Multiple sequence alignment - TraesCS6A01G134800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G134800 chr6A 100.000 2738 0 0 1 2738 106973565 106976302 0.000000e+00 5057.0
1 TraesCS6A01G134800 chr6A 91.209 455 33 5 1 453 88077025 88077474 1.800000e-171 612.0
2 TraesCS6A01G134800 chr6A 90.000 150 13 1 577 724 88072405 88072554 2.780000e-45 193.0
3 TraesCS6A01G134800 chr1D 93.890 1964 111 4 783 2738 470128498 470130460 0.000000e+00 2953.0
4 TraesCS6A01G134800 chr4B 96.283 1157 40 2 1583 2738 599830607 599831761 0.000000e+00 1895.0
5 TraesCS6A01G134800 chr4B 92.361 144 9 1 450 593 155719442 155719583 1.290000e-48 204.0
6 TraesCS6A01G134800 chr7A 78.392 1791 342 33 956 2719 642933212 642931440 0.000000e+00 1122.0
7 TraesCS6A01G134800 chr7A 74.699 747 172 16 1022 1761 127289558 127288822 1.580000e-82 316.0
8 TraesCS6A01G134800 chr2A 77.809 1798 368 26 956 2738 174021201 174019420 0.000000e+00 1081.0
9 TraesCS6A01G134800 chr2A 76.721 1976 400 46 786 2738 530571996 530573934 0.000000e+00 1046.0
10 TraesCS6A01G134800 chr1A 77.889 1800 355 38 960 2738 348722084 348723861 0.000000e+00 1079.0
11 TraesCS6A01G134800 chr3B 84.105 648 101 2 2085 2731 807168314 807167668 2.310000e-175 625.0
12 TraesCS6A01G134800 chr3B 90.789 456 37 5 1 453 35065657 35065204 3.020000e-169 604.0
13 TraesCS6A01G134800 chr3B 90.789 456 37 5 1 453 35150007 35149554 3.020000e-169 604.0
14 TraesCS6A01G134800 chr3B 93.056 144 8 1 450 593 223214512 223214371 2.760000e-50 209.0
15 TraesCS6A01G134800 chr6B 79.907 856 160 11 956 1805 57129246 57130095 3.870000e-173 617.0
16 TraesCS6A01G134800 chr6B 84.013 613 96 2 2108 2719 57130407 57131018 3.040000e-164 588.0
17 TraesCS6A01G134800 chr6B 74.894 705 171 5 1046 1747 673855466 673856167 1.580000e-82 316.0
18 TraesCS6A01G134800 chr6B 93.056 144 8 1 450 593 43026299 43026158 2.760000e-50 209.0
19 TraesCS6A01G134800 chr2B 79.326 861 168 9 968 1823 516283040 516282185 1.820000e-166 595.0
20 TraesCS6A01G134800 chr2B 83.677 631 101 2 2108 2737 516281891 516281262 6.530000e-166 593.0
21 TraesCS6A01G134800 chr2B 74.734 752 185 4 1048 1796 614412589 614413338 5.650000e-87 331.0
22 TraesCS6A01G134800 chr2B 74.369 753 186 6 1048 1796 614307161 614307910 5.690000e-82 315.0
23 TraesCS6A01G134800 chr2B 93.706 143 7 1 450 592 679388848 679388708 2.140000e-51 213.0
24 TraesCS6A01G134800 chr3A 75.912 685 159 3 1026 1707 750733537 750734218 2.020000e-91 346.0
25 TraesCS6A01G134800 chr3A 92.903 155 9 2 428 580 210156910 210156756 9.870000e-55 224.0
26 TraesCS6A01G134800 chr7B 93.590 156 10 0 577 732 640906629 640906474 1.640000e-57 233.0
27 TraesCS6A01G134800 chr7B 91.837 147 10 1 450 596 461740226 461740082 1.290000e-48 204.0
28 TraesCS6A01G134800 chr7B 91.667 60 3 1 585 644 217226396 217226339 6.280000e-12 82.4
29 TraesCS6A01G134800 chr4D 92.617 149 9 1 577 725 245242551 245242405 2.140000e-51 213.0
30 TraesCS6A01G134800 chr4D 92.568 148 9 1 577 724 245247822 245247677 7.680000e-51 211.0
31 TraesCS6A01G134800 chr5B 93.056 144 8 1 450 593 240607982 240608123 2.760000e-50 209.0
32 TraesCS6A01G134800 chr1B 93.056 144 7 2 450 593 609541392 609541252 9.940000e-50 207.0
33 TraesCS6A01G134800 chr1B 91.892 148 10 1 577 724 179501187 179501042 3.570000e-49 206.0
34 TraesCS6A01G134800 chrUn 92.361 144 9 1 450 593 4608447 4608588 1.290000e-48 204.0
35 TraesCS6A01G134800 chrUn 80.982 163 23 6 568 724 16601717 16601557 3.700000e-24 122.0
36 TraesCS6A01G134800 chr2D 90.541 148 12 1 577 724 13248284 13248139 7.740000e-46 195.0
37 TraesCS6A01G134800 chr7D 84.615 143 22 0 575 717 595397344 595397486 2.840000e-30 143.0
38 TraesCS6A01G134800 chr7D 98.077 52 1 0 725 776 151913621 151913570 1.040000e-14 91.6
39 TraesCS6A01G134800 chr5D 93.671 79 5 0 647 725 114591633 114591711 4.790000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G134800 chr6A 106973565 106976302 2737 False 5057.0 5057 100.0000 1 2738 1 chr6A.!!$F3 2737
1 TraesCS6A01G134800 chr1D 470128498 470130460 1962 False 2953.0 2953 93.8900 783 2738 1 chr1D.!!$F1 1955
2 TraesCS6A01G134800 chr4B 599830607 599831761 1154 False 1895.0 1895 96.2830 1583 2738 1 chr4B.!!$F2 1155
3 TraesCS6A01G134800 chr7A 642931440 642933212 1772 True 1122.0 1122 78.3920 956 2719 1 chr7A.!!$R2 1763
4 TraesCS6A01G134800 chr7A 127288822 127289558 736 True 316.0 316 74.6990 1022 1761 1 chr7A.!!$R1 739
5 TraesCS6A01G134800 chr2A 174019420 174021201 1781 True 1081.0 1081 77.8090 956 2738 1 chr2A.!!$R1 1782
6 TraesCS6A01G134800 chr2A 530571996 530573934 1938 False 1046.0 1046 76.7210 786 2738 1 chr2A.!!$F1 1952
7 TraesCS6A01G134800 chr1A 348722084 348723861 1777 False 1079.0 1079 77.8890 960 2738 1 chr1A.!!$F1 1778
8 TraesCS6A01G134800 chr3B 807167668 807168314 646 True 625.0 625 84.1050 2085 2731 1 chr3B.!!$R4 646
9 TraesCS6A01G134800 chr6B 57129246 57131018 1772 False 602.5 617 81.9600 956 2719 2 chr6B.!!$F2 1763
10 TraesCS6A01G134800 chr6B 673855466 673856167 701 False 316.0 316 74.8940 1046 1747 1 chr6B.!!$F1 701
11 TraesCS6A01G134800 chr2B 516281262 516283040 1778 True 594.0 595 81.5015 968 2737 2 chr2B.!!$R2 1769
12 TraesCS6A01G134800 chr2B 614412589 614413338 749 False 331.0 331 74.7340 1048 1796 1 chr2B.!!$F2 748
13 TraesCS6A01G134800 chr2B 614307161 614307910 749 False 315.0 315 74.3690 1048 1796 1 chr2B.!!$F1 748
14 TraesCS6A01G134800 chr3A 750733537 750734218 681 False 346.0 346 75.9120 1026 1707 1 chr3A.!!$F1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
50 51 0.029433 CTTGATCAGGACGCGATCGA 59.971 55.0 21.57 3.54 41.85 3.59 F
52 53 0.029433 TGATCAGGACGCGATCGAAG 59.971 55.0 21.57 14.33 41.85 3.79 F
765 766 0.032678 ATCTGGCTCGCTTACATCCG 59.967 55.0 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1011 1016 0.396556 TAGCAGCACCGGGAGTATCA 60.397 55.0 6.32 0.0 36.25 2.15 R
1370 1375 0.523335 CGATGGCTTTGCTAAACCGC 60.523 55.0 0.00 0.0 0.00 5.68 R
2152 2171 0.461961 GGAGACTCATTGCGCTAGGT 59.538 55.0 9.73 1.5 0.00 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.972872 AGCATAGAAATTGGCCTCCG 58.027 50.000 3.32 0.00 0.00 4.63
21 22 1.212935 AGCATAGAAATTGGCCTCCGT 59.787 47.619 3.32 0.00 0.00 4.69
22 23 1.334869 GCATAGAAATTGGCCTCCGTG 59.665 52.381 3.32 0.00 0.00 4.94
23 24 2.643551 CATAGAAATTGGCCTCCGTGT 58.356 47.619 3.32 0.00 0.00 4.49
24 25 2.107950 TAGAAATTGGCCTCCGTGTG 57.892 50.000 3.32 0.00 0.00 3.82
25 26 0.400213 AGAAATTGGCCTCCGTGTGA 59.600 50.000 3.32 0.00 0.00 3.58
26 27 0.804989 GAAATTGGCCTCCGTGTGAG 59.195 55.000 3.32 0.00 41.07 3.51
27 28 0.400213 AAATTGGCCTCCGTGTGAGA 59.600 50.000 3.32 0.00 44.42 3.27
28 29 0.400213 AATTGGCCTCCGTGTGAGAA 59.600 50.000 3.32 0.00 44.42 2.87
29 30 0.400213 ATTGGCCTCCGTGTGAGAAA 59.600 50.000 3.32 0.00 44.42 2.52
30 31 0.250295 TTGGCCTCCGTGTGAGAAAG 60.250 55.000 3.32 0.00 44.42 2.62
31 32 2.035442 GGCCTCCGTGTGAGAAAGC 61.035 63.158 0.00 0.00 44.42 3.51
32 33 1.004440 GCCTCCGTGTGAGAAAGCT 60.004 57.895 0.00 0.00 44.42 3.74
33 34 0.603975 GCCTCCGTGTGAGAAAGCTT 60.604 55.000 0.00 0.00 44.42 3.74
34 35 1.151668 CCTCCGTGTGAGAAAGCTTG 58.848 55.000 0.00 0.00 44.42 4.01
35 36 1.270305 CCTCCGTGTGAGAAAGCTTGA 60.270 52.381 0.00 0.00 44.42 3.02
36 37 2.613977 CCTCCGTGTGAGAAAGCTTGAT 60.614 50.000 0.00 0.00 44.42 2.57
37 38 2.670414 CTCCGTGTGAGAAAGCTTGATC 59.330 50.000 0.00 1.53 44.42 2.92
38 39 2.037121 TCCGTGTGAGAAAGCTTGATCA 59.963 45.455 0.00 4.59 0.00 2.92
39 40 2.414481 CCGTGTGAGAAAGCTTGATCAG 59.586 50.000 12.78 3.85 0.00 2.90
40 41 2.414481 CGTGTGAGAAAGCTTGATCAGG 59.586 50.000 12.78 0.00 0.00 3.86
41 42 3.668447 GTGTGAGAAAGCTTGATCAGGA 58.332 45.455 9.36 2.54 0.00 3.86
42 43 3.434984 GTGTGAGAAAGCTTGATCAGGAC 59.565 47.826 9.36 9.60 0.00 3.85
43 44 2.670414 GTGAGAAAGCTTGATCAGGACG 59.330 50.000 9.36 0.00 0.00 4.79
44 45 1.663135 GAGAAAGCTTGATCAGGACGC 59.337 52.381 9.36 4.76 0.00 5.19
45 46 0.371645 GAAAGCTTGATCAGGACGCG 59.628 55.000 9.36 3.53 0.00 6.01
46 47 0.037326 AAAGCTTGATCAGGACGCGA 60.037 50.000 15.93 0.00 0.00 5.87
47 48 0.176680 AAGCTTGATCAGGACGCGAT 59.823 50.000 15.93 0.00 0.00 4.58
48 49 0.249238 AGCTTGATCAGGACGCGATC 60.249 55.000 15.93 5.28 39.82 3.69
49 50 1.543941 GCTTGATCAGGACGCGATCG 61.544 60.000 15.93 11.69 41.85 3.69
50 51 0.029433 CTTGATCAGGACGCGATCGA 59.971 55.000 21.57 3.54 41.85 3.59
51 52 0.454196 TTGATCAGGACGCGATCGAA 59.546 50.000 21.57 0.00 41.85 3.71
52 53 0.029433 TGATCAGGACGCGATCGAAG 59.971 55.000 21.57 14.33 41.85 3.79
53 54 0.308068 GATCAGGACGCGATCGAAGA 59.692 55.000 21.57 6.67 45.75 2.87
54 55 0.955178 ATCAGGACGCGATCGAAGAT 59.045 50.000 21.57 8.71 45.12 2.40
55 56 0.308068 TCAGGACGCGATCGAAGATC 59.692 55.000 21.57 9.41 45.12 2.75
56 57 0.994241 CAGGACGCGATCGAAGATCG 60.994 60.000 21.57 23.21 45.12 3.69
66 67 1.598894 TCGAAGATCGAAACGTCACG 58.401 50.000 0.00 0.00 46.90 4.35
67 68 0.633733 CGAAGATCGAAACGTCACGG 59.366 55.000 0.35 0.00 43.74 4.94
68 69 1.726892 CGAAGATCGAAACGTCACGGA 60.727 52.381 0.35 0.00 43.74 4.69
69 70 2.527100 GAAGATCGAAACGTCACGGAT 58.473 47.619 0.35 0.00 0.00 4.18
70 71 1.909376 AGATCGAAACGTCACGGATG 58.091 50.000 0.35 0.00 0.00 3.51
71 72 1.201647 AGATCGAAACGTCACGGATGT 59.798 47.619 0.35 0.00 32.68 3.06
72 73 2.421073 AGATCGAAACGTCACGGATGTA 59.579 45.455 0.35 0.00 30.95 2.29
73 74 1.967762 TCGAAACGTCACGGATGTAC 58.032 50.000 0.35 0.00 30.95 2.90
74 75 0.631745 CGAAACGTCACGGATGTACG 59.368 55.000 0.35 0.00 42.17 3.67
75 76 0.364515 GAAACGTCACGGATGTACGC 59.635 55.000 0.35 0.00 40.18 4.42
76 77 1.010419 AAACGTCACGGATGTACGCC 61.010 55.000 0.35 0.00 40.18 5.68
92 93 3.198582 CCGAGTCGGGGAGAGAAC 58.801 66.667 24.39 0.00 44.15 3.01
93 94 2.762234 CCGAGTCGGGGAGAGAACG 61.762 68.421 24.39 0.00 44.15 3.95
94 95 2.762234 CGAGTCGGGGAGAGAACGG 61.762 68.421 4.10 0.00 0.00 4.44
95 96 2.362632 AGTCGGGGAGAGAACGGG 60.363 66.667 0.00 0.00 0.00 5.28
96 97 4.144703 GTCGGGGAGAGAACGGGC 62.145 72.222 0.00 0.00 0.00 6.13
99 100 3.009714 GGGGAGAGAACGGGCCTT 61.010 66.667 0.84 0.00 0.00 4.35
100 101 2.269241 GGGAGAGAACGGGCCTTG 59.731 66.667 0.84 0.00 0.00 3.61
101 102 2.269241 GGAGAGAACGGGCCTTGG 59.731 66.667 0.84 0.00 0.00 3.61
102 103 2.291043 GGAGAGAACGGGCCTTGGA 61.291 63.158 0.84 0.00 0.00 3.53
103 104 1.219393 GAGAGAACGGGCCTTGGAG 59.781 63.158 0.84 0.00 0.00 3.86
104 105 2.245438 GAGAGAACGGGCCTTGGAGG 62.245 65.000 0.84 0.00 38.80 4.30
105 106 2.203938 AGAACGGGCCTTGGAGGA 60.204 61.111 0.84 0.00 37.67 3.71
106 107 2.245438 GAGAACGGGCCTTGGAGGAG 62.245 65.000 0.84 0.00 37.67 3.69
107 108 3.330720 AACGGGCCTTGGAGGAGG 61.331 66.667 0.84 0.00 37.67 4.30
108 109 3.864983 AACGGGCCTTGGAGGAGGA 62.865 63.158 0.84 0.00 37.67 3.71
109 110 3.474570 CGGGCCTTGGAGGAGGAG 61.475 72.222 0.84 0.00 37.67 3.69
110 111 3.093172 GGGCCTTGGAGGAGGAGG 61.093 72.222 0.84 0.00 37.67 4.30
112 113 4.168291 GCCTTGGAGGAGGAGGCG 62.168 72.222 0.00 0.00 45.64 5.52
113 114 2.364317 CCTTGGAGGAGGAGGCGA 60.364 66.667 0.00 0.00 37.67 5.54
114 115 1.990060 CCTTGGAGGAGGAGGCGAA 60.990 63.158 0.00 0.00 37.67 4.70
115 116 1.219393 CTTGGAGGAGGAGGCGAAC 59.781 63.158 0.00 0.00 0.00 3.95
116 117 2.564553 CTTGGAGGAGGAGGCGAACG 62.565 65.000 0.00 0.00 0.00 3.95
117 118 3.839432 GGAGGAGGAGGCGAACGG 61.839 72.222 0.00 0.00 0.00 4.44
118 119 3.839432 GAGGAGGAGGCGAACGGG 61.839 72.222 0.00 0.00 0.00 5.28
119 120 4.698625 AGGAGGAGGCGAACGGGT 62.699 66.667 0.00 0.00 0.00 5.28
120 121 3.703127 GGAGGAGGCGAACGGGTT 61.703 66.667 0.00 0.00 0.00 4.11
121 122 2.434359 GAGGAGGCGAACGGGTTG 60.434 66.667 0.00 0.00 0.00 3.77
122 123 4.699522 AGGAGGCGAACGGGTTGC 62.700 66.667 0.00 0.00 0.00 4.17
144 145 4.394712 GTGGGAGCGGGTGGAGTG 62.395 72.222 0.00 0.00 0.00 3.51
145 146 4.631740 TGGGAGCGGGTGGAGTGA 62.632 66.667 0.00 0.00 0.00 3.41
146 147 3.775654 GGGAGCGGGTGGAGTGAG 61.776 72.222 0.00 0.00 0.00 3.51
147 148 2.680352 GGAGCGGGTGGAGTGAGA 60.680 66.667 0.00 0.00 0.00 3.27
148 149 2.716017 GGAGCGGGTGGAGTGAGAG 61.716 68.421 0.00 0.00 0.00 3.20
149 150 1.679305 GAGCGGGTGGAGTGAGAGA 60.679 63.158 0.00 0.00 0.00 3.10
150 151 1.000993 AGCGGGTGGAGTGAGAGAT 59.999 57.895 0.00 0.00 0.00 2.75
151 152 1.142748 GCGGGTGGAGTGAGAGATG 59.857 63.158 0.00 0.00 0.00 2.90
152 153 1.819229 CGGGTGGAGTGAGAGATGG 59.181 63.158 0.00 0.00 0.00 3.51
153 154 1.524482 GGGTGGAGTGAGAGATGGC 59.476 63.158 0.00 0.00 0.00 4.40
154 155 1.267574 GGGTGGAGTGAGAGATGGCA 61.268 60.000 0.00 0.00 0.00 4.92
155 156 0.177604 GGTGGAGTGAGAGATGGCAG 59.822 60.000 0.00 0.00 0.00 4.85
156 157 0.461693 GTGGAGTGAGAGATGGCAGC 60.462 60.000 0.00 0.00 0.00 5.25
157 158 1.227205 GGAGTGAGAGATGGCAGCG 60.227 63.158 0.00 0.00 0.00 5.18
158 159 1.227205 GAGTGAGAGATGGCAGCGG 60.227 63.158 0.00 0.00 0.00 5.52
159 160 2.894387 GTGAGAGATGGCAGCGGC 60.894 66.667 0.00 0.00 40.13 6.53
160 161 3.393106 TGAGAGATGGCAGCGGCA 61.393 61.111 11.88 9.25 43.71 5.69
161 162 2.588314 GAGAGATGGCAGCGGCAG 60.588 66.667 11.88 0.00 42.43 4.85
162 163 4.853050 AGAGATGGCAGCGGCAGC 62.853 66.667 11.88 9.05 44.76 5.25
192 193 4.397832 GGGCGCGGGTGAGGTTTA 62.398 66.667 8.83 0.00 0.00 2.01
193 194 2.818274 GGCGCGGGTGAGGTTTAG 60.818 66.667 8.83 0.00 0.00 1.85
194 195 2.818274 GCGCGGGTGAGGTTTAGG 60.818 66.667 8.83 0.00 0.00 2.69
195 196 2.125269 CGCGGGTGAGGTTTAGGG 60.125 66.667 0.00 0.00 0.00 3.53
196 197 2.951101 CGCGGGTGAGGTTTAGGGT 61.951 63.158 0.00 0.00 0.00 4.34
197 198 1.377612 GCGGGTGAGGTTTAGGGTT 59.622 57.895 0.00 0.00 0.00 4.11
198 199 0.251033 GCGGGTGAGGTTTAGGGTTT 60.251 55.000 0.00 0.00 0.00 3.27
199 200 1.530323 CGGGTGAGGTTTAGGGTTTG 58.470 55.000 0.00 0.00 0.00 2.93
200 201 1.884928 CGGGTGAGGTTTAGGGTTTGG 60.885 57.143 0.00 0.00 0.00 3.28
201 202 1.426215 GGGTGAGGTTTAGGGTTTGGA 59.574 52.381 0.00 0.00 0.00 3.53
202 203 2.554564 GGGTGAGGTTTAGGGTTTGGAG 60.555 54.545 0.00 0.00 0.00 3.86
203 204 2.554564 GGTGAGGTTTAGGGTTTGGAGG 60.555 54.545 0.00 0.00 0.00 4.30
204 205 1.708551 TGAGGTTTAGGGTTTGGAGGG 59.291 52.381 0.00 0.00 0.00 4.30
205 206 1.005569 GAGGTTTAGGGTTTGGAGGGG 59.994 57.143 0.00 0.00 0.00 4.79
206 207 1.078115 GGTTTAGGGTTTGGAGGGGA 58.922 55.000 0.00 0.00 0.00 4.81
207 208 1.005569 GGTTTAGGGTTTGGAGGGGAG 59.994 57.143 0.00 0.00 0.00 4.30
208 209 0.702316 TTTAGGGTTTGGAGGGGAGC 59.298 55.000 0.00 0.00 0.00 4.70
209 210 1.559065 TTAGGGTTTGGAGGGGAGCG 61.559 60.000 0.00 0.00 0.00 5.03
210 211 4.426313 GGGTTTGGAGGGGAGCGG 62.426 72.222 0.00 0.00 0.00 5.52
228 229 4.441695 CGCGGCTGGAGAAGAGCA 62.442 66.667 0.00 0.00 38.27 4.26
229 230 2.511145 GCGGCTGGAGAAGAGCAG 60.511 66.667 0.00 0.00 38.27 4.24
230 231 2.511145 CGGCTGGAGAAGAGCAGC 60.511 66.667 0.00 0.00 38.27 5.25
231 232 2.667418 GGCTGGAGAAGAGCAGCA 59.333 61.111 0.00 0.00 42.00 4.41
232 233 1.449956 GGCTGGAGAAGAGCAGCAG 60.450 63.158 0.00 0.00 42.00 4.24
233 234 2.107903 GCTGGAGAAGAGCAGCAGC 61.108 63.158 0.00 0.00 40.14 5.25
252 253 2.809601 CGACGGGGTTTCTGCGAG 60.810 66.667 0.00 0.00 0.00 5.03
253 254 2.434359 GACGGGGTTTCTGCGAGG 60.434 66.667 0.00 0.00 0.00 4.63
254 255 3.952628 GACGGGGTTTCTGCGAGGG 62.953 68.421 0.00 0.00 0.00 4.30
255 256 3.702048 CGGGGTTTCTGCGAGGGA 61.702 66.667 0.00 0.00 0.00 4.20
256 257 2.269241 GGGGTTTCTGCGAGGGAG 59.731 66.667 0.00 0.00 0.00 4.30
257 258 2.269241 GGGTTTCTGCGAGGGAGG 59.731 66.667 0.00 0.00 0.00 4.30
258 259 2.436824 GGTTTCTGCGAGGGAGGC 60.437 66.667 0.00 0.00 0.00 4.70
259 260 2.815647 GTTTCTGCGAGGGAGGCG 60.816 66.667 0.00 0.00 0.00 5.52
260 261 2.994995 TTTCTGCGAGGGAGGCGA 60.995 61.111 0.00 0.00 0.00 5.54
261 262 2.359169 TTTCTGCGAGGGAGGCGAT 61.359 57.895 0.00 0.00 0.00 4.58
262 263 2.578163 TTTCTGCGAGGGAGGCGATG 62.578 60.000 0.00 0.00 0.00 3.84
274 275 3.696426 GCGATGCGCGGCTAAGAG 61.696 66.667 8.83 0.00 44.55 2.85
275 276 3.032609 CGATGCGCGGCTAAGAGG 61.033 66.667 8.83 0.00 36.03 3.69
276 277 2.417516 GATGCGCGGCTAAGAGGA 59.582 61.111 8.83 0.00 0.00 3.71
277 278 1.663074 GATGCGCGGCTAAGAGGAG 60.663 63.158 8.83 0.00 0.00 3.69
278 279 3.157217 ATGCGCGGCTAAGAGGAGG 62.157 63.158 8.83 0.00 0.00 4.30
279 280 4.593864 GCGCGGCTAAGAGGAGGG 62.594 72.222 8.83 0.00 0.00 4.30
280 281 2.833582 CGCGGCTAAGAGGAGGGA 60.834 66.667 0.00 0.00 0.00 4.20
281 282 2.851071 CGCGGCTAAGAGGAGGGAG 61.851 68.421 0.00 0.00 0.00 4.30
282 283 3.133946 CGGCTAAGAGGAGGGAGC 58.866 66.667 0.00 0.00 0.00 4.70
283 284 2.851071 CGGCTAAGAGGAGGGAGCG 61.851 68.421 0.00 0.00 35.71 5.03
284 285 2.503382 GGCTAAGAGGAGGGAGCGG 61.503 68.421 0.00 0.00 35.71 5.52
285 286 3.133946 CTAAGAGGAGGGAGCGGC 58.866 66.667 0.00 0.00 0.00 6.53
286 287 2.833582 TAAGAGGAGGGAGCGGCG 60.834 66.667 0.51 0.51 0.00 6.46
302 303 2.512515 CGCAGCAGGAGGGTAAGC 60.513 66.667 0.00 0.00 0.00 3.09
303 304 2.512515 GCAGCAGGAGGGTAAGCG 60.513 66.667 0.00 0.00 0.00 4.68
304 305 2.982130 CAGCAGGAGGGTAAGCGT 59.018 61.111 0.00 0.00 0.00 5.07
305 306 1.448540 CAGCAGGAGGGTAAGCGTG 60.449 63.158 0.00 0.00 0.00 5.34
306 307 1.609501 AGCAGGAGGGTAAGCGTGA 60.610 57.895 0.00 0.00 0.00 4.35
307 308 1.153549 GCAGGAGGGTAAGCGTGAG 60.154 63.158 0.00 0.00 0.00 3.51
308 309 1.517832 CAGGAGGGTAAGCGTGAGG 59.482 63.158 0.00 0.00 0.00 3.86
310 311 1.218316 GGAGGGTAAGCGTGAGGTG 59.782 63.158 0.00 0.00 43.76 4.00
311 312 1.448013 GAGGGTAAGCGTGAGGTGC 60.448 63.158 0.00 0.00 43.76 5.01
312 313 2.813908 GGGTAAGCGTGAGGTGCG 60.814 66.667 0.00 0.00 43.76 5.34
313 314 2.813908 GGTAAGCGTGAGGTGCGG 60.814 66.667 0.00 0.00 43.76 5.69
314 315 3.488090 GTAAGCGTGAGGTGCGGC 61.488 66.667 0.00 0.00 43.76 6.53
343 344 4.778143 AGGGTGGCGGCGCTAAAG 62.778 66.667 32.30 0.00 0.00 1.85
346 347 4.770874 GTGGCGGCGCTAAAGGGA 62.771 66.667 32.30 4.16 0.00 4.20
347 348 4.467084 TGGCGGCGCTAAAGGGAG 62.467 66.667 32.30 0.00 0.00 4.30
377 378 2.954868 GCGTAGATCGGTGGCACG 60.955 66.667 12.17 7.33 40.26 5.34
378 379 2.954868 CGTAGATCGGTGGCACGC 60.955 66.667 12.17 3.76 38.67 5.34
379 380 2.954868 GTAGATCGGTGGCACGCG 60.955 66.667 18.41 18.41 41.51 6.01
380 381 4.201679 TAGATCGGTGGCACGCGG 62.202 66.667 22.21 11.05 41.51 6.46
389 390 4.388499 GGCACGCGGAGGAAGGAA 62.388 66.667 12.47 0.00 0.00 3.36
390 391 2.815647 GCACGCGGAGGAAGGAAG 60.816 66.667 12.47 0.00 0.00 3.46
391 392 2.125512 CACGCGGAGGAAGGAAGG 60.126 66.667 12.47 0.00 0.00 3.46
392 393 2.603776 ACGCGGAGGAAGGAAGGT 60.604 61.111 12.47 0.00 0.00 3.50
393 394 2.125512 CGCGGAGGAAGGAAGGTG 60.126 66.667 0.00 0.00 0.00 4.00
394 395 2.436824 GCGGAGGAAGGAAGGTGC 60.437 66.667 0.00 0.00 0.00 5.01
395 396 2.125512 CGGAGGAAGGAAGGTGCG 60.126 66.667 0.00 0.00 0.00 5.34
396 397 2.269241 GGAGGAAGGAAGGTGCGG 59.731 66.667 0.00 0.00 0.00 5.69
397 398 2.436824 GAGGAAGGAAGGTGCGGC 60.437 66.667 0.00 0.00 0.00 6.53
398 399 4.394712 AGGAAGGAAGGTGCGGCG 62.395 66.667 0.51 0.51 0.00 6.46
437 438 2.681064 CGGGGAGGGACCGTGTTA 60.681 66.667 0.00 0.00 46.03 2.41
438 439 2.718073 CGGGGAGGGACCGTGTTAG 61.718 68.421 0.00 0.00 46.03 2.34
439 440 2.364780 GGGGAGGGACCGTGTTAGG 61.365 68.421 0.00 0.00 40.11 2.69
440 441 2.582978 GGAGGGACCGTGTTAGGC 59.417 66.667 0.00 0.00 33.69 3.93
441 442 1.988406 GGAGGGACCGTGTTAGGCT 60.988 63.158 0.00 0.00 33.69 4.58
442 443 1.218316 GAGGGACCGTGTTAGGCTG 59.782 63.158 0.00 0.00 33.69 4.85
443 444 1.229082 AGGGACCGTGTTAGGCTGA 60.229 57.895 0.00 0.00 33.69 4.26
444 445 0.617820 AGGGACCGTGTTAGGCTGAT 60.618 55.000 0.00 0.00 33.69 2.90
445 446 1.117150 GGGACCGTGTTAGGCTGATA 58.883 55.000 0.00 0.00 33.69 2.15
446 447 1.202498 GGGACCGTGTTAGGCTGATAC 60.202 57.143 0.00 0.00 33.69 2.24
447 448 1.202498 GGACCGTGTTAGGCTGATACC 60.202 57.143 0.00 0.00 33.69 2.73
448 449 1.479323 GACCGTGTTAGGCTGATACCA 59.521 52.381 0.00 0.00 33.69 3.25
449 450 2.102588 GACCGTGTTAGGCTGATACCAT 59.897 50.000 0.00 0.00 33.69 3.55
450 451 2.158957 ACCGTGTTAGGCTGATACCATG 60.159 50.000 0.00 0.00 33.69 3.66
451 452 2.158957 CCGTGTTAGGCTGATACCATGT 60.159 50.000 0.00 0.00 0.00 3.21
452 453 3.069016 CCGTGTTAGGCTGATACCATGTA 59.931 47.826 0.00 0.00 0.00 2.29
453 454 4.049186 CGTGTTAGGCTGATACCATGTAC 58.951 47.826 0.00 0.00 0.00 2.90
454 455 4.202121 CGTGTTAGGCTGATACCATGTACT 60.202 45.833 0.00 0.00 0.00 2.73
455 456 5.290386 GTGTTAGGCTGATACCATGTACTC 58.710 45.833 0.00 0.00 0.00 2.59
456 457 4.344102 TGTTAGGCTGATACCATGTACTCC 59.656 45.833 0.00 0.00 0.00 3.85
457 458 2.330216 AGGCTGATACCATGTACTCCC 58.670 52.381 0.00 0.00 0.00 4.30
458 459 2.090494 AGGCTGATACCATGTACTCCCT 60.090 50.000 0.00 0.00 0.00 4.20
459 460 2.300437 GGCTGATACCATGTACTCCCTC 59.700 54.545 0.00 0.00 0.00 4.30
460 461 2.300437 GCTGATACCATGTACTCCCTCC 59.700 54.545 0.00 0.00 0.00 4.30
461 462 2.558795 CTGATACCATGTACTCCCTCCG 59.441 54.545 0.00 0.00 0.00 4.63
462 463 2.091499 TGATACCATGTACTCCCTCCGT 60.091 50.000 0.00 0.00 0.00 4.69
463 464 2.537633 TACCATGTACTCCCTCCGTT 57.462 50.000 0.00 0.00 0.00 4.44
464 465 1.192428 ACCATGTACTCCCTCCGTTC 58.808 55.000 0.00 0.00 0.00 3.95
465 466 0.464452 CCATGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
466 467 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
467 468 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
468 469 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
469 470 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
470 471 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
471 472 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
472 473 3.345508 ACTCCCTCCGTTCCAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
473 474 2.910977 ACTCCCTCCGTTCCAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
474 475 3.329814 ACTCCCTCCGTTCCAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
475 476 3.681593 TCCCTCCGTTCCAAAATACTTG 58.318 45.455 0.00 0.00 0.00 3.16
476 477 3.328343 TCCCTCCGTTCCAAAATACTTGA 59.672 43.478 0.00 0.00 0.00 3.02
477 478 3.439129 CCCTCCGTTCCAAAATACTTGAC 59.561 47.826 0.00 0.00 0.00 3.18
478 479 4.324267 CCTCCGTTCCAAAATACTTGACT 58.676 43.478 0.00 0.00 0.00 3.41
479 480 4.760204 CCTCCGTTCCAAAATACTTGACTT 59.240 41.667 0.00 0.00 0.00 3.01
480 481 5.240844 CCTCCGTTCCAAAATACTTGACTTT 59.759 40.000 0.00 0.00 0.00 2.66
481 482 6.308371 TCCGTTCCAAAATACTTGACTTTC 57.692 37.500 0.00 0.00 0.00 2.62
482 483 5.823570 TCCGTTCCAAAATACTTGACTTTCA 59.176 36.000 0.00 0.00 0.00 2.69
483 484 6.488683 TCCGTTCCAAAATACTTGACTTTCAT 59.511 34.615 0.00 0.00 0.00 2.57
484 485 7.013846 TCCGTTCCAAAATACTTGACTTTCATT 59.986 33.333 0.00 0.00 0.00 2.57
485 486 7.651704 CCGTTCCAAAATACTTGACTTTCATTT 59.348 33.333 0.00 0.00 0.00 2.32
486 487 8.479280 CGTTCCAAAATACTTGACTTTCATTTG 58.521 33.333 0.00 0.00 0.00 2.32
487 488 9.313118 GTTCCAAAATACTTGACTTTCATTTGT 57.687 29.630 0.00 0.00 0.00 2.83
488 489 9.883142 TTCCAAAATACTTGACTTTCATTTGTT 57.117 25.926 0.00 0.00 0.00 2.83
489 490 9.528018 TCCAAAATACTTGACTTTCATTTGTTC 57.472 29.630 0.00 0.00 0.00 3.18
490 491 9.311916 CCAAAATACTTGACTTTCATTTGTTCA 57.688 29.630 0.00 0.00 0.00 3.18
563 564 9.941325 TTTTGATAAATGAAAGGCATGTATTGT 57.059 25.926 0.00 0.00 37.50 2.71
564 565 8.929827 TTGATAAATGAAAGGCATGTATTGTG 57.070 30.769 0.00 0.00 37.50 3.33
565 566 7.490840 TGATAAATGAAAGGCATGTATTGTGG 58.509 34.615 0.00 0.00 37.50 4.17
566 567 5.999205 AAATGAAAGGCATGTATTGTGGA 57.001 34.783 0.00 0.00 37.28 4.02
567 568 5.999205 AATGAAAGGCATGTATTGTGGAA 57.001 34.783 0.00 0.00 37.28 3.53
568 569 6.549433 AATGAAAGGCATGTATTGTGGAAT 57.451 33.333 0.00 0.00 37.28 3.01
569 570 5.327616 TGAAAGGCATGTATTGTGGAATG 57.672 39.130 0.00 0.00 0.00 2.67
570 571 4.160065 TGAAAGGCATGTATTGTGGAATGG 59.840 41.667 0.00 0.00 0.00 3.16
571 572 3.668141 AGGCATGTATTGTGGAATGGA 57.332 42.857 0.00 0.00 0.00 3.41
572 573 3.559069 AGGCATGTATTGTGGAATGGAG 58.441 45.455 0.00 0.00 0.00 3.86
573 574 2.624838 GGCATGTATTGTGGAATGGAGG 59.375 50.000 0.00 0.00 0.00 4.30
574 575 2.624838 GCATGTATTGTGGAATGGAGGG 59.375 50.000 0.00 0.00 0.00 4.30
575 576 3.688126 GCATGTATTGTGGAATGGAGGGA 60.688 47.826 0.00 0.00 0.00 4.20
576 577 3.931907 TGTATTGTGGAATGGAGGGAG 57.068 47.619 0.00 0.00 0.00 4.30
577 578 3.189606 TGTATTGTGGAATGGAGGGAGT 58.810 45.455 0.00 0.00 0.00 3.85
578 579 4.367166 TGTATTGTGGAATGGAGGGAGTA 58.633 43.478 0.00 0.00 0.00 2.59
579 580 4.408921 TGTATTGTGGAATGGAGGGAGTAG 59.591 45.833 0.00 0.00 0.00 2.57
580 581 2.940514 TGTGGAATGGAGGGAGTAGA 57.059 50.000 0.00 0.00 0.00 2.59
581 582 2.752030 TGTGGAATGGAGGGAGTAGAG 58.248 52.381 0.00 0.00 0.00 2.43
582 583 2.043227 GTGGAATGGAGGGAGTAGAGG 58.957 57.143 0.00 0.00 0.00 3.69
583 584 1.937350 TGGAATGGAGGGAGTAGAGGA 59.063 52.381 0.00 0.00 0.00 3.71
584 585 2.524440 TGGAATGGAGGGAGTAGAGGAT 59.476 50.000 0.00 0.00 0.00 3.24
585 586 3.051032 TGGAATGGAGGGAGTAGAGGATT 60.051 47.826 0.00 0.00 0.00 3.01
586 587 3.326297 GGAATGGAGGGAGTAGAGGATTG 59.674 52.174 0.00 0.00 0.00 2.67
587 588 4.227197 GAATGGAGGGAGTAGAGGATTGA 58.773 47.826 0.00 0.00 0.00 2.57
588 589 4.500389 ATGGAGGGAGTAGAGGATTGAT 57.500 45.455 0.00 0.00 0.00 2.57
589 590 3.581101 TGGAGGGAGTAGAGGATTGATG 58.419 50.000 0.00 0.00 0.00 3.07
590 591 2.301583 GGAGGGAGTAGAGGATTGATGC 59.698 54.545 0.00 0.00 0.00 3.91
591 592 2.968574 GAGGGAGTAGAGGATTGATGCA 59.031 50.000 0.00 0.00 0.00 3.96
592 593 3.387962 AGGGAGTAGAGGATTGATGCAA 58.612 45.455 0.00 0.00 0.00 4.08
593 594 3.135530 AGGGAGTAGAGGATTGATGCAAC 59.864 47.826 0.00 0.00 0.00 4.17
594 595 3.135530 GGGAGTAGAGGATTGATGCAACT 59.864 47.826 0.00 0.00 0.00 3.16
595 596 4.376146 GGAGTAGAGGATTGATGCAACTC 58.624 47.826 0.00 0.00 33.10 3.01
596 597 4.141846 GGAGTAGAGGATTGATGCAACTCA 60.142 45.833 9.38 0.00 35.04 3.41
597 598 4.764172 AGTAGAGGATTGATGCAACTCAC 58.236 43.478 0.00 0.00 0.00 3.51
598 599 2.625737 AGAGGATTGATGCAACTCACG 58.374 47.619 0.00 0.00 0.00 4.35
599 600 2.234661 AGAGGATTGATGCAACTCACGA 59.765 45.455 0.00 0.00 0.00 4.35
600 601 3.118482 AGAGGATTGATGCAACTCACGAT 60.118 43.478 0.00 0.00 0.00 3.73
601 602 4.100035 AGAGGATTGATGCAACTCACGATA 59.900 41.667 0.00 0.00 0.00 2.92
602 603 4.965814 AGGATTGATGCAACTCACGATAT 58.034 39.130 0.00 0.00 0.00 1.63
603 604 6.015095 AGAGGATTGATGCAACTCACGATATA 60.015 38.462 0.00 0.00 0.00 0.86
604 605 6.705302 AGGATTGATGCAACTCACGATATAT 58.295 36.000 0.00 0.00 0.00 0.86
605 606 7.164122 AGGATTGATGCAACTCACGATATATT 58.836 34.615 0.00 0.00 0.00 1.28
606 607 7.332926 AGGATTGATGCAACTCACGATATATTC 59.667 37.037 0.00 0.00 0.00 1.75
607 608 7.118245 GGATTGATGCAACTCACGATATATTCA 59.882 37.037 0.00 0.00 0.00 2.57
608 609 7.967890 TTGATGCAACTCACGATATATTCAT 57.032 32.000 0.00 0.00 0.00 2.57
609 610 7.586714 TGATGCAACTCACGATATATTCATC 57.413 36.000 0.00 0.00 0.00 2.92
621 622 6.759137 CGATATATTCATCGGATGCATATGC 58.241 40.000 24.24 21.09 43.20 3.14
658 659 7.809880 ATAGGTACAAAAGGAGTTTAGACCT 57.190 36.000 0.00 0.00 42.28 3.85
659 660 6.111669 AGGTACAAAAGGAGTTTAGACCTC 57.888 41.667 0.00 0.00 38.33 3.85
660 661 5.605488 AGGTACAAAAGGAGTTTAGACCTCA 59.395 40.000 0.00 0.00 38.33 3.86
661 662 6.100714 AGGTACAAAAGGAGTTTAGACCTCAA 59.899 38.462 0.00 0.00 38.33 3.02
662 663 6.204301 GGTACAAAAGGAGTTTAGACCTCAAC 59.796 42.308 0.00 0.00 35.25 3.18
663 664 6.002653 ACAAAAGGAGTTTAGACCTCAACT 57.997 37.500 0.00 0.00 35.88 3.16
664 665 7.133133 ACAAAAGGAGTTTAGACCTCAACTA 57.867 36.000 0.00 0.00 33.22 2.24
665 666 7.746703 ACAAAAGGAGTTTAGACCTCAACTAT 58.253 34.615 0.00 0.00 33.22 2.12
666 667 8.877195 ACAAAAGGAGTTTAGACCTCAACTATA 58.123 33.333 0.00 0.00 33.22 1.31
667 668 9.152595 CAAAAGGAGTTTAGACCTCAACTATAC 57.847 37.037 0.00 0.00 33.22 1.47
668 669 8.431910 AAAGGAGTTTAGACCTCAACTATACA 57.568 34.615 0.00 0.00 33.22 2.29
669 670 8.431910 AAGGAGTTTAGACCTCAACTATACAA 57.568 34.615 0.00 0.00 33.22 2.41
670 671 8.068892 AGGAGTTTAGACCTCAACTATACAAG 57.931 38.462 0.00 0.00 33.22 3.16
671 672 7.894364 AGGAGTTTAGACCTCAACTATACAAGA 59.106 37.037 0.00 0.00 33.22 3.02
672 673 8.529476 GGAGTTTAGACCTCAACTATACAAGAA 58.471 37.037 0.00 0.00 33.22 2.52
673 674 9.924650 GAGTTTAGACCTCAACTATACAAGAAA 57.075 33.333 0.00 0.00 33.22 2.52
674 675 9.930693 AGTTTAGACCTCAACTATACAAGAAAG 57.069 33.333 0.00 0.00 31.20 2.62
675 676 9.152595 GTTTAGACCTCAACTATACAAGAAAGG 57.847 37.037 0.00 0.00 0.00 3.11
676 677 8.660295 TTAGACCTCAACTATACAAGAAAGGA 57.340 34.615 0.00 0.00 0.00 3.36
677 678 7.176589 AGACCTCAACTATACAAGAAAGGAG 57.823 40.000 0.00 0.00 0.00 3.69
678 679 6.954684 AGACCTCAACTATACAAGAAAGGAGA 59.045 38.462 0.00 0.00 0.00 3.71
679 680 7.621683 AGACCTCAACTATACAAGAAAGGAGAT 59.378 37.037 0.00 0.00 0.00 2.75
680 681 8.840200 ACCTCAACTATACAAGAAAGGAGATA 57.160 34.615 0.00 0.00 0.00 1.98
681 682 8.919145 ACCTCAACTATACAAGAAAGGAGATAG 58.081 37.037 0.00 0.00 0.00 2.08
682 683 9.137459 CCTCAACTATACAAGAAAGGAGATAGA 57.863 37.037 0.00 0.00 0.00 1.98
683 684 9.959749 CTCAACTATACAAGAAAGGAGATAGAC 57.040 37.037 0.00 0.00 0.00 2.59
684 685 9.702253 TCAACTATACAAGAAAGGAGATAGACT 57.298 33.333 0.00 0.00 0.00 3.24
687 688 9.930158 ACTATACAAGAAAGGAGATAGACTTCT 57.070 33.333 0.00 0.00 35.67 2.85
690 691 7.309770 ACAAGAAAGGAGATAGACTTCTTGT 57.690 36.000 18.12 18.12 43.06 3.16
691 692 8.423906 ACAAGAAAGGAGATAGACTTCTTGTA 57.576 34.615 20.94 0.00 43.06 2.41
692 693 8.308207 ACAAGAAAGGAGATAGACTTCTTGTAC 58.692 37.037 20.94 0.00 43.06 2.90
693 694 8.307483 CAAGAAAGGAGATAGACTTCTTGTACA 58.693 37.037 12.51 0.00 43.06 2.90
694 695 8.423906 AGAAAGGAGATAGACTTCTTGTACAA 57.576 34.615 8.28 8.28 43.06 2.41
695 696 8.527810 AGAAAGGAGATAGACTTCTTGTACAAG 58.472 37.037 26.60 26.60 43.06 3.16
696 697 8.423906 AAAGGAGATAGACTTCTTGTACAAGA 57.576 34.615 30.07 30.07 43.06 3.02
707 708 5.168526 TCTTGTACAAGAAACACACATGC 57.831 39.130 31.26 0.00 43.79 4.06
708 709 4.637977 TCTTGTACAAGAAACACACATGCA 59.362 37.500 31.26 8.09 43.79 3.96
709 710 4.972514 TGTACAAGAAACACACATGCAA 57.027 36.364 0.00 0.00 0.00 4.08
710 711 5.512753 TGTACAAGAAACACACATGCAAT 57.487 34.783 0.00 0.00 0.00 3.56
711 712 6.625873 TGTACAAGAAACACACATGCAATA 57.374 33.333 0.00 0.00 0.00 1.90
712 713 7.213216 TGTACAAGAAACACACATGCAATAT 57.787 32.000 0.00 0.00 0.00 1.28
713 714 8.329203 TGTACAAGAAACACACATGCAATATA 57.671 30.769 0.00 0.00 0.00 0.86
714 715 8.233868 TGTACAAGAAACACACATGCAATATAC 58.766 33.333 0.00 0.00 0.00 1.47
715 716 7.213216 ACAAGAAACACACATGCAATATACA 57.787 32.000 0.00 0.00 0.00 2.29
716 717 7.829725 ACAAGAAACACACATGCAATATACAT 58.170 30.769 0.00 0.00 0.00 2.29
717 718 7.970061 ACAAGAAACACACATGCAATATACATC 59.030 33.333 0.00 0.00 0.00 3.06
718 719 7.870509 AGAAACACACATGCAATATACATCT 57.129 32.000 0.00 0.00 0.00 2.90
719 720 7.923888 AGAAACACACATGCAATATACATCTC 58.076 34.615 0.00 0.00 0.00 2.75
720 721 5.912360 ACACACATGCAATATACATCTCG 57.088 39.130 0.00 0.00 0.00 4.04
721 722 5.600696 ACACACATGCAATATACATCTCGA 58.399 37.500 0.00 0.00 0.00 4.04
722 723 5.463392 ACACACATGCAATATACATCTCGAC 59.537 40.000 0.00 0.00 0.00 4.20
723 724 5.463061 CACACATGCAATATACATCTCGACA 59.537 40.000 0.00 0.00 0.00 4.35
724 725 6.018832 CACACATGCAATATACATCTCGACAA 60.019 38.462 0.00 0.00 0.00 3.18
725 726 6.201615 ACACATGCAATATACATCTCGACAAG 59.798 38.462 0.00 0.00 0.00 3.16
726 727 5.698089 ACATGCAATATACATCTCGACAAGG 59.302 40.000 0.00 0.00 0.00 3.61
727 728 4.058124 TGCAATATACATCTCGACAAGGC 58.942 43.478 0.00 0.00 0.00 4.35
728 729 3.433615 GCAATATACATCTCGACAAGGCC 59.566 47.826 0.00 0.00 0.00 5.19
729 730 3.963428 ATATACATCTCGACAAGGCCC 57.037 47.619 0.00 0.00 0.00 5.80
730 731 1.496060 ATACATCTCGACAAGGCCCA 58.504 50.000 0.00 0.00 0.00 5.36
731 732 1.271856 TACATCTCGACAAGGCCCAA 58.728 50.000 0.00 0.00 0.00 4.12
732 733 0.321653 ACATCTCGACAAGGCCCAAC 60.322 55.000 0.00 0.00 0.00 3.77
733 734 0.036010 CATCTCGACAAGGCCCAACT 60.036 55.000 0.00 0.00 0.00 3.16
734 735 0.250513 ATCTCGACAAGGCCCAACTC 59.749 55.000 0.00 0.00 0.00 3.01
735 736 1.738099 CTCGACAAGGCCCAACTCG 60.738 63.158 0.00 0.59 0.00 4.18
736 737 2.154798 CTCGACAAGGCCCAACTCGA 62.155 60.000 0.00 5.65 32.69 4.04
737 738 1.738099 CGACAAGGCCCAACTCGAG 60.738 63.158 11.84 11.84 0.00 4.04
738 739 2.032681 ACAAGGCCCAACTCGAGC 59.967 61.111 13.61 0.00 0.00 5.03
742 743 4.329545 GGCCCAACTCGAGCCACA 62.330 66.667 13.61 0.00 46.34 4.17
743 744 3.050275 GCCCAACTCGAGCCACAC 61.050 66.667 13.61 0.00 0.00 3.82
744 745 2.743718 CCCAACTCGAGCCACACT 59.256 61.111 13.61 0.00 0.00 3.55
745 746 1.669115 CCCAACTCGAGCCACACTG 60.669 63.158 13.61 0.49 0.00 3.66
746 747 1.367471 CCAACTCGAGCCACACTGA 59.633 57.895 13.61 0.00 0.00 3.41
747 748 0.036952 CCAACTCGAGCCACACTGAT 60.037 55.000 13.61 0.00 0.00 2.90
748 749 1.354040 CAACTCGAGCCACACTGATC 58.646 55.000 13.61 0.00 0.00 2.92
749 750 1.067283 CAACTCGAGCCACACTGATCT 60.067 52.381 13.61 0.00 0.00 2.75
750 751 0.529833 ACTCGAGCCACACTGATCTG 59.470 55.000 13.61 0.00 0.00 2.90
751 752 0.179116 CTCGAGCCACACTGATCTGG 60.179 60.000 0.00 0.00 0.00 3.86
755 756 4.509756 CCACACTGATCTGGCTCG 57.490 61.111 4.49 0.00 0.00 5.03
756 757 1.812922 CCACACTGATCTGGCTCGC 60.813 63.158 4.49 0.00 0.00 5.03
757 758 1.217511 CACACTGATCTGGCTCGCT 59.782 57.895 4.49 0.00 0.00 4.93
758 759 0.390866 CACACTGATCTGGCTCGCTT 60.391 55.000 4.49 0.00 0.00 4.68
759 760 1.134995 CACACTGATCTGGCTCGCTTA 60.135 52.381 4.49 0.00 0.00 3.09
760 761 1.134965 ACACTGATCTGGCTCGCTTAC 60.135 52.381 4.49 0.00 0.00 2.34
761 762 1.134995 CACTGATCTGGCTCGCTTACA 60.135 52.381 4.49 0.00 0.00 2.41
762 763 1.759445 ACTGATCTGGCTCGCTTACAT 59.241 47.619 4.49 0.00 0.00 2.29
763 764 2.223923 ACTGATCTGGCTCGCTTACATC 60.224 50.000 4.49 0.00 0.00 3.06
764 765 1.069204 TGATCTGGCTCGCTTACATCC 59.931 52.381 0.00 0.00 0.00 3.51
765 766 0.032678 ATCTGGCTCGCTTACATCCG 59.967 55.000 0.00 0.00 0.00 4.18
766 767 1.035385 TCTGGCTCGCTTACATCCGA 61.035 55.000 0.00 0.00 0.00 4.55
767 768 0.179111 CTGGCTCGCTTACATCCGAA 60.179 55.000 0.00 0.00 32.56 4.30
768 769 0.459585 TGGCTCGCTTACATCCGAAC 60.460 55.000 0.00 0.00 32.56 3.95
769 770 0.459585 GGCTCGCTTACATCCGAACA 60.460 55.000 0.00 0.00 32.56 3.18
770 771 1.355971 GCTCGCTTACATCCGAACAA 58.644 50.000 0.00 0.00 32.56 2.83
771 772 1.324736 GCTCGCTTACATCCGAACAAG 59.675 52.381 0.00 0.00 32.56 3.16
772 773 1.927174 CTCGCTTACATCCGAACAAGG 59.073 52.381 0.00 0.00 32.56 3.61
773 774 0.373716 CGCTTACATCCGAACAAGGC 59.626 55.000 0.00 0.00 0.00 4.35
774 775 0.373716 GCTTACATCCGAACAAGGCG 59.626 55.000 0.00 0.00 0.00 5.52
775 776 1.722011 CTTACATCCGAACAAGGCGT 58.278 50.000 0.00 0.00 0.00 5.68
776 777 1.659098 CTTACATCCGAACAAGGCGTC 59.341 52.381 0.00 0.00 0.00 5.19
777 778 0.892755 TACATCCGAACAAGGCGTCT 59.107 50.000 0.00 0.00 0.00 4.18
778 779 0.389948 ACATCCGAACAAGGCGTCTC 60.390 55.000 0.00 0.00 0.00 3.36
779 780 1.153823 ATCCGAACAAGGCGTCTCG 60.154 57.895 0.00 0.00 0.00 4.04
780 781 1.874345 ATCCGAACAAGGCGTCTCGT 61.874 55.000 0.00 0.00 0.00 4.18
781 782 1.210931 CCGAACAAGGCGTCTCGTA 59.789 57.895 0.00 0.00 0.00 3.43
784 785 1.582502 CGAACAAGGCGTCTCGTATTC 59.417 52.381 0.00 0.00 0.00 1.75
791 792 0.248949 GCGTCTCGTATTCCCCTCAC 60.249 60.000 0.00 0.00 0.00 3.51
973 978 1.612199 GGCTCCAACAACACCCGATAA 60.612 52.381 0.00 0.00 0.00 1.75
983 988 4.468510 ACAACACCCGATAACTTCTCCATA 59.531 41.667 0.00 0.00 0.00 2.74
985 990 4.543689 ACACCCGATAACTTCTCCATAGA 58.456 43.478 0.00 0.00 0.00 1.98
988 993 5.768662 CACCCGATAACTTCTCCATAGAGTA 59.231 44.000 0.00 0.00 41.26 2.59
993 998 6.570764 CGATAACTTCTCCATAGAGTAAGGGC 60.571 46.154 5.74 0.00 41.26 5.19
1010 1015 0.391661 GGCTTCGAGATGGCTTCACA 60.392 55.000 3.03 0.00 0.00 3.58
1011 1016 1.661341 GCTTCGAGATGGCTTCACAT 58.339 50.000 3.03 0.00 0.00 3.21
1014 1019 3.464907 CTTCGAGATGGCTTCACATGAT 58.535 45.455 0.00 0.00 0.00 2.45
1023 1028 1.139058 GCTTCACATGATACTCCCGGT 59.861 52.381 0.00 0.00 0.00 5.28
1231 1236 1.344953 TATGAGGGCAGCGTGGGATT 61.345 55.000 0.00 0.00 0.00 3.01
1370 1375 2.482490 CGGTCATCCTTAAACCCTACGG 60.482 54.545 0.00 0.00 0.00 4.02
1371 1376 2.558378 GTCATCCTTAAACCCTACGGC 58.442 52.381 0.00 0.00 0.00 5.68
1398 1403 0.321564 CAAAGCCATCGACTGTCCCA 60.322 55.000 1.55 0.00 0.00 4.37
1734 1740 7.543520 CCATCAGCTTTAATTTTCAAGAACCTC 59.456 37.037 0.00 0.00 0.00 3.85
1749 1755 2.254152 ACCTCTGAGCTTCATGGGTA 57.746 50.000 0.00 0.00 32.25 3.69
1873 1892 3.077359 GTGAGGATAACAGCAAAGCAGT 58.923 45.455 0.00 0.00 0.00 4.40
1906 1925 1.296392 CTGACATGGGTGAAGCCGA 59.704 57.895 0.00 0.00 38.44 5.54
2067 2086 3.838244 AGAGAAACAAGCACACACCTA 57.162 42.857 0.00 0.00 0.00 3.08
2068 2087 4.150897 AGAGAAACAAGCACACACCTAA 57.849 40.909 0.00 0.00 0.00 2.69
2222 2254 0.436531 CGCGACAGTGAAAGAGCTTC 59.563 55.000 0.00 0.00 34.31 3.86
2447 2485 5.687770 TGACGTGATTGTTGATGATTTGT 57.312 34.783 0.00 0.00 0.00 2.83
2454 2492 7.566709 GTGATTGTTGATGATTTGTTTGGAAC 58.433 34.615 0.00 0.00 0.00 3.62
2595 2633 8.906867 AGATTTTAATGAGGTGATACATGGTTG 58.093 33.333 0.00 0.00 0.00 3.77
2608 2646 3.765381 ACATGGTTGTGAACATGATGGA 58.235 40.909 11.08 0.00 45.55 3.41
2670 2708 1.469079 CGCACTCGATACATGTGGTCA 60.469 52.381 9.11 0.00 38.10 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.301346 CGGAGGCCAATTTCTATGCTT 58.699 47.619 5.01 0.00 0.00 3.91
1 2 1.212935 ACGGAGGCCAATTTCTATGCT 59.787 47.619 5.01 0.00 0.00 3.79
2 3 1.334869 CACGGAGGCCAATTTCTATGC 59.665 52.381 5.01 0.00 0.00 3.14
5 6 1.626321 TCACACGGAGGCCAATTTCTA 59.374 47.619 5.01 0.00 0.00 2.10
6 7 0.400213 TCACACGGAGGCCAATTTCT 59.600 50.000 5.01 0.00 0.00 2.52
7 8 0.804989 CTCACACGGAGGCCAATTTC 59.195 55.000 5.01 0.00 40.13 2.17
8 9 0.400213 TCTCACACGGAGGCCAATTT 59.600 50.000 5.01 0.00 44.19 1.82
9 10 0.400213 TTCTCACACGGAGGCCAATT 59.600 50.000 5.01 0.00 44.19 2.32
10 11 0.400213 TTTCTCACACGGAGGCCAAT 59.600 50.000 5.01 0.00 44.19 3.16
11 12 0.250295 CTTTCTCACACGGAGGCCAA 60.250 55.000 5.01 0.00 44.19 4.52
12 13 1.371183 CTTTCTCACACGGAGGCCA 59.629 57.895 5.01 0.00 44.19 5.36
13 14 2.035442 GCTTTCTCACACGGAGGCC 61.035 63.158 0.00 0.00 44.19 5.19
14 15 0.603975 AAGCTTTCTCACACGGAGGC 60.604 55.000 0.00 0.00 44.19 4.70
15 16 1.151668 CAAGCTTTCTCACACGGAGG 58.848 55.000 0.00 0.00 44.19 4.30
16 17 2.154854 TCAAGCTTTCTCACACGGAG 57.845 50.000 0.00 0.00 45.49 4.63
17 18 2.037121 TGATCAAGCTTTCTCACACGGA 59.963 45.455 0.00 0.00 0.00 4.69
18 19 2.414481 CTGATCAAGCTTTCTCACACGG 59.586 50.000 0.00 0.00 0.00 4.94
19 20 2.414481 CCTGATCAAGCTTTCTCACACG 59.586 50.000 0.00 0.00 0.00 4.49
20 21 3.434984 GTCCTGATCAAGCTTTCTCACAC 59.565 47.826 0.00 0.00 0.00 3.82
21 22 3.668447 GTCCTGATCAAGCTTTCTCACA 58.332 45.455 0.00 0.00 0.00 3.58
22 23 2.670414 CGTCCTGATCAAGCTTTCTCAC 59.330 50.000 0.00 0.00 0.00 3.51
23 24 2.932622 GCGTCCTGATCAAGCTTTCTCA 60.933 50.000 0.00 1.60 0.00 3.27
24 25 1.663135 GCGTCCTGATCAAGCTTTCTC 59.337 52.381 0.00 0.00 0.00 2.87
25 26 1.731720 GCGTCCTGATCAAGCTTTCT 58.268 50.000 0.00 0.00 0.00 2.52
26 27 0.371645 CGCGTCCTGATCAAGCTTTC 59.628 55.000 0.00 0.00 0.00 2.62
27 28 0.037326 TCGCGTCCTGATCAAGCTTT 60.037 50.000 5.77 0.00 0.00 3.51
28 29 0.176680 ATCGCGTCCTGATCAAGCTT 59.823 50.000 5.77 0.00 0.00 3.74
29 30 0.249238 GATCGCGTCCTGATCAAGCT 60.249 55.000 5.77 0.00 41.48 3.74
30 31 1.543941 CGATCGCGTCCTGATCAAGC 61.544 60.000 5.77 0.00 41.85 4.01
31 32 0.029433 TCGATCGCGTCCTGATCAAG 59.971 55.000 11.09 0.00 41.85 3.02
32 33 0.454196 TTCGATCGCGTCCTGATCAA 59.546 50.000 11.09 0.00 41.85 2.57
33 34 0.029433 CTTCGATCGCGTCCTGATCA 59.971 55.000 11.09 0.00 41.85 2.92
34 35 0.308068 TCTTCGATCGCGTCCTGATC 59.692 55.000 11.09 0.00 39.07 2.92
35 36 0.955178 ATCTTCGATCGCGTCCTGAT 59.045 50.000 11.09 4.62 38.98 2.90
36 37 0.308068 GATCTTCGATCGCGTCCTGA 59.692 55.000 11.09 2.40 38.98 3.86
37 38 0.994241 CGATCTTCGATCGCGTCCTG 60.994 60.000 11.09 0.00 43.74 3.86
38 39 1.158484 TCGATCTTCGATCGCGTCCT 61.158 55.000 18.46 0.00 44.82 3.85
39 40 1.278937 TCGATCTTCGATCGCGTCC 59.721 57.895 18.46 0.00 44.82 4.79
40 41 4.895333 TCGATCTTCGATCGCGTC 57.105 55.556 18.46 1.94 44.82 5.19
48 49 0.633733 CCGTGACGTTTCGATCTTCG 59.366 55.000 3.64 0.00 42.10 3.79
49 50 1.973138 TCCGTGACGTTTCGATCTTC 58.027 50.000 3.64 0.00 0.00 2.87
50 51 2.259618 CATCCGTGACGTTTCGATCTT 58.740 47.619 3.64 0.00 0.00 2.40
51 52 1.201647 ACATCCGTGACGTTTCGATCT 59.798 47.619 3.64 0.00 0.00 2.75
52 53 1.625616 ACATCCGTGACGTTTCGATC 58.374 50.000 3.64 0.00 0.00 3.69
53 54 2.523015 GTACATCCGTGACGTTTCGAT 58.477 47.619 3.64 0.00 0.00 3.59
54 55 1.725611 CGTACATCCGTGACGTTTCGA 60.726 52.381 3.64 0.00 0.00 3.71
55 56 0.631745 CGTACATCCGTGACGTTTCG 59.368 55.000 3.64 0.00 0.00 3.46
56 57 0.364515 GCGTACATCCGTGACGTTTC 59.635 55.000 3.64 0.00 38.80 2.78
57 58 1.010419 GGCGTACATCCGTGACGTTT 61.010 55.000 3.64 0.00 38.80 3.60
58 59 1.444895 GGCGTACATCCGTGACGTT 60.445 57.895 3.64 0.00 38.80 3.99
59 60 2.180017 GGCGTACATCCGTGACGT 59.820 61.111 3.64 0.00 38.80 4.34
60 61 2.947621 CGGCGTACATCCGTGACG 60.948 66.667 13.62 0.00 41.85 4.35
61 62 1.585521 CTCGGCGTACATCCGTGAC 60.586 63.158 19.13 0.00 46.49 3.67
62 63 1.985447 GACTCGGCGTACATCCGTGA 61.985 60.000 23.61 8.13 46.49 4.35
63 64 1.585521 GACTCGGCGTACATCCGTG 60.586 63.158 19.13 18.68 46.49 4.94
64 65 2.796651 GACTCGGCGTACATCCGT 59.203 61.111 19.13 5.23 46.49 4.69
66 67 2.025727 CCGACTCGGCGTACATCC 59.974 66.667 6.85 0.00 41.17 3.51
67 68 2.025727 CCCGACTCGGCGTACATC 59.974 66.667 12.37 0.00 46.86 3.06
68 69 3.524606 CCCCGACTCGGCGTACAT 61.525 66.667 12.37 0.00 46.86 2.29
69 70 4.720902 TCCCCGACTCGGCGTACA 62.721 66.667 12.37 0.00 46.86 2.90
70 71 3.885521 CTCCCCGACTCGGCGTAC 61.886 72.222 12.37 0.00 46.86 3.67
71 72 4.100084 TCTCCCCGACTCGGCGTA 62.100 66.667 12.37 0.00 46.86 4.42
74 75 2.754658 TTCTCTCCCCGACTCGGC 60.755 66.667 12.37 0.00 46.86 5.54
76 77 2.762234 CCGTTCTCTCCCCGACTCG 61.762 68.421 0.00 0.00 0.00 4.18
77 78 2.416432 CCCGTTCTCTCCCCGACTC 61.416 68.421 0.00 0.00 0.00 3.36
78 79 2.362632 CCCGTTCTCTCCCCGACT 60.363 66.667 0.00 0.00 0.00 4.18
79 80 4.144703 GCCCGTTCTCTCCCCGAC 62.145 72.222 0.00 0.00 0.00 4.79
82 83 3.009714 AAGGCCCGTTCTCTCCCC 61.010 66.667 0.00 0.00 0.00 4.81
83 84 2.269241 CAAGGCCCGTTCTCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
84 85 2.245438 CTCCAAGGCCCGTTCTCTCC 62.245 65.000 0.00 0.00 0.00 3.71
85 86 1.219393 CTCCAAGGCCCGTTCTCTC 59.781 63.158 0.00 0.00 0.00 3.20
86 87 2.294078 CCTCCAAGGCCCGTTCTCT 61.294 63.158 0.00 0.00 0.00 3.10
87 88 2.245438 CTCCTCCAAGGCCCGTTCTC 62.245 65.000 0.00 0.00 34.61 2.87
88 89 2.203938 TCCTCCAAGGCCCGTTCT 60.204 61.111 0.00 0.00 34.61 3.01
89 90 2.269241 CTCCTCCAAGGCCCGTTC 59.731 66.667 0.00 0.00 34.61 3.95
90 91 3.330720 CCTCCTCCAAGGCCCGTT 61.331 66.667 0.00 0.00 34.61 4.44
91 92 4.332543 TCCTCCTCCAAGGCCCGT 62.333 66.667 0.00 0.00 36.29 5.28
92 93 3.474570 CTCCTCCTCCAAGGCCCG 61.475 72.222 0.00 0.00 36.29 6.13
93 94 3.093172 CCTCCTCCTCCAAGGCCC 61.093 72.222 0.00 0.00 36.29 5.80
96 97 1.990060 TTCGCCTCCTCCTCCAAGG 60.990 63.158 0.00 0.00 37.81 3.61
97 98 1.219393 GTTCGCCTCCTCCTCCAAG 59.781 63.158 0.00 0.00 0.00 3.61
98 99 2.646175 CGTTCGCCTCCTCCTCCAA 61.646 63.158 0.00 0.00 0.00 3.53
99 100 3.068691 CGTTCGCCTCCTCCTCCA 61.069 66.667 0.00 0.00 0.00 3.86
100 101 3.839432 CCGTTCGCCTCCTCCTCC 61.839 72.222 0.00 0.00 0.00 4.30
101 102 3.839432 CCCGTTCGCCTCCTCCTC 61.839 72.222 0.00 0.00 0.00 3.71
102 103 4.698625 ACCCGTTCGCCTCCTCCT 62.699 66.667 0.00 0.00 0.00 3.69
103 104 3.703127 AACCCGTTCGCCTCCTCC 61.703 66.667 0.00 0.00 0.00 4.30
104 105 2.434359 CAACCCGTTCGCCTCCTC 60.434 66.667 0.00 0.00 0.00 3.71
105 106 4.699522 GCAACCCGTTCGCCTCCT 62.700 66.667 0.00 0.00 0.00 3.69
127 128 4.394712 CACTCCACCCGCTCCCAC 62.395 72.222 0.00 0.00 0.00 4.61
128 129 4.631740 TCACTCCACCCGCTCCCA 62.632 66.667 0.00 0.00 0.00 4.37
129 130 3.775654 CTCACTCCACCCGCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
130 131 2.680352 TCTCACTCCACCCGCTCC 60.680 66.667 0.00 0.00 0.00 4.70
131 132 1.040339 ATCTCTCACTCCACCCGCTC 61.040 60.000 0.00 0.00 0.00 5.03
132 133 1.000993 ATCTCTCACTCCACCCGCT 59.999 57.895 0.00 0.00 0.00 5.52
133 134 1.142748 CATCTCTCACTCCACCCGC 59.857 63.158 0.00 0.00 0.00 6.13
134 135 1.819229 CCATCTCTCACTCCACCCG 59.181 63.158 0.00 0.00 0.00 5.28
135 136 1.267574 TGCCATCTCTCACTCCACCC 61.268 60.000 0.00 0.00 0.00 4.61
136 137 0.177604 CTGCCATCTCTCACTCCACC 59.822 60.000 0.00 0.00 0.00 4.61
137 138 0.461693 GCTGCCATCTCTCACTCCAC 60.462 60.000 0.00 0.00 0.00 4.02
138 139 1.903294 GCTGCCATCTCTCACTCCA 59.097 57.895 0.00 0.00 0.00 3.86
139 140 1.227205 CGCTGCCATCTCTCACTCC 60.227 63.158 0.00 0.00 0.00 3.85
140 141 1.227205 CCGCTGCCATCTCTCACTC 60.227 63.158 0.00 0.00 0.00 3.51
141 142 2.898738 CCGCTGCCATCTCTCACT 59.101 61.111 0.00 0.00 0.00 3.41
142 143 2.894387 GCCGCTGCCATCTCTCAC 60.894 66.667 0.00 0.00 0.00 3.51
143 144 3.381333 CTGCCGCTGCCATCTCTCA 62.381 63.158 0.00 0.00 36.33 3.27
144 145 2.588314 CTGCCGCTGCCATCTCTC 60.588 66.667 0.00 0.00 36.33 3.20
145 146 4.853050 GCTGCCGCTGCCATCTCT 62.853 66.667 10.97 0.00 36.33 3.10
175 176 4.397832 TAAACCTCACCCGCGCCC 62.398 66.667 0.00 0.00 0.00 6.13
176 177 2.818274 CTAAACCTCACCCGCGCC 60.818 66.667 0.00 0.00 0.00 6.53
177 178 2.818274 CCTAAACCTCACCCGCGC 60.818 66.667 0.00 0.00 0.00 6.86
178 179 2.125269 CCCTAAACCTCACCCGCG 60.125 66.667 0.00 0.00 0.00 6.46
179 180 0.251033 AAACCCTAAACCTCACCCGC 60.251 55.000 0.00 0.00 0.00 6.13
180 181 1.530323 CAAACCCTAAACCTCACCCG 58.470 55.000 0.00 0.00 0.00 5.28
181 182 1.426215 TCCAAACCCTAAACCTCACCC 59.574 52.381 0.00 0.00 0.00 4.61
182 183 2.554564 CCTCCAAACCCTAAACCTCACC 60.555 54.545 0.00 0.00 0.00 4.02
183 184 2.554564 CCCTCCAAACCCTAAACCTCAC 60.555 54.545 0.00 0.00 0.00 3.51
184 185 1.708551 CCCTCCAAACCCTAAACCTCA 59.291 52.381 0.00 0.00 0.00 3.86
185 186 1.005569 CCCCTCCAAACCCTAAACCTC 59.994 57.143 0.00 0.00 0.00 3.85
186 187 1.081481 CCCCTCCAAACCCTAAACCT 58.919 55.000 0.00 0.00 0.00 3.50
187 188 1.005569 CTCCCCTCCAAACCCTAAACC 59.994 57.143 0.00 0.00 0.00 3.27
188 189 1.616187 GCTCCCCTCCAAACCCTAAAC 60.616 57.143 0.00 0.00 0.00 2.01
189 190 0.702316 GCTCCCCTCCAAACCCTAAA 59.298 55.000 0.00 0.00 0.00 1.85
190 191 1.559065 CGCTCCCCTCCAAACCCTAA 61.559 60.000 0.00 0.00 0.00 2.69
191 192 1.993391 CGCTCCCCTCCAAACCCTA 60.993 63.158 0.00 0.00 0.00 3.53
192 193 3.330720 CGCTCCCCTCCAAACCCT 61.331 66.667 0.00 0.00 0.00 4.34
193 194 4.426313 CCGCTCCCCTCCAAACCC 62.426 72.222 0.00 0.00 0.00 4.11
211 212 4.441695 TGCTCTTCTCCAGCCGCG 62.442 66.667 0.00 0.00 35.89 6.46
212 213 2.511145 CTGCTCTTCTCCAGCCGC 60.511 66.667 0.00 0.00 35.89 6.53
213 214 2.511145 GCTGCTCTTCTCCAGCCG 60.511 66.667 1.38 0.00 46.59 5.52
216 217 1.810441 CGCTGCTGCTCTTCTCCAG 60.810 63.158 14.03 0.00 36.97 3.86
217 218 2.263852 CGCTGCTGCTCTTCTCCA 59.736 61.111 14.03 0.00 36.97 3.86
218 219 3.194308 GCGCTGCTGCTCTTCTCC 61.194 66.667 14.03 0.00 36.97 3.71
219 220 3.552839 CGCGCTGCTGCTCTTCTC 61.553 66.667 14.03 0.00 36.97 2.87
220 221 4.061346 TCGCGCTGCTGCTCTTCT 62.061 61.111 14.03 0.00 36.97 2.85
221 222 3.847709 GTCGCGCTGCTGCTCTTC 61.848 66.667 14.03 0.00 36.97 2.87
235 236 2.809601 CTCGCAGAAACCCCGTCG 60.810 66.667 0.00 0.00 34.09 5.12
236 237 2.434359 CCTCGCAGAAACCCCGTC 60.434 66.667 0.00 0.00 34.09 4.79
237 238 4.016706 CCCTCGCAGAAACCCCGT 62.017 66.667 0.00 0.00 34.09 5.28
238 239 3.665675 CTCCCTCGCAGAAACCCCG 62.666 68.421 0.00 0.00 34.09 5.73
239 240 2.269241 CTCCCTCGCAGAAACCCC 59.731 66.667 0.00 0.00 34.09 4.95
240 241 2.269241 CCTCCCTCGCAGAAACCC 59.731 66.667 0.00 0.00 34.09 4.11
241 242 2.436824 GCCTCCCTCGCAGAAACC 60.437 66.667 0.00 0.00 34.09 3.27
242 243 2.579684 ATCGCCTCCCTCGCAGAAAC 62.580 60.000 0.00 0.00 34.09 2.78
243 244 2.359169 ATCGCCTCCCTCGCAGAAA 61.359 57.895 0.00 0.00 34.09 2.52
244 245 2.759973 ATCGCCTCCCTCGCAGAA 60.760 61.111 0.00 0.00 34.09 3.02
245 246 3.531207 CATCGCCTCCCTCGCAGA 61.531 66.667 0.00 0.00 0.00 4.26
258 259 3.032609 CCTCTTAGCCGCGCATCG 61.033 66.667 8.75 0.00 38.08 3.84
259 260 1.663074 CTCCTCTTAGCCGCGCATC 60.663 63.158 8.75 0.00 0.00 3.91
260 261 2.419198 CTCCTCTTAGCCGCGCAT 59.581 61.111 8.75 0.00 0.00 4.73
261 262 3.838271 CCTCCTCTTAGCCGCGCA 61.838 66.667 8.75 0.00 0.00 6.09
262 263 4.593864 CCCTCCTCTTAGCCGCGC 62.594 72.222 0.00 0.00 0.00 6.86
263 264 2.833582 TCCCTCCTCTTAGCCGCG 60.834 66.667 0.00 0.00 0.00 6.46
264 265 3.133946 CTCCCTCCTCTTAGCCGC 58.866 66.667 0.00 0.00 0.00 6.53
265 266 2.851071 CGCTCCCTCCTCTTAGCCG 61.851 68.421 0.00 0.00 0.00 5.52
266 267 2.503382 CCGCTCCCTCCTCTTAGCC 61.503 68.421 0.00 0.00 0.00 3.93
267 268 3.133946 CCGCTCCCTCCTCTTAGC 58.866 66.667 0.00 0.00 0.00 3.09
268 269 2.851071 CGCCGCTCCCTCCTCTTAG 61.851 68.421 0.00 0.00 0.00 2.18
269 270 2.833582 CGCCGCTCCCTCCTCTTA 60.834 66.667 0.00 0.00 0.00 2.10
283 284 4.096003 TTACCCTCCTGCTGCGCC 62.096 66.667 4.18 0.00 0.00 6.53
284 285 2.512515 CTTACCCTCCTGCTGCGC 60.513 66.667 0.00 0.00 0.00 6.09
285 286 2.512515 GCTTACCCTCCTGCTGCG 60.513 66.667 0.00 0.00 0.00 5.18
286 287 2.512515 CGCTTACCCTCCTGCTGC 60.513 66.667 0.00 0.00 0.00 5.25
287 288 1.448540 CACGCTTACCCTCCTGCTG 60.449 63.158 0.00 0.00 0.00 4.41
288 289 1.608717 CTCACGCTTACCCTCCTGCT 61.609 60.000 0.00 0.00 0.00 4.24
289 290 1.153549 CTCACGCTTACCCTCCTGC 60.154 63.158 0.00 0.00 0.00 4.85
290 291 1.258445 ACCTCACGCTTACCCTCCTG 61.258 60.000 0.00 0.00 0.00 3.86
291 292 1.078710 ACCTCACGCTTACCCTCCT 59.921 57.895 0.00 0.00 0.00 3.69
292 293 1.218316 CACCTCACGCTTACCCTCC 59.782 63.158 0.00 0.00 0.00 4.30
293 294 1.448013 GCACCTCACGCTTACCCTC 60.448 63.158 0.00 0.00 0.00 4.30
294 295 2.663196 GCACCTCACGCTTACCCT 59.337 61.111 0.00 0.00 0.00 4.34
295 296 2.813908 CGCACCTCACGCTTACCC 60.814 66.667 0.00 0.00 0.00 3.69
296 297 2.813908 CCGCACCTCACGCTTACC 60.814 66.667 0.00 0.00 0.00 2.85
297 298 3.488090 GCCGCACCTCACGCTTAC 61.488 66.667 0.00 0.00 0.00 2.34
326 327 4.778143 CTTTAGCGCCGCCACCCT 62.778 66.667 4.98 0.00 0.00 4.34
329 330 4.770874 TCCCTTTAGCGCCGCCAC 62.771 66.667 4.98 0.00 0.00 5.01
330 331 4.467084 CTCCCTTTAGCGCCGCCA 62.467 66.667 4.98 0.00 0.00 5.69
354 355 4.570663 ACCGATCTACGCTGCCGC 62.571 66.667 0.00 0.00 41.07 6.53
355 356 2.655364 CACCGATCTACGCTGCCG 60.655 66.667 0.00 0.00 41.07 5.69
356 357 2.279517 CCACCGATCTACGCTGCC 60.280 66.667 0.00 0.00 41.07 4.85
357 358 2.962253 GCCACCGATCTACGCTGC 60.962 66.667 0.00 0.00 41.07 5.25
358 359 1.878522 GTGCCACCGATCTACGCTG 60.879 63.158 0.00 0.00 41.07 5.18
359 360 2.494918 GTGCCACCGATCTACGCT 59.505 61.111 0.00 0.00 41.07 5.07
360 361 2.954868 CGTGCCACCGATCTACGC 60.955 66.667 0.00 0.00 41.07 4.42
361 362 2.954868 GCGTGCCACCGATCTACG 60.955 66.667 0.00 0.00 42.18 3.51
362 363 2.954868 CGCGTGCCACCGATCTAC 60.955 66.667 0.00 0.00 0.00 2.59
363 364 4.201679 CCGCGTGCCACCGATCTA 62.202 66.667 4.92 0.00 0.00 1.98
372 373 4.388499 TTCCTTCCTCCGCGTGCC 62.388 66.667 4.92 0.00 0.00 5.01
373 374 2.815647 CTTCCTTCCTCCGCGTGC 60.816 66.667 4.92 0.00 0.00 5.34
374 375 2.125512 CCTTCCTTCCTCCGCGTG 60.126 66.667 4.92 0.00 0.00 5.34
375 376 2.603776 ACCTTCCTTCCTCCGCGT 60.604 61.111 4.92 0.00 0.00 6.01
376 377 2.125512 CACCTTCCTTCCTCCGCG 60.126 66.667 0.00 0.00 0.00 6.46
377 378 2.436824 GCACCTTCCTTCCTCCGC 60.437 66.667 0.00 0.00 0.00 5.54
378 379 2.125512 CGCACCTTCCTTCCTCCG 60.126 66.667 0.00 0.00 0.00 4.63
379 380 2.269241 CCGCACCTTCCTTCCTCC 59.731 66.667 0.00 0.00 0.00 4.30
380 381 2.436824 GCCGCACCTTCCTTCCTC 60.437 66.667 0.00 0.00 0.00 3.71
381 382 4.394712 CGCCGCACCTTCCTTCCT 62.395 66.667 0.00 0.00 0.00 3.36
421 422 2.364780 CCTAACACGGTCCCTCCCC 61.365 68.421 0.00 0.00 0.00 4.81
422 423 3.027675 GCCTAACACGGTCCCTCCC 62.028 68.421 0.00 0.00 0.00 4.30
423 424 1.988406 AGCCTAACACGGTCCCTCC 60.988 63.158 0.00 0.00 0.00 4.30
424 425 1.218316 CAGCCTAACACGGTCCCTC 59.782 63.158 0.00 0.00 0.00 4.30
425 426 0.617820 ATCAGCCTAACACGGTCCCT 60.618 55.000 0.00 0.00 0.00 4.20
426 427 1.117150 TATCAGCCTAACACGGTCCC 58.883 55.000 0.00 0.00 0.00 4.46
427 428 1.202498 GGTATCAGCCTAACACGGTCC 60.202 57.143 0.00 0.00 0.00 4.46
428 429 1.479323 TGGTATCAGCCTAACACGGTC 59.521 52.381 0.00 0.00 0.00 4.79
429 430 1.563924 TGGTATCAGCCTAACACGGT 58.436 50.000 0.00 0.00 0.00 4.83
430 431 2.158957 ACATGGTATCAGCCTAACACGG 60.159 50.000 0.00 0.00 0.00 4.94
431 432 3.179443 ACATGGTATCAGCCTAACACG 57.821 47.619 0.00 0.00 0.00 4.49
432 433 5.277857 AGTACATGGTATCAGCCTAACAC 57.722 43.478 0.00 0.00 0.00 3.32
433 434 4.344102 GGAGTACATGGTATCAGCCTAACA 59.656 45.833 0.00 0.00 0.00 2.41
434 435 4.262506 GGGAGTACATGGTATCAGCCTAAC 60.263 50.000 0.00 0.00 0.00 2.34
435 436 3.901844 GGGAGTACATGGTATCAGCCTAA 59.098 47.826 0.00 0.00 0.00 2.69
436 437 3.142217 AGGGAGTACATGGTATCAGCCTA 59.858 47.826 0.00 0.00 0.00 3.93
437 438 2.090494 AGGGAGTACATGGTATCAGCCT 60.090 50.000 0.00 0.00 0.00 4.58
438 439 2.300437 GAGGGAGTACATGGTATCAGCC 59.700 54.545 0.00 0.00 0.00 4.85
439 440 2.300437 GGAGGGAGTACATGGTATCAGC 59.700 54.545 0.00 0.00 0.00 4.26
440 441 2.558795 CGGAGGGAGTACATGGTATCAG 59.441 54.545 0.00 0.00 0.00 2.90
441 442 2.091499 ACGGAGGGAGTACATGGTATCA 60.091 50.000 0.00 0.00 0.00 2.15
442 443 2.595238 ACGGAGGGAGTACATGGTATC 58.405 52.381 0.00 0.00 0.00 2.24
443 444 2.769602 ACGGAGGGAGTACATGGTAT 57.230 50.000 0.00 0.00 0.00 2.73
444 445 2.381911 GAACGGAGGGAGTACATGGTA 58.618 52.381 0.00 0.00 0.00 3.25
445 446 1.192428 GAACGGAGGGAGTACATGGT 58.808 55.000 0.00 0.00 0.00 3.55
446 447 0.464452 GGAACGGAGGGAGTACATGG 59.536 60.000 0.00 0.00 0.00 3.66
447 448 1.191535 TGGAACGGAGGGAGTACATG 58.808 55.000 0.00 0.00 0.00 3.21
448 449 1.946984 TTGGAACGGAGGGAGTACAT 58.053 50.000 0.00 0.00 0.00 2.29
449 450 1.719529 TTTGGAACGGAGGGAGTACA 58.280 50.000 0.00 0.00 0.00 2.90
450 451 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
451 452 4.098894 AGTATTTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
452 453 2.910977 AGTATTTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
453 454 3.629142 AGTATTTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
454 455 3.328343 TCAAGTATTTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 0.00 4.20
455 456 3.439129 GTCAAGTATTTTGGAACGGAGGG 59.561 47.826 0.00 0.00 0.00 4.30
456 457 4.324267 AGTCAAGTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
457 458 5.941948 AAGTCAAGTATTTTGGAACGGAG 57.058 39.130 0.00 0.00 0.00 4.63
458 459 5.823570 TGAAAGTCAAGTATTTTGGAACGGA 59.176 36.000 0.00 0.00 0.00 4.69
459 460 6.067263 TGAAAGTCAAGTATTTTGGAACGG 57.933 37.500 0.00 0.00 0.00 4.44
460 461 8.479280 CAAATGAAAGTCAAGTATTTTGGAACG 58.521 33.333 0.00 0.00 0.00 3.95
461 462 9.313118 ACAAATGAAAGTCAAGTATTTTGGAAC 57.687 29.630 0.00 0.00 30.08 3.62
462 463 9.883142 AACAAATGAAAGTCAAGTATTTTGGAA 57.117 25.926 0.00 0.00 30.08 3.53
463 464 9.528018 GAACAAATGAAAGTCAAGTATTTTGGA 57.472 29.630 0.00 0.00 30.08 3.53
464 465 9.311916 TGAACAAATGAAAGTCAAGTATTTTGG 57.688 29.630 0.00 0.00 30.08 3.28
471 472 9.434420 TCATTTTTGAACAAATGAAAGTCAAGT 57.566 25.926 6.41 0.00 45.85 3.16
537 538 9.941325 ACAATACATGCCTTTCATTTATCAAAA 57.059 25.926 0.00 0.00 29.29 2.44
538 539 9.368674 CACAATACATGCCTTTCATTTATCAAA 57.631 29.630 0.00 0.00 29.29 2.69
539 540 7.980662 CCACAATACATGCCTTTCATTTATCAA 59.019 33.333 0.00 0.00 29.29 2.57
540 541 7.341512 TCCACAATACATGCCTTTCATTTATCA 59.658 33.333 0.00 0.00 29.29 2.15
541 542 7.715657 TCCACAATACATGCCTTTCATTTATC 58.284 34.615 0.00 0.00 29.29 1.75
542 543 7.658525 TCCACAATACATGCCTTTCATTTAT 57.341 32.000 0.00 0.00 31.28 1.40
543 544 7.473735 TTCCACAATACATGCCTTTCATTTA 57.526 32.000 0.00 0.00 31.79 1.40
544 545 5.999205 TCCACAATACATGCCTTTCATTT 57.001 34.783 0.00 0.00 31.79 2.32
545 546 5.999205 TTCCACAATACATGCCTTTCATT 57.001 34.783 0.00 0.00 31.79 2.57
546 547 5.163385 CCATTCCACAATACATGCCTTTCAT 60.163 40.000 0.00 0.00 35.31 2.57
547 548 4.160065 CCATTCCACAATACATGCCTTTCA 59.840 41.667 0.00 0.00 0.00 2.69
548 549 4.402155 TCCATTCCACAATACATGCCTTTC 59.598 41.667 0.00 0.00 0.00 2.62
549 550 4.352009 TCCATTCCACAATACATGCCTTT 58.648 39.130 0.00 0.00 0.00 3.11
550 551 3.956199 CTCCATTCCACAATACATGCCTT 59.044 43.478 0.00 0.00 0.00 4.35
551 552 3.559069 CTCCATTCCACAATACATGCCT 58.441 45.455 0.00 0.00 0.00 4.75
552 553 2.624838 CCTCCATTCCACAATACATGCC 59.375 50.000 0.00 0.00 0.00 4.40
553 554 2.624838 CCCTCCATTCCACAATACATGC 59.375 50.000 0.00 0.00 0.00 4.06
554 555 4.139786 CTCCCTCCATTCCACAATACATG 58.860 47.826 0.00 0.00 0.00 3.21
555 556 3.788142 ACTCCCTCCATTCCACAATACAT 59.212 43.478 0.00 0.00 0.00 2.29
556 557 3.189606 ACTCCCTCCATTCCACAATACA 58.810 45.455 0.00 0.00 0.00 2.29
557 558 3.933861 ACTCCCTCCATTCCACAATAC 57.066 47.619 0.00 0.00 0.00 1.89
558 559 4.890988 TCTACTCCCTCCATTCCACAATA 58.109 43.478 0.00 0.00 0.00 1.90
559 560 3.713764 CTCTACTCCCTCCATTCCACAAT 59.286 47.826 0.00 0.00 0.00 2.71
560 561 3.107601 CTCTACTCCCTCCATTCCACAA 58.892 50.000 0.00 0.00 0.00 3.33
561 562 2.626950 CCTCTACTCCCTCCATTCCACA 60.627 54.545 0.00 0.00 0.00 4.17
562 563 2.043227 CCTCTACTCCCTCCATTCCAC 58.957 57.143 0.00 0.00 0.00 4.02
563 564 1.937350 TCCTCTACTCCCTCCATTCCA 59.063 52.381 0.00 0.00 0.00 3.53
564 565 2.777459 TCCTCTACTCCCTCCATTCC 57.223 55.000 0.00 0.00 0.00 3.01
565 566 4.227197 TCAATCCTCTACTCCCTCCATTC 58.773 47.826 0.00 0.00 0.00 2.67
566 567 4.286813 TCAATCCTCTACTCCCTCCATT 57.713 45.455 0.00 0.00 0.00 3.16
567 568 4.166539 CATCAATCCTCTACTCCCTCCAT 58.833 47.826 0.00 0.00 0.00 3.41
568 569 3.581101 CATCAATCCTCTACTCCCTCCA 58.419 50.000 0.00 0.00 0.00 3.86
569 570 2.301583 GCATCAATCCTCTACTCCCTCC 59.698 54.545 0.00 0.00 0.00 4.30
570 571 2.968574 TGCATCAATCCTCTACTCCCTC 59.031 50.000 0.00 0.00 0.00 4.30
571 572 3.051940 TGCATCAATCCTCTACTCCCT 57.948 47.619 0.00 0.00 0.00 4.20
572 573 3.135530 AGTTGCATCAATCCTCTACTCCC 59.864 47.826 0.00 0.00 0.00 4.30
573 574 4.141846 TGAGTTGCATCAATCCTCTACTCC 60.142 45.833 5.63 0.00 32.86 3.85
574 575 4.808364 GTGAGTTGCATCAATCCTCTACTC 59.192 45.833 0.00 0.00 33.87 2.59
575 576 4.679106 CGTGAGTTGCATCAATCCTCTACT 60.679 45.833 0.00 0.00 0.00 2.57
576 577 3.553511 CGTGAGTTGCATCAATCCTCTAC 59.446 47.826 0.00 0.00 0.00 2.59
577 578 3.447229 TCGTGAGTTGCATCAATCCTCTA 59.553 43.478 0.00 0.00 0.00 2.43
578 579 2.234661 TCGTGAGTTGCATCAATCCTCT 59.765 45.455 0.00 0.00 0.00 3.69
579 580 2.621338 TCGTGAGTTGCATCAATCCTC 58.379 47.619 0.00 0.00 0.00 3.71
580 581 2.768253 TCGTGAGTTGCATCAATCCT 57.232 45.000 0.00 0.00 0.00 3.24
581 582 6.974932 ATATATCGTGAGTTGCATCAATCC 57.025 37.500 0.00 0.00 0.00 3.01
582 583 8.021955 TGAATATATCGTGAGTTGCATCAATC 57.978 34.615 0.00 0.00 0.00 2.67
583 584 7.967890 TGAATATATCGTGAGTTGCATCAAT 57.032 32.000 0.00 0.00 0.00 2.57
584 585 7.148755 CGATGAATATATCGTGAGTTGCATCAA 60.149 37.037 0.00 0.00 43.60 2.57
585 586 6.308766 CGATGAATATATCGTGAGTTGCATCA 59.691 38.462 0.00 0.00 43.60 3.07
586 587 6.237675 CCGATGAATATATCGTGAGTTGCATC 60.238 42.308 7.03 0.00 46.31 3.91
587 588 5.578336 CCGATGAATATATCGTGAGTTGCAT 59.422 40.000 7.03 0.00 46.31 3.96
588 589 4.923281 CCGATGAATATATCGTGAGTTGCA 59.077 41.667 7.03 0.00 46.31 4.08
589 590 5.161358 TCCGATGAATATATCGTGAGTTGC 58.839 41.667 7.03 0.00 46.31 4.17
590 591 6.237675 GCATCCGATGAATATATCGTGAGTTG 60.238 42.308 12.79 3.15 46.31 3.16
591 592 5.807520 GCATCCGATGAATATATCGTGAGTT 59.192 40.000 12.79 0.00 46.31 3.01
592 593 5.105756 TGCATCCGATGAATATATCGTGAGT 60.106 40.000 12.79 0.00 46.31 3.41
593 594 5.343249 TGCATCCGATGAATATATCGTGAG 58.657 41.667 12.79 0.00 46.31 3.51
594 595 5.323371 TGCATCCGATGAATATATCGTGA 57.677 39.130 12.79 4.95 46.31 4.35
595 596 7.620806 GCATATGCATCCGATGAATATATCGTG 60.621 40.741 22.84 10.60 39.06 4.35
596 597 6.367149 GCATATGCATCCGATGAATATATCGT 59.633 38.462 22.84 0.00 39.06 3.73
597 598 6.759137 GCATATGCATCCGATGAATATATCG 58.241 40.000 22.84 9.92 39.06 2.92
632 633 9.503369 AGGTCTAAACTCCTTTTGTACCTATAT 57.497 33.333 0.00 0.00 39.83 0.86
633 634 8.906238 AGGTCTAAACTCCTTTTGTACCTATA 57.094 34.615 0.00 0.00 39.83 1.31
634 635 7.456902 TGAGGTCTAAACTCCTTTTGTACCTAT 59.543 37.037 0.00 0.00 40.85 2.57
635 636 6.783977 TGAGGTCTAAACTCCTTTTGTACCTA 59.216 38.462 0.00 0.00 40.85 3.08
636 637 5.605488 TGAGGTCTAAACTCCTTTTGTACCT 59.395 40.000 0.00 0.00 42.28 3.08
637 638 5.861727 TGAGGTCTAAACTCCTTTTGTACC 58.138 41.667 0.00 0.00 35.20 3.34
638 639 6.990939 AGTTGAGGTCTAAACTCCTTTTGTAC 59.009 38.462 0.00 0.00 30.87 2.90
639 640 7.133133 AGTTGAGGTCTAAACTCCTTTTGTA 57.867 36.000 0.00 0.00 30.87 2.41
640 641 6.002653 AGTTGAGGTCTAAACTCCTTTTGT 57.997 37.500 0.00 0.00 30.87 2.83
641 642 9.152595 GTATAGTTGAGGTCTAAACTCCTTTTG 57.847 37.037 4.10 0.00 37.74 2.44
642 643 8.877195 TGTATAGTTGAGGTCTAAACTCCTTTT 58.123 33.333 4.10 0.00 37.74 2.27
643 644 8.431910 TGTATAGTTGAGGTCTAAACTCCTTT 57.568 34.615 4.10 0.00 37.74 3.11
644 645 8.431910 TTGTATAGTTGAGGTCTAAACTCCTT 57.568 34.615 4.10 0.00 37.74 3.36
645 646 7.894364 TCTTGTATAGTTGAGGTCTAAACTCCT 59.106 37.037 4.10 0.00 37.74 3.69
646 647 8.064336 TCTTGTATAGTTGAGGTCTAAACTCC 57.936 38.462 4.10 0.00 37.74 3.85
647 648 9.924650 TTTCTTGTATAGTTGAGGTCTAAACTC 57.075 33.333 4.10 0.00 37.74 3.01
648 649 9.930693 CTTTCTTGTATAGTTGAGGTCTAAACT 57.069 33.333 6.05 6.05 39.82 2.66
649 650 9.152595 CCTTTCTTGTATAGTTGAGGTCTAAAC 57.847 37.037 0.00 0.00 0.00 2.01
650 651 9.096823 TCCTTTCTTGTATAGTTGAGGTCTAAA 57.903 33.333 0.00 0.00 0.00 1.85
651 652 8.660295 TCCTTTCTTGTATAGTTGAGGTCTAA 57.340 34.615 0.00 0.00 0.00 2.10
652 653 8.114102 TCTCCTTTCTTGTATAGTTGAGGTCTA 58.886 37.037 0.00 0.00 0.00 2.59
653 654 6.954684 TCTCCTTTCTTGTATAGTTGAGGTCT 59.045 38.462 0.00 0.00 0.00 3.85
654 655 7.171630 TCTCCTTTCTTGTATAGTTGAGGTC 57.828 40.000 0.00 0.00 0.00 3.85
655 656 7.741554 ATCTCCTTTCTTGTATAGTTGAGGT 57.258 36.000 0.00 0.00 0.00 3.85
656 657 9.137459 TCTATCTCCTTTCTTGTATAGTTGAGG 57.863 37.037 0.00 0.00 0.00 3.86
657 658 9.959749 GTCTATCTCCTTTCTTGTATAGTTGAG 57.040 37.037 0.00 0.00 0.00 3.02
658 659 9.702253 AGTCTATCTCCTTTCTTGTATAGTTGA 57.298 33.333 0.00 0.00 0.00 3.18
661 662 9.930158 AGAAGTCTATCTCCTTTCTTGTATAGT 57.070 33.333 0.00 0.00 0.00 2.12
664 665 9.041354 ACAAGAAGTCTATCTCCTTTCTTGTAT 57.959 33.333 22.21 6.05 37.33 2.29
665 666 8.423906 ACAAGAAGTCTATCTCCTTTCTTGTA 57.576 34.615 22.21 0.00 37.33 2.41
666 667 7.309770 ACAAGAAGTCTATCTCCTTTCTTGT 57.690 36.000 19.48 19.48 36.00 3.16
667 668 8.307483 TGTACAAGAAGTCTATCTCCTTTCTTG 58.693 37.037 18.46 18.46 34.99 3.02
668 669 8.423906 TGTACAAGAAGTCTATCTCCTTTCTT 57.576 34.615 0.00 0.00 0.00 2.52
669 670 8.423906 TTGTACAAGAAGTCTATCTCCTTTCT 57.576 34.615 3.59 0.00 0.00 2.52
670 671 8.524487 TCTTGTACAAGAAGTCTATCTCCTTTC 58.476 37.037 31.26 0.00 43.79 2.62
671 672 8.423906 TCTTGTACAAGAAGTCTATCTCCTTT 57.576 34.615 31.26 0.00 43.79 3.11
685 686 4.637977 TGCATGTGTGTTTCTTGTACAAGA 59.362 37.500 30.07 30.07 44.94 3.02
686 687 4.919206 TGCATGTGTGTTTCTTGTACAAG 58.081 39.130 26.60 26.60 39.71 3.16
687 688 4.972514 TGCATGTGTGTTTCTTGTACAA 57.027 36.364 8.28 8.28 0.00 2.41
688 689 4.972514 TTGCATGTGTGTTTCTTGTACA 57.027 36.364 0.00 0.00 0.00 2.90
689 690 8.233868 TGTATATTGCATGTGTGTTTCTTGTAC 58.766 33.333 0.00 0.00 0.00 2.90
690 691 8.329203 TGTATATTGCATGTGTGTTTCTTGTA 57.671 30.769 0.00 0.00 0.00 2.41
691 692 7.213216 TGTATATTGCATGTGTGTTTCTTGT 57.787 32.000 0.00 0.00 0.00 3.16
692 693 8.186163 AGATGTATATTGCATGTGTGTTTCTTG 58.814 33.333 0.00 0.00 0.00 3.02
693 694 8.284945 AGATGTATATTGCATGTGTGTTTCTT 57.715 30.769 0.00 0.00 0.00 2.52
694 695 7.254556 CGAGATGTATATTGCATGTGTGTTTCT 60.255 37.037 0.00 0.00 0.00 2.52
695 696 6.847792 CGAGATGTATATTGCATGTGTGTTTC 59.152 38.462 0.00 0.00 0.00 2.78
696 697 6.538381 TCGAGATGTATATTGCATGTGTGTTT 59.462 34.615 0.00 0.00 0.00 2.83
697 698 6.018751 GTCGAGATGTATATTGCATGTGTGTT 60.019 38.462 0.00 0.00 0.00 3.32
698 699 5.463392 GTCGAGATGTATATTGCATGTGTGT 59.537 40.000 0.00 0.00 0.00 3.72
699 700 5.463061 TGTCGAGATGTATATTGCATGTGTG 59.537 40.000 0.00 0.00 0.00 3.82
700 701 5.600696 TGTCGAGATGTATATTGCATGTGT 58.399 37.500 0.00 0.00 0.00 3.72
701 702 6.347160 CCTTGTCGAGATGTATATTGCATGTG 60.347 42.308 0.00 0.00 0.00 3.21
702 703 5.698089 CCTTGTCGAGATGTATATTGCATGT 59.302 40.000 0.00 0.00 0.00 3.21
703 704 5.390251 GCCTTGTCGAGATGTATATTGCATG 60.390 44.000 0.00 0.00 0.00 4.06
704 705 4.692625 GCCTTGTCGAGATGTATATTGCAT 59.307 41.667 0.00 0.00 0.00 3.96
705 706 4.058124 GCCTTGTCGAGATGTATATTGCA 58.942 43.478 0.00 0.00 0.00 4.08
706 707 3.433615 GGCCTTGTCGAGATGTATATTGC 59.566 47.826 0.00 0.00 0.00 3.56
707 708 3.997021 GGGCCTTGTCGAGATGTATATTG 59.003 47.826 0.84 0.00 0.00 1.90
708 709 3.646162 TGGGCCTTGTCGAGATGTATATT 59.354 43.478 4.53 0.00 0.00 1.28
709 710 3.239449 TGGGCCTTGTCGAGATGTATAT 58.761 45.455 4.53 0.00 0.00 0.86
710 711 2.673258 TGGGCCTTGTCGAGATGTATA 58.327 47.619 4.53 0.00 0.00 1.47
711 712 1.496060 TGGGCCTTGTCGAGATGTAT 58.504 50.000 4.53 0.00 0.00 2.29
712 713 1.066430 GTTGGGCCTTGTCGAGATGTA 60.066 52.381 4.53 0.00 0.00 2.29
713 714 0.321653 GTTGGGCCTTGTCGAGATGT 60.322 55.000 4.53 0.00 0.00 3.06
714 715 0.036010 AGTTGGGCCTTGTCGAGATG 60.036 55.000 4.53 0.00 0.00 2.90
715 716 0.250513 GAGTTGGGCCTTGTCGAGAT 59.749 55.000 4.53 0.00 0.00 2.75
716 717 1.671742 GAGTTGGGCCTTGTCGAGA 59.328 57.895 4.53 0.00 0.00 4.04
717 718 1.738099 CGAGTTGGGCCTTGTCGAG 60.738 63.158 14.31 0.00 32.32 4.04
718 719 2.154798 CTCGAGTTGGGCCTTGTCGA 62.155 60.000 18.95 18.95 37.32 4.20
719 720 1.738099 CTCGAGTTGGGCCTTGTCG 60.738 63.158 4.53 10.31 0.00 4.35
720 721 2.035442 GCTCGAGTTGGGCCTTGTC 61.035 63.158 15.13 0.00 0.00 3.18
721 722 2.032681 GCTCGAGTTGGGCCTTGT 59.967 61.111 15.13 0.00 0.00 3.16
722 723 2.747855 GGCTCGAGTTGGGCCTTG 60.748 66.667 14.76 0.00 42.31 3.61
723 724 3.249189 TGGCTCGAGTTGGGCCTT 61.249 61.111 22.41 0.00 45.45 4.35
724 725 4.021925 GTGGCTCGAGTTGGGCCT 62.022 66.667 22.41 0.00 45.45 5.19
725 726 4.329545 TGTGGCTCGAGTTGGGCC 62.330 66.667 15.19 15.19 45.45 5.80
726 727 3.050275 GTGTGGCTCGAGTTGGGC 61.050 66.667 15.13 1.15 0.00 5.36
727 728 1.669115 CAGTGTGGCTCGAGTTGGG 60.669 63.158 15.13 0.00 0.00 4.12
728 729 0.036952 ATCAGTGTGGCTCGAGTTGG 60.037 55.000 15.13 0.00 0.00 3.77
729 730 1.067283 AGATCAGTGTGGCTCGAGTTG 60.067 52.381 15.13 3.91 0.00 3.16
730 731 1.067283 CAGATCAGTGTGGCTCGAGTT 60.067 52.381 15.13 0.00 0.00 3.01
731 732 0.529833 CAGATCAGTGTGGCTCGAGT 59.470 55.000 15.13 0.00 0.00 4.18
732 733 0.179116 CCAGATCAGTGTGGCTCGAG 60.179 60.000 8.45 8.45 31.30 4.04
733 734 1.893062 CCAGATCAGTGTGGCTCGA 59.107 57.895 0.00 0.00 31.30 4.04
734 735 4.509756 CCAGATCAGTGTGGCTCG 57.490 61.111 0.00 0.00 31.30 5.03
738 739 1.812922 GCGAGCCAGATCAGTGTGG 60.813 63.158 0.00 0.00 41.60 4.17
739 740 0.390866 AAGCGAGCCAGATCAGTGTG 60.391 55.000 0.00 0.00 0.00 3.82
740 741 1.134965 GTAAGCGAGCCAGATCAGTGT 60.135 52.381 0.00 0.00 0.00 3.55
741 742 1.134995 TGTAAGCGAGCCAGATCAGTG 60.135 52.381 0.00 0.00 0.00 3.66
742 743 1.186200 TGTAAGCGAGCCAGATCAGT 58.814 50.000 0.00 0.00 0.00 3.41
743 744 2.402305 GATGTAAGCGAGCCAGATCAG 58.598 52.381 0.00 0.00 0.00 2.90
744 745 1.069204 GGATGTAAGCGAGCCAGATCA 59.931 52.381 0.00 0.00 0.00 2.92
745 746 1.789506 GGATGTAAGCGAGCCAGATC 58.210 55.000 0.00 0.00 0.00 2.75
746 747 0.032678 CGGATGTAAGCGAGCCAGAT 59.967 55.000 0.00 0.00 0.00 2.90
747 748 1.035385 TCGGATGTAAGCGAGCCAGA 61.035 55.000 0.00 0.00 0.00 3.86
748 749 0.179111 TTCGGATGTAAGCGAGCCAG 60.179 55.000 0.00 0.00 0.00 4.85
749 750 0.459585 GTTCGGATGTAAGCGAGCCA 60.460 55.000 0.00 0.00 0.00 4.75
750 751 0.459585 TGTTCGGATGTAAGCGAGCC 60.460 55.000 0.00 0.00 0.00 4.70
751 752 1.324736 CTTGTTCGGATGTAAGCGAGC 59.675 52.381 0.00 0.00 0.00 5.03
752 753 1.927174 CCTTGTTCGGATGTAAGCGAG 59.073 52.381 0.00 0.00 0.00 5.03
753 754 2.004583 CCTTGTTCGGATGTAAGCGA 57.995 50.000 0.00 0.00 0.00 4.93
754 755 0.373716 GCCTTGTTCGGATGTAAGCG 59.626 55.000 0.00 0.00 0.00 4.68
755 756 0.373716 CGCCTTGTTCGGATGTAAGC 59.626 55.000 0.00 0.00 0.00 3.09
756 757 1.659098 GACGCCTTGTTCGGATGTAAG 59.341 52.381 0.00 0.00 0.00 2.34
757 758 1.274167 AGACGCCTTGTTCGGATGTAA 59.726 47.619 0.00 0.00 0.00 2.41
758 759 0.892755 AGACGCCTTGTTCGGATGTA 59.107 50.000 0.00 0.00 0.00 2.29
759 760 0.389948 GAGACGCCTTGTTCGGATGT 60.390 55.000 0.00 0.00 0.00 3.06
760 761 1.413767 CGAGACGCCTTGTTCGGATG 61.414 60.000 0.00 0.00 31.71 3.51
761 762 1.153823 CGAGACGCCTTGTTCGGAT 60.154 57.895 0.00 0.00 31.71 4.18
762 763 1.236616 TACGAGACGCCTTGTTCGGA 61.237 55.000 0.00 0.00 38.05 4.55
763 764 0.179145 ATACGAGACGCCTTGTTCGG 60.179 55.000 0.00 0.00 38.05 4.30
764 765 1.582502 GAATACGAGACGCCTTGTTCG 59.417 52.381 0.00 0.00 38.05 3.95
765 766 1.925185 GGAATACGAGACGCCTTGTTC 59.075 52.381 0.00 0.00 38.05 3.18
766 767 1.405121 GGGAATACGAGACGCCTTGTT 60.405 52.381 0.00 0.00 38.05 2.83
767 768 0.175073 GGGAATACGAGACGCCTTGT 59.825 55.000 0.00 0.00 40.13 3.16
768 769 0.529992 GGGGAATACGAGACGCCTTG 60.530 60.000 0.00 0.00 34.52 3.61
769 770 0.686769 AGGGGAATACGAGACGCCTT 60.687 55.000 0.00 0.00 42.76 4.35
770 771 1.076192 AGGGGAATACGAGACGCCT 60.076 57.895 0.00 0.00 41.07 5.52
771 772 1.363080 GAGGGGAATACGAGACGCC 59.637 63.158 0.00 0.00 36.99 5.68
772 773 0.248949 GTGAGGGGAATACGAGACGC 60.249 60.000 0.00 0.00 0.00 5.19
773 774 0.029035 CGTGAGGGGAATACGAGACG 59.971 60.000 0.00 0.00 40.01 4.18
774 775 0.248949 GCGTGAGGGGAATACGAGAC 60.249 60.000 0.00 0.00 40.01 3.36
775 776 0.395311 AGCGTGAGGGGAATACGAGA 60.395 55.000 0.00 0.00 40.01 4.04
776 777 1.267261 CTAGCGTGAGGGGAATACGAG 59.733 57.143 0.00 0.00 40.01 4.18
777 778 1.315690 CTAGCGTGAGGGGAATACGA 58.684 55.000 0.00 0.00 40.01 3.43
778 779 0.314302 CCTAGCGTGAGGGGAATACG 59.686 60.000 0.00 0.00 40.52 3.06
791 792 1.550976 AGAGGAACAGAAACCCTAGCG 59.449 52.381 0.00 0.00 0.00 4.26
953 955 0.035820 TATCGGGTGTTGTTGGAGCC 60.036 55.000 0.00 0.00 0.00 4.70
973 978 4.273300 AGCCCTTACTCTATGGAGAAGT 57.727 45.455 13.73 0.00 41.86 3.01
983 988 2.035632 CCATCTCGAAGCCCTTACTCT 58.964 52.381 0.00 0.00 0.00 3.24
985 990 0.466124 GCCATCTCGAAGCCCTTACT 59.534 55.000 0.00 0.00 0.00 2.24
988 993 0.107459 GAAGCCATCTCGAAGCCCTT 60.107 55.000 0.00 0.00 0.00 3.95
993 998 2.897436 TCATGTGAAGCCATCTCGAAG 58.103 47.619 0.00 0.00 0.00 3.79
1010 1015 1.050988 AGCAGCACCGGGAGTATCAT 61.051 55.000 6.32 0.00 36.25 2.45
1011 1016 0.396556 TAGCAGCACCGGGAGTATCA 60.397 55.000 6.32 0.00 36.25 2.15
1014 1019 2.412323 CGTAGCAGCACCGGGAGTA 61.412 63.158 6.32 0.00 0.00 2.59
1231 1236 2.238521 GAACTTCACATCTTGGGCCAA 58.761 47.619 19.68 19.68 0.00 4.52
1370 1375 0.523335 CGATGGCTTTGCTAAACCGC 60.523 55.000 0.00 0.00 0.00 5.68
1371 1376 1.083489 TCGATGGCTTTGCTAAACCG 58.917 50.000 0.00 0.00 0.00 4.44
1398 1403 5.197224 TCCAGATTTCAATGGAATCCAGT 57.803 39.130 10.49 1.07 42.61 4.00
1514 1519 5.584649 CGATGGAAATTGCCTGTAAAGTCTA 59.415 40.000 3.49 0.00 0.00 2.59
1734 1740 1.600957 CGCATTACCCATGAAGCTCAG 59.399 52.381 0.00 0.00 34.31 3.35
1749 1755 3.376078 CCTTGGCCAGTGCGCATT 61.376 61.111 15.91 6.43 38.85 3.56
1873 1892 1.107114 GTCAGCATCTTCCTCCTCGA 58.893 55.000 0.00 0.00 0.00 4.04
1906 1925 2.183679 CTACCCTCTTCCTGTTCAGCT 58.816 52.381 0.00 0.00 0.00 4.24
2067 2086 2.499289 CACTGATCCTGTCACTAGCCTT 59.501 50.000 0.00 0.00 32.22 4.35
2068 2087 2.106566 CACTGATCCTGTCACTAGCCT 58.893 52.381 0.00 0.00 32.22 4.58
2152 2171 0.461961 GGAGACTCATTGCGCTAGGT 59.538 55.000 9.73 1.50 0.00 3.08
2222 2254 3.061295 GCATATTGCCTCGTCATATCACG 59.939 47.826 0.00 0.00 37.42 4.35
2447 2485 6.601332 AGGTCACTCTAGATTTTGTTCCAAA 58.399 36.000 0.00 0.00 0.00 3.28
2454 2492 6.787085 AAACGAAGGTCACTCTAGATTTTG 57.213 37.500 0.00 0.00 0.00 2.44
2595 2633 1.098050 GCCCACTCCATCATGTTCAC 58.902 55.000 0.00 0.00 0.00 3.18
2608 2646 1.972872 CTTGACTTCTGTTGCCCACT 58.027 50.000 0.00 0.00 0.00 4.00
2670 2708 7.294720 TGTTCCCTGTATAACCAATATCCATCT 59.705 37.037 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.