AutoCloner

Multiple sequence alignment - TraesCS6A01G136100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G136100	chr6A	100.000	3612	0	0	1	3612	107268492	107272103	0.000000e+00	6671
1	TraesCS6A01G136100	chr6A	79.532	1495	279	21	2127	3612	107215467	107216943	0.000000e+00	1040
2	TraesCS6A01G136100	chr6A	79.428	1434	278	12	2127	3556	107682412	107683832	0.000000e+00	998
3	TraesCS6A01G136100	chr6A	78.788	1485	299	14	2098	3574	107244365	107245841	0.000000e+00	983
4	TraesCS6A01G136100	chr6A	79.661	1062	199	12	1033	2087	107214520	107215571	0.000000e+00	749
5	TraesCS6A01G136100	chr6A	77.203	1180	236	26	937	2095	107243339	107244506	0.000000e+00	658
6	TraesCS6A01G136100	chr6A	93.197	147	10	0	2098	2244	107270445	107270591	2.180000e-52	217
7	TraesCS6A01G136100	chr6A	93.197	147	10	0	1954	2100	107270589	107270735	2.180000e-52	217
8	TraesCS6A01G136100	chr6B	93.631	3046	166	15	581	3612	171204515	171207546	0.000000e+00	4525
9	TraesCS6A01G136100	chr6B	79.919	1489	277	17	2127	3609	171030209	171031681	0.000000e+00	1074
10	TraesCS6A01G136100	chr6B	78.786	1433	289	11	2127	3556	171701058	171702478	0.000000e+00	948
11	TraesCS6A01G136100	chr6B	78.397	1472	296	16	2098	3560	171183695	171185153	0.000000e+00	937
12	TraesCS6A01G136100	chr6B	91.133	609	37	4	1	592	171202783	171203391	0.000000e+00	809
13	TraesCS6A01G136100	chr6B	80.149	1073	204	8	1031	2100	171700109	171701175	0.000000e+00	793
14	TraesCS6A01G136100	chr6B	79.680	1063	197	14	1033	2087	171029262	171030313	0.000000e+00	749
15	TraesCS6A01G136100	chr6B	77.778	648	125	12	1318	1963	171704814	171705444	7.320000e-102	381
16	TraesCS6A01G136100	chr6B	96.599	147	5	0	1954	2100	171206041	171206187	1.000000e-60	244
17	TraesCS6A01G136100	chr6B	93.197	147	10	0	2098	2244	171205897	171206043	2.180000e-52	217
18	TraesCS6A01G136100	chr6D	88.069	1517	174	6	2098	3612	89167653	89169164	0.000000e+00	1792
19	TraesCS6A01G136100	chr6D	87.527	914	99	9	1191	2100	89166897	89167799	0.000000e+00	1042
20	TraesCS6A01G136100	chr6D	87.486	911	70	23	264	1138	89165997	89166899	0.000000e+00	1011
21	TraesCS6A01G136100	chr6D	78.884	1487	294	14	2098	3574	89157249	89158725	0.000000e+00	989
22	TraesCS6A01G136100	chr6D	79.693	1369	257	20	2127	3489	89069465	89070818	0.000000e+00	968
23	TraesCS6A01G136100	chr6D	80.750	1013	176	14	1033	2037	89068518	89069519	0.000000e+00	773
24	TraesCS6A01G136100	chr6D	77.179	1113	231	16	2127	3232	89301841	89302937	8.510000e-176	627
25	TraesCS6A01G136100	chr6D	82.996	494	79	3	1031	1523	89299595	89300084	3.310000e-120	442
26	TraesCS6A01G136100	chr6D	83.273	275	14	12	1	273	89165727	89165971	1.310000e-54	224
27	TraesCS6A01G136100	chr7D	78.069	1067	221	12	1033	2094	634087308	634088366	0.000000e+00	662
28	TraesCS6A01G136100	chrUn	76.978	1112	235	14	2127	3232	325920367	325919271	1.840000e-172	616
29	TraesCS6A01G136100	chrUn	76.707	747	163	8	2127	2869	335905630	335906369	4.340000e-109	405
30	TraesCS6A01G136100	chrUn	76.707	747	163	8	2127	2869	335908312	335909051	4.340000e-109	405
31	TraesCS6A01G136100	chrUn	76.707	747	163	8	2127	2869	394420837	394421576	4.340000e-109	405
32	TraesCS6A01G136100	chr7A	83.753	437	70	1	3123	3559	732048756	732049191	2.600000e-111	412
33	TraesCS6A01G136100	chr7B	80.000	315	60	2	1033	1347	742417745	742418056	2.810000e-56	230

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G136100	chr6A	107268492	107272103	3611	False	2368.333333	6671	95.464667	1	3612	3	chr6A.!!$F4	3611
1	TraesCS6A01G136100	chr6A	107682412	107683832	1420	False	998.000000	998	79.428000	2127	3556	1	chr6A.!!$F1	1429
2	TraesCS6A01G136100	chr6A	107214520	107216943	2423	False	894.500000	1040	79.596500	1033	3612	2	chr6A.!!$F2	2579
3	TraesCS6A01G136100	chr6A	107243339	107245841	2502	False	820.500000	983	77.995500	937	3574	2	chr6A.!!$F3	2637
4	TraesCS6A01G136100	chr6B	171202783	171207546	4763	False	1448.750000	4525	93.640000	1	3612	4	chr6B.!!$F3	3611
5	TraesCS6A01G136100	chr6B	171183695	171185153	1458	False	937.000000	937	78.397000	2098	3560	1	chr6B.!!$F1	1462
6	TraesCS6A01G136100	chr6B	171029262	171031681	2419	False	911.500000	1074	79.799500	1033	3609	2	chr6B.!!$F2	2576
7	TraesCS6A01G136100	chr6B	171700109	171705444	5335	False	707.333333	948	78.904333	1031	3556	3	chr6B.!!$F4	2525
8	TraesCS6A01G136100	chr6D	89165727	89169164	3437	False	1017.250000	1792	86.588750	1	3612	4	chr6D.!!$F3	3611
9	TraesCS6A01G136100	chr6D	89157249	89158725	1476	False	989.000000	989	78.884000	2098	3574	1	chr6D.!!$F1	1476
10	TraesCS6A01G136100	chr6D	89068518	89070818	2300	False	870.500000	968	80.221500	1033	3489	2	chr6D.!!$F2	2456
11	TraesCS6A01G136100	chr6D	89299595	89302937	3342	False	534.500000	627	80.087500	1031	3232	2	chr6D.!!$F4	2201
12	TraesCS6A01G136100	chr7D	634087308	634088366	1058	False	662.000000	662	78.069000	1033	2094	1	chr7D.!!$F1	1061
13	TraesCS6A01G136100	chrUn	325919271	325920367	1096	True	616.000000	616	76.978000	2127	3232	1	chrUn.!!$R1	1105
14	TraesCS6A01G136100	chrUn	335905630	335909051	3421	False	405.000000	405	76.707000	2127	2869	2	chrUn.!!$F2	742
15	TraesCS6A01G136100	chrUn	394420837	394421576	739	False	405.000000	405	76.707000	2127	2869	1	chrUn.!!$F1	742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
847	2052	0.037697	TTTCTCACACGATGACCCCG	60.038	55.0	0.00	0.0	32.37	5.73	F
1947	4464	0.178967	TTGGAAGCTTGCCACCATCA	60.179	50.0	15.98	0.0	34.56	3.07	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2145	4662	0.106167	TCTCTGAGGGGATGGTACCG	60.106	60.000	7.57	0.0	0.0	4.02	R
2956	6388	1.135915	AGACAGTTCTGATAGCTGCCG	59.864	52.381	6.83	0.0	39.9	5.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
93	94	4.186926	TGCTAGATCACTGAGTTTGATGC	58.813	43.478	0.00	0.00	33.70	3.91
100	101	2.096069	CACTGAGTTTGATGCTGTTCGG	60.096	50.000	0.00	0.00	0.00	4.30
162	163	3.883830	TGTTTTTCAGCAACACATGGT	57.116	38.095	0.00	0.00	41.41	3.55
187	189	3.791973	TGTTTTCCTTTGTTGCATCGT	57.208	38.095	0.00	0.00	0.00	3.73
235	237	3.788766	GGCGCGTACCTTGCAGTG	61.789	66.667	8.43	0.00	0.00	3.66
317	354	5.143369	AGCCTCCTCTTTGTTTTCTTTCAT	58.857	37.500	0.00	0.00	0.00	2.57
367	405	6.159928	TCCAGTCCTGTCTAGGTTCTATAGAA	59.840	42.308	11.24	11.24	44.88	2.10
440	478	3.926616	TCGGTTCCTGTTCTCTGAATTC	58.073	45.455	0.00	0.00	0.00	2.17
458	496	6.845302	TGAATTCTTAGCACAACATCATCAC	58.155	36.000	7.05	0.00	0.00	3.06
464	507	1.394917	GCACAACATCATCACGAGTCC	59.605	52.381	0.00	0.00	0.00	3.85
577	646	8.644619	CATTTGTTGATTCACAGTTGATCATTC	58.355	33.333	0.00	0.00	0.00	2.67
599	1803	3.253188	CGGAATTTCTGCCTCTGTTTTCA	59.747	43.478	0.00	0.00	0.00	2.69
602	1806	4.691860	ATTTCTGCCTCTGTTTTCATCG	57.308	40.909	0.00	0.00	0.00	3.84
655	1859	4.141274	TGGATTCAGTTTCTGGAGGTTCAA	60.141	41.667	0.00	0.00	31.51	2.69
719	1923	2.829206	TTCACGGCAACCACAAGCG	61.829	57.895	0.00	0.00	0.00	4.68
724	1928	1.809207	GGCAACCACAAGCGCATAT	59.191	52.632	11.47	0.00	0.00	1.78
735	1939	1.545841	AGCGCATATATCTCCGGTCA	58.454	50.000	11.47	0.00	0.00	4.02
737	1941	3.288092	AGCGCATATATCTCCGGTCATA	58.712	45.455	11.47	0.00	0.00	2.15
746	1950	3.104519	TCTCCGGTCATAACCTTACCA	57.895	47.619	0.00	0.00	44.04	3.25
788	1993	2.293519	TGTGAGTCTGGGGATTGGGATA	60.294	50.000	0.00	0.00	0.00	2.59
830	2035	6.610075	AGCACTGGTGGATTTGATATTTTT	57.390	33.333	2.84	0.00	0.00	1.94
847	2052	0.037697	TTTCTCACACGATGACCCCG	60.038	55.000	0.00	0.00	32.37	5.73
881	2088	2.532235	TGTACGCATATGTTCGTCCAC	58.468	47.619	11.00	6.71	39.79	4.02
902	2109	4.268644	CACCGACAGCTCTACAATGTATTG	59.731	45.833	3.17	3.17	43.26	1.90
913	2120	7.596995	GCTCTACAATGTATTGCTACCTCTAAG	59.403	40.741	4.58	0.00	41.38	2.18
926	2133	2.979240	CCTCTAAGGTCTGAAGGCAAC	58.021	52.381	0.00	0.00	0.00	4.17
935	2142	3.179048	GTCTGAAGGCAACAAACAACAC	58.821	45.455	0.00	0.00	41.41	3.32
947	2154	0.534873	AACAACACCAACCTGCAACC	59.465	50.000	0.00	0.00	0.00	3.77
976	2185	1.961793	TACCAACACTCCAACTGCAC	58.038	50.000	0.00	0.00	0.00	4.57
1113	2332	2.700371	ACTATCCTCATGGTCGATTGCA	59.300	45.455	0.00	0.00	34.23	4.08
1115	2334	1.737838	TCCTCATGGTCGATTGCAAC	58.262	50.000	0.00	0.00	34.23	4.17
1235	2454	1.461127	CTACTCTGCAGCGTTCCAAAC	59.539	52.381	15.60	0.00	0.00	2.93
1299	2518	1.559682	GTCCCAGCAAACATCTCCCTA	59.440	52.381	0.00	0.00	0.00	3.53
1308	2527	4.943705	GCAAACATCTCCCTATTTCTCACA	59.056	41.667	0.00	0.00	0.00	3.58
1320	2539	6.164176	CCTATTTCTCACACTTACCGTTCTT	58.836	40.000	0.00	0.00	0.00	2.52
1330	2549	2.450609	TACCGTTCTTGACTTGAGCC	57.549	50.000	0.00	0.00	0.00	4.70
1415	2634	6.840780	AGATTTGGGAAATAACCACTTGAG	57.159	37.500	0.00	0.00	37.82	3.02
1439	2658	4.322057	ACCCAGAATATGCCAACTTCTT	57.678	40.909	0.00	0.00	0.00	2.52
1509	2728	1.901833	GGTGCCTTCCCACAATTCATT	59.098	47.619	0.00	0.00	37.46	2.57
1551	4067	5.930837	GGATGAGATCCCTCGATTTATCT	57.069	43.478	3.88	3.88	43.88	1.98
1579	4095	0.323629	CTTCTCAGGGCCGTTACCAA	59.676	55.000	0.00	0.00	0.00	3.67
1613	4129	0.405585	ATGGTCCCAAGGTTGAGGTG	59.594	55.000	0.00	0.00	0.00	4.00
1651	4167	5.645497	GCTAATGGATTCTTTGGCTCGATAT	59.355	40.000	1.16	0.00	33.72	1.63
1655	4171	4.344968	TGGATTCTTTGGCTCGATATCTCA	59.655	41.667	0.34	0.00	0.00	3.27
1737	4253	1.283321	GGAATTCCAGAGGAGCTTGGT	59.717	52.381	20.04	0.00	35.64	3.67
1752	4268	3.452264	AGCTTGGTATGATGTCTGCACTA	59.548	43.478	0.00	0.00	0.00	2.74
1768	4284	2.477825	CACTACGATGGCTGATCCTTG	58.522	52.381	0.00	0.00	35.26	3.61
1947	4464	0.178967	TTGGAAGCTTGCCACCATCA	60.179	50.000	15.98	0.00	34.56	3.07
1969	4486	1.004679	GCCAGGGTGCAAACAATGG	60.005	57.895	0.00	0.00	32.08	3.16
1988	4505	2.574369	TGGTGTATTTCAGTGTAGGGGG	59.426	50.000	0.00	0.00	0.00	5.40
2145	4662	5.354234	CAGTGTAGGGGACAACAATATCAAC	59.646	44.000	0.00	0.00	40.66	3.18
2172	4689	3.493350	CCATCCCCTCAGAGATGTTTACG	60.493	52.174	0.00	0.00	38.57	3.18
2189	4706	7.556733	TGTTTACGAACTTGACAAACCTTAT	57.443	32.000	0.00	0.00	36.70	1.73
2382	4899	3.994931	ACTGGAACAATACCACCTACC	57.005	47.619	0.00	0.00	38.70	3.18
2476	4993	5.669447	ACCATCTCCTATCTGGTGAATCTTT	59.331	40.000	0.00	0.00	41.65	2.52
2557	5074	4.506654	GGCAGTCGACGATTATTAATGTGT	59.493	41.667	10.46	0.00	0.00	3.72
2647	5179	7.507829	AGTCCTGGATCTATCAAAGAATCAAG	58.492	38.462	0.00	0.00	37.89	3.02
2684	5216	1.111277	GGTTGCTTGTGGAACTTGGT	58.889	50.000	0.00	0.00	42.91	3.67
2687	5219	2.270352	TGCTTGTGGAACTTGGTAGG	57.730	50.000	0.00	0.00	38.04	3.18
2692	5224	1.697432	TGTGGAACTTGGTAGGACTGG	59.303	52.381	0.00	0.00	38.04	4.00
2875	5411	4.153117	GGAATAATAAGATGTCTGGCGCAG	59.847	45.833	10.83	4.99	0.00	5.18
2924	6356	2.879103	TTGTTGAGGATCCTTGGACC	57.121	50.000	17.42	2.73	0.00	4.46
2968	6725	0.976641	TATTCCCCGGCAGCTATCAG	59.023	55.000	0.00	0.00	0.00	2.90
3002	6840	2.093288	TCCAACTGCTTGATCTAGCTGG	60.093	50.000	29.20	25.56	42.39	4.85
3269	7137	4.371855	TGACAAGTCTTAGAGGCATACG	57.628	45.455	1.53	0.00	0.00	3.06
3510	8101	9.515226	GACCCATCAATTTATAGCAATAACCTA	57.485	33.333	0.00	0.00	0.00	3.08
3545	8136	5.120830	GCTCTCTGTTGAACATTTCGTGTAT	59.879	40.000	0.00	0.00	41.14	2.29
3575	8184	4.051237	TCAAGTCTGACAATCACTTCACG	58.949	43.478	10.88	0.00	0.00	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	6.204495	GCCTCTTTTTCAGATATCAGTCCATC	59.796	42.308	5.32	0.00	0.00	3.51
116	117	1.206849	CCAAAGCACAACCACAAACCT	59.793	47.619	0.00	0.00	0.00	3.50
131	132	2.535574	GCTGAAAAACAACGCTCCAAAG	59.464	45.455	0.00	0.00	0.00	2.77
162	163	2.094494	TGCAACAAAGGAAAACAAGCGA	60.094	40.909	0.00	0.00	0.00	4.93
187	189	1.552578	AAGATTCTGCTGCATGGCAA	58.447	45.000	1.31	0.00	41.94	4.52
235	237	4.898607	TGGGAAACAGAGTGCCAC	57.101	55.556	0.00	0.00	30.52	5.01
286	323	1.627834	CAAAGAGGAGGCTCAGGAACT	59.372	52.381	17.69	3.12	43.88	3.01
367	405	9.499479	CTCAGATCATAACAATAATAAGCCAGT	57.501	33.333	0.00	0.00	0.00	4.00
440	478	3.928992	ACTCGTGATGATGTTGTGCTAAG	59.071	43.478	0.00	0.00	0.00	2.18
577	646	3.253188	TGAAAACAGAGGCAGAAATTCCG	59.747	43.478	0.00	0.00	0.00	4.30
599	1803	1.217244	GAAGGTACCACGGTGCGAT	59.783	57.895	15.94	0.00	0.00	4.58
602	1806	1.310904	TTTTGAAGGTACCACGGTGC	58.689	50.000	15.94	0.00	0.00	5.01
631	1835	4.141274	TGAACCTCCAGAAACTGAATCCAA	60.141	41.667	0.00	0.00	32.44	3.53
655	1859	4.271807	TCACCCAGTCATTCTCTAGGAT	57.728	45.455	0.00	0.00	0.00	3.24
737	1941	8.611051	AGTGATTACTATTCTCTGGTAAGGTT	57.389	34.615	0.00	0.00	34.70	3.50
746	1950	8.354711	TCACAGTGAAGTGATTACTATTCTCT	57.645	34.615	0.00	0.00	43.18	3.10
773	1977	2.295269	TTGGTATCCCAATCCCCAGA	57.705	50.000	0.00	0.00	45.93	3.86
788	1993	1.943730	TTTGAGGCCACACCCTTGGT	61.944	55.000	5.01	0.00	40.58	3.67
830	2035	1.303806	TCGGGGTCATCGTGTGAGA	60.304	57.895	0.00	0.00	37.56	3.27
847	2052	3.639538	TGCGTACAAAGACTTCAGACTC	58.360	45.455	0.00	0.00	0.00	3.36
881	2088	3.246226	GCAATACATTGTAGAGCTGTCGG	59.754	47.826	13.17	0.00	39.88	4.79
913	2120	2.165437	TGTTGTTTGTTGCCTTCAGACC	59.835	45.455	0.00	0.00	0.00	3.85
926	2133	1.999024	GTTGCAGGTTGGTGTTGTTTG	59.001	47.619	0.00	0.00	0.00	2.93
935	2142	1.331214	AATGACAGGTTGCAGGTTGG	58.669	50.000	0.00	0.00	0.00	3.77
947	2154	5.766150	TGGAGTGTTGGTAAAAATGACAG	57.234	39.130	0.00	0.00	0.00	3.51
976	2185	1.267806	AGTTTCTGCAGCACCATTTCG	59.732	47.619	9.47	0.00	0.00	3.46
1113	2332	2.031495	ACCAAGAGCAGGTAGAGGTT	57.969	50.000	0.00	0.00	37.67	3.50
1115	2334	1.134965	CGAACCAAGAGCAGGTAGAGG	60.135	57.143	0.00	0.00	38.76	3.69
1235	2454	1.821061	AAGGTCGAGCACAGTGAGGG	61.821	60.000	18.15	0.00	0.00	4.30
1299	2518	5.465724	GTCAAGAACGGTAAGTGTGAGAAAT	59.534	40.000	0.00	0.00	0.00	2.17
1308	2527	3.391049	GCTCAAGTCAAGAACGGTAAGT	58.609	45.455	0.00	0.00	0.00	2.24
1320	2539	3.678056	AGATTGTTACGGCTCAAGTCA	57.322	42.857	0.00	0.00	0.00	3.41
1415	2634	2.102578	AGTTGGCATATTCTGGGTTGC	58.897	47.619	0.00	0.00	0.00	4.17
1439	2658	6.182507	ACAACTTCAAACTGGACATAGGTA	57.817	37.500	0.00	0.00	0.00	3.08
1551	4067	0.690762	GCCCTGAGAAGGTGTTACCA	59.309	55.000	0.28	0.00	41.95	3.25
1613	4129	3.055819	TCCATTAGCGGATAGATTCAGGC	60.056	47.826	0.00	0.00	0.00	4.85
1651	4167	1.542030	GAGCCTTGAGAACGAGTGAGA	59.458	52.381	0.00	0.00	0.00	3.27
1655	4171	1.048601	TTGGAGCCTTGAGAACGAGT	58.951	50.000	0.00	0.00	0.00	4.18
1737	4253	3.552890	GCCATCGTAGTGCAGACATCATA	60.553	47.826	0.00	0.00	0.00	2.15
1752	4268	1.153086	GCCAAGGATCAGCCATCGT	60.153	57.895	0.00	0.00	40.02	3.73
1768	4284	2.421314	GCCAAGTGGGTTGTTGCC	59.579	61.111	0.00	0.00	39.65	4.52
1969	4486	2.026636	TGCCCCCTACACTGAAATACAC	60.027	50.000	0.00	0.00	0.00	2.90
1988	4505	5.278957	GGGATGGTACCATTGATATTGTTGC	60.279	44.000	27.97	10.61	36.70	4.17
2073	4590	1.728490	GCGATGGGATGCTTCCAACC	61.728	60.000	19.49	0.00	44.60	3.77
2145	4662	0.106167	TCTCTGAGGGGATGGTACCG	60.106	60.000	7.57	0.00	0.00	4.02
2172	4689	8.149973	TGAAGTACATAAGGTTTGTCAAGTTC	57.850	34.615	0.00	0.00	0.00	3.01
2189	4706	8.903570	CAAGTTGTTTGTAACATTGAAGTACA	57.096	30.769	0.00	0.00	41.79	2.90
2382	4899	4.432762	CGCAACTTTGTTAAATTGCCGATG	60.433	41.667	2.47	0.00	43.60	3.84
2476	4993	4.771114	TTCCAGACAAGGAGAGAACAAA	57.229	40.909	0.00	0.00	39.25	2.83
2557	5074	0.741574	ACGCTGTTGTTGTTGTCGGA	60.742	50.000	0.00	0.00	0.00	4.55
2664	5196	1.341976	ACCAAGTTCCACAAGCAACCT	60.342	47.619	0.00	0.00	0.00	3.50
2687	5219	3.375299	CGACAAATCCAAGGATTCCAGTC	59.625	47.826	14.33	18.25	43.26	3.51
2692	5224	3.009723	TGCTCGACAAATCCAAGGATTC	58.990	45.455	14.33	2.41	43.26	2.52
2924	6356	3.555547	TCCATAGAACATGTTTGATCGCG	59.444	43.478	13.36	0.00	30.44	5.87
2956	6388	1.135915	AGACAGTTCTGATAGCTGCCG	59.864	52.381	6.83	0.00	39.90	5.69
2968	6725	4.826556	AGCAGTTGGAGATTAGACAGTTC	58.173	43.478	0.00	0.00	0.00	3.01
3315	7183	3.087031	CCACTTCAGATTGCCAATGTCT	58.913	45.455	0.00	0.00	0.00	3.41
3510	8101	1.428869	ACAGAGAGCCACAAAGTCCT	58.571	50.000	0.00	0.00	0.00	3.85
3545	8136	9.778741	AAGTGATTGTCAGACTTGAACTATTTA	57.221	29.630	1.31	0.00	34.49	1.40
3575	8184	4.460382	TCCAAATGGCTTCAAGATCTTGAC	59.540	41.667	32.80	23.17	41.09	3.18

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.