 GCCACTCGAACATTTTCCCAC 60.069 52.381 0.00 0.00 0.00 4.61
893 922 1.202879 AGCCACTCGAACATTTTCCCA 60.203 47.619 0.00 0.00 0.00 4.37
894 923 1.200020 CAGCCACTCGAACATTTTCCC 59.800 52.381 0.00 0.00 0.00 3.97
895 924 1.200020 CCAGCCACTCGAACATTTTCC 59.800 52.381 0.00 0.00 0.00 3.13
896 925 2.095718 GTCCAGCCACTCGAACATTTTC 60.096 50.000 0.00 0.00 0.00 2.29
897 926 1.880027 GTCCAGCCACTCGAACATTTT 59.120 47.619 0.00 0.00 0.00 1.82
898 927 1.523758 GTCCAGCCACTCGAACATTT 58.476 50.000 0.00 0.00 0.00 2.32
899 928 0.321653 GGTCCAGCCACTCGAACATT 60.322 55.000 0.00 0.00 37.17 2.71
900 929 1.296715 GGTCCAGCCACTCGAACAT 59.703 57.895 0.00 0.00 37.17 2.71
901 930 2.741092 GGTCCAGCCACTCGAACA 59.259 61.111 0.00 0.00 37.17 3.18
902 931 1.870055 TACGGTCCAGCCACTCGAAC 61.870 60.000 0.00 0.00 36.97 3.95
903 932 0.968901 ATACGGTCCAGCCACTCGAA 60.969 55.000 0.00 0.00 36.97 3.71
904 933 1.379443 ATACGGTCCAGCCACTCGA 60.379 57.895 0.00 0.00 36.97 4.04
905 934 1.065928 GATACGGTCCAGCCACTCG 59.934 63.158 0.00 0.00 36.97 4.18
906 935 1.442148 GGATACGGTCCAGCCACTC 59.558 63.158 4.41 0.00 46.96 3.51
907 936 3.630289 GGATACGGTCCAGCCACT 58.370 61.111 4.41 0.00 46.96 4.00
923 952 2.283529 CCCCGGGATATCCACTCGG 61.284 68.421 26.32 23.70 37.86 4.63
924 953 1.533273 ACCCCGGGATATCCACTCG 60.533 63.158 26.32 16.52 37.91 4.18
925 954 2.058675 CACCCCGGGATATCCACTC 58.941 63.158 26.32 5.29 37.91 3.51
926 955 2.147387 GCACCCCGGGATATCCACT 61.147 63.158 26.32 0.00 37.91 4.00
927 956 2.430367 GCACCCCGGGATATCCAC 59.570 66.667 26.32 11.51 37.91 4.02
928 957 2.659946 TACGCACCCCGGGATATCCA 62.660 60.000 26.32 0.00 42.52 3.41
929 958 1.262640 ATACGCACCCCGGGATATCC 61.263 60.000 26.32 13.87 42.52 2.59
930 959 0.175073 GATACGCACCCCGGGATATC 59.825 60.000 26.32 16.10 42.52 1.63
931 960 1.262640 GGATACGCACCCCGGGATAT 61.263 60.000 26.32 11.34 42.52 1.63
932 961 1.909781 GGATACGCACCCCGGGATA 60.910 63.158 26.32 6.45 42.52 2.59
933 962 3.239253 GGATACGCACCCCGGGAT 61.239 66.667 26.32 0.00 42.52 3.85
945 974 1.272715 CACACGCGCATTCGGATAC 59.727 57.895 5.73 0.00 35.95 2.24
946 975 1.880796 CCACACGCGCATTCGGATA 60.881 57.895 5.73 0.00 35.95 2.59
947 976 3.195002 CCACACGCGCATTCGGAT 61.195 61.111 5.73 0.00 35.95 4.18
948 977 4.673298 ACCACACGCGCATTCGGA 62.673 61.111 5.73 0.00 35.95 4.55
949 978 3.645157 GAACCACACGCGCATTCGG 62.645 63.158 5.73 4.60 35.95 4.30
950 979 2.202171 GAACCACACGCGCATTCG 60.202 61.111 5.73 0.00 39.07 3.34
951 980 2.202171 CGAACCACACGCGCATTC 60.202 61.111 5.73 2.00 0.00 2.67
952 981 3.722295 CCGAACCACACGCGCATT 61.722 61.111 5.73 0.00 0.00 3.56
953 982 4.673298 TCCGAACCACACGCGCAT 62.673 61.111 5.73 0.00 0.00 4.73
956 985 3.103911 GTCTCCGAACCACACGCG 61.104 66.667 3.53 3.53 0.00 6.01
957 986 2.710724 AAGGTCTCCGAACCACACGC 62.711 60.000 4.72 0.00 42.12 5.34
958 987 0.666577 GAAGGTCTCCGAACCACACG 60.667 60.000 4.72 0.00 42.12 4.49
959 988 0.320508 GGAAGGTCTCCGAACCACAC 60.321 60.000 4.72 0.00 42.12 3.82
960 989 2.055299 GGAAGGTCTCCGAACCACA 58.945 57.895 4.72 0.00 42.12 4.17
968 997 2.025887 ACACCATCATTGGAAGGTCTCC 60.026 50.000 0.00 0.00 43.00 3.71
969 998 3.274288 GACACCATCATTGGAAGGTCTC 58.726 50.000 0.00 0.00 43.00 3.36
970 999 2.355108 CGACACCATCATTGGAAGGTCT 60.355 50.000 0.00 0.00 43.00 3.85
971 1000 2.009774 CGACACCATCATTGGAAGGTC 58.990 52.381 0.00 3.27 43.00 3.85
972 1001 1.340017 CCGACACCATCATTGGAAGGT 60.340 52.381 0.00 0.00 45.64 3.50
973 1002 1.382522 CCGACACCATCATTGGAAGG 58.617 55.000 0.00 0.00 46.92 3.46
974 1003 1.382522 CCCGACACCATCATTGGAAG 58.617 55.000 0.00 0.00 46.92 3.46
975 1004 0.679640 GCCCGACACCATCATTGGAA 60.680 55.000 0.00 0.00 46.92 3.53
976 1005 1.077787 GCCCGACACCATCATTGGA 60.078 57.895 0.00 0.00 46.92 3.53
978 1007 2.120909 GGGCCCGACACCATCATTG 61.121 63.158 5.69 0.00 0.00 2.82
979 1008 0.986019 TAGGGCCCGACACCATCATT 60.986 55.000 18.44 0.00 0.00 2.57
980 1009 1.383943 TAGGGCCCGACACCATCAT 60.384 57.895 18.44 0.00 0.00 2.45
981 1010 2.039787 TAGGGCCCGACACCATCA 59.960 61.111 18.44 0.00 0.00 3.07
982 1011 1.122019 ATCTAGGGCCCGACACCATC 61.122 60.000 18.44 0.00 0.00 3.51
983 1012 1.074471 ATCTAGGGCCCGACACCAT 60.074 57.895 18.44 0.00 0.00 3.55
984 1013 2.063979 CATCTAGGGCCCGACACCA 61.064 63.158 18.44 0.00 0.00 4.17
985 1014 2.808206 CCATCTAGGGCCCGACACC 61.808 68.421 18.44 0.00 0.00 4.16
986 1015 2.822399 CCATCTAGGGCCCGACAC 59.178 66.667 18.44 0.00 0.00 3.67
995 1024 3.242867 TGACATCTAAGGCCCATCTAGG 58.757 50.000 0.00 0.00 37.03 3.02
996 1025 3.260380 CCTGACATCTAAGGCCCATCTAG 59.740 52.174 0.00 0.00 0.00 2.43
997 1026 3.242867 CCTGACATCTAAGGCCCATCTA 58.757 50.000 0.00 0.00 0.00 1.98
998 1027 2.053244 CCTGACATCTAAGGCCCATCT 58.947 52.381 0.00 0.00 0.00 2.90
999 1028 1.771255 ACCTGACATCTAAGGCCCATC 59.229 52.381 0.00 0.00 37.03 3.51
1000 1029 1.771255 GACCTGACATCTAAGGCCCAT 59.229 52.381 0.00 0.00 37.03 4.00
1001 1030 1.204146 GACCTGACATCTAAGGCCCA 58.796 55.000 0.00 0.00 37.03 5.36
1002 1031 0.470341 GGACCTGACATCTAAGGCCC 59.530 60.000 0.00 0.00 37.03 5.80
1003 1032 1.204146 TGGACCTGACATCTAAGGCC 58.796 55.000 0.00 0.00 37.03 5.19
1004 1033 2.486191 CCATGGACCTGACATCTAAGGC 60.486 54.545 5.56 0.00 37.03 4.35
1005 1034 2.486191 GCCATGGACCTGACATCTAAGG 60.486 54.545 18.40 0.00 39.65 2.69
1006 1035 2.486191 GGCCATGGACCTGACATCTAAG 60.486 54.545 18.40 0.00 0.00 2.18
1007 1036 1.490490 GGCCATGGACCTGACATCTAA 59.510 52.381 18.40 0.00 0.00 2.10
1008 1037 1.131638 GGCCATGGACCTGACATCTA 58.868 55.000 18.40 0.00 0.00 1.98
1009 1038 1.639635 GGGCCATGGACCTGACATCT 61.640 60.000 31.16 0.00 41.04 2.90
1010 1039 1.152881 GGGCCATGGACCTGACATC 60.153 63.158 31.16 0.00 41.04 3.06
1011 1040 3.010144 GGGCCATGGACCTGACAT 58.990 61.111 31.16 0.00 41.04 3.06
1017 1046 1.580994 AAAGGGTAGGGCCATGGACC 61.581 60.000 31.37 31.37 45.79 4.46
1018 1047 1.218844 TAAAGGGTAGGGCCATGGAC 58.781 55.000 18.40 14.40 39.65 4.02
1019 1048 2.222461 ATAAAGGGTAGGGCCATGGA 57.778 50.000 18.40 0.00 39.65 3.41
1020 1049 3.256704 TCTATAAAGGGTAGGGCCATGG 58.743 50.000 7.63 7.63 39.65 3.66
1021 1050 4.785376 AGATCTATAAAGGGTAGGGCCATG 59.215 45.833 6.18 0.00 39.65 3.66
1022 1051 5.033522 GAGATCTATAAAGGGTAGGGCCAT 58.966 45.833 6.18 0.00 39.65 4.40
1023 1052 4.109765 AGAGATCTATAAAGGGTAGGGCCA 59.890 45.833 6.18 0.00 39.65 5.36
1024 1053 4.690149 AGAGATCTATAAAGGGTAGGGCC 58.310 47.826 0.00 0.00 0.00 5.80
1025 1054 6.689663 AAAGAGATCTATAAAGGGTAGGGC 57.310 41.667 0.00 0.00 0.00 5.19
1026 1055 9.777008 AGATAAAGAGATCTATAAAGGGTAGGG 57.223 37.037 0.00 0.00 34.29 3.53
1217 1248 1.612462 CCAACATCTTCAGGCTGCAGA 60.612 52.381 18.91 18.91 0.00 4.26
1224 1255 1.798735 CAGCGCCAACATCTTCAGG 59.201 57.895 2.29 0.00 0.00 3.86
1340 1374 7.201884 CCAGATTTAGAAATGAGTGGATGCATT 60.202 37.037 0.00 0.00 36.35 3.56
1646 1691 5.565509 TCCTGTGGTGCATTATTCTGTTTA 58.434 37.500 0.00 0.00 0.00 2.01
1647 1692 4.406456 TCCTGTGGTGCATTATTCTGTTT 58.594 39.130 0.00 0.00 0.00 2.83
1648 1693 4.032960 TCCTGTGGTGCATTATTCTGTT 57.967 40.909 0.00 0.00 0.00 3.16
1650 1695 5.587388 AAATCCTGTGGTGCATTATTCTG 57.413 39.130 0.00 0.00 0.00 3.02
1660 1705 5.404946 CAGATTTGCTTAAATCCTGTGGTG 58.595 41.667 8.64 0.00 39.39 4.17
1678 1723 3.646534 CCCCTTCCCTATTTTGCAGATT 58.353 45.455 0.00 0.00 0.00 2.40
1759 1804 6.692486 AGACAGAAGATTTATGTGAACGTCT 58.308 36.000 0.00 0.00 0.00 4.18
1812 1858 5.431765 AGGGCATAGAAGTTTGTGAGTATG 58.568 41.667 0.00 0.00 0.00 2.39
1898 1945 8.324191 TCATCTCCTTGTCTTGGATACTTATT 57.676 34.615 0.00 0.00 32.56 1.40
1915 1962 6.882768 ACTTTTCTTATCCACTCATCTCCT 57.117 37.500 0.00 0.00 0.00 3.69
1940 1987 9.832445 GTGATGTATTCCTACTTTTCTTATCCA 57.168 33.333 0.00 0.00 0.00 3.41
1945 1992 9.014297 CCAAAGTGATGTATTCCTACTTTTCTT 57.986 33.333 0.00 0.00 38.96 2.52
1946 1993 7.121315 GCCAAAGTGATGTATTCCTACTTTTCT 59.879 37.037 0.00 0.00 38.96 2.52
1947 1994 7.251281 GCCAAAGTGATGTATTCCTACTTTTC 58.749 38.462 0.00 0.00 38.96 2.29
1948 1995 6.128007 CGCCAAAGTGATGTATTCCTACTTTT 60.128 38.462 0.00 0.00 38.96 2.27
1949 1996 5.354234 CGCCAAAGTGATGTATTCCTACTTT 59.646 40.000 0.00 0.00 40.93 2.66
1950 1997 4.876107 CGCCAAAGTGATGTATTCCTACTT 59.124 41.667 0.00 0.00 33.36 2.24
1951 1998 4.081087 ACGCCAAAGTGATGTATTCCTACT 60.081 41.667 0.00 0.00 0.00 2.57
1952 1999 4.189231 ACGCCAAAGTGATGTATTCCTAC 58.811 43.478 0.00 0.00 0.00 3.18
1953 2000 4.481368 ACGCCAAAGTGATGTATTCCTA 57.519 40.909 0.00 0.00 0.00 2.94
1954 2001 3.350219 ACGCCAAAGTGATGTATTCCT 57.650 42.857 0.00 0.00 0.00 3.36
1955 2002 4.393680 TGTAACGCCAAAGTGATGTATTCC 59.606 41.667 0.00 0.00 0.00 3.01
1958 2005 4.201910 GCATGTAACGCCAAAGTGATGTAT 60.202 41.667 0.00 0.00 0.00 2.29
1971 2018 4.091424 GTGAAATCTTCTGCATGTAACGC 58.909 43.478 0.00 0.00 0.00 4.84
2001 2048 3.181443 CCCGATACCCCTTGATTTAAGCT 60.181 47.826 0.00 0.00 34.96 3.74
2033 2080 5.324409 TCCAGCTTACAAGAATGGTTCAAT 58.676 37.500 11.30 0.00 36.41 2.57
2041 2088 4.973168 TCAACACTCCAGCTTACAAGAAT 58.027 39.130 0.00 0.00 0.00 2.40
2152 2203 7.833682 TGTATTGTTTGAACCTCATGGACATAT 59.166 33.333 0.00 0.00 37.04 1.78
2153 2204 7.171653 TGTATTGTTTGAACCTCATGGACATA 58.828 34.615 0.00 0.00 37.04 2.29
2166 2217 6.693545 GTGGAATTGTCGTTGTATTGTTTGAA 59.306 34.615 0.00 0.00 0.00 2.69
2171 2222 4.138290 TGGTGGAATTGTCGTTGTATTGT 58.862 39.130 0.00 0.00 0.00 2.71
2194 2253 5.358160 CCATGTTAGAAGGGAGAAATGGTTC 59.642 44.000 0.00 0.00 0.00 3.62
2199 2258 7.698163 AGATACCATGTTAGAAGGGAGAAAT 57.302 36.000 0.00 0.00 0.00 2.17
2285 2344 3.771160 GTCATGGAGGCCGACCGT 61.771 66.667 15.28 12.87 42.76 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.