Multiple sequence alignment - TraesCS6A01G135600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G135600 | chr6A | 100.000 | 4646 | 0 | 0 | 1 | 4646 | 107213458 | 107218103 | 0.000000e+00 | 8580.0 |
1 | TraesCS6A01G135600 | chr6A | 79.992 | 2664 | 486 | 38 | 993 | 3624 | 107681397 | 107684045 | 0.000000e+00 | 1923.0 |
2 | TraesCS6A01G135600 | chr6A | 78.971 | 2701 | 502 | 44 | 995 | 3649 | 107243379 | 107246059 | 0.000000e+00 | 1781.0 |
3 | TraesCS6A01G135600 | chr6A | 80.338 | 1658 | 298 | 22 | 2010 | 3649 | 107270618 | 107272265 | 0.000000e+00 | 1230.0 |
4 | TraesCS6A01G135600 | chr6A | 79.661 | 1062 | 199 | 12 | 1063 | 2114 | 107269524 | 107270578 | 0.000000e+00 | 749.0 |
5 | TraesCS6A01G135600 | chr6B | 95.107 | 3127 | 139 | 7 | 808 | 3921 | 171028995 | 171032120 | 0.000000e+00 | 4915.0 |
6 | TraesCS6A01G135600 | chr6B | 79.867 | 2548 | 473 | 32 | 993 | 3511 | 171700041 | 171702577 | 0.000000e+00 | 1827.0 |
7 | TraesCS6A01G135600 | chr6B | 79.245 | 2703 | 487 | 48 | 995 | 3649 | 171182709 | 171185385 | 0.000000e+00 | 1816.0 |
8 | TraesCS6A01G135600 | chr6B | 80.109 | 1654 | 301 | 21 | 2010 | 3649 | 171206070 | 171207709 | 0.000000e+00 | 1206.0 |
9 | TraesCS6A01G135600 | chr6B | 88.727 | 754 | 51 | 7 | 3920 | 4643 | 171032577 | 171033326 | 0.000000e+00 | 891.0 |
10 | TraesCS6A01G135600 | chr6B | 80.669 | 1076 | 189 | 14 | 1000 | 2064 | 171204913 | 171205980 | 0.000000e+00 | 817.0 |
11 | TraesCS6A01G135600 | chr6B | 85.897 | 78 | 8 | 1 | 3847 | 3921 | 171031956 | 171032033 | 3.850000e-11 | 80.5 |
12 | TraesCS6A01G135600 | chr6D | 94.792 | 2976 | 131 | 11 | 400 | 3365 | 89067859 | 89070820 | 0.000000e+00 | 4615.0 |
13 | TraesCS6A01G135600 | chr6D | 80.727 | 2449 | 437 | 31 | 1218 | 3649 | 89166897 | 89169327 | 0.000000e+00 | 1875.0 |
14 | TraesCS6A01G135600 | chr6D | 79.458 | 1587 | 308 | 16 | 1529 | 3106 | 89301360 | 89302937 | 0.000000e+00 | 1109.0 |
15 | TraesCS6A01G135600 | chr6D | 81.023 | 606 | 91 | 13 | 3008 | 3592 | 89305997 | 89306599 | 1.180000e-125 | 460.0 |
16 | TraesCS6A01G135600 | chr6D | 90.233 | 215 | 18 | 2 | 5 | 217 | 89067527 | 89067740 | 1.270000e-70 | 278.0 |
17 | TraesCS6A01G135600 | chr7A | 78.805 | 1991 | 372 | 27 | 1669 | 3619 | 732158018 | 732156038 | 0.000000e+00 | 1293.0 |
18 | TraesCS6A01G135600 | chrUn | 79.158 | 1828 | 355 | 23 | 1292 | 3106 | 325921085 | 325919271 | 0.000000e+00 | 1242.0 |
19 | TraesCS6A01G135600 | chrUn | 79.502 | 1766 | 344 | 16 | 993 | 2749 | 335904613 | 335906369 | 0.000000e+00 | 1240.0 |
20 | TraesCS6A01G135600 | chrUn | 79.502 | 1766 | 344 | 16 | 993 | 2749 | 335907295 | 335909051 | 0.000000e+00 | 1240.0 |
21 | TraesCS6A01G135600 | chrUn | 79.456 | 1470 | 284 | 16 | 1289 | 2749 | 394420116 | 394421576 | 0.000000e+00 | 1026.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G135600 | chr6A | 107213458 | 107218103 | 4645 | False | 8580.000000 | 8580 | 100.000000 | 1 | 4646 | 1 | chr6A.!!$F1 | 4645 |
1 | TraesCS6A01G135600 | chr6A | 107681397 | 107684045 | 2648 | False | 1923.000000 | 1923 | 79.992000 | 993 | 3624 | 1 | chr6A.!!$F3 | 2631 |
2 | TraesCS6A01G135600 | chr6A | 107243379 | 107246059 | 2680 | False | 1781.000000 | 1781 | 78.971000 | 995 | 3649 | 1 | chr6A.!!$F2 | 2654 |
3 | TraesCS6A01G135600 | chr6A | 107269524 | 107272265 | 2741 | False | 989.500000 | 1230 | 79.999500 | 1063 | 3649 | 2 | chr6A.!!$F4 | 2586 |
4 | TraesCS6A01G135600 | chr6B | 171028995 | 171033326 | 4331 | False | 1962.166667 | 4915 | 89.910333 | 808 | 4643 | 3 | chr6B.!!$F3 | 3835 |
5 | TraesCS6A01G135600 | chr6B | 171700041 | 171702577 | 2536 | False | 1827.000000 | 1827 | 79.867000 | 993 | 3511 | 1 | chr6B.!!$F2 | 2518 |
6 | TraesCS6A01G135600 | chr6B | 171182709 | 171185385 | 2676 | False | 1816.000000 | 1816 | 79.245000 | 995 | 3649 | 1 | chr6B.!!$F1 | 2654 |
7 | TraesCS6A01G135600 | chr6B | 171204913 | 171207709 | 2796 | False | 1011.500000 | 1206 | 80.389000 | 1000 | 3649 | 2 | chr6B.!!$F4 | 2649 |
8 | TraesCS6A01G135600 | chr6D | 89067527 | 89070820 | 3293 | False | 2446.500000 | 4615 | 92.512500 | 5 | 3365 | 2 | chr6D.!!$F2 | 3360 |
9 | TraesCS6A01G135600 | chr6D | 89166897 | 89169327 | 2430 | False | 1875.000000 | 1875 | 80.727000 | 1218 | 3649 | 1 | chr6D.!!$F1 | 2431 |
10 | TraesCS6A01G135600 | chr6D | 89301360 | 89306599 | 5239 | False | 784.500000 | 1109 | 80.240500 | 1529 | 3592 | 2 | chr6D.!!$F3 | 2063 |
11 | TraesCS6A01G135600 | chr7A | 732156038 | 732158018 | 1980 | True | 1293.000000 | 1293 | 78.805000 | 1669 | 3619 | 1 | chr7A.!!$R1 | 1950 |
12 | TraesCS6A01G135600 | chrUn | 325919271 | 325921085 | 1814 | True | 1242.000000 | 1242 | 79.158000 | 1292 | 3106 | 1 | chrUn.!!$R1 | 1814 |
13 | TraesCS6A01G135600 | chrUn | 335904613 | 335909051 | 4438 | False | 1240.000000 | 1240 | 79.502000 | 993 | 2749 | 2 | chrUn.!!$F2 | 1756 |
14 | TraesCS6A01G135600 | chrUn | 394420116 | 394421576 | 1460 | False | 1026.000000 | 1026 | 79.456000 | 1289 | 2749 | 1 | chrUn.!!$F1 | 1460 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
899 | 931 | 0.034896 | CATATACCCCGCCCAGTGAC | 59.965 | 60.000 | 0.00 | 0.0 | 0.00 | 3.67 | F |
1086 | 1130 | 1.338200 | CCGGAAGCAGAAGCACTACTT | 60.338 | 52.381 | 0.00 | 0.0 | 45.49 | 2.24 | F |
1215 | 1262 | 2.346803 | GAGCTCCAACTTCATAACGCA | 58.653 | 47.619 | 0.87 | 0.0 | 0.00 | 5.24 | F |
2444 | 2792 | 1.168714 | GCAGTTCTTAAGGTGGCTGG | 58.831 | 55.000 | 1.85 | 0.0 | 0.00 | 4.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1825 | 1872 | 0.768221 | TGAAGCTCCCCAAGTGAGGT | 60.768 | 55.000 | 0.00 | 0.0 | 42.05 | 3.85 | R |
2318 | 2654 | 2.512515 | CTGCAGTAAGCTCGCCCC | 60.513 | 66.667 | 5.25 | 0.0 | 45.94 | 5.80 | R |
2461 | 2827 | 2.957402 | AAGGCAGACAATGGTTCTGA | 57.043 | 45.000 | 5.21 | 0.0 | 33.65 | 3.27 | R |
3767 | 9380 | 0.036765 | TGAGACATGCACCGTTACCC | 60.037 | 55.000 | 0.00 | 0.0 | 0.00 | 3.69 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
36 | 37 | 4.946157 | GGATCAGGCTTTGATTCTCTGAAA | 59.054 | 41.667 | 5.86 | 0.00 | 46.51 | 2.69 |
42 | 43 | 7.066645 | TCAGGCTTTGATTCTCTGAAATATGTG | 59.933 | 37.037 | 0.00 | 0.00 | 32.36 | 3.21 |
71 | 72 | 6.620678 | ACAGTTATGTATGTTTCATGGTTGC | 58.379 | 36.000 | 0.00 | 0.00 | 38.09 | 4.17 |
102 | 105 | 2.989422 | TTTTCGAGCTTTGCTTAGGC | 57.011 | 45.000 | 0.00 | 0.00 | 39.88 | 3.93 |
105 | 108 | 0.528924 | TCGAGCTTTGCTTAGGCGTA | 59.471 | 50.000 | 0.00 | 0.00 | 39.88 | 4.42 |
119 | 122 | 5.766222 | CTTAGGCGTATTTGTATAGTCGGT | 58.234 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
130 | 133 | 3.951680 | TGTATAGTCGGTCATGAGCTCAA | 59.048 | 43.478 | 22.50 | 1.31 | 0.00 | 3.02 |
132 | 135 | 0.969149 | AGTCGGTCATGAGCTCAACA | 59.031 | 50.000 | 22.50 | 7.23 | 0.00 | 3.33 |
140 | 143 | 2.093288 | TCATGAGCTCAACACCATCCTC | 60.093 | 50.000 | 22.50 | 0.00 | 0.00 | 3.71 |
146 | 149 | 1.484240 | CTCAACACCATCCTCCTCTCC | 59.516 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
164 | 167 | 2.045926 | GGCAGCCAGACCATCGTT | 60.046 | 61.111 | 6.55 | 0.00 | 0.00 | 3.85 |
172 | 175 | 2.656002 | CCAGACCATCGTTCTCTCCTA | 58.344 | 52.381 | 0.00 | 0.00 | 0.00 | 2.94 |
191 | 194 | 0.694771 | ATGAGGCTGTGACCACATGT | 59.305 | 50.000 | 3.06 | 0.00 | 39.24 | 3.21 |
225 | 250 | 2.415010 | CTGCCGGAGACCTCATCG | 59.585 | 66.667 | 5.05 | 0.00 | 0.00 | 3.84 |
232 | 257 | 1.330655 | GGAGACCTCATCGCCCTCAA | 61.331 | 60.000 | 0.00 | 0.00 | 41.31 | 3.02 |
243 | 271 | 1.746615 | GCCCTCAAGCTGCGATCAA | 60.747 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
267 | 295 | 0.868186 | GAGGATCCTAAGGAGGGGGA | 59.132 | 60.000 | 16.16 | 0.00 | 43.94 | 4.81 |
277 | 305 | 1.019650 | AGGAGGGGGAGTAGATGTGT | 58.980 | 55.000 | 0.00 | 0.00 | 0.00 | 3.72 |
278 | 306 | 1.366435 | AGGAGGGGGAGTAGATGTGTT | 59.634 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
279 | 307 | 2.197465 | GGAGGGGGAGTAGATGTGTTT | 58.803 | 52.381 | 0.00 | 0.00 | 0.00 | 2.83 |
280 | 308 | 2.092914 | GGAGGGGGAGTAGATGTGTTTG | 60.093 | 54.545 | 0.00 | 0.00 | 0.00 | 2.93 |
281 | 309 | 2.572104 | GAGGGGGAGTAGATGTGTTTGT | 59.428 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
284 | 312 | 4.141018 | AGGGGGAGTAGATGTGTTTGTTTT | 60.141 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
285 | 313 | 4.587262 | GGGGGAGTAGATGTGTTTGTTTTT | 59.413 | 41.667 | 0.00 | 0.00 | 0.00 | 1.94 |
287 | 315 | 5.300792 | GGGGAGTAGATGTGTTTGTTTTTCA | 59.699 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
288 | 316 | 6.015434 | GGGGAGTAGATGTGTTTGTTTTTCAT | 60.015 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
289 | 317 | 7.084486 | GGGAGTAGATGTGTTTGTTTTTCATC | 58.916 | 38.462 | 0.00 | 0.00 | 36.25 | 2.92 |
290 | 318 | 7.084486 | GGAGTAGATGTGTTTGTTTTTCATCC | 58.916 | 38.462 | 0.00 | 0.00 | 36.54 | 3.51 |
292 | 320 | 6.777580 | AGTAGATGTGTTTGTTTTTCATCCCT | 59.222 | 34.615 | 0.00 | 0.00 | 36.54 | 4.20 |
293 | 321 | 6.484364 | AGATGTGTTTGTTTTTCATCCCTT | 57.516 | 33.333 | 0.00 | 0.00 | 36.54 | 3.95 |
295 | 323 | 6.986231 | AGATGTGTTTGTTTTTCATCCCTTTC | 59.014 | 34.615 | 0.00 | 0.00 | 36.54 | 2.62 |
296 | 324 | 6.293004 | TGTGTTTGTTTTTCATCCCTTTCT | 57.707 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
297 | 325 | 6.105333 | TGTGTTTGTTTTTCATCCCTTTCTG | 58.895 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
299 | 327 | 5.115480 | GTTTGTTTTTCATCCCTTTCTGCA | 58.885 | 37.500 | 0.00 | 0.00 | 0.00 | 4.41 |
300 | 328 | 4.589216 | TGTTTTTCATCCCTTTCTGCAG | 57.411 | 40.909 | 7.63 | 7.63 | 0.00 | 4.41 |
301 | 329 | 4.214310 | TGTTTTTCATCCCTTTCTGCAGA | 58.786 | 39.130 | 13.74 | 13.74 | 0.00 | 4.26 |
302 | 330 | 4.834496 | TGTTTTTCATCCCTTTCTGCAGAT | 59.166 | 37.500 | 19.04 | 0.00 | 0.00 | 2.90 |
303 | 331 | 5.305128 | TGTTTTTCATCCCTTTCTGCAGATT | 59.695 | 36.000 | 19.04 | 0.00 | 0.00 | 2.40 |
304 | 332 | 6.183360 | TGTTTTTCATCCCTTTCTGCAGATTT | 60.183 | 34.615 | 19.04 | 0.00 | 0.00 | 2.17 |
305 | 333 | 6.423776 | TTTTCATCCCTTTCTGCAGATTTT | 57.576 | 33.333 | 19.04 | 0.00 | 0.00 | 1.82 |
308 | 336 | 4.219070 | TCATCCCTTTCTGCAGATTTTGTG | 59.781 | 41.667 | 19.04 | 12.37 | 0.00 | 3.33 |
310 | 338 | 3.960102 | TCCCTTTCTGCAGATTTTGTGTT | 59.040 | 39.130 | 19.04 | 0.00 | 0.00 | 3.32 |
311 | 339 | 4.405358 | TCCCTTTCTGCAGATTTTGTGTTT | 59.595 | 37.500 | 19.04 | 0.00 | 0.00 | 2.83 |
312 | 340 | 4.508861 | CCCTTTCTGCAGATTTTGTGTTTG | 59.491 | 41.667 | 19.04 | 0.00 | 0.00 | 2.93 |
313 | 341 | 4.508861 | CCTTTCTGCAGATTTTGTGTTTGG | 59.491 | 41.667 | 19.04 | 4.25 | 0.00 | 3.28 |
314 | 342 | 4.734398 | TTCTGCAGATTTTGTGTTTGGT | 57.266 | 36.364 | 19.04 | 0.00 | 0.00 | 3.67 |
315 | 343 | 4.734398 | TCTGCAGATTTTGTGTTTGGTT | 57.266 | 36.364 | 13.74 | 0.00 | 0.00 | 3.67 |
316 | 344 | 5.083533 | TCTGCAGATTTTGTGTTTGGTTT | 57.916 | 34.783 | 13.74 | 0.00 | 0.00 | 3.27 |
317 | 345 | 5.486526 | TCTGCAGATTTTGTGTTTGGTTTT | 58.513 | 33.333 | 13.74 | 0.00 | 0.00 | 2.43 |
318 | 346 | 5.580297 | TCTGCAGATTTTGTGTTTGGTTTTC | 59.420 | 36.000 | 13.74 | 0.00 | 0.00 | 2.29 |
319 | 347 | 5.240891 | TGCAGATTTTGTGTTTGGTTTTCA | 58.759 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
320 | 348 | 5.702670 | TGCAGATTTTGTGTTTGGTTTTCAA | 59.297 | 32.000 | 0.00 | 0.00 | 0.00 | 2.69 |
321 | 349 | 6.205464 | TGCAGATTTTGTGTTTGGTTTTCAAA | 59.795 | 30.769 | 0.00 | 0.00 | 42.50 | 2.69 |
322 | 350 | 7.080724 | GCAGATTTTGTGTTTGGTTTTCAAAA | 58.919 | 30.769 | 0.00 | 0.00 | 45.74 | 2.44 |
323 | 351 | 7.592903 | GCAGATTTTGTGTTTGGTTTTCAAAAA | 59.407 | 29.630 | 0.00 | 0.00 | 45.74 | 1.94 |
324 | 352 | 9.623350 | CAGATTTTGTGTTTGGTTTTCAAAAAT | 57.377 | 25.926 | 0.00 | 0.00 | 45.74 | 1.82 |
357 | 385 | 6.808008 | AGTTAATGGTCAGTTGACAATCTG | 57.192 | 37.500 | 13.73 | 9.98 | 46.47 | 2.90 |
358 | 386 | 6.533730 | AGTTAATGGTCAGTTGACAATCTGA | 58.466 | 36.000 | 13.73 | 13.22 | 46.47 | 3.27 |
359 | 387 | 6.998074 | AGTTAATGGTCAGTTGACAATCTGAA | 59.002 | 34.615 | 16.81 | 7.75 | 46.47 | 3.02 |
360 | 388 | 5.954296 | AATGGTCAGTTGACAATCTGAAG | 57.046 | 39.130 | 16.81 | 0.00 | 46.47 | 3.02 |
361 | 389 | 3.743521 | TGGTCAGTTGACAATCTGAAGG | 58.256 | 45.455 | 16.81 | 0.00 | 46.47 | 3.46 |
362 | 390 | 3.136443 | TGGTCAGTTGACAATCTGAAGGT | 59.864 | 43.478 | 16.81 | 0.00 | 46.47 | 3.50 |
363 | 391 | 4.137543 | GGTCAGTTGACAATCTGAAGGTT | 58.862 | 43.478 | 16.81 | 0.00 | 46.47 | 3.50 |
364 | 392 | 4.023707 | GGTCAGTTGACAATCTGAAGGTTG | 60.024 | 45.833 | 16.81 | 1.70 | 46.47 | 3.77 |
365 | 393 | 3.565482 | TCAGTTGACAATCTGAAGGTTGC | 59.435 | 43.478 | 14.28 | 0.00 | 37.69 | 4.17 |
366 | 394 | 3.567164 | CAGTTGACAATCTGAAGGTTGCT | 59.433 | 43.478 | 3.18 | 0.00 | 34.02 | 3.91 |
367 | 395 | 4.756642 | CAGTTGACAATCTGAAGGTTGCTA | 59.243 | 41.667 | 3.18 | 0.00 | 34.02 | 3.49 |
368 | 396 | 4.757149 | AGTTGACAATCTGAAGGTTGCTAC | 59.243 | 41.667 | 3.18 | 4.37 | 0.00 | 3.58 |
369 | 397 | 4.350368 | TGACAATCTGAAGGTTGCTACA | 57.650 | 40.909 | 3.18 | 0.00 | 0.00 | 2.74 |
370 | 398 | 4.713553 | TGACAATCTGAAGGTTGCTACAA | 58.286 | 39.130 | 3.18 | 0.00 | 0.00 | 2.41 |
371 | 399 | 4.756642 | TGACAATCTGAAGGTTGCTACAAG | 59.243 | 41.667 | 3.18 | 0.00 | 0.00 | 3.16 |
372 | 400 | 4.973168 | ACAATCTGAAGGTTGCTACAAGA | 58.027 | 39.130 | 3.18 | 0.00 | 0.00 | 3.02 |
373 | 401 | 5.564550 | ACAATCTGAAGGTTGCTACAAGAT | 58.435 | 37.500 | 3.18 | 0.69 | 0.00 | 2.40 |
374 | 402 | 5.413833 | ACAATCTGAAGGTTGCTACAAGATG | 59.586 | 40.000 | 3.18 | 2.22 | 0.00 | 2.90 |
375 | 403 | 3.338249 | TCTGAAGGTTGCTACAAGATGC | 58.662 | 45.455 | 0.00 | 0.00 | 0.00 | 3.91 |
376 | 404 | 2.421424 | CTGAAGGTTGCTACAAGATGCC | 59.579 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
377 | 405 | 1.398390 | GAAGGTTGCTACAAGATGCCG | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 5.69 |
378 | 406 | 0.324943 | AGGTTGCTACAAGATGCCGT | 59.675 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
379 | 407 | 0.727398 | GGTTGCTACAAGATGCCGTC | 59.273 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
380 | 408 | 1.438651 | GTTGCTACAAGATGCCGTCA | 58.561 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
381 | 409 | 1.394917 | GTTGCTACAAGATGCCGTCAG | 59.605 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
382 | 410 | 0.608130 | TGCTACAAGATGCCGTCAGT | 59.392 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
383 | 411 | 1.822371 | TGCTACAAGATGCCGTCAGTA | 59.178 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
384 | 412 | 2.159240 | TGCTACAAGATGCCGTCAGTAG | 60.159 | 50.000 | 10.49 | 10.49 | 39.11 | 2.57 |
385 | 413 | 2.799917 | GCTACAAGATGCCGTCAGTAGG | 60.800 | 54.545 | 14.48 | 2.43 | 37.79 | 3.18 |
386 | 414 | 0.537188 | ACAAGATGCCGTCAGTAGGG | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
387 | 415 | 0.824109 | CAAGATGCCGTCAGTAGGGA | 59.176 | 55.000 | 0.00 | 0.00 | 31.98 | 4.20 |
388 | 416 | 1.207089 | CAAGATGCCGTCAGTAGGGAA | 59.793 | 52.381 | 0.00 | 0.00 | 31.98 | 3.97 |
389 | 417 | 1.115467 | AGATGCCGTCAGTAGGGAAG | 58.885 | 55.000 | 0.00 | 0.00 | 31.98 | 3.46 |
390 | 418 | 0.530870 | GATGCCGTCAGTAGGGAAGC | 60.531 | 60.000 | 0.00 | 0.00 | 31.98 | 3.86 |
391 | 419 | 2.202756 | GCCGTCAGTAGGGAAGCG | 60.203 | 66.667 | 0.00 | 0.00 | 31.98 | 4.68 |
392 | 420 | 2.707849 | GCCGTCAGTAGGGAAGCGA | 61.708 | 63.158 | 0.00 | 0.00 | 31.98 | 4.93 |
393 | 421 | 1.433879 | CCGTCAGTAGGGAAGCGAG | 59.566 | 63.158 | 0.00 | 0.00 | 31.98 | 5.03 |
394 | 422 | 1.226717 | CGTCAGTAGGGAAGCGAGC | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 5.03 |
395 | 423 | 1.890894 | GTCAGTAGGGAAGCGAGCA | 59.109 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
396 | 424 | 0.246635 | GTCAGTAGGGAAGCGAGCAA | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
397 | 425 | 0.532573 | TCAGTAGGGAAGCGAGCAAG | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
398 | 426 | 1.086634 | CAGTAGGGAAGCGAGCAAGC | 61.087 | 60.000 | 0.00 | 0.00 | 37.41 | 4.01 |
402 | 430 | 2.359230 | GGAAGCGAGCAAGCCTGT | 60.359 | 61.111 | 0.00 | 0.00 | 38.01 | 4.00 |
415 | 443 | 1.080298 | GCCTGTTGTTGCATCTGGC | 60.080 | 57.895 | 10.70 | 10.70 | 39.58 | 4.85 |
427 | 455 | 3.971453 | ATCTGGCACGACGCACGAG | 62.971 | 63.158 | 9.43 | 2.98 | 45.17 | 4.18 |
430 | 458 | 3.764049 | GGCACGACGCACGAGTTC | 61.764 | 66.667 | 9.43 | 0.00 | 45.17 | 3.01 |
464 | 492 | 1.694696 | CCCCCTCTAGATACAGTTGGC | 59.305 | 57.143 | 0.00 | 0.00 | 0.00 | 4.52 |
466 | 494 | 3.438078 | CCCCCTCTAGATACAGTTGGCTA | 60.438 | 52.174 | 0.00 | 0.00 | 0.00 | 3.93 |
487 | 515 | 3.262420 | ACCAGTGCTAGTGAAATAAGCG | 58.738 | 45.455 | 0.00 | 0.00 | 39.14 | 4.68 |
497 | 525 | 7.710907 | TGCTAGTGAAATAAGCGTCTGAATTAT | 59.289 | 33.333 | 0.00 | 0.00 | 39.14 | 1.28 |
502 | 530 | 8.282592 | GTGAAATAAGCGTCTGAATTATATGCA | 58.717 | 33.333 | 0.00 | 0.00 | 0.00 | 3.96 |
503 | 531 | 9.002600 | TGAAATAAGCGTCTGAATTATATGCAT | 57.997 | 29.630 | 3.79 | 3.79 | 0.00 | 3.96 |
535 | 563 | 5.738619 | TGATTTAGGTACAGAAGCTCACA | 57.261 | 39.130 | 0.00 | 0.00 | 37.13 | 3.58 |
536 | 564 | 5.724328 | TGATTTAGGTACAGAAGCTCACAG | 58.276 | 41.667 | 0.00 | 0.00 | 37.13 | 3.66 |
543 | 571 | 1.625315 | ACAGAAGCTCACAGCCACATA | 59.375 | 47.619 | 0.00 | 0.00 | 43.77 | 2.29 |
544 | 572 | 2.038952 | ACAGAAGCTCACAGCCACATAA | 59.961 | 45.455 | 0.00 | 0.00 | 43.77 | 1.90 |
545 | 573 | 3.276857 | CAGAAGCTCACAGCCACATAAT | 58.723 | 45.455 | 0.00 | 0.00 | 43.77 | 1.28 |
546 | 574 | 3.693085 | CAGAAGCTCACAGCCACATAATT | 59.307 | 43.478 | 0.00 | 0.00 | 43.77 | 1.40 |
617 | 645 | 5.690865 | TGTAGACTTTTGAAGGTTCCATGT | 58.309 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
618 | 646 | 5.530915 | TGTAGACTTTTGAAGGTTCCATGTG | 59.469 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
661 | 693 | 2.414994 | AGACATGGACTGGCTGATTG | 57.585 | 50.000 | 0.00 | 0.00 | 43.63 | 2.67 |
663 | 695 | 0.994247 | ACATGGACTGGCTGATTGGA | 59.006 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
666 | 698 | 1.817099 | GGACTGGCTGATTGGAGCG | 60.817 | 63.158 | 0.00 | 0.00 | 40.13 | 5.03 |
669 | 701 | 0.957395 | ACTGGCTGATTGGAGCGTTG | 60.957 | 55.000 | 0.00 | 0.00 | 40.13 | 4.10 |
675 | 707 | 2.154462 | CTGATTGGAGCGTTGGACTTT | 58.846 | 47.619 | 0.00 | 0.00 | 0.00 | 2.66 |
680 | 712 | 1.202710 | TGGAGCGTTGGACTTTAGCAA | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
681 | 713 | 2.084546 | GGAGCGTTGGACTTTAGCAAT | 58.915 | 47.619 | 0.00 | 0.00 | 0.00 | 3.56 |
769 | 801 | 2.161855 | CAGCCATGACTTTACCTGCAA | 58.838 | 47.619 | 0.00 | 0.00 | 0.00 | 4.08 |
773 | 805 | 3.428045 | GCCATGACTTTACCTGCAATCAC | 60.428 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
774 | 806 | 3.758023 | CCATGACTTTACCTGCAATCACA | 59.242 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
775 | 807 | 4.379813 | CCATGACTTTACCTGCAATCACAC | 60.380 | 45.833 | 0.00 | 0.00 | 0.00 | 3.82 |
776 | 808 | 3.146066 | TGACTTTACCTGCAATCACACC | 58.854 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
777 | 809 | 2.488153 | GACTTTACCTGCAATCACACCC | 59.512 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
778 | 810 | 1.818674 | CTTTACCTGCAATCACACCCC | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 4.95 |
779 | 811 | 1.072266 | TTACCTGCAATCACACCCCT | 58.928 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
854 | 886 | 7.410174 | AGGTTTGATATTTTCCTCACATGGTA | 58.590 | 34.615 | 0.00 | 0.00 | 0.00 | 3.25 |
896 | 928 | 0.763035 | GAACATATACCCCGCCCAGT | 59.237 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
899 | 931 | 0.034896 | CATATACCCCGCCCAGTGAC | 59.965 | 60.000 | 0.00 | 0.00 | 0.00 | 3.67 |
907 | 939 | 2.280797 | GCCCAGTGACTGCGACAA | 60.281 | 61.111 | 7.16 | 0.00 | 0.00 | 3.18 |
909 | 941 | 2.310233 | CCCAGTGACTGCGACAACG | 61.310 | 63.158 | 7.16 | 0.00 | 42.93 | 4.10 |
925 | 957 | 6.274001 | CGACAACGCTGAAATATATTCACT | 57.726 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
931 | 963 | 8.798153 | CAACGCTGAAATATATTCACTTTTTCC | 58.202 | 33.333 | 0.00 | 0.00 | 0.00 | 3.13 |
933 | 965 | 7.122055 | ACGCTGAAATATATTCACTTTTTCCCA | 59.878 | 33.333 | 0.00 | 0.00 | 0.00 | 4.37 |
991 | 1035 | 3.765511 | AGGCAATGCATACAACATTCTGT | 59.234 | 39.130 | 7.79 | 0.00 | 35.58 | 3.41 |
1086 | 1130 | 1.338200 | CCGGAAGCAGAAGCACTACTT | 60.338 | 52.381 | 0.00 | 0.00 | 45.49 | 2.24 |
1162 | 1209 | 4.318332 | CAACTCTACATGCTCTTGGTTCA | 58.682 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
1215 | 1262 | 2.346803 | GAGCTCCAACTTCATAACGCA | 58.653 | 47.619 | 0.87 | 0.00 | 0.00 | 5.24 |
1405 | 1452 | 5.420409 | CCTACCAACTTAGTAAGCTTCCAG | 58.580 | 45.833 | 0.00 | 0.00 | 0.00 | 3.86 |
1636 | 1683 | 3.875369 | GCCTGAGATGGTTCCAAGATTGT | 60.875 | 47.826 | 0.00 | 0.00 | 0.00 | 2.71 |
1677 | 1724 | 3.922171 | AGTGGATTCTCTGGTTCCATC | 57.078 | 47.619 | 0.00 | 0.00 | 41.37 | 3.51 |
1773 | 1820 | 2.918712 | AGGAGCTTGGGATGATAACG | 57.081 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1785 | 1832 | 5.546110 | TGGGATGATAACGGGATTGAGAATA | 59.454 | 40.000 | 0.00 | 0.00 | 0.00 | 1.75 |
1791 | 1838 | 6.700081 | TGATAACGGGATTGAGAATACTTTCG | 59.300 | 38.462 | 0.00 | 0.00 | 36.93 | 3.46 |
1882 | 1929 | 6.922957 | GCTTAACATTGGAAACACTGATTTGA | 59.077 | 34.615 | 0.00 | 0.00 | 43.19 | 2.69 |
1889 | 1936 | 9.350357 | CATTGGAAACACTGATTTGATTTCTAG | 57.650 | 33.333 | 0.00 | 0.00 | 43.19 | 2.43 |
2318 | 2654 | 3.087031 | ACATCAGCTTCAACCATCTTGG | 58.913 | 45.455 | 0.00 | 0.00 | 45.02 | 3.61 |
2329 | 2665 | 1.526887 | CATCTTGGGGGCGAGCTTA | 59.473 | 57.895 | 0.00 | 0.00 | 0.00 | 3.09 |
2341 | 2677 | 1.485838 | CGAGCTTACTGCAGCCATCG | 61.486 | 60.000 | 15.27 | 12.80 | 45.94 | 3.84 |
2364 | 2700 | 4.439776 | GCGTTGTTGGTAAATCTTGTTGTC | 59.560 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2444 | 2792 | 1.168714 | GCAGTTCTTAAGGTGGCTGG | 58.831 | 55.000 | 1.85 | 0.00 | 0.00 | 4.85 |
2461 | 2827 | 2.943199 | GCTGGGAATAGCAGCTTCTTGT | 60.943 | 50.000 | 0.00 | 0.00 | 43.17 | 3.16 |
2783 | 3152 | 2.421388 | CGTGGATAGGGGAAAGCAATCA | 60.421 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2909 | 4364 | 1.784358 | TTCGTAGGGACCATACCAGG | 58.216 | 55.000 | 10.62 | 0.00 | 0.00 | 4.45 |
3382 | 8976 | 6.372937 | TGATCCGTCAATTTATAGCAACAACA | 59.627 | 34.615 | 0.00 | 0.00 | 0.00 | 3.33 |
3433 | 9045 | 9.173021 | ACATTTCATGTAAAAATGACTCGGATA | 57.827 | 29.630 | 19.64 | 0.00 | 43.60 | 2.59 |
3440 | 9052 | 5.388599 | AAAAATGACTCGGATAGGGGAAT | 57.611 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
3498 | 9110 | 1.800805 | ACTCAGTGATTGCTGGAACG | 58.199 | 50.000 | 0.00 | 0.00 | 37.12 | 3.95 |
3573 | 9185 | 4.553323 | GATGTGCTTTCTTGAGTTGCATT | 58.447 | 39.130 | 0.00 | 0.00 | 36.04 | 3.56 |
3679 | 9291 | 9.301153 | AGTTGACTTGACATATTTTGTTTCAAC | 57.699 | 29.630 | 0.00 | 0.00 | 40.28 | 3.18 |
3687 | 9299 | 7.433719 | TGACATATTTTGTTTCAACGTTCAAGG | 59.566 | 33.333 | 0.00 | 0.00 | 39.18 | 3.61 |
3719 | 9331 | 4.878439 | CATGTATTGGCATGGGATTTCTG | 58.122 | 43.478 | 0.00 | 0.00 | 41.70 | 3.02 |
3726 | 9338 | 2.694628 | GGCATGGGATTTCTGTTATGCA | 59.305 | 45.455 | 0.00 | 0.00 | 41.84 | 3.96 |
3727 | 9339 | 3.243636 | GGCATGGGATTTCTGTTATGCAG | 60.244 | 47.826 | 0.00 | 0.00 | 46.34 | 4.41 |
3767 | 9380 | 7.907214 | AGTTTGTTATACAGCTTTAGTCAGG | 57.093 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
3773 | 9386 | 3.697619 | ACAGCTTTAGTCAGGGGTAAC | 57.302 | 47.619 | 0.00 | 0.00 | 0.00 | 2.50 |
3797 | 9410 | 4.261741 | GGTGCATGTCTCACTCATGTTTTT | 60.262 | 41.667 | 0.00 | 0.00 | 42.94 | 1.94 |
3824 | 9437 | 7.849804 | AAGCGTCTGTTGTAATAAATCTCAT | 57.150 | 32.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3875 | 9488 | 3.084039 | CAGTGGTAATGGTGCATGTCTT | 58.916 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
3904 | 9517 | 6.164408 | TGTTTTCATATGCGTCTGTTGTAG | 57.836 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
3973 | 10044 | 5.634859 | GCTGTAAGTTGCTAAAAATGTGCAT | 59.365 | 36.000 | 0.00 | 0.00 | 36.55 | 3.96 |
3992 | 10063 | 4.858140 | TGCATCATTTTTGTTAGCATCGTG | 59.142 | 37.500 | 0.00 | 0.00 | 0.00 | 4.35 |
3996 | 10067 | 7.220683 | GCATCATTTTTGTTAGCATCGTGTTAT | 59.779 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
4012 | 10083 | 7.079182 | TCGTGTTATGGTTATTTGTGGATTC | 57.921 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4021 | 10092 | 3.575965 | ATTTGTGGATTCGGAAAGTGC | 57.424 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
4062 | 10133 | 6.697019 | GCAACAGTGTTGTTTTCATTCACTAT | 59.303 | 34.615 | 31.12 | 0.00 | 45.01 | 2.12 |
4063 | 10134 | 7.306167 | GCAACAGTGTTGTTTTCATTCACTATG | 60.306 | 37.037 | 31.12 | 6.57 | 45.01 | 2.23 |
4064 | 10135 | 7.566760 | ACAGTGTTGTTTTCATTCACTATGA | 57.433 | 32.000 | 0.00 | 0.00 | 40.44 | 2.15 |
4065 | 10136 | 7.642669 | ACAGTGTTGTTTTCATTCACTATGAG | 58.357 | 34.615 | 0.00 | 0.00 | 38.23 | 2.90 |
4085 | 10156 | 2.560105 | AGGAGTCAAAAGAATGCAAGGC | 59.440 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
4101 | 10172 | 4.141937 | TGCAAGGCTAAGGTGAGTACTATG | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 2.23 |
4180 | 10251 | 0.901124 | GCCTCACTGACTGGAGATGT | 59.099 | 55.000 | 0.00 | 0.00 | 32.87 | 3.06 |
4224 | 10295 | 2.040544 | CCGCTGTTGTCATCACCCC | 61.041 | 63.158 | 0.00 | 0.00 | 0.00 | 4.95 |
4227 | 10298 | 0.539438 | GCTGTTGTCATCACCCCCAA | 60.539 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
4230 | 10301 | 1.303236 | TTGTCATCACCCCCAAGCG | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 4.68 |
4231 | 10302 | 2.063015 | TTGTCATCACCCCCAAGCGT | 62.063 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
4258 | 10329 | 1.212935 | GGTAGACACCATGAGGCCATT | 59.787 | 52.381 | 5.01 | 0.00 | 45.04 | 3.16 |
4304 | 10375 | 8.080417 | CACAATCCCATGCTTATAGATGAAAAG | 58.920 | 37.037 | 0.00 | 0.00 | 0.00 | 2.27 |
4321 | 10392 | 5.819991 | TGAAAAGTCCAGAAGGCAGATTAT | 58.180 | 37.500 | 0.00 | 0.00 | 33.74 | 1.28 |
4322 | 10393 | 6.248433 | TGAAAAGTCCAGAAGGCAGATTATT | 58.752 | 36.000 | 0.00 | 0.00 | 33.74 | 1.40 |
4335 | 10406 | 9.727627 | GAAGGCAGATTATTTTCATACAGAAAG | 57.272 | 33.333 | 0.00 | 0.00 | 46.24 | 2.62 |
4348 | 10419 | 8.574251 | TTCATACAGAAAGGCTAAGCAAAATA | 57.426 | 30.769 | 0.00 | 0.00 | 32.05 | 1.40 |
4352 | 10423 | 6.624423 | ACAGAAAGGCTAAGCAAAATACATG | 58.376 | 36.000 | 0.00 | 0.00 | 0.00 | 3.21 |
4359 | 10430 | 8.940397 | AGGCTAAGCAAAATACATGGTAATAT | 57.060 | 30.769 | 0.00 | 0.00 | 0.00 | 1.28 |
4360 | 10431 | 9.367160 | AGGCTAAGCAAAATACATGGTAATATT | 57.633 | 29.630 | 0.00 | 0.00 | 0.00 | 1.28 |
4361 | 10432 | 9.981114 | GGCTAAGCAAAATACATGGTAATATTT | 57.019 | 29.630 | 0.00 | 0.00 | 33.40 | 1.40 |
4403 | 10476 | 2.919228 | ACATCGGCCTTAAATCTCCAC | 58.081 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
4404 | 10477 | 2.222027 | CATCGGCCTTAAATCTCCACC | 58.778 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
4406 | 10479 | 0.254747 | CGGCCTTAAATCTCCACCCA | 59.745 | 55.000 | 0.00 | 0.00 | 0.00 | 4.51 |
4407 | 10480 | 1.133792 | CGGCCTTAAATCTCCACCCAT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
4408 | 10481 | 2.310538 | GGCCTTAAATCTCCACCCATG | 58.689 | 52.381 | 0.00 | 0.00 | 0.00 | 3.66 |
4427 | 10508 | 2.653726 | TGGTCTGTTGTTCATGCAAGT | 58.346 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
4477 | 10578 | 6.349197 | CCCATATTATGTGACGCAATATGCAA | 60.349 | 38.462 | 17.02 | 0.00 | 45.36 | 4.08 |
4480 | 10581 | 9.131416 | CATATTATGTGACGCAATATGCAAATT | 57.869 | 29.630 | 12.85 | 0.00 | 45.36 | 1.82 |
4488 | 10589 | 4.805192 | ACGCAATATGCAAATTCATGGTTC | 59.195 | 37.500 | 2.99 | 0.00 | 45.36 | 3.62 |
4502 | 10603 | 8.837099 | AATTCATGGTTCCTAATTACATCCAA | 57.163 | 30.769 | 0.00 | 0.00 | 0.00 | 3.53 |
4529 | 10630 | 1.338337 | ACGGGATACTCAAGCATCGAG | 59.662 | 52.381 | 0.00 | 0.00 | 36.53 | 4.04 |
4531 | 10632 | 2.605823 | CGGGATACTCAAGCATCGAGTC | 60.606 | 54.545 | 6.03 | 0.00 | 42.69 | 3.36 |
4533 | 10634 | 3.006323 | GGGATACTCAAGCATCGAGTCAT | 59.994 | 47.826 | 6.03 | 0.81 | 42.69 | 3.06 |
4539 | 10640 | 5.482908 | ACTCAAGCATCGAGTCATTAACTT | 58.517 | 37.500 | 0.00 | 0.00 | 39.56 | 2.66 |
4544 | 10645 | 4.872691 | AGCATCGAGTCATTAACTTCTTGG | 59.127 | 41.667 | 0.00 | 0.00 | 38.74 | 3.61 |
4565 | 10666 | 3.118542 | GGGCAAACTATAGTACCGAACG | 58.881 | 50.000 | 5.65 | 0.00 | 0.00 | 3.95 |
4601 | 10702 | 4.026744 | CAGTTCTCAGGTCTCCATTCCTA | 58.973 | 47.826 | 0.00 | 0.00 | 32.26 | 2.94 |
4628 | 10729 | 4.969484 | ACCTAAGTGAAAAGGTCGTCAAT | 58.031 | 39.130 | 0.00 | 0.00 | 42.60 | 2.57 |
4637 | 10738 | 3.915437 | AAGGTCGTCAATCGCAAAAAT | 57.085 | 38.095 | 0.00 | 0.00 | 39.67 | 1.82 |
4643 | 10744 | 4.841841 | GTCGTCAATCGCAAAAATCGTTTA | 59.158 | 37.500 | 0.00 | 0.00 | 39.67 | 2.01 |
4644 | 10745 | 5.506832 | GTCGTCAATCGCAAAAATCGTTTAT | 59.493 | 36.000 | 0.00 | 0.00 | 39.67 | 1.40 |
4645 | 10746 | 5.506485 | TCGTCAATCGCAAAAATCGTTTATG | 59.494 | 36.000 | 0.00 | 0.00 | 39.67 | 1.90 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.374058 | AGCCTGATCCAAATTACGTTTCG | 59.626 | 43.478 | 0.00 | 0.00 | 0.00 | 3.46 |
1 | 2 | 4.965119 | AGCCTGATCCAAATTACGTTTC | 57.035 | 40.909 | 0.00 | 0.00 | 0.00 | 2.78 |
3 | 4 | 4.764823 | TCAAAGCCTGATCCAAATTACGTT | 59.235 | 37.500 | 0.00 | 0.00 | 0.00 | 3.99 |
5 | 6 | 4.963276 | TCAAAGCCTGATCCAAATTACG | 57.037 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
6 | 7 | 7.067981 | AGAGAATCAAAGCCTGATCCAAATTAC | 59.932 | 37.037 | 0.00 | 0.00 | 44.43 | 1.89 |
7 | 8 | 7.067859 | CAGAGAATCAAAGCCTGATCCAAATTA | 59.932 | 37.037 | 0.00 | 0.00 | 44.43 | 1.40 |
8 | 9 | 5.956563 | AGAGAATCAAAGCCTGATCCAAATT | 59.043 | 36.000 | 0.00 | 0.00 | 44.43 | 1.82 |
9 | 10 | 5.360144 | CAGAGAATCAAAGCCTGATCCAAAT | 59.640 | 40.000 | 0.00 | 0.00 | 44.43 | 2.32 |
10 | 11 | 4.703575 | CAGAGAATCAAAGCCTGATCCAAA | 59.296 | 41.667 | 0.00 | 0.00 | 44.43 | 3.28 |
14 | 15 | 6.696441 | ATTTCAGAGAATCAAAGCCTGATC | 57.304 | 37.500 | 0.00 | 0.00 | 44.43 | 2.92 |
16 | 17 | 7.066645 | CACATATTTCAGAGAATCAAAGCCTGA | 59.933 | 37.037 | 0.00 | 0.00 | 37.82 | 3.86 |
42 | 43 | 9.162764 | ACCATGAAACATACATAACTGTAACTC | 57.837 | 33.333 | 0.00 | 0.00 | 41.09 | 3.01 |
96 | 99 | 5.766222 | ACCGACTATACAAATACGCCTAAG | 58.234 | 41.667 | 0.00 | 0.00 | 0.00 | 2.18 |
102 | 105 | 5.342525 | GCTCATGACCGACTATACAAATACG | 59.657 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
105 | 108 | 5.069119 | TGAGCTCATGACCGACTATACAAAT | 59.931 | 40.000 | 13.74 | 0.00 | 0.00 | 2.32 |
119 | 122 | 1.911357 | AGGATGGTGTTGAGCTCATGA | 59.089 | 47.619 | 19.04 | 3.95 | 0.00 | 3.07 |
130 | 133 | 1.381872 | CCGGAGAGGAGGATGGTGT | 60.382 | 63.158 | 0.00 | 0.00 | 45.00 | 4.16 |
132 | 135 | 2.444895 | GCCGGAGAGGAGGATGGT | 60.445 | 66.667 | 5.05 | 0.00 | 45.00 | 3.55 |
140 | 143 | 4.154347 | GTCTGGCTGCCGGAGAGG | 62.154 | 72.222 | 29.84 | 7.72 | 39.90 | 3.69 |
146 | 149 | 3.958147 | AACGATGGTCTGGCTGCCG | 62.958 | 63.158 | 14.98 | 9.13 | 0.00 | 5.69 |
164 | 167 | 2.660572 | GTCACAGCCTCATAGGAGAGA | 58.339 | 52.381 | 5.84 | 0.00 | 44.26 | 3.10 |
172 | 175 | 0.694771 | ACATGTGGTCACAGCCTCAT | 59.305 | 50.000 | 9.72 | 0.00 | 45.48 | 2.90 |
201 | 204 | 3.834799 | GTCTCCGGCAGGGGTACG | 61.835 | 72.222 | 1.56 | 0.00 | 39.67 | 3.67 |
217 | 220 | 1.992277 | AGCTTGAGGGCGATGAGGT | 60.992 | 57.895 | 0.00 | 0.00 | 37.29 | 3.85 |
225 | 250 | 1.712977 | CTTGATCGCAGCTTGAGGGC | 61.713 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
243 | 271 | 2.668144 | CTCCTTAGGATCCTCCGACT | 57.332 | 55.000 | 20.22 | 0.00 | 42.75 | 4.18 |
256 | 284 | 2.590611 | ACACATCTACTCCCCCTCCTTA | 59.409 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
257 | 285 | 1.366435 | ACACATCTACTCCCCCTCCTT | 59.634 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
267 | 295 | 6.777580 | AGGGATGAAAAACAAACACATCTACT | 59.222 | 34.615 | 0.00 | 0.00 | 37.87 | 2.57 |
277 | 305 | 5.128499 | TCTGCAGAAAGGGATGAAAAACAAA | 59.872 | 36.000 | 15.67 | 0.00 | 0.00 | 2.83 |
278 | 306 | 4.648762 | TCTGCAGAAAGGGATGAAAAACAA | 59.351 | 37.500 | 15.67 | 0.00 | 0.00 | 2.83 |
279 | 307 | 4.214310 | TCTGCAGAAAGGGATGAAAAACA | 58.786 | 39.130 | 15.67 | 0.00 | 0.00 | 2.83 |
280 | 308 | 4.853924 | TCTGCAGAAAGGGATGAAAAAC | 57.146 | 40.909 | 15.67 | 0.00 | 0.00 | 2.43 |
281 | 309 | 6.423776 | AAATCTGCAGAAAGGGATGAAAAA | 57.576 | 33.333 | 22.50 | 0.00 | 0.00 | 1.94 |
284 | 312 | 4.834496 | ACAAAATCTGCAGAAAGGGATGAA | 59.166 | 37.500 | 22.50 | 0.00 | 0.00 | 2.57 |
285 | 313 | 4.219070 | CACAAAATCTGCAGAAAGGGATGA | 59.781 | 41.667 | 22.50 | 0.00 | 0.00 | 2.92 |
287 | 315 | 4.154942 | ACACAAAATCTGCAGAAAGGGAT | 58.845 | 39.130 | 22.50 | 0.00 | 0.00 | 3.85 |
288 | 316 | 3.565307 | ACACAAAATCTGCAGAAAGGGA | 58.435 | 40.909 | 22.50 | 0.00 | 0.00 | 4.20 |
289 | 317 | 4.326504 | AACACAAAATCTGCAGAAAGGG | 57.673 | 40.909 | 22.50 | 13.99 | 0.00 | 3.95 |
290 | 318 | 4.508861 | CCAAACACAAAATCTGCAGAAAGG | 59.491 | 41.667 | 22.50 | 12.97 | 0.00 | 3.11 |
292 | 320 | 5.083533 | ACCAAACACAAAATCTGCAGAAA | 57.916 | 34.783 | 22.50 | 0.00 | 0.00 | 2.52 |
293 | 321 | 4.734398 | ACCAAACACAAAATCTGCAGAA | 57.266 | 36.364 | 22.50 | 4.23 | 0.00 | 3.02 |
295 | 323 | 5.350914 | TGAAAACCAAACACAAAATCTGCAG | 59.649 | 36.000 | 7.63 | 7.63 | 0.00 | 4.41 |
296 | 324 | 5.240891 | TGAAAACCAAACACAAAATCTGCA | 58.759 | 33.333 | 0.00 | 0.00 | 0.00 | 4.41 |
297 | 325 | 5.793026 | TGAAAACCAAACACAAAATCTGC | 57.207 | 34.783 | 0.00 | 0.00 | 0.00 | 4.26 |
331 | 359 | 8.950210 | CAGATTGTCAACTGACCATTAACTTAT | 58.050 | 33.333 | 7.37 | 0.00 | 44.15 | 1.73 |
332 | 360 | 8.154203 | TCAGATTGTCAACTGACCATTAACTTA | 58.846 | 33.333 | 7.37 | 0.00 | 44.15 | 2.24 |
333 | 361 | 6.998074 | TCAGATTGTCAACTGACCATTAACTT | 59.002 | 34.615 | 7.37 | 0.00 | 44.15 | 2.66 |
334 | 362 | 6.533730 | TCAGATTGTCAACTGACCATTAACT | 58.466 | 36.000 | 7.37 | 0.00 | 44.15 | 2.24 |
335 | 363 | 6.801539 | TCAGATTGTCAACTGACCATTAAC | 57.198 | 37.500 | 7.37 | 0.00 | 44.15 | 2.01 |
336 | 364 | 6.430925 | CCTTCAGATTGTCAACTGACCATTAA | 59.569 | 38.462 | 13.88 | 0.00 | 44.15 | 1.40 |
337 | 365 | 5.939883 | CCTTCAGATTGTCAACTGACCATTA | 59.060 | 40.000 | 13.88 | 3.46 | 44.15 | 1.90 |
338 | 366 | 4.763793 | CCTTCAGATTGTCAACTGACCATT | 59.236 | 41.667 | 13.88 | 0.00 | 44.15 | 3.16 |
339 | 367 | 4.202503 | ACCTTCAGATTGTCAACTGACCAT | 60.203 | 41.667 | 13.88 | 1.88 | 44.15 | 3.55 |
340 | 368 | 3.136443 | ACCTTCAGATTGTCAACTGACCA | 59.864 | 43.478 | 13.88 | 0.00 | 44.15 | 4.02 |
341 | 369 | 3.744660 | ACCTTCAGATTGTCAACTGACC | 58.255 | 45.455 | 13.88 | 0.00 | 44.15 | 4.02 |
342 | 370 | 4.555511 | GCAACCTTCAGATTGTCAACTGAC | 60.556 | 45.833 | 13.88 | 2.78 | 41.82 | 3.51 |
343 | 371 | 3.565482 | GCAACCTTCAGATTGTCAACTGA | 59.435 | 43.478 | 11.49 | 11.49 | 40.66 | 3.41 |
344 | 372 | 3.567164 | AGCAACCTTCAGATTGTCAACTG | 59.433 | 43.478 | 8.17 | 8.17 | 35.72 | 3.16 |
345 | 373 | 3.825328 | AGCAACCTTCAGATTGTCAACT | 58.175 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
346 | 374 | 4.515191 | TGTAGCAACCTTCAGATTGTCAAC | 59.485 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
347 | 375 | 4.713553 | TGTAGCAACCTTCAGATTGTCAA | 58.286 | 39.130 | 0.00 | 0.00 | 0.00 | 3.18 |
348 | 376 | 4.350368 | TGTAGCAACCTTCAGATTGTCA | 57.650 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
349 | 377 | 4.997395 | TCTTGTAGCAACCTTCAGATTGTC | 59.003 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
350 | 378 | 4.973168 | TCTTGTAGCAACCTTCAGATTGT | 58.027 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
351 | 379 | 5.675575 | GCATCTTGTAGCAACCTTCAGATTG | 60.676 | 44.000 | 0.00 | 0.00 | 0.00 | 2.67 |
352 | 380 | 4.397417 | GCATCTTGTAGCAACCTTCAGATT | 59.603 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
353 | 381 | 3.944015 | GCATCTTGTAGCAACCTTCAGAT | 59.056 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
354 | 382 | 3.338249 | GCATCTTGTAGCAACCTTCAGA | 58.662 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
355 | 383 | 2.421424 | GGCATCTTGTAGCAACCTTCAG | 59.579 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
356 | 384 | 2.436417 | GGCATCTTGTAGCAACCTTCA | 58.564 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
357 | 385 | 1.398390 | CGGCATCTTGTAGCAACCTTC | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
358 | 386 | 1.271379 | ACGGCATCTTGTAGCAACCTT | 60.271 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
359 | 387 | 0.324943 | ACGGCATCTTGTAGCAACCT | 59.675 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
360 | 388 | 0.727398 | GACGGCATCTTGTAGCAACC | 59.273 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
361 | 389 | 1.394917 | CTGACGGCATCTTGTAGCAAC | 59.605 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
362 | 390 | 1.001974 | ACTGACGGCATCTTGTAGCAA | 59.998 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
363 | 391 | 0.608130 | ACTGACGGCATCTTGTAGCA | 59.392 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
364 | 392 | 2.464865 | CTACTGACGGCATCTTGTAGC | 58.535 | 52.381 | 0.00 | 0.00 | 32.50 | 3.58 |
365 | 393 | 2.223829 | CCCTACTGACGGCATCTTGTAG | 60.224 | 54.545 | 8.14 | 8.14 | 36.10 | 2.74 |
366 | 394 | 1.754803 | CCCTACTGACGGCATCTTGTA | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 2.41 |
367 | 395 | 0.537188 | CCCTACTGACGGCATCTTGT | 59.463 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
368 | 396 | 0.824109 | TCCCTACTGACGGCATCTTG | 59.176 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
369 | 397 | 1.482593 | CTTCCCTACTGACGGCATCTT | 59.517 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
370 | 398 | 1.115467 | CTTCCCTACTGACGGCATCT | 58.885 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
371 | 399 | 0.530870 | GCTTCCCTACTGACGGCATC | 60.531 | 60.000 | 0.00 | 0.00 | 0.00 | 3.91 |
372 | 400 | 1.522569 | GCTTCCCTACTGACGGCAT | 59.477 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
373 | 401 | 2.978824 | GCTTCCCTACTGACGGCA | 59.021 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
374 | 402 | 2.202756 | CGCTTCCCTACTGACGGC | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
375 | 403 | 1.433879 | CTCGCTTCCCTACTGACGG | 59.566 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
376 | 404 | 1.226717 | GCTCGCTTCCCTACTGACG | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
377 | 405 | 0.246635 | TTGCTCGCTTCCCTACTGAC | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
378 | 406 | 0.532573 | CTTGCTCGCTTCCCTACTGA | 59.467 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
379 | 407 | 1.086634 | GCTTGCTCGCTTCCCTACTG | 61.087 | 60.000 | 0.00 | 0.00 | 0.00 | 2.74 |
380 | 408 | 1.219393 | GCTTGCTCGCTTCCCTACT | 59.781 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
381 | 409 | 1.815840 | GGCTTGCTCGCTTCCCTAC | 60.816 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
382 | 410 | 1.990060 | AGGCTTGCTCGCTTCCCTA | 60.990 | 57.895 | 0.00 | 0.00 | 0.00 | 3.53 |
383 | 411 | 3.325753 | AGGCTTGCTCGCTTCCCT | 61.326 | 61.111 | 0.00 | 0.00 | 0.00 | 4.20 |
384 | 412 | 3.130160 | CAGGCTTGCTCGCTTCCC | 61.130 | 66.667 | 0.00 | 0.00 | 0.00 | 3.97 |
385 | 413 | 1.968540 | AACAGGCTTGCTCGCTTCC | 60.969 | 57.895 | 0.00 | 0.00 | 0.00 | 3.46 |
386 | 414 | 1.208614 | CAACAGGCTTGCTCGCTTC | 59.791 | 57.895 | 0.00 | 0.00 | 0.00 | 3.86 |
387 | 415 | 1.103398 | AACAACAGGCTTGCTCGCTT | 61.103 | 50.000 | 0.00 | 0.00 | 0.00 | 4.68 |
388 | 416 | 1.526917 | AACAACAGGCTTGCTCGCT | 60.527 | 52.632 | 0.00 | 0.00 | 0.00 | 4.93 |
389 | 417 | 1.370900 | CAACAACAGGCTTGCTCGC | 60.371 | 57.895 | 0.00 | 0.00 | 0.00 | 5.03 |
390 | 418 | 1.370900 | GCAACAACAGGCTTGCTCG | 60.371 | 57.895 | 0.00 | 0.00 | 39.79 | 5.03 |
391 | 419 | 0.316204 | ATGCAACAACAGGCTTGCTC | 59.684 | 50.000 | 9.32 | 0.00 | 42.77 | 4.26 |
392 | 420 | 0.316204 | GATGCAACAACAGGCTTGCT | 59.684 | 50.000 | 9.32 | 0.00 | 42.77 | 3.91 |
393 | 421 | 0.316204 | AGATGCAACAACAGGCTTGC | 59.684 | 50.000 | 0.00 | 1.19 | 42.67 | 4.01 |
394 | 422 | 1.336517 | CCAGATGCAACAACAGGCTTG | 60.337 | 52.381 | 0.00 | 0.00 | 0.00 | 4.01 |
395 | 423 | 0.963962 | CCAGATGCAACAACAGGCTT | 59.036 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
396 | 424 | 1.530013 | GCCAGATGCAACAACAGGCT | 61.530 | 55.000 | 10.85 | 0.00 | 40.77 | 4.58 |
397 | 425 | 1.080298 | GCCAGATGCAACAACAGGC | 60.080 | 57.895 | 0.00 | 0.00 | 40.77 | 4.85 |
427 | 455 | 2.681344 | GGGGGATGACAAATACACGAAC | 59.319 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
430 | 458 | 2.170607 | AGAGGGGGATGACAAATACACG | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
433 | 461 | 6.497259 | TGTATCTAGAGGGGGATGACAAATAC | 59.503 | 42.308 | 0.00 | 0.00 | 0.00 | 1.89 |
440 | 468 | 4.483950 | CAACTGTATCTAGAGGGGGATGA | 58.516 | 47.826 | 0.00 | 0.00 | 0.00 | 2.92 |
464 | 492 | 4.504461 | CGCTTATTTCACTAGCACTGGTAG | 59.496 | 45.833 | 12.79 | 12.79 | 39.25 | 3.18 |
466 | 494 | 3.262420 | CGCTTATTTCACTAGCACTGGT | 58.738 | 45.455 | 0.00 | 0.00 | 34.62 | 4.00 |
535 | 563 | 4.081406 | TCAGTTCAAGCAATTATGTGGCT | 58.919 | 39.130 | 0.00 | 0.00 | 40.14 | 4.75 |
536 | 564 | 4.439305 | TCAGTTCAAGCAATTATGTGGC | 57.561 | 40.909 | 0.00 | 0.00 | 0.00 | 5.01 |
543 | 571 | 5.596836 | TCTTTGGTTCAGTTCAAGCAATT | 57.403 | 34.783 | 0.00 | 0.00 | 41.95 | 2.32 |
544 | 572 | 5.510179 | CCATCTTTGGTTCAGTTCAAGCAAT | 60.510 | 40.000 | 0.00 | 0.00 | 41.95 | 3.56 |
545 | 573 | 4.202141 | CCATCTTTGGTTCAGTTCAAGCAA | 60.202 | 41.667 | 0.00 | 0.00 | 40.98 | 3.91 |
546 | 574 | 3.318839 | CCATCTTTGGTTCAGTTCAAGCA | 59.681 | 43.478 | 0.00 | 0.00 | 38.30 | 3.91 |
587 | 615 | 7.391833 | GGAACCTTCAAAAGTCTACAATGAGAT | 59.608 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
589 | 617 | 6.486657 | TGGAACCTTCAAAAGTCTACAATGAG | 59.513 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
595 | 623 | 5.048713 | CCACATGGAACCTTCAAAAGTCTAC | 60.049 | 44.000 | 0.00 | 0.00 | 37.39 | 2.59 |
606 | 634 | 0.482446 | TCTTGCCCACATGGAACCTT | 59.518 | 50.000 | 0.00 | 0.00 | 37.39 | 3.50 |
617 | 645 | 1.642112 | TGAATGCCAATTCTTGCCCA | 58.358 | 45.000 | 0.63 | 0.00 | 42.40 | 5.36 |
618 | 646 | 2.766345 | TTGAATGCCAATTCTTGCCC | 57.234 | 45.000 | 0.63 | 0.00 | 42.40 | 5.36 |
661 | 693 | 1.519408 | TTGCTAAAGTCCAACGCTCC | 58.481 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
663 | 695 | 1.200020 | GCATTGCTAAAGTCCAACGCT | 59.800 | 47.619 | 0.16 | 0.00 | 28.60 | 5.07 |
666 | 698 | 2.229784 | AGCTGCATTGCTAAAGTCCAAC | 59.770 | 45.455 | 10.49 | 0.00 | 42.10 | 3.77 |
669 | 701 | 1.133790 | CCAGCTGCATTGCTAAAGTCC | 59.866 | 52.381 | 8.66 | 0.00 | 41.98 | 3.85 |
675 | 707 | 1.597797 | GCCAACCAGCTGCATTGCTA | 61.598 | 55.000 | 18.72 | 0.00 | 41.98 | 3.49 |
680 | 712 | 1.117142 | ACAAAGCCAACCAGCTGCAT | 61.117 | 50.000 | 8.66 | 0.00 | 44.11 | 3.96 |
681 | 713 | 1.757731 | ACAAAGCCAACCAGCTGCA | 60.758 | 52.632 | 8.66 | 0.00 | 44.11 | 4.41 |
733 | 765 | 1.471327 | GGCTGATGACTGAGACTGCTC | 60.471 | 57.143 | 0.00 | 0.00 | 41.67 | 4.26 |
751 | 783 | 2.754552 | TGATTGCAGGTAAAGTCATGGC | 59.245 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
777 | 809 | 0.106519 | CCAATTCCTAGCCCCACAGG | 60.107 | 60.000 | 0.00 | 0.00 | 39.47 | 4.00 |
778 | 810 | 0.106519 | CCCAATTCCTAGCCCCACAG | 60.107 | 60.000 | 0.00 | 0.00 | 0.00 | 3.66 |
779 | 811 | 0.551377 | TCCCAATTCCTAGCCCCACA | 60.551 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
854 | 886 | 8.314021 | GTTCATAAAGAAATCAGATTTGGGGTT | 58.686 | 33.333 | 13.38 | 4.59 | 38.13 | 4.11 |
869 | 901 | 5.310451 | GGCGGGGTATATGTTCATAAAGAA | 58.690 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
907 | 939 | 7.122055 | TGGGAAAAAGTGAATATATTTCAGCGT | 59.878 | 33.333 | 0.00 | 0.00 | 32.91 | 5.07 |
925 | 957 | 9.548631 | TGGACCAAAGTTATTATATGGGAAAAA | 57.451 | 29.630 | 0.00 | 0.00 | 35.44 | 1.94 |
931 | 963 | 7.014134 | TGCACATGGACCAAAGTTATTATATGG | 59.986 | 37.037 | 0.00 | 0.00 | 37.19 | 2.74 |
933 | 965 | 7.255590 | GCTGCACATGGACCAAAGTTATTATAT | 60.256 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
941 | 973 | 0.178981 | AGCTGCACATGGACCAAAGT | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
947 | 986 | 2.393271 | AGAAGTAGCTGCACATGGAC | 57.607 | 50.000 | 4.12 | 0.00 | 0.00 | 4.02 |
950 | 989 | 3.064545 | GCCTTTAGAAGTAGCTGCACATG | 59.935 | 47.826 | 4.12 | 0.00 | 0.00 | 3.21 |
1162 | 1209 | 2.046892 | GGCATCACAGGTGACGCT | 60.047 | 61.111 | 18.32 | 0.00 | 46.67 | 5.07 |
1179 | 1226 | 1.876714 | CTCGGTAACATGTCCGGCG | 60.877 | 63.158 | 21.82 | 12.05 | 45.79 | 6.46 |
1215 | 1262 | 0.107654 | GAAGCGTACCATGGAGCCTT | 60.108 | 55.000 | 21.47 | 14.28 | 0.00 | 4.35 |
1405 | 1452 | 6.817765 | TCCCAAATCTAACTCAACAATCAC | 57.182 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
1636 | 1683 | 8.010697 | TCCACTAGAGGATAAATTCAGATACCA | 58.989 | 37.037 | 4.58 | 0.00 | 31.23 | 3.25 |
1658 | 1705 | 2.422093 | GGGATGGAACCAGAGAATCCAC | 60.422 | 54.545 | 11.10 | 0.42 | 45.47 | 4.02 |
1677 | 1724 | 1.515020 | CCTTGAGAGTGAGCGAGGG | 59.485 | 63.158 | 0.00 | 0.00 | 32.92 | 4.30 |
1752 | 1799 | 3.071023 | CCGTTATCATCCCAAGCTCCTTA | 59.929 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
1773 | 1820 | 4.192317 | ACAGCGAAAGTATTCTCAATCCC | 58.808 | 43.478 | 0.00 | 0.00 | 33.17 | 3.85 |
1785 | 1832 | 3.308866 | GTGAGTTGTTGTACAGCGAAAGT | 59.691 | 43.478 | 0.59 | 0.00 | 34.34 | 2.66 |
1791 | 1838 | 2.943033 | ACCAAGTGAGTTGTTGTACAGC | 59.057 | 45.455 | 2.25 | 2.25 | 33.87 | 4.40 |
1825 | 1872 | 0.768221 | TGAAGCTCCCCAAGTGAGGT | 60.768 | 55.000 | 0.00 | 0.00 | 42.05 | 3.85 |
1882 | 1929 | 1.409427 | CTCGGGCGGAAGACTAGAAAT | 59.591 | 52.381 | 0.00 | 0.00 | 40.87 | 2.17 |
1889 | 1936 | 4.821589 | CCAGCTCGGGCGGAAGAC | 62.822 | 72.222 | 9.70 | 0.00 | 44.37 | 3.01 |
2318 | 2654 | 2.512515 | CTGCAGTAAGCTCGCCCC | 60.513 | 66.667 | 5.25 | 0.00 | 45.94 | 5.80 |
2329 | 2665 | 3.425713 | CAACGCGATGGCTGCAGT | 61.426 | 61.111 | 15.93 | 0.00 | 36.88 | 4.40 |
2341 | 2677 | 4.356289 | ACAACAAGATTTACCAACAACGC | 58.644 | 39.130 | 0.00 | 0.00 | 0.00 | 4.84 |
2444 | 2792 | 3.866651 | TCTGACAAGAAGCTGCTATTCC | 58.133 | 45.455 | 0.90 | 0.00 | 0.00 | 3.01 |
2461 | 2827 | 2.957402 | AAGGCAGACAATGGTTCTGA | 57.043 | 45.000 | 5.21 | 0.00 | 33.65 | 3.27 |
2783 | 3152 | 3.896888 | CAGTCTAAGGATCCTCAGCAGAT | 59.103 | 47.826 | 16.52 | 0.00 | 0.00 | 2.90 |
2909 | 4364 | 9.206870 | TCATTGAAGGAAAATATGCAAAACTTC | 57.793 | 29.630 | 0.00 | 0.00 | 35.05 | 3.01 |
3382 | 8976 | 1.004044 | CAGAGAGCCACAAAGTCCCAT | 59.996 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
3426 | 9020 | 2.047061 | TGTTCCATTCCCCTATCCGAG | 58.953 | 52.381 | 0.00 | 0.00 | 0.00 | 4.63 |
3433 | 9045 | 3.075882 | TCTTCATGTTGTTCCATTCCCCT | 59.924 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
3440 | 9052 | 6.329496 | GTTTCAAGTTCTTCATGTTGTTCCA | 58.671 | 36.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3498 | 9110 | 4.771903 | ACCATAACCACAAACCAAAAACC | 58.228 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
3573 | 9185 | 1.693062 | ACCTTTTGTTGCATGGCATCA | 59.307 | 42.857 | 0.00 | 0.00 | 38.76 | 3.07 |
3670 | 9282 | 3.057174 | ACTTGCCTTGAACGTTGAAACAA | 60.057 | 39.130 | 5.00 | 10.24 | 0.00 | 2.83 |
3751 | 9364 | 4.142004 | CGTTACCCCTGACTAAAGCTGTAT | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
3754 | 9367 | 2.618053 | CGTTACCCCTGACTAAAGCTG | 58.382 | 52.381 | 0.00 | 0.00 | 0.00 | 4.24 |
3761 | 9374 | 1.198759 | ATGCACCGTTACCCCTGACT | 61.199 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3767 | 9380 | 0.036765 | TGAGACATGCACCGTTACCC | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3773 | 9386 | 1.004595 | CATGAGTGAGACATGCACCG | 58.995 | 55.000 | 0.00 | 0.00 | 38.58 | 4.94 |
3797 | 9410 | 7.815549 | TGAGATTTATTACAACAGACGCTTACA | 59.184 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3837 | 9450 | 2.421424 | CACTGACCAAAGCAGAATAGGC | 59.579 | 50.000 | 0.00 | 0.00 | 36.86 | 3.93 |
3844 | 9457 | 2.489329 | CCATTACCACTGACCAAAGCAG | 59.511 | 50.000 | 0.00 | 0.00 | 39.26 | 4.24 |
3854 | 9467 | 2.715046 | AGACATGCACCATTACCACTG | 58.285 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
3875 | 9488 | 5.353956 | ACAGACGCATATGAAAACATAAGCA | 59.646 | 36.000 | 6.97 | 0.00 | 33.01 | 3.91 |
3879 | 9492 | 6.735678 | ACAACAGACGCATATGAAAACATA | 57.264 | 33.333 | 6.97 | 0.00 | 0.00 | 2.29 |
3886 | 9499 | 5.774498 | AGATCTACAACAGACGCATATGA | 57.226 | 39.130 | 6.97 | 0.00 | 35.62 | 2.15 |
3887 | 9500 | 9.626045 | TTATAAGATCTACAACAGACGCATATG | 57.374 | 33.333 | 0.00 | 0.00 | 35.62 | 1.78 |
3926 | 9997 | 5.811100 | GCCAAGTCTGTCCACTATAACTTAC | 59.189 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
3933 | 10004 | 2.260822 | ACAGCCAAGTCTGTCCACTAT | 58.739 | 47.619 | 0.00 | 0.00 | 43.28 | 2.12 |
3973 | 10044 | 7.026562 | CCATAACACGATGCTAACAAAAATGA | 58.973 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
3992 | 10063 | 6.687081 | TCCGAATCCACAAATAACCATAAC | 57.313 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
3996 | 10067 | 5.048364 | CACTTTCCGAATCCACAAATAACCA | 60.048 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4037 | 10108 | 4.864247 | AGTGAATGAAAACAACACTGTTGC | 59.136 | 37.500 | 19.86 | 6.15 | 45.25 | 4.17 |
4062 | 10133 | 3.822735 | CCTTGCATTCTTTTGACTCCTCA | 59.177 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
4063 | 10134 | 3.366781 | GCCTTGCATTCTTTTGACTCCTC | 60.367 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
4064 | 10135 | 2.560105 | GCCTTGCATTCTTTTGACTCCT | 59.440 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
4065 | 10136 | 2.560105 | AGCCTTGCATTCTTTTGACTCC | 59.440 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
4085 | 10156 | 5.972382 | GCGAAGTTCATAGTACTCACCTTAG | 59.028 | 44.000 | 0.00 | 0.00 | 0.00 | 2.18 |
4101 | 10172 | 3.308530 | CCAATCTTTTGGTGCGAAGTTC | 58.691 | 45.455 | 0.00 | 0.00 | 46.27 | 3.01 |
4169 | 10240 | 0.107945 | GCCCTCACACATCTCCAGTC | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4180 | 10251 | 4.007644 | CGAGCACCTGCCCTCACA | 62.008 | 66.667 | 0.00 | 0.00 | 43.38 | 3.58 |
4206 | 10277 | 2.040544 | GGGGTGATGACAACAGCGG | 61.041 | 63.158 | 8.56 | 0.00 | 35.07 | 5.52 |
4224 | 10295 | 0.669318 | TCTACCGCTCAAACGCTTGG | 60.669 | 55.000 | 0.00 | 0.00 | 33.01 | 3.61 |
4227 | 10298 | 0.666577 | GTGTCTACCGCTCAAACGCT | 60.667 | 55.000 | 0.00 | 0.00 | 0.00 | 5.07 |
4258 | 10329 | 1.342819 | GCACATGTTTGTTGCCCCTTA | 59.657 | 47.619 | 0.00 | 0.00 | 32.34 | 2.69 |
4304 | 10375 | 6.705863 | ATGAAAATAATCTGCCTTCTGGAC | 57.294 | 37.500 | 0.00 | 0.00 | 34.57 | 4.02 |
4321 | 10392 | 6.892658 | TTGCTTAGCCTTTCTGTATGAAAA | 57.107 | 33.333 | 0.29 | 0.00 | 43.25 | 2.29 |
4322 | 10393 | 6.892658 | TTTGCTTAGCCTTTCTGTATGAAA | 57.107 | 33.333 | 0.29 | 0.00 | 41.85 | 2.69 |
4335 | 10406 | 9.981114 | AAATATTACCATGTATTTTGCTTAGCC | 57.019 | 29.630 | 0.29 | 0.00 | 28.78 | 3.93 |
4366 | 10439 | 6.145696 | GGCCGATGTTATTTATGTAGTCACTC | 59.854 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
4368 | 10441 | 5.989777 | AGGCCGATGTTATTTATGTAGTCAC | 59.010 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4388 | 10461 | 2.310538 | CATGGGTGGAGATTTAAGGCC | 58.689 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
4403 | 10476 | 1.203052 | GCATGAACAACAGACCATGGG | 59.797 | 52.381 | 18.09 | 0.00 | 37.46 | 4.00 |
4404 | 10477 | 1.887854 | TGCATGAACAACAGACCATGG | 59.112 | 47.619 | 11.19 | 11.19 | 37.46 | 3.66 |
4406 | 10479 | 3.005050 | CACTTGCATGAACAACAGACCAT | 59.995 | 43.478 | 6.60 | 0.00 | 0.00 | 3.55 |
4407 | 10480 | 2.358582 | CACTTGCATGAACAACAGACCA | 59.641 | 45.455 | 6.60 | 0.00 | 0.00 | 4.02 |
4408 | 10481 | 2.618241 | TCACTTGCATGAACAACAGACC | 59.382 | 45.455 | 6.60 | 0.00 | 0.00 | 3.85 |
4409 | 10482 | 3.969117 | TCACTTGCATGAACAACAGAC | 57.031 | 42.857 | 6.60 | 0.00 | 0.00 | 3.51 |
4477 | 10578 | 8.837099 | TTGGATGTAATTAGGAACCATGAATT | 57.163 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
4480 | 10581 | 8.694540 | CATTTTGGATGTAATTAGGAACCATGA | 58.305 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
4488 | 10589 | 5.280945 | CGTGGCATTTTGGATGTAATTAGG | 58.719 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
4502 | 10603 | 2.643551 | CTTGAGTATCCCGTGGCATTT | 58.356 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
4529 | 10630 | 4.280929 | AGTTTGCCCCAAGAAGTTAATGAC | 59.719 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
4531 | 10632 | 4.871933 | AGTTTGCCCCAAGAAGTTAATG | 57.128 | 40.909 | 0.00 | 0.00 | 0.00 | 1.90 |
4533 | 10634 | 6.786122 | ACTATAGTTTGCCCCAAGAAGTTAA | 58.214 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
4539 | 10640 | 3.133362 | CGGTACTATAGTTTGCCCCAAGA | 59.867 | 47.826 | 11.40 | 0.00 | 0.00 | 3.02 |
4544 | 10645 | 3.118542 | CGTTCGGTACTATAGTTTGCCC | 58.881 | 50.000 | 11.40 | 5.71 | 0.00 | 5.36 |
4584 | 10685 | 5.186797 | GGTATGATAGGAATGGAGACCTGAG | 59.813 | 48.000 | 0.00 | 0.00 | 37.68 | 3.35 |
4601 | 10702 | 6.070995 | TGACGACCTTTTCACTTAGGTATGAT | 60.071 | 38.462 | 0.00 | 0.00 | 44.65 | 2.45 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.