Multiple sequence alignment - TraesCS6A01G135700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G135700 chr6A 100.000 2585 0 0 1 2585 107219535 107216951 0.000000e+00 4774.0
1 TraesCS6A01G135700 chr6B 90.586 1912 133 13 279 2159 171034472 171032577 0.000000e+00 2490.0
2 TraesCS6A01G135700 chr6B 93.706 429 26 1 2158 2585 171032120 171031692 2.170000e-180 641.0
3 TraesCS6A01G135700 chr6B 91.085 258 20 3 1 256 171034703 171034447 1.900000e-91 346.0
4 TraesCS6A01G135700 chr6B 85.897 78 8 1 2158 2232 171032033 171031956 2.130000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G135700 chr6A 107216951 107219535 2584 True 4774.000 4774 100.0000 1 2585 1 chr6A.!!$R1 2584
1 TraesCS6A01G135700 chr6B 171031692 171034703 3011 True 889.375 2490 90.3185 1 2585 4 chr6B.!!$R1 2584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 330 0.040067 GGCGGTTTCAGTGCAAGAAG 60.040 55.0 0.0 0.0 0.0 2.85 F
1243 1246 0.034337 TACGGGTGGTGAGAGCAAAC 59.966 55.0 0.0 0.0 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1351 1354 0.317160 TCGCCAACAGTCGTCTCATT 59.683 50.000 0.0 0.0 0.0 2.57 R
2202 2693 3.084039 CAGTGGTAATGGTGCATGTCTT 58.916 45.455 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.899226 GTCTTAATATTATTTTGCCATGGACTC 57.101 33.333 18.40 0.00 0.00 3.36
96 97 9.262358 GATCTTAGTTAGGCTATTTGTCGATTT 57.738 33.333 0.00 0.00 0.00 2.17
106 107 1.573829 TTGTCGATTTCGGCTGCACC 61.574 55.000 6.11 0.00 45.41 5.01
109 111 0.605319 TCGATTTCGGCTGCACCTTT 60.605 50.000 0.50 0.00 40.29 3.11
110 112 0.240945 CGATTTCGGCTGCACCTTTT 59.759 50.000 0.50 0.00 35.61 2.27
116 118 1.754226 TCGGCTGCACCTTTTTCTTTT 59.246 42.857 0.50 0.00 35.61 2.27
120 122 5.095490 CGGCTGCACCTTTTTCTTTTATAG 58.905 41.667 0.50 0.00 35.61 1.31
121 123 5.335661 CGGCTGCACCTTTTTCTTTTATAGT 60.336 40.000 0.50 0.00 35.61 2.12
124 126 8.085909 GGCTGCACCTTTTTCTTTTATAGTAAA 58.914 33.333 0.50 0.00 34.51 2.01
152 154 3.320826 TCCTGATCCGATTTCATTAGCGA 59.679 43.478 0.00 0.00 0.00 4.93
165 167 2.177394 TTAGCGATTCCAGTTGCACA 57.823 45.000 0.00 0.00 0.00 4.57
178 180 4.323485 CCAGTTGCACAAGGAGTAGGATTA 60.323 45.833 0.00 0.00 0.00 1.75
253 255 3.162147 TGCAGGGCTACATAAAAACCA 57.838 42.857 0.00 0.00 0.00 3.67
256 258 3.699038 GCAGGGCTACATAAAAACCATCA 59.301 43.478 0.00 0.00 0.00 3.07
257 259 4.159506 GCAGGGCTACATAAAAACCATCAA 59.840 41.667 0.00 0.00 0.00 2.57
258 260 5.163416 GCAGGGCTACATAAAAACCATCAAT 60.163 40.000 0.00 0.00 0.00 2.57
259 261 6.040391 GCAGGGCTACATAAAAACCATCAATA 59.960 38.462 0.00 0.00 0.00 1.90
260 262 7.651808 CAGGGCTACATAAAAACCATCAATAG 58.348 38.462 0.00 0.00 0.00 1.73
261 263 6.777580 AGGGCTACATAAAAACCATCAATAGG 59.222 38.462 0.00 0.00 0.00 2.57
262 264 6.447162 GGCTACATAAAAACCATCAATAGGC 58.553 40.000 0.00 0.00 0.00 3.93
263 265 6.040391 GGCTACATAAAAACCATCAATAGGCA 59.960 38.462 0.00 0.00 34.02 4.75
264 266 6.918022 GCTACATAAAAACCATCAATAGGCAC 59.082 38.462 0.00 0.00 0.00 5.01
265 267 7.201821 GCTACATAAAAACCATCAATAGGCACT 60.202 37.037 0.00 0.00 46.37 4.40
266 268 7.480760 ACATAAAAACCATCAATAGGCACTT 57.519 32.000 0.00 0.00 41.75 3.16
267 269 7.547227 ACATAAAAACCATCAATAGGCACTTC 58.453 34.615 0.00 0.00 41.75 3.01
268 270 4.701956 AAAACCATCAATAGGCACTTCG 57.298 40.909 0.00 0.00 41.75 3.79
269 271 3.627395 AACCATCAATAGGCACTTCGA 57.373 42.857 0.00 0.00 41.75 3.71
270 272 3.185246 ACCATCAATAGGCACTTCGAG 57.815 47.619 0.00 0.00 41.75 4.04
271 273 2.766263 ACCATCAATAGGCACTTCGAGA 59.234 45.455 0.00 0.00 41.75 4.04
272 274 3.197766 ACCATCAATAGGCACTTCGAGAA 59.802 43.478 0.00 0.00 41.75 2.87
273 275 4.191544 CCATCAATAGGCACTTCGAGAAA 58.808 43.478 0.00 0.00 41.75 2.52
274 276 4.818546 CCATCAATAGGCACTTCGAGAAAT 59.181 41.667 0.00 0.00 41.75 2.17
275 277 5.297776 CCATCAATAGGCACTTCGAGAAATT 59.702 40.000 0.00 0.00 41.75 1.82
276 278 6.425504 CATCAATAGGCACTTCGAGAAATTC 58.574 40.000 0.00 0.00 41.75 2.17
277 279 5.487433 TCAATAGGCACTTCGAGAAATTCA 58.513 37.500 0.00 0.00 41.75 2.57
278 280 5.937540 TCAATAGGCACTTCGAGAAATTCAA 59.062 36.000 0.00 0.00 41.75 2.69
279 281 6.429692 TCAATAGGCACTTCGAGAAATTCAAA 59.570 34.615 0.00 0.00 41.75 2.69
280 282 7.121168 TCAATAGGCACTTCGAGAAATTCAAAT 59.879 33.333 0.00 0.00 41.75 2.32
281 283 5.712152 AGGCACTTCGAGAAATTCAAATT 57.288 34.783 0.00 0.00 27.25 1.82
282 284 5.464168 AGGCACTTCGAGAAATTCAAATTG 58.536 37.500 0.00 0.00 27.25 2.32
283 285 4.090498 GGCACTTCGAGAAATTCAAATTGC 59.910 41.667 0.00 3.25 0.00 3.56
284 286 4.681025 GCACTTCGAGAAATTCAAATTGCA 59.319 37.500 10.69 0.00 0.00 4.08
285 287 5.346822 GCACTTCGAGAAATTCAAATTGCAT 59.653 36.000 10.69 0.00 0.00 3.96
286 288 6.669032 GCACTTCGAGAAATTCAAATTGCATG 60.669 38.462 10.69 0.00 0.00 4.06
287 289 6.583427 CACTTCGAGAAATTCAAATTGCATGA 59.417 34.615 0.00 0.00 0.00 3.07
288 290 6.583806 ACTTCGAGAAATTCAAATTGCATGAC 59.416 34.615 0.00 0.00 0.00 3.06
289 291 6.258230 TCGAGAAATTCAAATTGCATGACT 57.742 33.333 0.00 0.00 0.00 3.41
290 292 7.376435 TCGAGAAATTCAAATTGCATGACTA 57.624 32.000 0.00 0.00 0.00 2.59
291 293 7.243487 TCGAGAAATTCAAATTGCATGACTAC 58.757 34.615 0.00 0.00 0.00 2.73
292 294 7.022979 CGAGAAATTCAAATTGCATGACTACA 58.977 34.615 0.00 0.00 0.00 2.74
293 295 7.699391 CGAGAAATTCAAATTGCATGACTACAT 59.301 33.333 0.00 0.00 37.19 2.29
300 302 8.755696 TCAAATTGCATGACTACATAAAAACC 57.244 30.769 0.00 0.00 35.09 3.27
301 303 8.363390 TCAAATTGCATGACTACATAAAAACCA 58.637 29.630 0.00 0.00 35.09 3.67
302 304 9.153721 CAAATTGCATGACTACATAAAAACCAT 57.846 29.630 0.00 0.00 35.09 3.55
303 305 9.723601 AAATTGCATGACTACATAAAAACCATT 57.276 25.926 0.00 0.00 35.09 3.16
309 311 7.144722 TGACTACATAAAAACCATTGAGCAG 57.855 36.000 0.00 0.00 0.00 4.24
312 314 3.181397 CATAAAAACCATTGAGCAGGCG 58.819 45.455 0.00 0.00 0.00 5.52
320 322 0.250901 ATTGAGCAGGCGGTTTCAGT 60.251 50.000 0.00 0.00 0.00 3.41
328 330 0.040067 GGCGGTTTCAGTGCAAGAAG 60.040 55.000 0.00 0.00 0.00 2.85
329 331 0.661483 GCGGTTTCAGTGCAAGAAGC 60.661 55.000 8.03 8.03 45.96 3.86
367 370 2.045340 ATGCTAAAACGGCGGCCT 60.045 55.556 18.34 0.00 0.00 5.19
379 382 1.153168 GCGGCCTATTGAGAAGCCA 60.153 57.895 0.00 0.00 46.08 4.75
382 385 1.678728 CGGCCTATTGAGAAGCCACAA 60.679 52.381 0.00 0.00 46.08 3.33
392 395 4.469657 TGAGAAGCCACAACACCTTTATT 58.530 39.130 0.00 0.00 0.00 1.40
401 404 5.068460 CCACAACACCTTTATTTTGTCCTGA 59.932 40.000 0.00 0.00 29.65 3.86
423 426 2.556766 TGACTGGTCATGGGGATACAA 58.443 47.619 0.00 0.00 34.14 2.41
474 477 1.372087 GAGCGGAAAGGTGCCATCTG 61.372 60.000 0.00 0.00 0.00 2.90
485 488 3.260483 CCATCTGCACGAGCGAGC 61.260 66.667 5.37 5.37 46.23 5.03
489 492 0.316522 ATCTGCACGAGCGAGCATAT 59.683 50.000 14.73 10.68 46.23 1.78
491 494 1.541588 TCTGCACGAGCGAGCATATAT 59.458 47.619 14.73 0.00 46.23 0.86
549 552 1.202687 CGAGCCTAAAGCCATCATGGA 60.203 52.381 8.30 0.00 45.47 3.41
598 601 2.806945 CACCCTTGGACCACATACAT 57.193 50.000 0.00 0.00 0.00 2.29
609 612 2.368439 CCACATACATGGGGTGAACAG 58.632 52.381 13.25 0.00 46.40 3.16
622 625 2.876550 GGTGAACAGTTTGGGTCTACAC 59.123 50.000 0.00 0.00 0.00 2.90
642 645 1.196808 CTGTGGTGCCGTAATTGACAC 59.803 52.381 0.00 0.00 0.00 3.67
649 652 1.267532 GCCGTAATTGACACTCATGCG 60.268 52.381 0.00 0.00 0.00 4.73
682 685 1.499913 ATGGACCATGGCAGGACACA 61.500 55.000 13.04 0.74 0.00 3.72
692 695 0.104855 GCAGGACACATCGCTGGATA 59.895 55.000 0.00 0.00 0.00 2.59
694 697 2.029020 GCAGGACACATCGCTGGATATA 60.029 50.000 0.00 0.00 0.00 0.86
708 711 4.999950 GCTGGATATAGTCAACCCAATCTG 59.000 45.833 0.00 0.00 0.00 2.90
755 758 0.761802 CCTTGGTGATAGCTCCTCCC 59.238 60.000 0.21 0.00 0.00 4.30
793 796 4.450419 GCATGTGATGATGCCTACTTCTAC 59.550 45.833 0.00 0.00 42.57 2.59
811 814 1.885388 CAACTTCGTGTGGGCGTGA 60.885 57.895 0.00 0.00 0.00 4.35
842 845 2.678336 CCCAAGCTAATCTTTCGGTGTC 59.322 50.000 0.00 0.00 31.27 3.67
853 856 2.388310 TTCGGTGTCAACTTGTCACA 57.612 45.000 17.37 1.28 37.98 3.58
878 881 2.981302 CCGTGCACCCAGATGAGA 59.019 61.111 12.15 0.00 0.00 3.27
880 883 1.812922 CGTGCACCCAGATGAGAGC 60.813 63.158 12.15 0.00 0.00 4.09
890 893 2.169978 CCAGATGAGAGCACCATCTTCA 59.830 50.000 11.28 0.00 46.03 3.02
904 907 2.288961 TCTTCATTAGCGGGTCGTTC 57.711 50.000 0.00 0.00 0.00 3.95
909 912 2.603135 ATTAGCGGGTCGTTCGACGG 62.603 60.000 17.03 12.97 42.81 4.79
915 918 2.101770 GTCGTTCGACGGCCCTAG 59.898 66.667 9.50 0.00 40.90 3.02
916 919 2.360350 TCGTTCGACGGCCCTAGT 60.360 61.111 0.00 0.00 42.81 2.57
917 920 2.101770 CGTTCGACGGCCCTAGTC 59.898 66.667 0.00 0.00 38.08 2.59
933 936 3.452627 CCTAGTCTACCACCTTCAGCATT 59.547 47.826 0.00 0.00 0.00 3.56
958 961 3.860605 CCGATCCCGCCACCATCA 61.861 66.667 0.00 0.00 0.00 3.07
963 966 1.344953 ATCCCGCCACCATCAGCTTA 61.345 55.000 0.00 0.00 0.00 3.09
971 974 1.483827 CACCATCAGCTTAGAGGAGCA 59.516 52.381 0.00 0.00 45.12 4.26
1032 1035 0.668401 CCTTCACCGGACGTGGTTAC 60.668 60.000 9.46 0.00 41.38 2.50
1035 1038 0.752054 TCACCGGACGTGGTTACTTT 59.248 50.000 9.46 0.00 41.38 2.66
1053 1056 0.976641 TTGATCCTGAGTTGGACGCT 59.023 50.000 0.00 0.00 39.17 5.07
1083 1086 2.324014 TTTCCGCACAGCTGGACACT 62.324 55.000 19.93 0.00 32.92 3.55
1153 1156 3.654143 ATCAGCAGTGCCCAGCCA 61.654 61.111 12.58 0.00 0.00 4.75
1167 1170 3.190878 GCCATGAAGGTCGGCAAG 58.809 61.111 0.00 0.00 45.52 4.01
1190 1193 1.594331 AACTTGTTCAGCGAGTTCCC 58.406 50.000 0.00 0.00 46.13 3.97
1243 1246 0.034337 TACGGGTGGTGAGAGCAAAC 59.966 55.000 0.00 0.00 0.00 2.93
1280 1283 3.555139 GTCATCTACATGCAAGCTGACTC 59.445 47.826 18.43 1.94 37.22 3.36
1281 1284 2.284263 TCTACATGCAAGCTGACTCG 57.716 50.000 0.00 0.00 0.00 4.18
1285 1288 1.744368 ATGCAAGCTGACTCGGCTG 60.744 57.895 13.33 8.65 46.32 4.85
1288 1291 1.005748 CAAGCTGACTCGGCTGACA 60.006 57.895 13.33 0.00 46.32 3.58
1328 1331 3.082548 AGAAGAATGAGGACTTCGACGA 58.917 45.455 0.00 0.00 44.65 4.20
1339 1342 3.429822 GGACTTCGACGATGGGTTGAATA 60.430 47.826 14.41 0.00 45.71 1.75
1351 1354 6.317642 CGATGGGTTGAATAACACTTATTCCA 59.682 38.462 10.74 4.59 46.94 3.53
1365 1368 5.639506 CACTTATTCCAATGAGACGACTGTT 59.360 40.000 0.00 0.00 0.00 3.16
1368 1371 0.798776 CCAATGAGACGACTGTTGGC 59.201 55.000 13.02 0.00 34.26 4.52
1373 1376 3.112709 GACGACTGTTGGCGAGGC 61.113 66.667 0.00 0.00 0.00 4.70
1405 1408 7.274603 TCTGATGAGATGAATGAGTACTCTG 57.725 40.000 23.01 0.00 0.00 3.35
1408 1411 5.259832 TGAGATGAATGAGTACTCTGCTG 57.740 43.478 23.01 0.00 0.00 4.41
1417 1420 2.100584 GAGTACTCTGCTGATGAGGTGG 59.899 54.545 15.91 0.00 35.98 4.61
1419 1422 0.901124 ACTCTGCTGATGAGGTGGAC 59.099 55.000 0.00 0.00 35.98 4.02
1434 1437 1.137872 GTGGACGAGGAGCAAGATCAT 59.862 52.381 0.00 0.00 0.00 2.45
1440 1443 3.130516 ACGAGGAGCAAGATCATAAACGA 59.869 43.478 0.00 0.00 0.00 3.85
1449 1452 5.511377 GCAAGATCATAAACGATTTTTGCGA 59.489 36.000 0.00 0.00 36.95 5.10
1476 1479 6.070995 TGACGACCTTTTCACTTAGGTATGAT 60.071 38.462 0.00 0.00 44.65 2.45
1493 1496 5.186797 GGTATGATAGGAATGGAGACCTGAG 59.813 48.000 0.00 0.00 37.68 3.35
1533 1536 3.118542 CGTTCGGTACTATAGTTTGCCC 58.881 50.000 11.40 5.71 0.00 5.36
1538 1541 3.133362 CGGTACTATAGTTTGCCCCAAGA 59.867 47.826 11.40 0.00 0.00 3.02
1544 1547 6.786122 ACTATAGTTTGCCCCAAGAAGTTAA 58.214 36.000 0.00 0.00 0.00 2.01
1546 1549 4.871933 AGTTTGCCCCAAGAAGTTAATG 57.128 40.909 0.00 0.00 0.00 1.90
1548 1551 4.280929 AGTTTGCCCCAAGAAGTTAATGAC 59.719 41.667 0.00 0.00 0.00 3.06
1575 1578 2.643551 CTTGAGTATCCCGTGGCATTT 58.356 47.619 0.00 0.00 0.00 2.32
1589 1592 5.280945 CGTGGCATTTTGGATGTAATTAGG 58.719 41.667 0.00 0.00 0.00 2.69
1597 1600 8.694540 CATTTTGGATGTAATTAGGAACCATGA 58.305 33.333 0.00 0.00 0.00 3.07
1600 1603 8.837099 TTGGATGTAATTAGGAACCATGAATT 57.163 30.769 0.00 0.00 0.00 2.17
1668 1691 3.969117 TCACTTGCATGAACAACAGAC 57.031 42.857 6.60 0.00 0.00 3.51
1689 1720 2.310538 CATGGGTGGAGATTTAAGGCC 58.689 52.381 0.00 0.00 0.00 5.19
1709 1740 5.989777 AGGCCGATGTTATTTATGTAGTCAC 59.010 40.000 0.00 0.00 0.00 3.67
1711 1742 6.145696 GGCCGATGTTATTTATGTAGTCACTC 59.854 42.308 0.00 0.00 0.00 3.51
1742 1775 9.981114 AAATATTACCATGTATTTTGCTTAGCC 57.019 29.630 0.29 0.00 28.78 3.93
1755 1788 6.892658 TTTGCTTAGCCTTTCTGTATGAAA 57.107 33.333 0.29 0.00 41.85 2.69
1756 1789 6.892658 TTGCTTAGCCTTTCTGTATGAAAA 57.107 33.333 0.29 0.00 43.25 2.29
1773 1806 6.705863 ATGAAAATAATCTGCCTTCTGGAC 57.294 37.500 0.00 0.00 34.57 4.02
1819 1852 1.342819 GCACATGTTTGTTGCCCCTTA 59.657 47.619 0.00 0.00 32.34 2.69
1850 1883 0.666577 GTGTCTACCGCTCAAACGCT 60.667 55.000 0.00 0.00 0.00 5.07
1853 1886 0.669318 TCTACCGCTCAAACGCTTGG 60.669 55.000 0.00 0.00 33.01 3.61
1871 1904 2.040544 GGGGTGATGACAACAGCGG 61.041 63.158 8.56 0.00 35.07 5.52
1897 1930 4.007644 CGAGCACCTGCCCTCACA 62.008 66.667 0.00 0.00 43.38 3.58
1908 1941 0.107945 GCCCTCACACATCTCCAGTC 60.108 60.000 0.00 0.00 0.00 3.51
1976 2009 3.308530 CCAATCTTTTGGTGCGAAGTTC 58.691 45.455 0.00 0.00 46.27 3.01
1992 2025 5.972382 GCGAAGTTCATAGTACTCACCTTAG 59.028 44.000 0.00 0.00 0.00 2.18
2012 2045 2.560105 AGCCTTGCATTCTTTTGACTCC 59.440 45.455 0.00 0.00 0.00 3.85
2013 2046 2.560105 GCCTTGCATTCTTTTGACTCCT 59.440 45.455 0.00 0.00 0.00 3.69
2014 2047 3.366781 GCCTTGCATTCTTTTGACTCCTC 60.367 47.826 0.00 0.00 0.00 3.71
2015 2048 3.822735 CCTTGCATTCTTTTGACTCCTCA 59.177 43.478 0.00 0.00 0.00 3.86
2040 2073 4.864247 AGTGAATGAAAACAACACTGTTGC 59.136 37.500 19.86 6.15 45.25 4.17
2081 2114 5.048364 CACTTTCCGAATCCACAAATAACCA 60.048 40.000 0.00 0.00 0.00 3.67
2085 2118 6.687081 TCCGAATCCACAAATAACCATAAC 57.313 37.500 0.00 0.00 0.00 1.89
2104 2137 7.026562 CCATAACACGATGCTAACAAAAATGA 58.973 34.615 0.00 0.00 0.00 2.57
2144 2177 2.260822 ACAGCCAAGTCTGTCCACTAT 58.739 47.619 0.00 0.00 43.28 2.12
2151 2184 5.811100 GCCAAGTCTGTCCACTATAACTTAC 59.189 44.000 0.00 0.00 0.00 2.34
2190 2681 9.626045 TTATAAGATCTACAACAGACGCATATG 57.374 33.333 0.00 0.00 35.62 1.78
2191 2682 5.774498 AGATCTACAACAGACGCATATGA 57.226 39.130 6.97 0.00 35.62 2.15
2198 2689 6.735678 ACAACAGACGCATATGAAAACATA 57.264 33.333 6.97 0.00 0.00 2.29
2202 2693 5.353956 ACAGACGCATATGAAAACATAAGCA 59.646 36.000 6.97 0.00 33.01 3.91
2223 2714 2.715046 AGACATGCACCATTACCACTG 58.285 47.619 0.00 0.00 0.00 3.66
2233 2724 2.489329 CCATTACCACTGACCAAAGCAG 59.511 50.000 0.00 0.00 39.26 4.24
2240 2731 2.421424 CACTGACCAAAGCAGAATAGGC 59.579 50.000 0.00 0.00 36.86 3.93
2280 2771 7.815549 TGAGATTTATTACAACAGACGCTTACA 59.184 33.333 0.00 0.00 0.00 2.41
2304 2795 1.004595 CATGAGTGAGACATGCACCG 58.995 55.000 0.00 0.00 38.58 4.94
2310 2801 0.036765 TGAGACATGCACCGTTACCC 60.037 55.000 0.00 0.00 0.00 3.69
2316 2807 1.198759 ATGCACCGTTACCCCTGACT 61.199 55.000 0.00 0.00 0.00 3.41
2323 2814 2.618053 CGTTACCCCTGACTAAAGCTG 58.382 52.381 0.00 0.00 0.00 4.24
2326 2817 4.142004 CGTTACCCCTGACTAAAGCTGTAT 60.142 45.833 0.00 0.00 0.00 2.29
2407 2899 3.057174 ACTTGCCTTGAACGTTGAAACAA 60.057 39.130 5.00 10.24 0.00 2.83
2504 2996 1.693062 ACCTTTTGTTGCATGGCATCA 59.307 42.857 0.00 0.00 38.76 3.07
2579 3071 4.771903 ACCATAACCACAAACCAAAAACC 58.228 39.130 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.783093 CGAGTCCATGGCAAAATAATATTAAGA 58.217 33.333 6.96 0.00 0.00 2.10
45 46 5.179368 CGACGAGTCCATGGCAAAATAATAT 59.821 40.000 6.96 0.00 0.00 1.28
63 64 2.879646 AGCCTAACTAAGATCCGACGAG 59.120 50.000 0.00 0.00 0.00 4.18
65 66 5.373981 AATAGCCTAACTAAGATCCGACG 57.626 43.478 0.00 0.00 33.57 5.12
96 97 1.398692 AAAGAAAAAGGTGCAGCCGA 58.601 45.000 13.29 0.00 43.70 5.54
120 122 7.985476 TGAAATCGGATCAGGAATTCTTTTAC 58.015 34.615 5.23 0.00 0.00 2.01
121 123 8.752005 ATGAAATCGGATCAGGAATTCTTTTA 57.248 30.769 5.23 0.00 0.00 1.52
124 126 7.040823 GCTAATGAAATCGGATCAGGAATTCTT 60.041 37.037 5.23 0.00 0.00 2.52
128 130 4.692625 CGCTAATGAAATCGGATCAGGAAT 59.307 41.667 0.00 0.00 0.00 3.01
133 135 4.690748 GGAATCGCTAATGAAATCGGATCA 59.309 41.667 0.00 0.00 0.00 2.92
135 137 4.641396 TGGAATCGCTAATGAAATCGGAT 58.359 39.130 0.00 0.00 0.00 4.18
152 154 2.664402 ACTCCTTGTGCAACTGGAAT 57.336 45.000 0.00 0.00 39.02 3.01
216 218 4.334443 CCTGCAATTCAAATTCGAGTACG 58.666 43.478 0.00 0.00 41.26 3.67
217 219 4.662145 CCCTGCAATTCAAATTCGAGTAC 58.338 43.478 0.00 0.00 0.00 2.73
253 255 6.115446 TGAATTTCTCGAAGTGCCTATTGAT 58.885 36.000 0.00 0.00 0.00 2.57
256 258 6.817765 TTTGAATTTCTCGAAGTGCCTATT 57.182 33.333 0.00 0.00 0.00 1.73
257 259 7.253422 CAATTTGAATTTCTCGAAGTGCCTAT 58.747 34.615 0.00 0.00 36.87 2.57
258 260 6.611381 CAATTTGAATTTCTCGAAGTGCCTA 58.389 36.000 0.00 0.00 36.87 3.93
259 261 5.464168 CAATTTGAATTTCTCGAAGTGCCT 58.536 37.500 0.00 0.00 36.87 4.75
260 262 5.752098 CAATTTGAATTTCTCGAAGTGCC 57.248 39.130 0.00 0.00 36.87 5.01
262 264 6.583427 TCATGCAATTTGAATTTCTCGAAGTG 59.417 34.615 0.00 0.00 43.51 3.16
263 265 6.583806 GTCATGCAATTTGAATTTCTCGAAGT 59.416 34.615 0.00 0.00 30.60 3.01
264 266 6.805271 AGTCATGCAATTTGAATTTCTCGAAG 59.195 34.615 0.00 0.00 30.60 3.79
265 267 6.680810 AGTCATGCAATTTGAATTTCTCGAA 58.319 32.000 0.00 0.00 0.00 3.71
266 268 6.258230 AGTCATGCAATTTGAATTTCTCGA 57.742 33.333 0.00 0.00 0.00 4.04
267 269 7.022979 TGTAGTCATGCAATTTGAATTTCTCG 58.977 34.615 0.00 0.00 0.00 4.04
268 270 8.922058 ATGTAGTCATGCAATTTGAATTTCTC 57.078 30.769 0.00 0.00 32.51 2.87
274 276 9.202273 GGTTTTTATGTAGTCATGCAATTTGAA 57.798 29.630 0.00 0.00 35.70 2.69
275 277 8.363390 TGGTTTTTATGTAGTCATGCAATTTGA 58.637 29.630 0.00 0.00 35.70 2.69
276 278 8.531622 TGGTTTTTATGTAGTCATGCAATTTG 57.468 30.769 0.00 0.00 35.70 2.32
277 279 9.723601 AATGGTTTTTATGTAGTCATGCAATTT 57.276 25.926 0.00 0.00 35.70 1.82
278 280 9.153721 CAATGGTTTTTATGTAGTCATGCAATT 57.846 29.630 0.00 0.00 35.70 2.32
279 281 8.530311 TCAATGGTTTTTATGTAGTCATGCAAT 58.470 29.630 0.00 0.00 35.70 3.56
280 282 7.890515 TCAATGGTTTTTATGTAGTCATGCAA 58.109 30.769 0.00 0.00 35.70 4.08
281 283 7.459795 TCAATGGTTTTTATGTAGTCATGCA 57.540 32.000 0.00 0.00 35.70 3.96
282 284 6.473455 GCTCAATGGTTTTTATGTAGTCATGC 59.527 38.462 0.00 0.00 35.70 4.06
283 285 7.537715 TGCTCAATGGTTTTTATGTAGTCATG 58.462 34.615 0.00 0.00 35.70 3.07
284 286 7.148018 CCTGCTCAATGGTTTTTATGTAGTCAT 60.148 37.037 0.00 0.00 38.00 3.06
285 287 6.150976 CCTGCTCAATGGTTTTTATGTAGTCA 59.849 38.462 0.00 0.00 0.00 3.41
286 288 6.555315 CCTGCTCAATGGTTTTTATGTAGTC 58.445 40.000 0.00 0.00 0.00 2.59
287 289 5.105756 GCCTGCTCAATGGTTTTTATGTAGT 60.106 40.000 0.00 0.00 0.00 2.73
288 290 5.343249 GCCTGCTCAATGGTTTTTATGTAG 58.657 41.667 0.00 0.00 0.00 2.74
289 291 4.142491 CGCCTGCTCAATGGTTTTTATGTA 60.142 41.667 0.00 0.00 0.00 2.29
290 292 3.367292 CGCCTGCTCAATGGTTTTTATGT 60.367 43.478 0.00 0.00 0.00 2.29
291 293 3.181397 CGCCTGCTCAATGGTTTTTATG 58.819 45.455 0.00 0.00 0.00 1.90
292 294 2.166254 CCGCCTGCTCAATGGTTTTTAT 59.834 45.455 0.00 0.00 0.00 1.40
293 295 1.543802 CCGCCTGCTCAATGGTTTTTA 59.456 47.619 0.00 0.00 0.00 1.52
294 296 0.318120 CCGCCTGCTCAATGGTTTTT 59.682 50.000 0.00 0.00 0.00 1.94
295 297 0.827507 ACCGCCTGCTCAATGGTTTT 60.828 50.000 0.00 0.00 0.00 2.43
296 298 0.827507 AACCGCCTGCTCAATGGTTT 60.828 50.000 0.00 0.00 39.83 3.27
297 299 0.827507 AAACCGCCTGCTCAATGGTT 60.828 50.000 0.00 0.00 44.44 3.67
298 300 1.228552 AAACCGCCTGCTCAATGGT 60.229 52.632 0.00 0.00 33.45 3.55
299 301 1.243342 TGAAACCGCCTGCTCAATGG 61.243 55.000 0.00 0.00 0.00 3.16
300 302 0.169672 CTGAAACCGCCTGCTCAATG 59.830 55.000 0.00 0.00 0.00 2.82
301 303 0.250901 ACTGAAACCGCCTGCTCAAT 60.251 50.000 0.00 0.00 0.00 2.57
302 304 1.148273 ACTGAAACCGCCTGCTCAA 59.852 52.632 0.00 0.00 0.00 3.02
303 305 1.597854 CACTGAAACCGCCTGCTCA 60.598 57.895 0.00 0.00 0.00 4.26
309 311 0.040067 CTTCTTGCACTGAAACCGCC 60.040 55.000 0.00 0.00 0.00 6.13
312 314 1.032014 TGGCTTCTTGCACTGAAACC 58.968 50.000 11.91 11.91 45.15 3.27
320 322 0.178938 TTCCCCATTGGCTTCTTGCA 60.179 50.000 0.00 0.00 45.15 4.08
348 351 2.403378 GGCCGCCGTTTTAGCATGA 61.403 57.895 0.00 0.00 0.00 3.07
361 364 1.153168 TGGCTTCTCAATAGGCCGC 60.153 57.895 0.00 0.00 46.72 6.53
362 365 0.107703 TGTGGCTTCTCAATAGGCCG 60.108 55.000 0.00 0.00 46.72 6.13
367 370 3.788227 AGGTGTTGTGGCTTCTCAATA 57.212 42.857 0.00 0.00 0.00 1.90
379 382 6.783708 TTCAGGACAAAATAAAGGTGTTGT 57.216 33.333 0.00 0.00 36.92 3.32
382 385 6.777580 AGTCATTCAGGACAAAATAAAGGTGT 59.222 34.615 0.00 0.00 40.29 4.16
392 395 3.855255 TGACCAGTCATTCAGGACAAA 57.145 42.857 0.00 0.00 40.29 2.83
439 442 0.237235 GCTCGTCGCCAAATGTCAAA 59.763 50.000 0.00 0.00 0.00 2.69
474 477 2.599082 GGTAATATATGCTCGCTCGTGC 59.401 50.000 9.08 9.08 35.46 5.34
478 481 4.505922 GCAGATGGTAATATATGCTCGCTC 59.494 45.833 0.00 0.00 40.96 5.03
485 488 7.543172 GCAAAACATGGCAGATGGTAATATATG 59.457 37.037 0.00 0.00 0.00 1.78
489 492 4.955450 AGCAAAACATGGCAGATGGTAATA 59.045 37.500 0.00 0.00 0.00 0.98
491 494 3.164268 AGCAAAACATGGCAGATGGTAA 58.836 40.909 0.00 0.00 0.00 2.85
535 538 4.710865 TCAAAAGCATCCATGATGGCTTTA 59.289 37.500 22.08 11.18 41.05 1.85
549 552 5.049267 GCCAAAATCATGTTGTCAAAAGCAT 60.049 36.000 0.00 0.00 0.00 3.79
598 601 0.106419 GACCCAAACTGTTCACCCCA 60.106 55.000 0.00 0.00 0.00 4.96
602 605 3.560068 CAGTGTAGACCCAAACTGTTCAC 59.440 47.826 0.00 0.00 36.20 3.18
609 612 2.218603 CACCACAGTGTAGACCCAAAC 58.781 52.381 0.00 0.00 39.30 2.93
622 625 1.196808 GTGTCAATTACGGCACCACAG 59.803 52.381 0.00 0.00 0.00 3.66
642 645 1.091771 AATGAAGGTCCGCGCATGAG 61.092 55.000 8.75 0.00 0.00 2.90
649 652 1.947456 GGTCCATTAATGAAGGTCCGC 59.053 52.381 17.23 0.00 0.00 5.54
682 685 3.239449 TGGGTTGACTATATCCAGCGAT 58.761 45.455 0.00 0.00 0.00 4.58
692 695 4.079558 AGGAATGCAGATTGGGTTGACTAT 60.080 41.667 0.00 0.00 0.00 2.12
694 697 2.042162 AGGAATGCAGATTGGGTTGACT 59.958 45.455 0.00 0.00 0.00 3.41
708 711 1.588082 CTGCCACCAACAGGAATGC 59.412 57.895 0.00 0.00 0.00 3.56
755 758 0.602106 CATGCCTGGTAGAGCATCCG 60.602 60.000 0.00 0.00 46.58 4.18
793 796 1.227999 ATCACGCCCACACGAAGTTG 61.228 55.000 0.00 0.00 41.61 3.16
828 831 5.235616 GTGACAAGTTGACACCGAAAGATTA 59.764 40.000 22.70 0.00 37.13 1.75
837 840 2.851195 AGGATGTGACAAGTTGACACC 58.149 47.619 27.65 17.00 41.17 4.16
842 845 2.352651 CGGCATAGGATGTGACAAGTTG 59.647 50.000 0.00 0.00 0.00 3.16
853 856 2.329539 CTGGGTGCACGGCATAGGAT 62.330 60.000 11.45 0.00 41.91 3.24
878 881 1.475751 CCCGCTAATGAAGATGGTGCT 60.476 52.381 0.00 0.00 0.00 4.40
880 883 2.213499 GACCCGCTAATGAAGATGGTG 58.787 52.381 0.00 0.00 32.48 4.17
890 893 1.226491 CGTCGAACGACCCGCTAAT 60.226 57.895 19.15 0.00 46.05 1.73
904 907 1.452651 TGGTAGACTAGGGCCGTCG 60.453 63.158 0.00 0.00 36.53 5.12
909 912 1.757699 CTGAAGGTGGTAGACTAGGGC 59.242 57.143 0.00 0.00 0.00 5.19
913 916 5.482526 TGTTAATGCTGAAGGTGGTAGACTA 59.517 40.000 0.00 0.00 0.00 2.59
914 917 4.286032 TGTTAATGCTGAAGGTGGTAGACT 59.714 41.667 0.00 0.00 0.00 3.24
915 918 4.392138 GTGTTAATGCTGAAGGTGGTAGAC 59.608 45.833 0.00 0.00 0.00 2.59
916 919 4.041075 TGTGTTAATGCTGAAGGTGGTAGA 59.959 41.667 0.00 0.00 0.00 2.59
917 920 4.323417 TGTGTTAATGCTGAAGGTGGTAG 58.677 43.478 0.00 0.00 0.00 3.18
933 936 1.078988 GGCGGGATCGGTTGTGTTA 60.079 57.895 0.00 0.00 36.79 2.41
958 961 2.093235 GGTTCACATGCTCCTCTAAGCT 60.093 50.000 0.00 0.00 42.94 3.74
963 966 0.908198 GAGGGTTCACATGCTCCTCT 59.092 55.000 10.99 0.00 40.45 3.69
971 974 1.271597 GCTTCCACTGAGGGTTCACAT 60.272 52.381 0.00 0.00 38.24 3.21
1009 1012 3.552384 ACGTCCGGTGAAGGGCAA 61.552 61.111 0.00 0.00 35.10 4.52
1020 1023 1.997606 GGATCAAAGTAACCACGTCCG 59.002 52.381 0.00 0.00 0.00 4.79
1032 1035 1.734465 GCGTCCAACTCAGGATCAAAG 59.266 52.381 0.00 0.00 40.42 2.77
1035 1038 0.976641 AAGCGTCCAACTCAGGATCA 59.023 50.000 0.00 0.00 40.42 2.92
1053 1056 2.915137 GCGGAAAGCCCAACCCAA 60.915 61.111 0.00 0.00 40.81 4.12
1083 1086 2.092267 ACATGAGCAGATGTGGCCAATA 60.092 45.455 7.24 0.00 35.17 1.90
1127 1130 1.211969 CACTGCTGATGGCTTGTGC 59.788 57.895 0.00 0.00 42.39 4.57
1153 1156 0.984230 TTCTCCTTGCCGACCTTCAT 59.016 50.000 0.00 0.00 0.00 2.57
1167 1170 2.156343 ACTCGCTGAACAAGTTCTCC 57.844 50.000 13.49 4.45 40.14 3.71
1176 1179 1.009389 CGTCTGGGAACTCGCTGAAC 61.009 60.000 5.18 1.15 38.18 3.18
1179 1182 1.153939 CTCGTCTGGGAACTCGCTG 60.154 63.158 0.00 0.00 0.00 5.18
1180 1183 1.303398 TCTCGTCTGGGAACTCGCT 60.303 57.895 0.00 0.00 0.00 4.93
1190 1193 1.107114 ACCTATGTGCCTCTCGTCTG 58.893 55.000 0.00 0.00 0.00 3.51
1265 1268 2.037136 GCCGAGTCAGCTTGCATGT 61.037 57.895 1.14 0.00 0.00 3.21
1285 1288 4.005650 TCATCAGATTCAGTTGGCTTGTC 58.994 43.478 0.00 0.00 0.00 3.18
1288 1291 4.564782 TCTCATCAGATTCAGTTGGCTT 57.435 40.909 0.00 0.00 0.00 4.35
1339 1342 5.639506 CAGTCGTCTCATTGGAATAAGTGTT 59.360 40.000 0.00 0.00 0.00 3.32
1351 1354 0.317160 TCGCCAACAGTCGTCTCATT 59.683 50.000 0.00 0.00 0.00 2.57
1365 1368 4.838152 GAATCAGCCGCCTCGCCA 62.838 66.667 0.00 0.00 0.00 5.69
1368 1371 1.068753 ATCAGAATCAGCCGCCTCG 59.931 57.895 0.00 0.00 0.00 4.63
1373 1376 3.382048 TCATCTCATCAGAATCAGCCG 57.618 47.619 0.00 0.00 30.24 5.52
1375 1378 5.992829 ACTCATTCATCTCATCAGAATCAGC 59.007 40.000 0.00 0.00 30.04 4.26
1376 1379 8.361889 AGTACTCATTCATCTCATCAGAATCAG 58.638 37.037 0.00 0.00 30.04 2.90
1377 1380 8.247666 AGTACTCATTCATCTCATCAGAATCA 57.752 34.615 0.00 0.00 30.04 2.57
1378 1381 8.579006 AGAGTACTCATTCATCTCATCAGAATC 58.421 37.037 24.44 0.00 30.04 2.52
1379 1382 8.361889 CAGAGTACTCATTCATCTCATCAGAAT 58.638 37.037 24.44 0.00 32.53 2.40
1380 1383 7.683945 GCAGAGTACTCATTCATCTCATCAGAA 60.684 40.741 24.44 0.00 30.24 3.02
1381 1384 6.238981 GCAGAGTACTCATTCATCTCATCAGA 60.239 42.308 24.44 0.00 0.00 3.27
1405 1408 1.142748 CCTCGTCCACCTCATCAGC 59.857 63.158 0.00 0.00 0.00 4.26
1408 1411 1.323271 TGCTCCTCGTCCACCTCATC 61.323 60.000 0.00 0.00 0.00 2.92
1417 1420 3.487574 CGTTTATGATCTTGCTCCTCGTC 59.512 47.826 0.00 0.00 0.00 4.20
1419 1422 3.706698 TCGTTTATGATCTTGCTCCTCG 58.293 45.455 0.00 0.00 0.00 4.63
1434 1437 4.841841 GTCGTCAATCGCAAAAATCGTTTA 59.158 37.500 0.00 0.00 39.67 2.01
1440 1443 3.915437 AAGGTCGTCAATCGCAAAAAT 57.085 38.095 0.00 0.00 39.67 1.82
1449 1452 4.969484 ACCTAAGTGAAAAGGTCGTCAAT 58.031 39.130 0.00 0.00 42.60 2.57
1476 1479 4.026744 CAGTTCTCAGGTCTCCATTCCTA 58.973 47.826 0.00 0.00 32.26 2.94
1512 1515 3.118542 GGGCAAACTATAGTACCGAACG 58.881 50.000 5.65 0.00 0.00 3.95
1533 1536 4.872691 AGCATCGAGTCATTAACTTCTTGG 59.127 41.667 0.00 0.00 38.74 3.61
1538 1541 5.482908 ACTCAAGCATCGAGTCATTAACTT 58.517 37.500 0.00 0.00 39.56 2.66
1544 1547 3.006323 GGGATACTCAAGCATCGAGTCAT 59.994 47.826 6.03 0.81 42.69 3.06
1546 1549 2.605823 CGGGATACTCAAGCATCGAGTC 60.606 54.545 6.03 0.00 42.69 3.36
1548 1551 1.338337 ACGGGATACTCAAGCATCGAG 59.662 52.381 0.00 0.00 36.53 4.04
1575 1578 8.837099 AATTCATGGTTCCTAATTACATCCAA 57.163 30.769 0.00 0.00 0.00 3.53
1589 1592 4.805192 ACGCAATATGCAAATTCATGGTTC 59.195 37.500 2.99 0.00 45.36 3.62
1597 1600 9.131416 CATATTATGTGACGCAATATGCAAATT 57.869 29.630 12.85 0.00 45.36 1.82
1600 1603 6.349197 CCCATATTATGTGACGCAATATGCAA 60.349 38.462 17.02 0.00 45.36 4.08
1650 1673 2.653726 TGGTCTGTTGTTCATGCAAGT 58.346 42.857 0.00 0.00 0.00 3.16
1716 1747 9.981114 GGCTAAGCAAAATACATGGTAATATTT 57.019 29.630 0.00 0.00 33.40 1.40
1717 1748 9.367160 AGGCTAAGCAAAATACATGGTAATATT 57.633 29.630 0.00 0.00 0.00 1.28
1718 1749 8.940397 AGGCTAAGCAAAATACATGGTAATAT 57.060 30.769 0.00 0.00 0.00 1.28
1720 1751 7.660030 AAGGCTAAGCAAAATACATGGTAAT 57.340 32.000 0.00 0.00 0.00 1.89
1722 1753 6.889722 AGAAAGGCTAAGCAAAATACATGGTA 59.110 34.615 0.00 0.00 0.00 3.25
1723 1754 5.716703 AGAAAGGCTAAGCAAAATACATGGT 59.283 36.000 0.00 0.00 0.00 3.55
1724 1755 6.038356 CAGAAAGGCTAAGCAAAATACATGG 58.962 40.000 0.00 0.00 0.00 3.66
1725 1756 6.624423 ACAGAAAGGCTAAGCAAAATACATG 58.376 36.000 0.00 0.00 0.00 3.21
1729 1762 8.574251 TTCATACAGAAAGGCTAAGCAAAATA 57.426 30.769 0.00 0.00 32.05 1.40
1742 1775 9.727627 GAAGGCAGATTATTTTCATACAGAAAG 57.272 33.333 0.00 0.00 46.24 2.62
1755 1788 6.248433 TGAAAAGTCCAGAAGGCAGATTATT 58.752 36.000 0.00 0.00 33.74 1.40
1756 1789 5.819991 TGAAAAGTCCAGAAGGCAGATTAT 58.180 37.500 0.00 0.00 33.74 1.28
1773 1806 8.080417 CACAATCCCATGCTTATAGATGAAAAG 58.920 37.037 0.00 0.00 0.00 2.27
1819 1852 1.212935 GGTAGACACCATGAGGCCATT 59.787 52.381 5.01 0.00 45.04 3.16
1846 1879 2.063015 TTGTCATCACCCCCAAGCGT 62.063 55.000 0.00 0.00 0.00 5.07
1847 1880 1.303236 TTGTCATCACCCCCAAGCG 60.303 57.895 0.00 0.00 0.00 4.68
1850 1883 0.539438 GCTGTTGTCATCACCCCCAA 60.539 55.000 0.00 0.00 0.00 4.12
1853 1886 2.040544 CCGCTGTTGTCATCACCCC 61.041 63.158 0.00 0.00 0.00 4.95
1897 1930 0.901124 GCCTCACTGACTGGAGATGT 59.099 55.000 0.00 0.00 32.87 3.06
1976 2009 4.141937 TGCAAGGCTAAGGTGAGTACTATG 60.142 45.833 0.00 0.00 0.00 2.23
1992 2025 2.560105 AGGAGTCAAAAGAATGCAAGGC 59.440 45.455 0.00 0.00 0.00 4.35
2012 2045 7.642669 ACAGTGTTGTTTTCATTCACTATGAG 58.357 34.615 0.00 0.00 38.23 2.90
2013 2046 7.566760 ACAGTGTTGTTTTCATTCACTATGA 57.433 32.000 0.00 0.00 40.44 2.15
2014 2047 7.306167 GCAACAGTGTTGTTTTCATTCACTATG 60.306 37.037 31.12 6.57 45.01 2.23
2015 2048 6.697019 GCAACAGTGTTGTTTTCATTCACTAT 59.303 34.615 31.12 0.00 45.01 2.12
2056 2089 3.575965 ATTTGTGGATTCGGAAAGTGC 57.424 42.857 0.00 0.00 0.00 4.40
2065 2098 7.079182 TCGTGTTATGGTTATTTGTGGATTC 57.921 36.000 0.00 0.00 0.00 2.52
2081 2114 7.220683 GCATCATTTTTGTTAGCATCGTGTTAT 59.779 33.333 0.00 0.00 0.00 1.89
2085 2118 4.858140 TGCATCATTTTTGTTAGCATCGTG 59.142 37.500 0.00 0.00 0.00 4.35
2104 2137 5.634859 GCTGTAAGTTGCTAAAAATGTGCAT 59.365 36.000 0.00 0.00 36.55 3.96
2173 2664 6.164408 TGTTTTCATATGCGTCTGTTGTAG 57.836 37.500 0.00 0.00 0.00 2.74
2202 2693 3.084039 CAGTGGTAATGGTGCATGTCTT 58.916 45.455 0.00 0.00 0.00 3.01
2253 2744 7.849804 AAGCGTCTGTTGTAATAAATCTCAT 57.150 32.000 0.00 0.00 0.00 2.90
2280 2771 4.261741 GGTGCATGTCTCACTCATGTTTTT 60.262 41.667 0.00 0.00 42.94 1.94
2304 2795 3.697619 ACAGCTTTAGTCAGGGGTAAC 57.302 47.619 0.00 0.00 0.00 2.50
2310 2801 7.907214 AGTTTGTTATACAGCTTTAGTCAGG 57.093 36.000 0.00 0.00 0.00 3.86
2350 2841 3.243636 GGCATGGGATTTCTGTTATGCAG 60.244 47.826 0.00 0.00 46.34 4.41
2358 2850 4.878439 CATGTATTGGCATGGGATTTCTG 58.122 43.478 0.00 0.00 41.70 3.02
2390 2882 7.433719 TGACATATTTTGTTTCAACGTTCAAGG 59.566 33.333 0.00 0.00 39.18 3.61
2398 2890 9.301153 AGTTGACTTGACATATTTTGTTTCAAC 57.699 29.630 0.00 0.00 40.28 3.18
2459 2951 9.433153 GTTATGAAGAAGATGATGCATATCTGA 57.567 33.333 15.15 0.00 35.20 3.27
2504 2996 4.553323 GATGTGCTTTCTTGAGTTGCATT 58.447 39.130 0.00 0.00 36.04 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.