Multiple sequence alignment - TraesCS6A01G134000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G134000 chr6A 100.000 3697 0 0 1 3697 106454233 106457929 0.000000e+00 6828.0
1 TraesCS6A01G134000 chr6A 88.795 589 52 9 3120 3697 583987804 583987219 0.000000e+00 710.0
2 TraesCS6A01G134000 chr6D 94.001 2667 88 39 375 3021 88501975 88504589 0.000000e+00 3973.0
3 TraesCS6A01G134000 chr6D 93.056 72 4 1 3003 3074 88504604 88504674 1.820000e-18 104.0
4 TraesCS6A01G134000 chr6B 94.688 2466 70 35 623 3074 167031185 167028767 0.000000e+00 3771.0
5 TraesCS6A01G134000 chr6B 90.775 271 23 2 344 613 167033410 167033141 9.760000e-96 361.0
6 TraesCS6A01G134000 chr3A 92.845 587 34 5 3115 3697 657398357 657398939 0.000000e+00 845.0
7 TraesCS6A01G134000 chr7A 89.267 587 48 9 3118 3697 717402302 717402880 0.000000e+00 721.0
8 TraesCS6A01G134000 chr7A 72.760 1116 269 33 1532 2634 349685799 349684706 9.830000e-91 344.0
9 TraesCS6A01G134000 chr5A 88.345 592 50 13 3120 3697 399435865 399435279 0.000000e+00 693.0
10 TraesCS6A01G134000 chr3B 87.966 590 60 8 3113 3697 826560203 826560786 0.000000e+00 686.0
11 TraesCS6A01G134000 chr3B 87.797 590 61 8 3113 3697 826490781 826491364 0.000000e+00 680.0
12 TraesCS6A01G134000 chr3B 87.124 598 57 15 3114 3697 691709668 691710259 0.000000e+00 660.0
13 TraesCS6A01G134000 chrUn 87.797 590 61 8 3113 3697 317055361 317054778 0.000000e+00 680.0
14 TraesCS6A01G134000 chrUn 87.797 590 61 8 3113 3697 401126409 401125826 0.000000e+00 680.0
15 TraesCS6A01G134000 chr2A 76.248 1002 205 27 1597 2586 183550747 183551727 5.510000e-138 501.0
16 TraesCS6A01G134000 chr2A 75.192 1044 235 21 1597 2631 407740526 407739498 4.320000e-129 472.0
17 TraesCS6A01G134000 chr2D 75.461 1031 231 19 1597 2619 323076889 323077905 2.000000e-132 483.0
18 TraesCS6A01G134000 chr2B 74.879 1031 237 19 1597 2619 390925542 390926558 2.020000e-122 449.0
19 TraesCS6A01G134000 chr2B 90.545 275 5 2 1927 2201 794676785 794677038 9.830000e-91 344.0
20 TraesCS6A01G134000 chr7D 72.443 1310 320 39 1341 2634 309913623 309912339 7.490000e-102 381.0
21 TraesCS6A01G134000 chr7B 73.022 1112 267 31 1532 2631 304524296 304525386 9.760000e-96 361.0
22 TraesCS6A01G134000 chr7B 100.000 28 0 0 1341 1368 304524105 304524132 7.000000e-03 52.8
23 TraesCS6A01G134000 chr5B 78.261 92 18 2 1338 1428 764587 764497 1.430000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G134000 chr6A 106454233 106457929 3696 False 6828.0 6828 100.0000 1 3697 1 chr6A.!!$F1 3696
1 TraesCS6A01G134000 chr6A 583987219 583987804 585 True 710.0 710 88.7950 3120 3697 1 chr6A.!!$R1 577
2 TraesCS6A01G134000 chr6D 88501975 88504674 2699 False 2038.5 3973 93.5285 375 3074 2 chr6D.!!$F1 2699
3 TraesCS6A01G134000 chr6B 167028767 167033410 4643 True 2066.0 3771 92.7315 344 3074 2 chr6B.!!$R1 2730
4 TraesCS6A01G134000 chr3A 657398357 657398939 582 False 845.0 845 92.8450 3115 3697 1 chr3A.!!$F1 582
5 TraesCS6A01G134000 chr7A 717402302 717402880 578 False 721.0 721 89.2670 3118 3697 1 chr7A.!!$F1 579
6 TraesCS6A01G134000 chr7A 349684706 349685799 1093 True 344.0 344 72.7600 1532 2634 1 chr7A.!!$R1 1102
7 TraesCS6A01G134000 chr5A 399435279 399435865 586 True 693.0 693 88.3450 3120 3697 1 chr5A.!!$R1 577
8 TraesCS6A01G134000 chr3B 826560203 826560786 583 False 686.0 686 87.9660 3113 3697 1 chr3B.!!$F3 584
9 TraesCS6A01G134000 chr3B 826490781 826491364 583 False 680.0 680 87.7970 3113 3697 1 chr3B.!!$F2 584
10 TraesCS6A01G134000 chr3B 691709668 691710259 591 False 660.0 660 87.1240 3114 3697 1 chr3B.!!$F1 583
11 TraesCS6A01G134000 chrUn 317054778 317055361 583 True 680.0 680 87.7970 3113 3697 1 chrUn.!!$R1 584
12 TraesCS6A01G134000 chrUn 401125826 401126409 583 True 680.0 680 87.7970 3113 3697 1 chrUn.!!$R2 584
13 TraesCS6A01G134000 chr2A 183550747 183551727 980 False 501.0 501 76.2480 1597 2586 1 chr2A.!!$F1 989
14 TraesCS6A01G134000 chr2A 407739498 407740526 1028 True 472.0 472 75.1920 1597 2631 1 chr2A.!!$R1 1034
15 TraesCS6A01G134000 chr2D 323076889 323077905 1016 False 483.0 483 75.4610 1597 2619 1 chr2D.!!$F1 1022
16 TraesCS6A01G134000 chr2B 390925542 390926558 1016 False 449.0 449 74.8790 1597 2619 1 chr2B.!!$F1 1022
17 TraesCS6A01G134000 chr7D 309912339 309913623 1284 True 381.0 381 72.4430 1341 2634 1 chr7D.!!$R1 1293
18 TraesCS6A01G134000 chr7B 304524105 304525386 1281 False 206.9 361 86.5110 1341 2631 2 chr7B.!!$F1 1290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.031994 ACAGTGGTTTTGGCGCAATC 59.968 50.0 10.83 0.0 0.00 2.67 F
1153 3127 0.179103 CGGTAATTAACCCGTCGCCT 60.179 55.0 6.40 0.0 46.62 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1182 3156 1.616374 CAACACCCACACCCAATTACC 59.384 52.381 0.00 0.00 0.00 2.85 R
2769 4785 0.029035 ATTGGCTAGCTACGTCGACG 59.971 55.000 34.58 34.58 46.33 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.089854 CCCTGCGTGTTATGTCAGC 58.910 57.895 0.00 0.00 0.00 4.26
19 20 0.673333 CCCTGCGTGTTATGTCAGCA 60.673 55.000 0.00 0.00 36.34 4.41
20 21 1.372582 CCTGCGTGTTATGTCAGCAT 58.627 50.000 0.00 0.00 37.20 3.79
21 22 1.063027 CCTGCGTGTTATGTCAGCATG 59.937 52.381 0.00 0.00 37.20 4.06
22 23 1.733912 CTGCGTGTTATGTCAGCATGT 59.266 47.619 0.00 0.00 37.20 3.21
23 24 1.731709 TGCGTGTTATGTCAGCATGTC 59.268 47.619 0.00 0.00 37.40 3.06
24 25 1.731709 GCGTGTTATGTCAGCATGTCA 59.268 47.619 0.00 0.00 38.75 3.58
25 26 2.159430 GCGTGTTATGTCAGCATGTCAA 59.841 45.455 0.00 0.00 37.74 3.18
26 27 3.736213 CGTGTTATGTCAGCATGTCAAC 58.264 45.455 0.00 0.00 37.74 3.18
27 28 3.721791 CGTGTTATGTCAGCATGTCAACG 60.722 47.826 0.00 0.00 37.74 4.10
28 29 3.431912 GTGTTATGTCAGCATGTCAACGA 59.568 43.478 0.00 0.00 37.74 3.85
29 30 3.679502 TGTTATGTCAGCATGTCAACGAG 59.320 43.478 0.00 0.00 37.74 4.18
30 31 2.749280 ATGTCAGCATGTCAACGAGA 57.251 45.000 0.00 0.00 37.74 4.04
31 32 2.070262 TGTCAGCATGTCAACGAGAG 57.930 50.000 0.00 0.00 37.40 3.20
32 33 1.341209 TGTCAGCATGTCAACGAGAGT 59.659 47.619 0.00 0.00 42.73 3.24
33 34 1.723542 GTCAGCATGTCAACGAGAGTG 59.276 52.381 0.00 0.00 41.01 3.51
34 35 1.341209 TCAGCATGTCAACGAGAGTGT 59.659 47.619 0.00 0.00 41.01 3.55
35 36 2.608016 TCAGCATGTCAACGAGAGTGTC 60.608 50.000 0.00 0.00 41.01 3.67
36 37 5.709071 TCAGCATGTCAACGAGAGTGTCC 62.709 52.174 0.00 0.00 41.01 4.02
43 44 3.914984 ACGAGAGTGTCCCAATGTG 57.085 52.632 0.00 0.00 46.97 3.21
44 45 0.321671 ACGAGAGTGTCCCAATGTGG 59.678 55.000 0.00 0.00 46.97 4.17
54 55 3.309506 CAATGTGGGCCGGGCAAA 61.310 61.111 30.95 14.89 0.00 3.68
55 56 2.525381 AATGTGGGCCGGGCAAAA 60.525 55.556 30.95 15.62 0.00 2.44
56 57 2.143419 AATGTGGGCCGGGCAAAAA 61.143 52.632 30.95 13.07 0.00 1.94
57 58 2.390306 AATGTGGGCCGGGCAAAAAC 62.390 55.000 30.95 20.76 0.00 2.43
58 59 4.656117 GTGGGCCGGGCAAAAACG 62.656 66.667 30.95 0.00 0.00 3.60
66 67 3.608041 GGCAAAAACGCCGTTGAC 58.392 55.556 1.95 0.00 43.52 3.18
67 68 1.947146 GGCAAAAACGCCGTTGACC 60.947 57.895 1.95 0.00 43.52 4.02
68 69 1.947146 GCAAAAACGCCGTTGACCC 60.947 57.895 1.95 0.00 0.00 4.46
69 70 1.299544 CAAAAACGCCGTTGACCCC 60.300 57.895 1.95 0.00 0.00 4.95
70 71 2.836793 AAAAACGCCGTTGACCCCG 61.837 57.895 1.95 0.00 0.00 5.73
71 72 3.753806 AAAACGCCGTTGACCCCGA 62.754 57.895 1.95 0.00 0.00 5.14
72 73 4.974989 AACGCCGTTGACCCCGAC 62.975 66.667 0.00 0.00 0.00 4.79
76 77 3.677648 CCGTTGACCCCGACGTCT 61.678 66.667 14.70 0.00 46.13 4.18
77 78 2.126580 CGTTGACCCCGACGTCTC 60.127 66.667 14.70 4.73 43.40 3.36
78 79 2.623915 CGTTGACCCCGACGTCTCT 61.624 63.158 14.70 0.00 43.40 3.10
79 80 1.212229 GTTGACCCCGACGTCTCTC 59.788 63.158 14.70 3.09 33.70 3.20
80 81 2.330372 TTGACCCCGACGTCTCTCG 61.330 63.158 14.70 0.00 46.00 4.04
91 92 2.522372 CGTCTCTCGTGTATCGTTGT 57.478 50.000 0.00 0.00 40.80 3.32
92 93 2.166799 CGTCTCTCGTGTATCGTTGTG 58.833 52.381 0.00 0.00 40.80 3.33
93 94 2.159747 CGTCTCTCGTGTATCGTTGTGA 60.160 50.000 0.00 0.00 40.80 3.58
94 95 3.485381 CGTCTCTCGTGTATCGTTGTGAT 60.485 47.826 0.00 0.00 40.80 3.06
95 96 3.786576 GTCTCTCGTGTATCGTTGTGATG 59.213 47.826 0.00 0.00 37.99 3.07
96 97 3.108881 CTCTCGTGTATCGTTGTGATGG 58.891 50.000 0.00 0.00 37.99 3.51
97 98 2.159296 TCTCGTGTATCGTTGTGATGGG 60.159 50.000 0.00 0.00 37.99 4.00
98 99 1.546923 TCGTGTATCGTTGTGATGGGT 59.453 47.619 0.00 0.00 37.99 4.51
99 100 1.658596 CGTGTATCGTTGTGATGGGTG 59.341 52.381 0.00 0.00 37.99 4.61
100 101 2.672760 CGTGTATCGTTGTGATGGGTGA 60.673 50.000 0.00 0.00 37.99 4.02
101 102 2.671396 GTGTATCGTTGTGATGGGTGAC 59.329 50.000 0.00 0.00 37.99 3.67
102 103 2.300437 TGTATCGTTGTGATGGGTGACA 59.700 45.455 0.00 0.00 37.99 3.58
103 104 2.787473 ATCGTTGTGATGGGTGACAT 57.213 45.000 0.00 0.00 44.18 3.06
121 122 7.865706 GTGACATCACCTAAAATGGTTAGAT 57.134 36.000 0.18 0.00 40.85 1.98
122 123 8.281212 GTGACATCACCTAAAATGGTTAGATT 57.719 34.615 0.18 0.00 40.85 2.40
123 124 8.184192 GTGACATCACCTAAAATGGTTAGATTG 58.816 37.037 0.18 0.00 40.85 2.67
124 125 7.888021 TGACATCACCTAAAATGGTTAGATTGT 59.112 33.333 0.00 0.00 38.45 2.71
125 126 8.055279 ACATCACCTAAAATGGTTAGATTGTG 57.945 34.615 0.00 0.00 38.45 3.33
126 127 6.509418 TCACCTAAAATGGTTAGATTGTGC 57.491 37.500 0.00 0.00 38.45 4.57
127 128 6.007076 TCACCTAAAATGGTTAGATTGTGCA 58.993 36.000 0.00 0.00 38.45 4.57
128 129 6.491745 TCACCTAAAATGGTTAGATTGTGCAA 59.508 34.615 0.00 0.00 38.45 4.08
129 130 7.014711 TCACCTAAAATGGTTAGATTGTGCAAA 59.985 33.333 0.00 0.00 38.45 3.68
130 131 7.818930 CACCTAAAATGGTTAGATTGTGCAAAT 59.181 33.333 0.00 0.00 38.45 2.32
131 132 7.818930 ACCTAAAATGGTTAGATTGTGCAAATG 59.181 33.333 0.00 0.00 36.89 2.32
132 133 7.818930 CCTAAAATGGTTAGATTGTGCAAATGT 59.181 33.333 0.00 0.00 0.00 2.71
133 134 9.206870 CTAAAATGGTTAGATTGTGCAAATGTT 57.793 29.630 0.00 0.00 0.00 2.71
134 135 8.449251 AAAATGGTTAGATTGTGCAAATGTTT 57.551 26.923 0.00 0.00 0.00 2.83
135 136 7.656707 AATGGTTAGATTGTGCAAATGTTTC 57.343 32.000 0.00 0.00 0.00 2.78
136 137 6.154203 TGGTTAGATTGTGCAAATGTTTCA 57.846 33.333 0.00 0.00 0.00 2.69
137 138 6.577103 TGGTTAGATTGTGCAAATGTTTCAA 58.423 32.000 0.00 0.00 0.00 2.69
138 139 6.478344 TGGTTAGATTGTGCAAATGTTTCAAC 59.522 34.615 0.00 0.00 0.00 3.18
139 140 6.073819 GGTTAGATTGTGCAAATGTTTCAACC 60.074 38.462 0.00 0.00 0.00 3.77
140 141 4.379652 AGATTGTGCAAATGTTTCAACCC 58.620 39.130 0.00 0.00 0.00 4.11
141 142 3.616956 TTGTGCAAATGTTTCAACCCA 57.383 38.095 0.00 0.00 0.00 4.51
142 143 3.176552 TGTGCAAATGTTTCAACCCAG 57.823 42.857 0.00 0.00 0.00 4.45
143 144 2.762887 TGTGCAAATGTTTCAACCCAGA 59.237 40.909 0.00 0.00 0.00 3.86
144 145 3.123050 GTGCAAATGTTTCAACCCAGAC 58.877 45.455 0.00 0.00 0.00 3.51
145 146 3.030291 TGCAAATGTTTCAACCCAGACT 58.970 40.909 0.00 0.00 0.00 3.24
146 147 3.181477 TGCAAATGTTTCAACCCAGACTG 60.181 43.478 0.00 0.00 0.00 3.51
147 148 3.383761 CAAATGTTTCAACCCAGACTGC 58.616 45.455 0.00 0.00 0.00 4.40
148 149 2.363306 ATGTTTCAACCCAGACTGCA 57.637 45.000 0.00 0.00 0.00 4.41
149 150 2.136298 TGTTTCAACCCAGACTGCAA 57.864 45.000 0.00 0.00 0.00 4.08
150 151 2.023673 TGTTTCAACCCAGACTGCAAG 58.976 47.619 0.00 0.00 42.29 4.01
151 152 1.338020 GTTTCAACCCAGACTGCAAGG 59.662 52.381 0.00 0.00 39.30 3.61
157 158 2.514458 CCCAGACTGCAAGGGTTAAT 57.486 50.000 0.00 0.00 39.30 1.40
158 159 2.807676 CCCAGACTGCAAGGGTTAATT 58.192 47.619 0.00 0.00 39.30 1.40
159 160 2.755103 CCCAGACTGCAAGGGTTAATTC 59.245 50.000 0.00 0.00 39.30 2.17
160 161 3.420893 CCAGACTGCAAGGGTTAATTCA 58.579 45.455 0.00 0.00 39.30 2.57
161 162 4.019174 CCAGACTGCAAGGGTTAATTCAT 58.981 43.478 0.00 0.00 39.30 2.57
162 163 4.142315 CCAGACTGCAAGGGTTAATTCATG 60.142 45.833 0.00 0.00 39.30 3.07
163 164 3.445096 AGACTGCAAGGGTTAATTCATGC 59.555 43.478 0.00 0.00 39.30 4.06
164 165 3.434309 ACTGCAAGGGTTAATTCATGCT 58.566 40.909 8.77 0.00 39.30 3.79
165 166 3.834231 ACTGCAAGGGTTAATTCATGCTT 59.166 39.130 8.77 0.00 39.30 3.91
166 167 5.016173 ACTGCAAGGGTTAATTCATGCTTA 58.984 37.500 8.77 0.00 39.30 3.09
167 168 5.658190 ACTGCAAGGGTTAATTCATGCTTAT 59.342 36.000 8.77 0.00 39.30 1.73
168 169 6.833416 ACTGCAAGGGTTAATTCATGCTTATA 59.167 34.615 8.77 0.00 39.30 0.98
169 170 7.013655 ACTGCAAGGGTTAATTCATGCTTATAG 59.986 37.037 8.77 2.77 39.30 1.31
170 171 7.059788 TGCAAGGGTTAATTCATGCTTATAGA 58.940 34.615 8.77 0.00 34.97 1.98
171 172 7.559533 TGCAAGGGTTAATTCATGCTTATAGAA 59.440 33.333 8.77 0.00 34.97 2.10
172 173 8.413229 GCAAGGGTTAATTCATGCTTATAGAAA 58.587 33.333 0.00 0.00 0.00 2.52
173 174 9.956720 CAAGGGTTAATTCATGCTTATAGAAAG 57.043 33.333 0.00 0.00 0.00 2.62
174 175 9.920946 AAGGGTTAATTCATGCTTATAGAAAGA 57.079 29.630 0.00 0.00 0.00 2.52
184 185 9.453572 TCATGCTTATAGAAAGATCAAAACAGT 57.546 29.630 0.00 0.00 0.00 3.55
185 186 9.499585 CATGCTTATAGAAAGATCAAAACAGTG 57.500 33.333 0.00 0.00 0.00 3.66
186 187 8.044060 TGCTTATAGAAAGATCAAAACAGTGG 57.956 34.615 0.00 0.00 0.00 4.00
187 188 7.665559 TGCTTATAGAAAGATCAAAACAGTGGT 59.334 33.333 0.00 0.00 0.00 4.16
188 189 8.515414 GCTTATAGAAAGATCAAAACAGTGGTT 58.485 33.333 0.00 0.00 39.43 3.67
195 196 4.825377 AAACAGTGGTTTTGGCGC 57.175 50.000 0.00 0.00 44.63 6.53
196 197 1.893786 AAACAGTGGTTTTGGCGCA 59.106 47.368 10.83 0.00 44.63 6.09
197 198 0.247736 AAACAGTGGTTTTGGCGCAA 59.752 45.000 10.83 0.00 44.63 4.85
198 199 0.463620 AACAGTGGTTTTGGCGCAAT 59.536 45.000 10.83 0.00 31.83 3.56
199 200 0.031994 ACAGTGGTTTTGGCGCAATC 59.968 50.000 10.83 0.00 0.00 2.67
200 201 0.667184 CAGTGGTTTTGGCGCAATCC 60.667 55.000 10.83 5.13 0.00 3.01
201 202 1.732683 GTGGTTTTGGCGCAATCCG 60.733 57.895 10.83 0.00 40.75 4.18
202 203 2.196925 TGGTTTTGGCGCAATCCGT 61.197 52.632 10.83 0.00 39.71 4.69
203 204 1.443702 GGTTTTGGCGCAATCCGTC 60.444 57.895 10.83 0.00 43.18 4.79
208 209 4.118480 GGCGCAATCCGTCATACA 57.882 55.556 10.83 0.00 42.23 2.29
209 210 2.616969 GGCGCAATCCGTCATACAT 58.383 52.632 10.83 0.00 42.23 2.29
210 211 1.790755 GGCGCAATCCGTCATACATA 58.209 50.000 10.83 0.00 42.23 2.29
211 212 2.346803 GGCGCAATCCGTCATACATAT 58.653 47.619 10.83 0.00 42.23 1.78
212 213 3.517602 GGCGCAATCCGTCATACATATA 58.482 45.455 10.83 0.00 42.23 0.86
213 214 3.551890 GGCGCAATCCGTCATACATATAG 59.448 47.826 10.83 0.00 42.23 1.31
214 215 3.000322 GCGCAATCCGTCATACATATAGC 60.000 47.826 0.30 0.00 39.71 2.97
215 216 4.173256 CGCAATCCGTCATACATATAGCA 58.827 43.478 0.00 0.00 0.00 3.49
216 217 4.805719 CGCAATCCGTCATACATATAGCAT 59.194 41.667 0.00 0.00 0.00 3.79
217 218 5.276536 CGCAATCCGTCATACATATAGCATG 60.277 44.000 0.00 0.00 0.00 4.06
218 219 5.812127 GCAATCCGTCATACATATAGCATGA 59.188 40.000 0.00 0.00 0.00 3.07
219 220 6.019237 GCAATCCGTCATACATATAGCATGAG 60.019 42.308 0.00 0.00 30.70 2.90
220 221 6.782082 ATCCGTCATACATATAGCATGAGT 57.218 37.500 0.00 0.00 30.70 3.41
221 222 6.196079 TCCGTCATACATATAGCATGAGTC 57.804 41.667 0.00 0.00 30.70 3.36
222 223 5.946377 TCCGTCATACATATAGCATGAGTCT 59.054 40.000 0.00 0.00 30.70 3.24
223 224 7.110155 TCCGTCATACATATAGCATGAGTCTA 58.890 38.462 0.00 0.00 30.70 2.59
224 225 7.065923 TCCGTCATACATATAGCATGAGTCTAC 59.934 40.741 0.00 0.00 30.70 2.59
225 226 7.190191 CGTCATACATATAGCATGAGTCTACC 58.810 42.308 0.00 0.00 30.70 3.18
226 227 7.190191 GTCATACATATAGCATGAGTCTACCG 58.810 42.308 0.00 0.00 30.70 4.02
227 228 7.065923 GTCATACATATAGCATGAGTCTACCGA 59.934 40.741 0.00 0.00 30.70 4.69
228 229 5.630661 ACATATAGCATGAGTCTACCGAC 57.369 43.478 0.00 0.00 40.54 4.79
240 241 4.742438 GTCTACCGACTTGCAAAAATGA 57.258 40.909 0.00 0.00 37.19 2.57
241 242 5.103290 GTCTACCGACTTGCAAAAATGAA 57.897 39.130 0.00 0.00 37.19 2.57
242 243 5.516090 GTCTACCGACTTGCAAAAATGAAA 58.484 37.500 0.00 0.00 37.19 2.69
243 244 5.625311 GTCTACCGACTTGCAAAAATGAAAG 59.375 40.000 0.00 0.00 37.19 2.62
244 245 3.716601 ACCGACTTGCAAAAATGAAAGG 58.283 40.909 0.00 0.00 0.00 3.11
245 246 3.059166 CCGACTTGCAAAAATGAAAGGG 58.941 45.455 0.00 0.00 0.00 3.95
246 247 3.492482 CCGACTTGCAAAAATGAAAGGGT 60.492 43.478 0.00 0.00 0.00 4.34
247 248 4.119136 CGACTTGCAAAAATGAAAGGGTT 58.881 39.130 0.00 0.00 0.00 4.11
248 249 4.025813 CGACTTGCAAAAATGAAAGGGTTG 60.026 41.667 0.00 0.00 0.00 3.77
249 250 4.842574 ACTTGCAAAAATGAAAGGGTTGT 58.157 34.783 0.00 0.00 0.00 3.32
250 251 4.875536 ACTTGCAAAAATGAAAGGGTTGTC 59.124 37.500 0.00 0.00 0.00 3.18
251 252 4.478206 TGCAAAAATGAAAGGGTTGTCA 57.522 36.364 0.00 0.00 0.00 3.58
252 253 4.187694 TGCAAAAATGAAAGGGTTGTCAC 58.812 39.130 0.00 0.00 0.00 3.67
253 254 3.559655 GCAAAAATGAAAGGGTTGTCACC 59.440 43.478 0.00 0.00 43.37 4.02
261 262 4.265056 GGTTGTCACCCCCGCTGT 62.265 66.667 0.00 0.00 37.03 4.40
262 263 2.203294 GTTGTCACCCCCGCTGTT 60.203 61.111 0.00 0.00 0.00 3.16
263 264 1.826487 GTTGTCACCCCCGCTGTTT 60.826 57.895 0.00 0.00 0.00 2.83
264 265 1.527380 TTGTCACCCCCGCTGTTTC 60.527 57.895 0.00 0.00 0.00 2.78
265 266 3.047877 GTCACCCCCGCTGTTTCG 61.048 66.667 0.00 0.00 0.00 3.46
273 274 2.124901 CGCTGTTTCGGGGGCATA 60.125 61.111 0.00 0.00 0.00 3.14
274 275 1.525995 CGCTGTTTCGGGGGCATAT 60.526 57.895 0.00 0.00 0.00 1.78
275 276 1.101049 CGCTGTTTCGGGGGCATATT 61.101 55.000 0.00 0.00 0.00 1.28
276 277 1.111277 GCTGTTTCGGGGGCATATTT 58.889 50.000 0.00 0.00 0.00 1.40
277 278 1.202405 GCTGTTTCGGGGGCATATTTG 60.202 52.381 0.00 0.00 0.00 2.32
278 279 2.099405 CTGTTTCGGGGGCATATTTGT 58.901 47.619 0.00 0.00 0.00 2.83
279 280 1.821753 TGTTTCGGGGGCATATTTGTG 59.178 47.619 0.00 0.00 0.00 3.33
280 281 2.096248 GTTTCGGGGGCATATTTGTGA 58.904 47.619 0.00 0.00 0.00 3.58
281 282 1.757682 TTCGGGGGCATATTTGTGAC 58.242 50.000 0.00 0.00 0.00 3.67
282 283 0.621082 TCGGGGGCATATTTGTGACA 59.379 50.000 0.00 0.00 0.00 3.58
283 284 1.214175 TCGGGGGCATATTTGTGACAT 59.786 47.619 0.00 0.00 0.00 3.06
284 285 2.031120 CGGGGGCATATTTGTGACATT 58.969 47.619 0.00 0.00 0.00 2.71
285 286 2.034558 CGGGGGCATATTTGTGACATTC 59.965 50.000 0.00 0.00 0.00 2.67
286 287 2.034558 GGGGGCATATTTGTGACATTCG 59.965 50.000 0.00 0.00 0.00 3.34
287 288 2.034558 GGGGCATATTTGTGACATTCGG 59.965 50.000 0.00 0.00 0.00 4.30
288 289 2.687935 GGGCATATTTGTGACATTCGGT 59.312 45.455 0.00 0.00 0.00 4.69
289 290 3.880490 GGGCATATTTGTGACATTCGGTA 59.120 43.478 0.00 0.00 0.00 4.02
290 291 4.518970 GGGCATATTTGTGACATTCGGTAT 59.481 41.667 0.00 0.00 0.00 2.73
291 292 5.703592 GGGCATATTTGTGACATTCGGTATA 59.296 40.000 0.00 0.00 0.00 1.47
292 293 6.205853 GGGCATATTTGTGACATTCGGTATAA 59.794 38.462 0.00 0.00 0.00 0.98
293 294 7.255312 GGGCATATTTGTGACATTCGGTATAAA 60.255 37.037 0.00 0.00 0.00 1.40
294 295 8.132362 GGCATATTTGTGACATTCGGTATAAAA 58.868 33.333 0.00 0.00 0.00 1.52
295 296 9.169468 GCATATTTGTGACATTCGGTATAAAAG 57.831 33.333 0.00 0.00 0.00 2.27
296 297 9.169468 CATATTTGTGACATTCGGTATAAAAGC 57.831 33.333 0.00 0.00 0.00 3.51
297 298 6.561737 TTTGTGACATTCGGTATAAAAGCA 57.438 33.333 0.00 0.00 0.00 3.91
298 299 6.561737 TTGTGACATTCGGTATAAAAGCAA 57.438 33.333 0.00 0.00 0.00 3.91
299 300 6.176975 TGTGACATTCGGTATAAAAGCAAG 57.823 37.500 0.00 0.00 0.00 4.01
300 301 5.123186 TGTGACATTCGGTATAAAAGCAAGG 59.877 40.000 0.00 0.00 0.00 3.61
301 302 4.638421 TGACATTCGGTATAAAAGCAAGGG 59.362 41.667 0.00 0.00 0.00 3.95
302 303 3.951680 ACATTCGGTATAAAAGCAAGGGG 59.048 43.478 0.00 0.00 0.00 4.79
303 304 2.721425 TCGGTATAAAAGCAAGGGGG 57.279 50.000 0.00 0.00 0.00 5.40
304 305 1.917568 TCGGTATAAAAGCAAGGGGGT 59.082 47.619 0.00 0.00 0.00 4.95
305 306 2.309458 TCGGTATAAAAGCAAGGGGGTT 59.691 45.455 0.00 0.00 39.32 4.11
307 308 3.129813 CGGTATAAAAGCAAGGGGGTTTC 59.870 47.826 0.00 0.00 45.93 2.78
308 309 3.129813 GGTATAAAAGCAAGGGGGTTTCG 59.870 47.826 0.00 0.00 45.93 3.46
309 310 2.660670 TAAAAGCAAGGGGGTTTCGA 57.339 45.000 0.00 0.00 45.93 3.71
310 311 1.783071 AAAAGCAAGGGGGTTTCGAA 58.217 45.000 0.00 0.00 45.93 3.71
311 312 1.783071 AAAGCAAGGGGGTTTCGAAA 58.217 45.000 6.47 6.47 43.37 3.46
312 313 1.783071 AAGCAAGGGGGTTTCGAAAA 58.217 45.000 13.10 0.00 32.04 2.29
313 314 1.783071 AGCAAGGGGGTTTCGAAAAA 58.217 45.000 13.10 0.00 0.00 1.94
332 333 3.653835 AAAAATCCAGACTCTAGCCCC 57.346 47.619 0.00 0.00 0.00 5.80
333 334 2.270434 AAATCCAGACTCTAGCCCCA 57.730 50.000 0.00 0.00 0.00 4.96
334 335 1.501582 AATCCAGACTCTAGCCCCAC 58.498 55.000 0.00 0.00 0.00 4.61
335 336 0.399233 ATCCAGACTCTAGCCCCACC 60.399 60.000 0.00 0.00 0.00 4.61
336 337 2.066999 CCAGACTCTAGCCCCACCC 61.067 68.421 0.00 0.00 0.00 4.61
337 338 2.042843 AGACTCTAGCCCCACCCG 60.043 66.667 0.00 0.00 0.00 5.28
338 339 3.851128 GACTCTAGCCCCACCCGC 61.851 72.222 0.00 0.00 0.00 6.13
463 466 1.742761 AGGCATCAAAGTGGTCATCG 58.257 50.000 0.00 0.00 0.00 3.84
499 502 0.463833 CCACTGCGGTATTTCCCTCC 60.464 60.000 0.00 0.00 0.00 4.30
519 522 5.150342 TCCATTAAATCGTATGCACAACG 57.850 39.130 15.40 15.40 41.64 4.10
532 535 1.784283 GCACAACGGTTTTGTACATGC 59.216 47.619 8.63 0.00 0.00 4.06
559 562 2.092212 CCTATGGCCCACAATCTGAACT 60.092 50.000 0.00 0.00 0.00 3.01
573 576 4.601621 TCTGAACTTCTCTGATCGTACG 57.398 45.455 9.53 9.53 0.00 3.67
585 588 3.879682 CGTACGGGCGTCGGATGA 61.880 66.667 7.57 0.00 41.10 2.92
600 603 5.609088 GTCGGATGACAATTTATCGTATGC 58.391 41.667 0.00 0.00 44.82 3.14
618 2572 3.044235 TGCATAGCATCATTCTACCGG 57.956 47.619 0.00 0.00 31.71 5.28
619 2573 2.632512 TGCATAGCATCATTCTACCGGA 59.367 45.455 9.46 0.00 31.71 5.14
620 2574 3.070878 TGCATAGCATCATTCTACCGGAA 59.929 43.478 9.46 0.00 34.05 4.30
621 2575 4.065088 GCATAGCATCATTCTACCGGAAA 58.935 43.478 9.46 0.00 37.49 3.13
661 2620 7.417456 GGAATTAAAAACCTTGGTCTCAACTGT 60.417 37.037 0.00 0.00 0.00 3.55
662 2621 4.718940 AAAAACCTTGGTCTCAACTGTG 57.281 40.909 0.00 0.00 0.00 3.66
705 2664 0.457851 CGGAGGAGACAGACATCCAC 59.542 60.000 0.00 0.00 38.12 4.02
706 2665 1.561643 GGAGGAGACAGACATCCACA 58.438 55.000 0.00 0.00 38.12 4.17
707 2666 2.114616 GGAGGAGACAGACATCCACAT 58.885 52.381 0.00 0.00 38.12 3.21
708 2667 2.158986 GGAGGAGACAGACATCCACATG 60.159 54.545 0.00 0.00 38.12 3.21
710 2669 1.065926 GGAGACAGACATCCACATGCA 60.066 52.381 0.00 0.00 35.54 3.96
838 2807 0.683504 TAACTCGCCACCTCCCTCTC 60.684 60.000 0.00 0.00 0.00 3.20
856 2825 3.406595 CTGACGCATTCCCCCTCCC 62.407 68.421 0.00 0.00 0.00 4.30
1153 3127 0.179103 CGGTAATTAACCCGTCGCCT 60.179 55.000 6.40 0.00 46.62 5.52
1155 3129 1.203065 GTAATTAACCCGTCGCCTCG 58.797 55.000 0.00 0.00 0.00 4.63
1157 3131 3.728279 ATTAACCCGTCGCCTCGCC 62.728 63.158 0.00 0.00 0.00 5.54
1168 3142 4.457496 CCTCGCCGTCCTGTGCAT 62.457 66.667 0.00 0.00 0.00 3.96
1169 3143 3.190849 CTCGCCGTCCTGTGCATG 61.191 66.667 0.00 0.00 0.00 4.06
1215 3189 1.515521 GGTGTTGGTTTCCTGGCTCG 61.516 60.000 0.00 0.00 0.00 5.03
1216 3190 0.534203 GTGTTGGTTTCCTGGCTCGA 60.534 55.000 0.00 0.00 0.00 4.04
1217 3191 0.400213 TGTTGGTTTCCTGGCTCGAT 59.600 50.000 0.00 0.00 0.00 3.59
1218 3192 1.087501 GTTGGTTTCCTGGCTCGATC 58.912 55.000 0.00 0.00 0.00 3.69
1234 3208 4.804108 CTCGATCTGACTCTGTTTTCTGT 58.196 43.478 0.00 0.00 0.00 3.41
1394 3368 1.687493 CCTCTTCGGCTCCTCCCTT 60.687 63.158 0.00 0.00 0.00 3.95
1492 3481 2.954868 CGCCGTCGCCTACATCAC 60.955 66.667 0.00 0.00 0.00 3.06
2648 4640 4.796231 ATCGACACCAGCGCCGAC 62.796 66.667 2.29 0.00 33.69 4.79
2759 4775 0.935898 CAGAATCAGATCGGTGCAGC 59.064 55.000 5.64 5.64 0.00 5.25
2760 4776 0.538584 AGAATCAGATCGGTGCAGCA 59.461 50.000 17.33 3.54 0.00 4.41
2761 4777 0.935898 GAATCAGATCGGTGCAGCAG 59.064 55.000 17.33 8.96 0.00 4.24
2763 4779 2.937379 ATCAGATCGGTGCAGCAGGC 62.937 60.000 17.33 3.74 45.13 4.85
2764 4780 3.397439 AGATCGGTGCAGCAGGCT 61.397 61.111 17.33 6.15 45.15 4.58
2765 4781 3.200593 GATCGGTGCAGCAGGCTG 61.201 66.667 17.33 16.68 45.15 4.85
2766 4782 3.670637 GATCGGTGCAGCAGGCTGA 62.671 63.158 24.46 4.75 46.30 4.26
2767 4783 2.937379 GATCGGTGCAGCAGGCTGAT 62.937 60.000 24.46 9.84 46.30 2.90
2768 4784 2.547640 ATCGGTGCAGCAGGCTGATT 62.548 55.000 24.46 1.82 46.30 2.57
2769 4785 2.758089 CGGTGCAGCAGGCTGATTC 61.758 63.158 24.46 7.17 46.30 2.52
2770 4786 2.758089 GGTGCAGCAGGCTGATTCG 61.758 63.158 24.46 1.49 46.30 3.34
2771 4787 2.037136 GTGCAGCAGGCTGATTCGT 61.037 57.895 24.46 0.00 46.30 3.85
2772 4788 1.742880 TGCAGCAGGCTGATTCGTC 60.743 57.895 24.46 6.43 46.30 4.20
2773 4789 2.806856 GCAGCAGGCTGATTCGTCG 61.807 63.158 24.46 0.00 46.30 5.12
2774 4790 1.153765 CAGCAGGCTGATTCGTCGA 60.154 57.895 20.86 0.00 46.30 4.20
2775 4791 1.153745 AGCAGGCTGATTCGTCGAC 60.154 57.895 20.86 5.18 0.00 4.20
2776 4792 2.508891 GCAGGCTGATTCGTCGACG 61.509 63.158 31.30 31.30 41.45 5.12
2777 4793 1.154016 CAGGCTGATTCGTCGACGT 60.154 57.895 34.40 19.15 40.80 4.34
2778 4794 0.098200 CAGGCTGATTCGTCGACGTA 59.902 55.000 34.40 27.34 40.80 3.57
2779 4795 0.377554 AGGCTGATTCGTCGACGTAG 59.622 55.000 34.40 26.41 40.80 3.51
2780 4796 1.201098 GGCTGATTCGTCGACGTAGC 61.201 60.000 34.40 32.23 40.80 3.58
2781 4797 0.248134 GCTGATTCGTCGACGTAGCT 60.248 55.000 34.40 18.68 40.80 3.32
2782 4798 1.004185 GCTGATTCGTCGACGTAGCTA 60.004 52.381 34.40 18.26 40.80 3.32
2783 4799 2.893837 CTGATTCGTCGACGTAGCTAG 58.106 52.381 34.40 22.60 40.80 3.42
2784 4800 1.004185 TGATTCGTCGACGTAGCTAGC 60.004 52.381 34.40 19.15 40.80 3.42
2785 4801 0.307146 ATTCGTCGACGTAGCTAGCC 59.693 55.000 34.40 0.00 40.80 3.93
2786 4802 1.020861 TTCGTCGACGTAGCTAGCCA 61.021 55.000 34.40 11.86 40.80 4.75
2787 4803 1.020861 TCGTCGACGTAGCTAGCCAA 61.021 55.000 34.40 11.09 40.80 4.52
2788 4804 0.029035 CGTCGACGTAGCTAGCCAAT 59.971 55.000 29.08 0.00 34.11 3.16
2789 4805 1.478137 GTCGACGTAGCTAGCCAATG 58.522 55.000 12.13 8.22 0.00 2.82
2790 4806 0.384309 TCGACGTAGCTAGCCAATGG 59.616 55.000 12.13 0.00 0.00 3.16
2791 4807 0.384309 CGACGTAGCTAGCCAATGGA 59.616 55.000 12.13 0.00 0.00 3.41
2792 4808 1.854227 GACGTAGCTAGCCAATGGAC 58.146 55.000 12.13 0.00 0.00 4.02
2793 4809 1.409427 GACGTAGCTAGCCAATGGACT 59.591 52.381 12.13 2.11 0.00 3.85
2794 4810 1.409427 ACGTAGCTAGCCAATGGACTC 59.591 52.381 12.13 0.00 0.00 3.36
2795 4811 1.409064 CGTAGCTAGCCAATGGACTCA 59.591 52.381 12.13 0.00 0.00 3.41
2796 4812 2.036475 CGTAGCTAGCCAATGGACTCAT 59.964 50.000 12.13 0.00 34.56 2.90
2797 4813 2.634815 AGCTAGCCAATGGACTCATG 57.365 50.000 12.13 0.00 33.18 3.07
2798 4814 1.142465 AGCTAGCCAATGGACTCATGG 59.858 52.381 12.13 0.00 33.18 3.66
2830 4846 0.320421 TTACCCAGCTGACAAGACGC 60.320 55.000 17.39 0.00 0.00 5.19
2840 4856 3.111838 CTGACAAGACGCACATAGCTAG 58.888 50.000 0.00 0.00 42.61 3.42
2841 4857 2.752903 TGACAAGACGCACATAGCTAGA 59.247 45.455 0.00 0.00 42.61 2.43
2842 4858 3.381590 TGACAAGACGCACATAGCTAGAT 59.618 43.478 0.00 0.00 42.61 1.98
2843 4859 3.971150 ACAAGACGCACATAGCTAGATC 58.029 45.455 0.00 0.00 42.61 2.75
2874 4890 5.530171 AGAAATTGATTACGCATGCTCATCT 59.470 36.000 17.13 9.37 0.00 2.90
2875 4891 5.354054 AATTGATTACGCATGCTCATCTC 57.646 39.130 17.13 6.66 0.00 2.75
2907 4923 6.529125 CCAGCAAGCTAAATTAGTTGATGTTG 59.471 38.462 20.60 12.11 34.50 3.33
2955 4971 9.317936 TCTTAGCATACACTCATCTTGTAATTG 57.682 33.333 0.00 0.00 33.22 2.32
2971 4988 7.489757 TCTTGTAATTGTTTTCCCTTTGTTTCG 59.510 33.333 0.00 0.00 0.00 3.46
3035 5083 2.205074 CAATCTCACTACATGGTCGCC 58.795 52.381 0.00 0.00 0.00 5.54
3081 5129 5.975988 ACCATAATAGGTTCTCACATGGT 57.024 39.130 0.00 0.00 39.34 3.55
3083 5131 7.446106 ACCATAATAGGTTCTCACATGGTAA 57.554 36.000 0.00 0.00 42.10 2.85
3084 5132 7.280356 ACCATAATAGGTTCTCACATGGTAAC 58.720 38.462 0.00 0.00 42.10 2.50
3099 5147 4.418013 TGGTAACATCAAAACGCTCATG 57.582 40.909 0.00 0.00 46.17 3.07
3100 5148 3.190327 TGGTAACATCAAAACGCTCATGG 59.810 43.478 0.00 0.00 46.17 3.66
3101 5149 2.352503 AACATCAAAACGCTCATGGC 57.647 45.000 0.00 0.00 37.64 4.40
3231 5279 2.040544 AGCAGCCGCGCTAAAATGT 61.041 52.632 5.56 0.00 45.49 2.71
3307 5368 8.318412 TCTACAAACTAGAAATGTAGGCATTGA 58.682 33.333 22.25 9.25 43.89 2.57
3320 5384 8.757982 ATGTAGGCATTGAAAAGATAGATTGT 57.242 30.769 0.00 0.00 29.54 2.71
3450 5528 7.122501 ACTCTAAGTCGCTATCATCATCATCAT 59.877 37.037 0.00 0.00 0.00 2.45
3607 5685 4.373116 GTCCAACCGCTCCTCGCA 62.373 66.667 0.00 0.00 39.08 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.673333 TGCTGACATAACACGCAGGG 60.673 55.000 0.00 0.00 0.00 4.45
1 2 1.063027 CATGCTGACATAACACGCAGG 59.937 52.381 0.00 0.00 33.67 4.85
4 5 1.731709 TGACATGCTGACATAACACGC 59.268 47.619 0.00 0.00 33.67 5.34
5 6 3.721791 CGTTGACATGCTGACATAACACG 60.722 47.826 0.00 0.00 33.67 4.49
6 7 3.431912 TCGTTGACATGCTGACATAACAC 59.568 43.478 0.00 0.00 33.67 3.32
7 8 3.658709 TCGTTGACATGCTGACATAACA 58.341 40.909 0.00 0.00 33.67 2.41
8 9 3.926527 TCTCGTTGACATGCTGACATAAC 59.073 43.478 0.00 0.00 33.67 1.89
9 10 4.176271 CTCTCGTTGACATGCTGACATAA 58.824 43.478 0.00 0.00 33.67 1.90
10 11 3.193479 ACTCTCGTTGACATGCTGACATA 59.807 43.478 0.00 0.00 33.67 2.29
11 12 2.028658 ACTCTCGTTGACATGCTGACAT 60.029 45.455 0.00 0.00 36.79 3.06
12 13 1.341209 ACTCTCGTTGACATGCTGACA 59.659 47.619 0.00 0.00 0.00 3.58
13 14 1.723542 CACTCTCGTTGACATGCTGAC 59.276 52.381 0.00 0.00 0.00 3.51
14 15 1.341209 ACACTCTCGTTGACATGCTGA 59.659 47.619 0.00 0.00 0.00 4.26
15 16 1.723542 GACACTCTCGTTGACATGCTG 59.276 52.381 0.00 0.00 0.00 4.41
16 17 1.337260 GGACACTCTCGTTGACATGCT 60.337 52.381 0.00 0.00 0.00 3.79
17 18 1.071605 GGACACTCTCGTTGACATGC 58.928 55.000 0.00 0.00 0.00 4.06
18 19 1.000843 TGGGACACTCTCGTTGACATG 59.999 52.381 0.00 0.00 0.00 3.21
19 20 1.338107 TGGGACACTCTCGTTGACAT 58.662 50.000 0.00 0.00 0.00 3.06
20 21 1.116308 TTGGGACACTCTCGTTGACA 58.884 50.000 0.00 0.00 39.29 3.58
21 22 2.069273 CATTGGGACACTCTCGTTGAC 58.931 52.381 0.00 0.00 39.29 3.18
22 23 1.691976 ACATTGGGACACTCTCGTTGA 59.308 47.619 0.00 0.00 39.29 3.18
23 24 1.800586 CACATTGGGACACTCTCGTTG 59.199 52.381 0.00 0.00 39.29 4.10
24 25 1.270839 CCACATTGGGACACTCTCGTT 60.271 52.381 0.00 0.00 39.29 3.85
25 26 0.321671 CCACATTGGGACACTCTCGT 59.678 55.000 0.00 0.00 39.29 4.18
26 27 3.143675 CCACATTGGGACACTCTCG 57.856 57.895 0.00 0.00 39.29 4.04
37 38 2.388890 TTTTTGCCCGGCCCACATTG 62.389 55.000 7.03 0.00 0.00 2.82
38 39 2.143419 TTTTTGCCCGGCCCACATT 61.143 52.632 7.03 0.00 0.00 2.71
39 40 2.525381 TTTTTGCCCGGCCCACAT 60.525 55.556 7.03 0.00 0.00 3.21
40 41 3.541713 GTTTTTGCCCGGCCCACA 61.542 61.111 7.03 0.00 0.00 4.17
41 42 4.656117 CGTTTTTGCCCGGCCCAC 62.656 66.667 7.03 0.00 0.00 4.61
50 51 1.947146 GGGTCAACGGCGTTTTTGC 60.947 57.895 24.49 12.67 0.00 3.68
51 52 1.299544 GGGGTCAACGGCGTTTTTG 60.300 57.895 24.49 13.55 0.00 2.44
52 53 2.836793 CGGGGTCAACGGCGTTTTT 61.837 57.895 24.49 0.00 0.00 1.94
53 54 3.281395 CGGGGTCAACGGCGTTTT 61.281 61.111 24.49 0.00 0.00 2.43
54 55 4.238654 TCGGGGTCAACGGCGTTT 62.239 61.111 24.49 5.66 0.00 3.60
55 56 4.974989 GTCGGGGTCAACGGCGTT 62.975 66.667 21.19 21.19 0.00 4.84
59 60 3.621892 GAGACGTCGGGGTCAACGG 62.622 68.421 10.46 0.00 42.99 4.44
60 61 2.126580 GAGACGTCGGGGTCAACG 60.127 66.667 10.46 0.47 44.22 4.10
61 62 1.212229 GAGAGACGTCGGGGTCAAC 59.788 63.158 10.46 0.00 39.42 3.18
62 63 2.330372 CGAGAGACGTCGGGGTCAA 61.330 63.158 10.46 0.00 39.42 3.18
63 64 2.745100 CGAGAGACGTCGGGGTCA 60.745 66.667 10.46 0.00 39.42 4.02
70 71 7.631435 ATCACAACGATACACGAGAGACGTC 62.631 48.000 7.70 7.70 42.58 4.34
71 72 5.913766 ATCACAACGATACACGAGAGACGT 61.914 45.833 0.00 0.00 44.22 4.34
72 73 2.159747 TCACAACGATACACGAGAGACG 60.160 50.000 0.00 0.00 45.77 4.18
73 74 3.466712 TCACAACGATACACGAGAGAC 57.533 47.619 0.00 0.00 45.77 3.36
74 75 3.181500 CCATCACAACGATACACGAGAGA 60.181 47.826 0.00 0.00 45.77 3.10
75 76 3.108881 CCATCACAACGATACACGAGAG 58.891 50.000 0.00 0.00 45.77 3.20
76 77 2.159296 CCCATCACAACGATACACGAGA 60.159 50.000 0.00 0.00 45.77 4.04
77 78 2.193447 CCCATCACAACGATACACGAG 58.807 52.381 0.00 0.00 45.77 4.18
78 79 1.546923 ACCCATCACAACGATACACGA 59.453 47.619 0.00 0.00 45.77 4.35
80 81 2.671396 GTCACCCATCACAACGATACAC 59.329 50.000 0.00 0.00 31.20 2.90
81 82 2.300437 TGTCACCCATCACAACGATACA 59.700 45.455 0.00 0.00 31.20 2.29
82 83 2.967362 TGTCACCCATCACAACGATAC 58.033 47.619 0.00 0.00 31.20 2.24
83 84 3.904800 ATGTCACCCATCACAACGATA 57.095 42.857 0.00 0.00 31.20 2.92
84 85 2.787473 ATGTCACCCATCACAACGAT 57.213 45.000 0.00 0.00 33.27 3.73
97 98 7.865706 ATCTAACCATTTTAGGTGATGTCAC 57.134 36.000 4.58 4.58 42.25 3.67
98 99 7.888021 ACAATCTAACCATTTTAGGTGATGTCA 59.112 33.333 0.00 0.00 42.25 3.58
99 100 8.184192 CACAATCTAACCATTTTAGGTGATGTC 58.816 37.037 0.00 0.00 42.25 3.06
100 101 7.362920 GCACAATCTAACCATTTTAGGTGATGT 60.363 37.037 0.00 0.00 42.25 3.06
101 102 6.974622 GCACAATCTAACCATTTTAGGTGATG 59.025 38.462 0.00 0.00 42.25 3.07
102 103 6.663093 TGCACAATCTAACCATTTTAGGTGAT 59.337 34.615 0.00 0.00 42.25 3.06
103 104 6.007076 TGCACAATCTAACCATTTTAGGTGA 58.993 36.000 0.00 0.00 42.25 4.02
104 105 6.266168 TGCACAATCTAACCATTTTAGGTG 57.734 37.500 0.00 0.00 42.25 4.00
105 106 6.909550 TTGCACAATCTAACCATTTTAGGT 57.090 33.333 0.00 0.00 45.91 3.08
106 107 7.818930 ACATTTGCACAATCTAACCATTTTAGG 59.181 33.333 0.00 0.00 0.00 2.69
107 108 8.761575 ACATTTGCACAATCTAACCATTTTAG 57.238 30.769 0.00 0.00 0.00 1.85
108 109 9.553064 AAACATTTGCACAATCTAACCATTTTA 57.447 25.926 0.00 0.00 0.00 1.52
109 110 8.449251 AAACATTTGCACAATCTAACCATTTT 57.551 26.923 0.00 0.00 0.00 1.82
110 111 7.714377 TGAAACATTTGCACAATCTAACCATTT 59.286 29.630 0.00 0.00 0.00 2.32
111 112 7.215789 TGAAACATTTGCACAATCTAACCATT 58.784 30.769 0.00 0.00 0.00 3.16
112 113 6.757237 TGAAACATTTGCACAATCTAACCAT 58.243 32.000 0.00 0.00 0.00 3.55
113 114 6.154203 TGAAACATTTGCACAATCTAACCA 57.846 33.333 0.00 0.00 0.00 3.67
114 115 6.073819 GGTTGAAACATTTGCACAATCTAACC 60.074 38.462 0.00 0.00 0.00 2.85
115 116 6.073819 GGGTTGAAACATTTGCACAATCTAAC 60.074 38.462 0.00 0.00 0.00 2.34
116 117 5.988561 GGGTTGAAACATTTGCACAATCTAA 59.011 36.000 0.00 0.00 0.00 2.10
117 118 5.069648 TGGGTTGAAACATTTGCACAATCTA 59.930 36.000 0.00 0.00 0.00 1.98
118 119 4.141756 TGGGTTGAAACATTTGCACAATCT 60.142 37.500 0.00 0.00 0.00 2.40
119 120 4.125703 TGGGTTGAAACATTTGCACAATC 58.874 39.130 0.00 0.00 0.00 2.67
120 121 4.128643 CTGGGTTGAAACATTTGCACAAT 58.871 39.130 0.00 0.00 0.00 2.71
121 122 3.196469 TCTGGGTTGAAACATTTGCACAA 59.804 39.130 0.00 0.00 0.00 3.33
122 123 2.762887 TCTGGGTTGAAACATTTGCACA 59.237 40.909 0.00 0.00 0.00 4.57
123 124 3.123050 GTCTGGGTTGAAACATTTGCAC 58.877 45.455 0.00 0.00 0.00 4.57
124 125 3.030291 AGTCTGGGTTGAAACATTTGCA 58.970 40.909 0.00 0.00 0.00 4.08
125 126 3.383761 CAGTCTGGGTTGAAACATTTGC 58.616 45.455 0.00 0.00 0.00 3.68
126 127 3.181477 TGCAGTCTGGGTTGAAACATTTG 60.181 43.478 1.14 0.00 0.00 2.32
127 128 3.030291 TGCAGTCTGGGTTGAAACATTT 58.970 40.909 1.14 0.00 0.00 2.32
128 129 2.665165 TGCAGTCTGGGTTGAAACATT 58.335 42.857 1.14 0.00 0.00 2.71
129 130 2.363306 TGCAGTCTGGGTTGAAACAT 57.637 45.000 1.14 0.00 0.00 2.71
130 131 2.023673 CTTGCAGTCTGGGTTGAAACA 58.976 47.619 1.14 0.00 0.00 2.83
131 132 1.338020 CCTTGCAGTCTGGGTTGAAAC 59.662 52.381 1.14 0.00 0.00 2.78
132 133 1.691196 CCTTGCAGTCTGGGTTGAAA 58.309 50.000 1.14 0.00 0.00 2.69
133 134 0.178992 CCCTTGCAGTCTGGGTTGAA 60.179 55.000 1.14 0.00 36.32 2.69
134 135 1.455849 CCCTTGCAGTCTGGGTTGA 59.544 57.895 1.14 0.00 36.32 3.18
135 136 4.085876 CCCTTGCAGTCTGGGTTG 57.914 61.111 1.14 0.00 36.32 3.77
138 139 2.514458 ATTAACCCTTGCAGTCTGGG 57.486 50.000 12.62 12.62 46.07 4.45
139 140 3.420893 TGAATTAACCCTTGCAGTCTGG 58.579 45.455 1.14 0.00 0.00 3.86
140 141 4.676196 GCATGAATTAACCCTTGCAGTCTG 60.676 45.833 0.00 0.00 34.72 3.51
141 142 3.445096 GCATGAATTAACCCTTGCAGTCT 59.555 43.478 0.00 0.00 34.72 3.24
142 143 3.445096 AGCATGAATTAACCCTTGCAGTC 59.555 43.478 14.79 0.00 36.34 3.51
143 144 3.434309 AGCATGAATTAACCCTTGCAGT 58.566 40.909 14.79 0.00 36.34 4.40
144 145 4.460948 AAGCATGAATTAACCCTTGCAG 57.539 40.909 14.79 0.00 36.34 4.41
145 146 7.059788 TCTATAAGCATGAATTAACCCTTGCA 58.940 34.615 14.79 0.00 36.34 4.08
146 147 7.510549 TCTATAAGCATGAATTAACCCTTGC 57.489 36.000 0.00 8.05 34.77 4.01
147 148 9.956720 CTTTCTATAAGCATGAATTAACCCTTG 57.043 33.333 0.00 0.00 0.00 3.61
148 149 9.920946 TCTTTCTATAAGCATGAATTAACCCTT 57.079 29.630 0.00 0.00 0.00 3.95
158 159 9.453572 ACTGTTTTGATCTTTCTATAAGCATGA 57.546 29.630 0.00 0.00 0.00 3.07
159 160 9.499585 CACTGTTTTGATCTTTCTATAAGCATG 57.500 33.333 0.00 0.00 0.00 4.06
160 161 8.680903 CCACTGTTTTGATCTTTCTATAAGCAT 58.319 33.333 0.00 0.00 0.00 3.79
161 162 7.665559 ACCACTGTTTTGATCTTTCTATAAGCA 59.334 33.333 0.00 0.00 0.00 3.91
162 163 8.045176 ACCACTGTTTTGATCTTTCTATAAGC 57.955 34.615 0.00 0.00 0.00 3.09
178 179 0.247736 TTGCGCCAAAACCACTGTTT 59.752 45.000 4.18 0.00 46.50 2.83
179 180 0.463620 ATTGCGCCAAAACCACTGTT 59.536 45.000 4.18 0.00 35.82 3.16
180 181 0.031994 GATTGCGCCAAAACCACTGT 59.968 50.000 4.18 0.00 0.00 3.55
181 182 0.667184 GGATTGCGCCAAAACCACTG 60.667 55.000 4.18 0.00 0.00 3.66
182 183 1.665442 GGATTGCGCCAAAACCACT 59.335 52.632 4.18 0.00 0.00 4.00
183 184 1.732683 CGGATTGCGCCAAAACCAC 60.733 57.895 4.18 0.00 0.00 4.16
184 185 2.136196 GACGGATTGCGCCAAAACCA 62.136 55.000 4.18 0.00 0.00 3.67
185 186 1.443702 GACGGATTGCGCCAAAACC 60.444 57.895 4.18 0.05 0.00 3.27
186 187 0.109319 ATGACGGATTGCGCCAAAAC 60.109 50.000 4.18 0.00 0.00 2.43
187 188 1.131504 GTATGACGGATTGCGCCAAAA 59.868 47.619 4.18 0.00 0.00 2.44
188 189 0.730265 GTATGACGGATTGCGCCAAA 59.270 50.000 4.18 0.00 0.00 3.28
189 190 0.391793 TGTATGACGGATTGCGCCAA 60.392 50.000 4.18 0.00 0.00 4.52
190 191 0.179059 ATGTATGACGGATTGCGCCA 60.179 50.000 4.18 0.00 0.00 5.69
191 192 1.790755 TATGTATGACGGATTGCGCC 58.209 50.000 4.18 0.00 0.00 6.53
192 193 3.000322 GCTATATGTATGACGGATTGCGC 60.000 47.826 0.00 0.00 0.00 6.09
193 194 4.173256 TGCTATATGTATGACGGATTGCG 58.827 43.478 0.00 0.00 0.00 4.85
194 195 5.812127 TCATGCTATATGTATGACGGATTGC 59.188 40.000 0.00 0.00 41.66 3.56
195 196 7.038048 ACTCATGCTATATGTATGACGGATTG 58.962 38.462 0.00 0.00 41.66 2.67
196 197 7.123397 AGACTCATGCTATATGTATGACGGATT 59.877 37.037 0.00 0.00 41.66 3.01
197 198 6.605194 AGACTCATGCTATATGTATGACGGAT 59.395 38.462 0.00 0.00 41.66 4.18
198 199 5.946377 AGACTCATGCTATATGTATGACGGA 59.054 40.000 0.00 0.00 41.66 4.69
199 200 6.201226 AGACTCATGCTATATGTATGACGG 57.799 41.667 0.00 0.00 41.66 4.79
200 201 7.190191 GGTAGACTCATGCTATATGTATGACG 58.810 42.308 0.00 0.00 41.66 4.35
201 202 7.065923 TCGGTAGACTCATGCTATATGTATGAC 59.934 40.741 0.00 0.00 41.66 3.06
202 203 7.065923 GTCGGTAGACTCATGCTATATGTATGA 59.934 40.741 0.00 0.00 43.55 2.15
203 204 7.190191 GTCGGTAGACTCATGCTATATGTATG 58.810 42.308 0.00 0.00 43.80 2.39
204 205 7.323049 GTCGGTAGACTCATGCTATATGTAT 57.677 40.000 0.00 0.00 43.80 2.29
205 206 6.738832 GTCGGTAGACTCATGCTATATGTA 57.261 41.667 0.00 0.00 43.80 2.29
206 207 5.630661 GTCGGTAGACTCATGCTATATGT 57.369 43.478 0.00 0.00 43.80 2.29
220 221 5.278266 CCTTTCATTTTTGCAAGTCGGTAGA 60.278 40.000 0.00 0.00 0.00 2.59
221 222 4.917415 CCTTTCATTTTTGCAAGTCGGTAG 59.083 41.667 0.00 0.00 0.00 3.18
222 223 4.261825 CCCTTTCATTTTTGCAAGTCGGTA 60.262 41.667 0.00 0.00 0.00 4.02
223 224 3.492482 CCCTTTCATTTTTGCAAGTCGGT 60.492 43.478 0.00 0.00 0.00 4.69
224 225 3.059166 CCCTTTCATTTTTGCAAGTCGG 58.941 45.455 0.00 0.00 0.00 4.79
225 226 3.716601 ACCCTTTCATTTTTGCAAGTCG 58.283 40.909 0.00 0.00 0.00 4.18
226 227 4.875536 ACAACCCTTTCATTTTTGCAAGTC 59.124 37.500 0.00 0.00 0.00 3.01
227 228 4.842574 ACAACCCTTTCATTTTTGCAAGT 58.157 34.783 0.00 0.00 0.00 3.16
228 229 4.874966 TGACAACCCTTTCATTTTTGCAAG 59.125 37.500 0.00 0.00 0.00 4.01
229 230 4.633565 GTGACAACCCTTTCATTTTTGCAA 59.366 37.500 0.00 0.00 0.00 4.08
230 231 4.187694 GTGACAACCCTTTCATTTTTGCA 58.812 39.130 0.00 0.00 0.00 4.08
231 232 3.559655 GGTGACAACCCTTTCATTTTTGC 59.440 43.478 0.00 0.00 41.04 3.68
244 245 3.785122 AACAGCGGGGGTGACAACC 62.785 63.158 0.00 0.00 46.81 3.77
245 246 1.792118 GAAACAGCGGGGGTGACAAC 61.792 60.000 1.38 0.00 34.87 3.32
246 247 1.527380 GAAACAGCGGGGGTGACAA 60.527 57.895 1.38 0.00 34.87 3.18
247 248 2.112297 GAAACAGCGGGGGTGACA 59.888 61.111 1.38 0.00 34.87 3.58
248 249 3.047877 CGAAACAGCGGGGGTGAC 61.048 66.667 1.38 0.00 34.87 3.67
256 257 1.101049 AATATGCCCCCGAAACAGCG 61.101 55.000 0.00 0.00 0.00 5.18
257 258 1.111277 AAATATGCCCCCGAAACAGC 58.889 50.000 0.00 0.00 0.00 4.40
258 259 2.099405 ACAAATATGCCCCCGAAACAG 58.901 47.619 0.00 0.00 0.00 3.16
259 260 1.821753 CACAAATATGCCCCCGAAACA 59.178 47.619 0.00 0.00 0.00 2.83
260 261 2.096248 TCACAAATATGCCCCCGAAAC 58.904 47.619 0.00 0.00 0.00 2.78
261 262 2.096248 GTCACAAATATGCCCCCGAAA 58.904 47.619 0.00 0.00 0.00 3.46
262 263 1.004862 TGTCACAAATATGCCCCCGAA 59.995 47.619 0.00 0.00 0.00 4.30
263 264 0.621082 TGTCACAAATATGCCCCCGA 59.379 50.000 0.00 0.00 0.00 5.14
264 265 1.691196 ATGTCACAAATATGCCCCCG 58.309 50.000 0.00 0.00 0.00 5.73
265 266 2.034558 CGAATGTCACAAATATGCCCCC 59.965 50.000 0.00 0.00 0.00 5.40
266 267 2.034558 CCGAATGTCACAAATATGCCCC 59.965 50.000 0.00 0.00 0.00 5.80
267 268 2.687935 ACCGAATGTCACAAATATGCCC 59.312 45.455 0.00 0.00 0.00 5.36
268 269 5.689383 ATACCGAATGTCACAAATATGCC 57.311 39.130 0.00 0.00 0.00 4.40
269 270 9.169468 CTTTTATACCGAATGTCACAAATATGC 57.831 33.333 0.00 0.00 0.00 3.14
270 271 9.169468 GCTTTTATACCGAATGTCACAAATATG 57.831 33.333 0.00 0.00 0.00 1.78
271 272 8.898761 TGCTTTTATACCGAATGTCACAAATAT 58.101 29.630 0.00 0.00 0.00 1.28
272 273 8.270080 TGCTTTTATACCGAATGTCACAAATA 57.730 30.769 0.00 0.00 0.00 1.40
273 274 7.151999 TGCTTTTATACCGAATGTCACAAAT 57.848 32.000 0.00 0.00 0.00 2.32
274 275 6.561737 TGCTTTTATACCGAATGTCACAAA 57.438 33.333 0.00 0.00 0.00 2.83
275 276 6.348950 CCTTGCTTTTATACCGAATGTCACAA 60.349 38.462 0.00 0.00 0.00 3.33
276 277 5.123186 CCTTGCTTTTATACCGAATGTCACA 59.877 40.000 0.00 0.00 0.00 3.58
277 278 5.448632 CCCTTGCTTTTATACCGAATGTCAC 60.449 44.000 0.00 0.00 0.00 3.67
278 279 4.638421 CCCTTGCTTTTATACCGAATGTCA 59.362 41.667 0.00 0.00 0.00 3.58
279 280 4.036380 CCCCTTGCTTTTATACCGAATGTC 59.964 45.833 0.00 0.00 0.00 3.06
280 281 3.951680 CCCCTTGCTTTTATACCGAATGT 59.048 43.478 0.00 0.00 0.00 2.71
281 282 3.317993 CCCCCTTGCTTTTATACCGAATG 59.682 47.826 0.00 0.00 0.00 2.67
282 283 3.053170 ACCCCCTTGCTTTTATACCGAAT 60.053 43.478 0.00 0.00 0.00 3.34
283 284 2.309458 ACCCCCTTGCTTTTATACCGAA 59.691 45.455 0.00 0.00 0.00 4.30
284 285 1.917568 ACCCCCTTGCTTTTATACCGA 59.082 47.619 0.00 0.00 0.00 4.69
285 286 2.430248 ACCCCCTTGCTTTTATACCG 57.570 50.000 0.00 0.00 0.00 4.02
286 287 3.129813 CGAAACCCCCTTGCTTTTATACC 59.870 47.826 0.00 0.00 0.00 2.73
287 288 4.011698 TCGAAACCCCCTTGCTTTTATAC 58.988 43.478 0.00 0.00 0.00 1.47
288 289 4.304048 TCGAAACCCCCTTGCTTTTATA 57.696 40.909 0.00 0.00 0.00 0.98
289 290 3.163616 TCGAAACCCCCTTGCTTTTAT 57.836 42.857 0.00 0.00 0.00 1.40
290 291 2.660670 TCGAAACCCCCTTGCTTTTA 57.339 45.000 0.00 0.00 0.00 1.52
291 292 1.783071 TTCGAAACCCCCTTGCTTTT 58.217 45.000 0.00 0.00 0.00 2.27
292 293 1.783071 TTTCGAAACCCCCTTGCTTT 58.217 45.000 6.47 0.00 0.00 3.51
293 294 1.783071 TTTTCGAAACCCCCTTGCTT 58.217 45.000 10.79 0.00 0.00 3.91
294 295 1.783071 TTTTTCGAAACCCCCTTGCT 58.217 45.000 10.79 0.00 0.00 3.91
312 313 2.919602 TGGGGCTAGAGTCTGGATTTTT 59.080 45.455 7.84 0.00 0.00 1.94
313 314 2.239907 GTGGGGCTAGAGTCTGGATTTT 59.760 50.000 7.84 0.00 0.00 1.82
314 315 1.840635 GTGGGGCTAGAGTCTGGATTT 59.159 52.381 7.84 0.00 0.00 2.17
315 316 1.501582 GTGGGGCTAGAGTCTGGATT 58.498 55.000 7.84 0.00 0.00 3.01
316 317 0.399233 GGTGGGGCTAGAGTCTGGAT 60.399 60.000 7.84 0.00 0.00 3.41
317 318 1.001760 GGTGGGGCTAGAGTCTGGA 59.998 63.158 7.84 0.00 0.00 3.86
318 319 2.066999 GGGTGGGGCTAGAGTCTGG 61.067 68.421 1.86 0.00 0.00 3.86
319 320 2.427245 CGGGTGGGGCTAGAGTCTG 61.427 68.421 1.86 0.00 0.00 3.51
320 321 2.042843 CGGGTGGGGCTAGAGTCT 60.043 66.667 0.00 0.00 0.00 3.24
321 322 3.851128 GCGGGTGGGGCTAGAGTC 61.851 72.222 0.00 0.00 0.00 3.36
379 380 1.680105 GGTGCACATACGGTTCGTCG 61.680 60.000 20.43 0.00 41.54 5.12
463 466 2.422127 AGTGGTACAACAAGTTGCACAC 59.578 45.455 15.83 17.57 44.16 3.82
499 502 4.904116 ACCGTTGTGCATACGATTTAATG 58.096 39.130 21.34 8.67 41.33 1.90
532 535 3.328931 AGATTGTGGGCCATAGGATACAG 59.671 47.826 10.70 0.00 41.41 2.74
559 562 1.028330 ACGCCCGTACGATCAGAGAA 61.028 55.000 18.76 0.00 36.70 2.87
573 576 1.658994 TAAATTGTCATCCGACGCCC 58.341 50.000 0.00 0.00 45.80 6.13
600 603 4.692625 CCTTTCCGGTAGAATGATGCTATG 59.307 45.833 0.00 0.00 33.44 2.23
609 2563 3.377172 CGCAATTTCCTTTCCGGTAGAAT 59.623 43.478 0.00 0.00 33.44 2.40
617 2571 0.170339 CCGGTCGCAATTTCCTTTCC 59.830 55.000 0.00 0.00 0.00 3.13
618 2572 1.161843 TCCGGTCGCAATTTCCTTTC 58.838 50.000 0.00 0.00 0.00 2.62
619 2573 1.611519 TTCCGGTCGCAATTTCCTTT 58.388 45.000 0.00 0.00 0.00 3.11
620 2574 1.834188 ATTCCGGTCGCAATTTCCTT 58.166 45.000 0.00 0.00 0.00 3.36
621 2575 1.834188 AATTCCGGTCGCAATTTCCT 58.166 45.000 0.00 0.00 0.00 3.36
661 2620 1.525077 GGTCAACCACGGCTTCACA 60.525 57.895 0.00 0.00 35.64 3.58
662 2621 1.525077 TGGTCAACCACGGCTTCAC 60.525 57.895 0.00 0.00 42.01 3.18
764 2733 1.580942 GCAATGTCGGTGCATGTGT 59.419 52.632 0.00 0.00 41.80 3.72
838 2807 2.190578 GGAGGGGGAATGCGTCAG 59.809 66.667 0.00 0.00 0.00 3.51
1155 3129 3.136123 ATGCATGCACAGGACGGC 61.136 61.111 25.37 0.00 0.00 5.68
1171 3145 1.695242 CCCAATTACCCATGCATGCAT 59.305 47.619 27.46 27.46 37.08 3.96
1182 3156 1.616374 CAACACCCACACCCAATTACC 59.384 52.381 0.00 0.00 0.00 2.85
1215 3189 4.152045 CAGCACAGAAAACAGAGTCAGATC 59.848 45.833 0.00 0.00 0.00 2.75
1216 3190 4.063689 CAGCACAGAAAACAGAGTCAGAT 58.936 43.478 0.00 0.00 0.00 2.90
1217 3191 3.461061 CAGCACAGAAAACAGAGTCAGA 58.539 45.455 0.00 0.00 0.00 3.27
1218 3192 2.547211 CCAGCACAGAAAACAGAGTCAG 59.453 50.000 0.00 0.00 0.00 3.51
1787 3776 4.129148 GGGGTGTCTGGGATGGCC 62.129 72.222 0.00 0.00 0.00 5.36
2714 4706 2.787994 CCTACCGATGTATACCTCCGT 58.212 52.381 0.00 4.14 0.00 4.69
2759 4775 0.098200 TACGTCGACGAATCAGCCTG 59.902 55.000 41.52 11.46 43.02 4.85
2760 4776 0.377554 CTACGTCGACGAATCAGCCT 59.622 55.000 41.52 20.54 43.02 4.58
2761 4777 1.201098 GCTACGTCGACGAATCAGCC 61.201 60.000 41.52 21.77 43.02 4.85
2763 4779 2.893837 CTAGCTACGTCGACGAATCAG 58.106 52.381 41.52 29.19 43.02 2.90
2764 4780 1.004185 GCTAGCTACGTCGACGAATCA 60.004 52.381 41.52 22.07 43.02 2.57
2765 4781 1.659771 GGCTAGCTACGTCGACGAATC 60.660 57.143 41.52 27.02 43.02 2.52
2766 4782 0.307146 GGCTAGCTACGTCGACGAAT 59.693 55.000 41.52 24.25 43.02 3.34
2767 4783 1.020861 TGGCTAGCTACGTCGACGAA 61.021 55.000 41.52 20.06 43.02 3.85
2768 4784 1.020861 TTGGCTAGCTACGTCGACGA 61.021 55.000 41.52 24.16 43.02 4.20
2769 4785 0.029035 ATTGGCTAGCTACGTCGACG 59.971 55.000 34.58 34.58 46.33 5.12
2770 4786 1.478137 CATTGGCTAGCTACGTCGAC 58.522 55.000 15.72 5.18 0.00 4.20
2771 4787 0.384309 CCATTGGCTAGCTACGTCGA 59.616 55.000 15.72 0.00 0.00 4.20
2772 4788 0.384309 TCCATTGGCTAGCTACGTCG 59.616 55.000 15.72 0.00 0.00 5.12
2773 4789 1.409427 AGTCCATTGGCTAGCTACGTC 59.591 52.381 15.72 0.00 0.00 4.34
2774 4790 1.409427 GAGTCCATTGGCTAGCTACGT 59.591 52.381 15.72 0.00 0.00 3.57
2775 4791 1.409064 TGAGTCCATTGGCTAGCTACG 59.591 52.381 15.72 2.00 0.00 3.51
2776 4792 3.397482 CATGAGTCCATTGGCTAGCTAC 58.603 50.000 15.72 0.00 0.00 3.58
2777 4793 2.369860 CCATGAGTCCATTGGCTAGCTA 59.630 50.000 15.72 5.44 0.00 3.32
2778 4794 1.142465 CCATGAGTCCATTGGCTAGCT 59.858 52.381 15.72 0.00 0.00 3.32
2779 4795 1.602311 CCATGAGTCCATTGGCTAGC 58.398 55.000 6.04 6.04 0.00 3.42
2780 4796 1.134007 TGCCATGAGTCCATTGGCTAG 60.134 52.381 22.20 0.00 42.36 3.42
2781 4797 0.918258 TGCCATGAGTCCATTGGCTA 59.082 50.000 22.20 11.21 42.36 3.93
2782 4798 0.682209 GTGCCATGAGTCCATTGGCT 60.682 55.000 22.20 0.00 42.36 4.75
2783 4799 1.811860 GTGCCATGAGTCCATTGGC 59.188 57.895 17.54 17.54 42.29 4.52
2784 4800 1.996786 GCGTGCCATGAGTCCATTGG 61.997 60.000 0.00 0.00 0.00 3.16
2785 4801 1.028330 AGCGTGCCATGAGTCCATTG 61.028 55.000 0.00 0.00 0.00 2.82
2786 4802 0.322816 AAGCGTGCCATGAGTCCATT 60.323 50.000 0.00 0.00 0.00 3.16
2787 4803 1.028330 CAAGCGTGCCATGAGTCCAT 61.028 55.000 0.00 0.00 0.00 3.41
2788 4804 1.672030 CAAGCGTGCCATGAGTCCA 60.672 57.895 0.00 0.00 0.00 4.02
2789 4805 0.745845 ATCAAGCGTGCCATGAGTCC 60.746 55.000 0.00 0.00 0.00 3.85
2790 4806 0.376152 CATCAAGCGTGCCATGAGTC 59.624 55.000 0.00 0.00 0.00 3.36
2791 4807 0.036105 TCATCAAGCGTGCCATGAGT 60.036 50.000 0.00 0.00 0.00 3.41
2792 4808 1.306148 ATCATCAAGCGTGCCATGAG 58.694 50.000 9.28 0.00 0.00 2.90
2793 4809 1.753930 AATCATCAAGCGTGCCATGA 58.246 45.000 6.50 6.50 0.00 3.07
2794 4810 2.287188 GGTAATCATCAAGCGTGCCATG 60.287 50.000 0.00 0.00 0.00 3.66
2795 4811 1.949525 GGTAATCATCAAGCGTGCCAT 59.050 47.619 0.00 0.00 0.00 4.40
2796 4812 1.378531 GGTAATCATCAAGCGTGCCA 58.621 50.000 0.00 0.00 0.00 4.92
2797 4813 0.663153 GGGTAATCATCAAGCGTGCC 59.337 55.000 0.00 0.00 0.00 5.01
2798 4814 1.331756 CTGGGTAATCATCAAGCGTGC 59.668 52.381 0.00 0.00 0.00 5.34
2830 4846 3.251972 TCTGCACTCGATCTAGCTATGTG 59.748 47.826 0.00 0.00 0.00 3.21
2840 4856 5.427082 CGTAATCAATTTCTGCACTCGATC 58.573 41.667 0.00 0.00 0.00 3.69
2841 4857 4.260375 GCGTAATCAATTTCTGCACTCGAT 60.260 41.667 0.00 0.00 0.00 3.59
2842 4858 3.062099 GCGTAATCAATTTCTGCACTCGA 59.938 43.478 0.00 0.00 0.00 4.04
2843 4859 3.181521 TGCGTAATCAATTTCTGCACTCG 60.182 43.478 0.00 0.00 0.00 4.18
2875 4891 3.950794 TTAGCTTGCTGGTCGGCCG 62.951 63.158 22.12 22.12 37.67 6.13
2907 4923 6.352516 AGATCAATTCTACAACACCAGGATC 58.647 40.000 0.00 0.00 30.96 3.36
2955 4971 4.099380 TGACACGAAACAAAGGGAAAAC 57.901 40.909 0.00 0.00 0.00 2.43
2971 4988 9.382244 GTAATACTTCATTGACAAGTTTGACAC 57.618 33.333 0.00 0.00 35.63 3.67
3012 5060 3.190079 CGACCATGTAGTGAGATTGTGG 58.810 50.000 0.00 0.00 0.00 4.17
3035 5083 3.128764 ACTGAGCAATTGATCATGCAGTG 59.871 43.478 25.38 15.31 44.95 3.66
3074 5122 4.158384 GAGCGTTTTGATGTTACCATGTG 58.842 43.478 0.00 0.00 0.00 3.21
3075 5123 3.818210 TGAGCGTTTTGATGTTACCATGT 59.182 39.130 0.00 0.00 0.00 3.21
3076 5124 4.418013 TGAGCGTTTTGATGTTACCATG 57.582 40.909 0.00 0.00 0.00 3.66
3077 5125 4.142403 CCATGAGCGTTTTGATGTTACCAT 60.142 41.667 0.00 0.00 0.00 3.55
3078 5126 3.190327 CCATGAGCGTTTTGATGTTACCA 59.810 43.478 0.00 0.00 0.00 3.25
3079 5127 3.758300 CCATGAGCGTTTTGATGTTACC 58.242 45.455 0.00 0.00 0.00 2.85
3080 5128 3.171277 GCCATGAGCGTTTTGATGTTAC 58.829 45.455 0.00 0.00 0.00 2.50
3081 5129 3.485947 GCCATGAGCGTTTTGATGTTA 57.514 42.857 0.00 0.00 0.00 2.41
3082 5130 2.352503 GCCATGAGCGTTTTGATGTT 57.647 45.000 0.00 0.00 0.00 2.71
3100 5148 0.178068 TCTAAGAATGAGGCCACCGC 59.822 55.000 5.01 0.00 0.00 5.68
3101 5149 1.808133 GCTCTAAGAATGAGGCCACCG 60.808 57.143 5.01 0.00 0.00 4.94
3102 5150 1.210478 TGCTCTAAGAATGAGGCCACC 59.790 52.381 5.01 0.00 0.00 4.61
3103 5151 2.698855 TGCTCTAAGAATGAGGCCAC 57.301 50.000 5.01 0.00 0.00 5.01
3104 5152 3.044156 AGATGCTCTAAGAATGAGGCCA 58.956 45.455 5.01 0.00 0.00 5.36
3105 5153 3.767902 AGATGCTCTAAGAATGAGGCC 57.232 47.619 0.00 0.00 0.00 5.19
3106 5154 4.701765 TGAAGATGCTCTAAGAATGAGGC 58.298 43.478 0.00 0.00 0.00 4.70
3107 5155 6.111382 TGTTGAAGATGCTCTAAGAATGAGG 58.889 40.000 0.00 0.00 0.00 3.86
3108 5156 6.258287 CCTGTTGAAGATGCTCTAAGAATGAG 59.742 42.308 0.00 0.00 0.00 2.90
3109 5157 6.111382 CCTGTTGAAGATGCTCTAAGAATGA 58.889 40.000 0.00 0.00 0.00 2.57
3110 5158 5.220815 GCCTGTTGAAGATGCTCTAAGAATG 60.221 44.000 0.00 0.00 0.00 2.67
3111 5159 4.880696 GCCTGTTGAAGATGCTCTAAGAAT 59.119 41.667 0.00 0.00 0.00 2.40
3112 5160 4.256920 GCCTGTTGAAGATGCTCTAAGAA 58.743 43.478 0.00 0.00 0.00 2.52
3450 5528 2.102420 ACACCGCCGAGAATGATAATGA 59.898 45.455 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.