Multiple sequence alignment - TraesCS6A01G133800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G133800 chr6A 100.000 2270 0 0 1 2270 106060443 106058174 0.000000e+00 4193
1 TraesCS6A01G133800 chr6A 95.591 998 30 9 1 986 106067662 106066667 0.000000e+00 1587
2 TraesCS6A01G133800 chr6D 94.558 882 44 4 1393 2270 269310942 269310061 0.000000e+00 1360
3 TraesCS6A01G133800 chr6D 93.622 878 50 4 1393 2269 314372125 314371253 0.000000e+00 1306
4 TraesCS6A01G133800 chr6D 90.640 406 38 0 987 1392 87668221 87667816 7.130000e-150 540
5 TraesCS6A01G133800 chr2D 93.395 863 50 5 1389 2248 12354220 12353362 0.000000e+00 1271
6 TraesCS6A01G133800 chr2D 91.714 881 58 10 1393 2270 195591420 195590552 0.000000e+00 1208
7 TraesCS6A01G133800 chr2B 92.744 882 55 8 1393 2270 496605260 496606136 0.000000e+00 1266
8 TraesCS6A01G133800 chr3B 92.203 885 60 7 1390 2270 371875624 371876503 0.000000e+00 1243
9 TraesCS6A01G133800 chr6B 92.159 880 61 5 1391 2270 262519096 262519967 0.000000e+00 1236
10 TraesCS6A01G133800 chr6B 87.961 407 49 0 987 1393 346414422 346414016 4.390000e-132 481
11 TraesCS6A01G133800 chr3A 90.831 927 62 16 75 986 410953786 410954704 0.000000e+00 1219
12 TraesCS6A01G133800 chr3A 89.892 930 73 17 75 986 410969832 410970758 0.000000e+00 1177
13 TraesCS6A01G133800 chr3A 90.886 779 54 16 219 986 559586009 559586781 0.000000e+00 1029
14 TraesCS6A01G133800 chr3A 90.757 779 55 17 219 986 559387000 559386228 0.000000e+00 1024
15 TraesCS6A01G133800 chr7B 91.743 872 59 6 1390 2261 612123503 612124361 0.000000e+00 1199
16 TraesCS6A01G133800 chr7B 85.749 407 56 1 987 1393 27982737 27983141 1.610000e-116 429
17 TraesCS6A01G133800 chr1B 91.600 869 63 6 1395 2261 416929195 416928335 0.000000e+00 1192
18 TraesCS6A01G133800 chr1B 87.224 407 52 0 987 1393 269072184 269071778 4.420000e-127 464
19 TraesCS6A01G133800 chr5A 87.984 1007 81 27 3 986 266067392 266066403 0.000000e+00 1153
20 TraesCS6A01G133800 chr5A 90.757 779 54 12 219 986 483876799 483876028 0.000000e+00 1024
21 TraesCS6A01G133800 chr5A 90.494 789 54 20 214 987 313040667 313041449 0.000000e+00 1022
22 TraesCS6A01G133800 chr5A 84.222 938 89 36 79 986 327410174 327411082 0.000000e+00 857
23 TraesCS6A01G133800 chr5A 84.009 938 90 37 79 986 327417325 327418232 0.000000e+00 846
24 TraesCS6A01G133800 chr2A 92.483 745 40 13 254 986 603492261 603493001 0.000000e+00 1051
25 TraesCS6A01G133800 chr2A 88.148 405 48 0 989 1393 608934725 608934321 1.220000e-132 483
26 TraesCS6A01G133800 chr1A 90.387 801 53 19 199 986 406805202 406804413 0.000000e+00 1031
27 TraesCS6A01G133800 chr1A 91.133 406 35 1 987 1392 94242773 94242369 1.190000e-152 549
28 TraesCS6A01G133800 chr7D 85.517 1015 97 40 3 987 395903645 395902651 0.000000e+00 1014
29 TraesCS6A01G133800 chr7D 89.055 402 38 2 994 1394 580111448 580111052 5.630000e-136 494
30 TraesCS6A01G133800 chr3D 83.929 1008 105 38 3 986 234664443 234663469 0.000000e+00 911
31 TraesCS6A01G133800 chr7A 83.284 1011 112 33 3 986 359308326 359309306 0.000000e+00 878
32 TraesCS6A01G133800 chr4D 82.776 987 94 43 20 986 333588515 333589445 0.000000e+00 811
33 TraesCS6A01G133800 chr5B 88.206 407 48 0 987 1393 239323187 239322781 9.430000e-134 486
34 TraesCS6A01G133800 chr4B 88.206 407 48 0 987 1393 92552144 92552550 9.430000e-134 486


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G133800 chr6A 106058174 106060443 2269 True 4193 4193 100.000 1 2270 1 chr6A.!!$R1 2269
1 TraesCS6A01G133800 chr6A 106066667 106067662 995 True 1587 1587 95.591 1 986 1 chr6A.!!$R2 985
2 TraesCS6A01G133800 chr6D 269310061 269310942 881 True 1360 1360 94.558 1393 2270 1 chr6D.!!$R2 877
3 TraesCS6A01G133800 chr6D 314371253 314372125 872 True 1306 1306 93.622 1393 2269 1 chr6D.!!$R3 876
4 TraesCS6A01G133800 chr2D 12353362 12354220 858 True 1271 1271 93.395 1389 2248 1 chr2D.!!$R1 859
5 TraesCS6A01G133800 chr2D 195590552 195591420 868 True 1208 1208 91.714 1393 2270 1 chr2D.!!$R2 877
6 TraesCS6A01G133800 chr2B 496605260 496606136 876 False 1266 1266 92.744 1393 2270 1 chr2B.!!$F1 877
7 TraesCS6A01G133800 chr3B 371875624 371876503 879 False 1243 1243 92.203 1390 2270 1 chr3B.!!$F1 880
8 TraesCS6A01G133800 chr6B 262519096 262519967 871 False 1236 1236 92.159 1391 2270 1 chr6B.!!$F1 879
9 TraesCS6A01G133800 chr3A 410953786 410954704 918 False 1219 1219 90.831 75 986 1 chr3A.!!$F1 911
10 TraesCS6A01G133800 chr3A 410969832 410970758 926 False 1177 1177 89.892 75 986 1 chr3A.!!$F2 911
11 TraesCS6A01G133800 chr3A 559586009 559586781 772 False 1029 1029 90.886 219 986 1 chr3A.!!$F3 767
12 TraesCS6A01G133800 chr3A 559386228 559387000 772 True 1024 1024 90.757 219 986 1 chr3A.!!$R1 767
13 TraesCS6A01G133800 chr7B 612123503 612124361 858 False 1199 1199 91.743 1390 2261 1 chr7B.!!$F2 871
14 TraesCS6A01G133800 chr1B 416928335 416929195 860 True 1192 1192 91.600 1395 2261 1 chr1B.!!$R2 866
15 TraesCS6A01G133800 chr5A 266066403 266067392 989 True 1153 1153 87.984 3 986 1 chr5A.!!$R1 983
16 TraesCS6A01G133800 chr5A 483876028 483876799 771 True 1024 1024 90.757 219 986 1 chr5A.!!$R2 767
17 TraesCS6A01G133800 chr5A 313040667 313041449 782 False 1022 1022 90.494 214 987 1 chr5A.!!$F1 773
18 TraesCS6A01G133800 chr5A 327410174 327411082 908 False 857 857 84.222 79 986 1 chr5A.!!$F2 907
19 TraesCS6A01G133800 chr5A 327417325 327418232 907 False 846 846 84.009 79 986 1 chr5A.!!$F3 907
20 TraesCS6A01G133800 chr2A 603492261 603493001 740 False 1051 1051 92.483 254 986 1 chr2A.!!$F1 732
21 TraesCS6A01G133800 chr1A 406804413 406805202 789 True 1031 1031 90.387 199 986 1 chr1A.!!$R2 787
22 TraesCS6A01G133800 chr7D 395902651 395903645 994 True 1014 1014 85.517 3 987 1 chr7D.!!$R1 984
23 TraesCS6A01G133800 chr3D 234663469 234664443 974 True 911 911 83.929 3 986 1 chr3D.!!$R1 983
24 TraesCS6A01G133800 chr7A 359308326 359309306 980 False 878 878 83.284 3 986 1 chr7A.!!$F1 983
25 TraesCS6A01G133800 chr4D 333588515 333589445 930 False 811 811 82.776 20 986 1 chr4D.!!$F1 966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 1104 2.571653 TGGGATGTTACACCAAGAGGAG 59.428 50.0 6.38 0.0 38.69 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2119 2240 2.619074 GCATAGGGGTTGCTTGACTCTT 60.619 50.0 0.0 0.0 37.14 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 56 2.665185 GCGGTTGTTGCGAGGAGT 60.665 61.111 0.00 0.00 0.00 3.85
987 1096 9.719355 AAATTTAGAATTTTGGGATGTTACACC 57.281 29.630 0.00 0.00 0.00 4.16
988 1097 7.841282 TTTAGAATTTTGGGATGTTACACCA 57.159 32.000 6.38 0.00 0.00 4.17
989 1098 7.841282 TTAGAATTTTGGGATGTTACACCAA 57.159 32.000 3.69 3.69 42.16 3.67
990 1099 6.345096 AGAATTTTGGGATGTTACACCAAG 57.655 37.500 7.36 0.00 44.32 3.61
991 1100 6.074648 AGAATTTTGGGATGTTACACCAAGA 58.925 36.000 7.36 4.47 44.32 3.02
992 1101 5.982890 ATTTTGGGATGTTACACCAAGAG 57.017 39.130 7.36 0.00 44.32 2.85
993 1102 3.433306 TTGGGATGTTACACCAAGAGG 57.567 47.619 3.69 0.00 39.22 3.69
994 1103 2.626785 TGGGATGTTACACCAAGAGGA 58.373 47.619 6.38 0.00 38.69 3.71
995 1104 2.571653 TGGGATGTTACACCAAGAGGAG 59.428 50.000 6.38 0.00 38.69 3.69
996 1105 2.838202 GGGATGTTACACCAAGAGGAGA 59.162 50.000 6.38 0.00 38.69 3.71
997 1106 3.263425 GGGATGTTACACCAAGAGGAGAA 59.737 47.826 6.38 0.00 38.69 2.87
998 1107 4.263331 GGGATGTTACACCAAGAGGAGAAA 60.263 45.833 6.38 0.00 38.69 2.52
999 1108 5.501156 GGATGTTACACCAAGAGGAGAAAT 58.499 41.667 0.00 0.00 38.69 2.17
1000 1109 6.352737 GGGATGTTACACCAAGAGGAGAAATA 60.353 42.308 6.38 0.00 38.69 1.40
1001 1110 7.283329 GGATGTTACACCAAGAGGAGAAATAT 58.717 38.462 0.00 0.00 38.69 1.28
1002 1111 7.227512 GGATGTTACACCAAGAGGAGAAATATG 59.772 40.741 0.00 0.00 38.69 1.78
1003 1112 5.880332 TGTTACACCAAGAGGAGAAATATGC 59.120 40.000 0.00 0.00 38.69 3.14
1004 1113 3.891049 ACACCAAGAGGAGAAATATGCC 58.109 45.455 0.00 0.00 38.69 4.40
1005 1114 2.874701 CACCAAGAGGAGAAATATGCCG 59.125 50.000 0.00 0.00 38.69 5.69
1006 1115 2.771943 ACCAAGAGGAGAAATATGCCGA 59.228 45.455 0.00 0.00 38.69 5.54
1007 1116 3.392616 ACCAAGAGGAGAAATATGCCGAT 59.607 43.478 0.00 0.00 38.69 4.18
1008 1117 4.141390 ACCAAGAGGAGAAATATGCCGATT 60.141 41.667 0.00 0.00 38.69 3.34
1009 1118 4.214971 CCAAGAGGAGAAATATGCCGATTG 59.785 45.833 0.00 0.00 36.89 2.67
1010 1119 3.406764 AGAGGAGAAATATGCCGATTGC 58.593 45.455 0.00 0.00 41.77 3.56
1011 1120 2.146342 AGGAGAAATATGCCGATTGCG 58.854 47.619 0.00 0.00 45.60 4.85
1012 1121 2.143122 GGAGAAATATGCCGATTGCGA 58.857 47.619 0.00 0.00 45.60 5.10
1013 1122 2.548057 GGAGAAATATGCCGATTGCGAA 59.452 45.455 0.00 0.00 45.60 4.70
1014 1123 3.364366 GGAGAAATATGCCGATTGCGAAG 60.364 47.826 0.00 0.00 45.60 3.79
1015 1124 3.466836 AGAAATATGCCGATTGCGAAGA 58.533 40.909 0.00 0.00 45.60 2.87
1016 1125 4.067896 AGAAATATGCCGATTGCGAAGAT 58.932 39.130 0.00 0.00 45.60 2.40
1017 1126 3.818961 AATATGCCGATTGCGAAGATG 57.181 42.857 0.00 0.00 45.60 2.90
1018 1127 1.511850 TATGCCGATTGCGAAGATGG 58.488 50.000 0.00 0.00 45.60 3.51
1019 1128 1.789078 ATGCCGATTGCGAAGATGGC 61.789 55.000 1.97 1.97 45.60 4.40
1020 1129 2.628106 CCGATTGCGAAGATGGCG 59.372 61.111 0.00 0.00 40.82 5.69
1021 1130 2.628106 CGATTGCGAAGATGGCGG 59.372 61.111 0.00 0.00 40.82 6.13
1022 1131 1.882625 CGATTGCGAAGATGGCGGA 60.883 57.895 0.00 0.00 40.82 5.54
1023 1132 1.825285 CGATTGCGAAGATGGCGGAG 61.825 60.000 0.00 0.00 40.82 4.63
1024 1133 0.530650 GATTGCGAAGATGGCGGAGA 60.531 55.000 0.00 0.00 0.00 3.71
1025 1134 0.531532 ATTGCGAAGATGGCGGAGAG 60.532 55.000 0.00 0.00 0.00 3.20
1026 1135 1.604147 TTGCGAAGATGGCGGAGAGA 61.604 55.000 0.00 0.00 0.00 3.10
1027 1136 1.590259 GCGAAGATGGCGGAGAGAC 60.590 63.158 0.00 0.00 0.00 3.36
1028 1137 2.010582 GCGAAGATGGCGGAGAGACT 62.011 60.000 0.00 0.00 0.00 3.24
1029 1138 0.248825 CGAAGATGGCGGAGAGACTG 60.249 60.000 0.00 0.00 0.00 3.51
1035 1144 4.334837 GCGGAGAGACTGCTATGC 57.665 61.111 0.00 0.00 46.39 3.14
1036 1145 1.300542 GCGGAGAGACTGCTATGCC 60.301 63.158 0.00 0.00 46.39 4.40
1037 1146 2.021068 GCGGAGAGACTGCTATGCCA 62.021 60.000 0.00 0.00 46.39 4.92
1038 1147 0.461548 CGGAGAGACTGCTATGCCAA 59.538 55.000 0.00 0.00 0.00 4.52
1039 1148 1.804372 CGGAGAGACTGCTATGCCAAC 60.804 57.143 0.00 0.00 0.00 3.77
1040 1149 1.565305 GAGAGACTGCTATGCCAACG 58.435 55.000 0.00 0.00 0.00 4.10
1041 1150 0.460987 AGAGACTGCTATGCCAACGC 60.461 55.000 0.00 0.00 0.00 4.84
1057 1166 2.491152 GCATGGGCGTTGTGGATG 59.509 61.111 0.00 0.00 0.00 3.51
1058 1167 2.045708 GCATGGGCGTTGTGGATGA 61.046 57.895 0.00 0.00 0.00 2.92
1059 1168 1.594194 GCATGGGCGTTGTGGATGAA 61.594 55.000 0.00 0.00 0.00 2.57
1060 1169 0.452987 CATGGGCGTTGTGGATGAAG 59.547 55.000 0.00 0.00 0.00 3.02
1061 1170 0.680921 ATGGGCGTTGTGGATGAAGG 60.681 55.000 0.00 0.00 0.00 3.46
1062 1171 2.700773 GGGCGTTGTGGATGAAGGC 61.701 63.158 0.00 0.00 34.25 4.35
1063 1172 2.700773 GGCGTTGTGGATGAAGGCC 61.701 63.158 0.00 0.00 44.55 5.19
1064 1173 1.971167 GCGTTGTGGATGAAGGCCA 60.971 57.895 5.01 0.00 0.00 5.36
1065 1174 1.926511 GCGTTGTGGATGAAGGCCAG 61.927 60.000 5.01 0.00 35.77 4.85
1066 1175 1.885871 GTTGTGGATGAAGGCCAGC 59.114 57.895 5.01 0.00 35.77 4.85
1067 1176 0.895100 GTTGTGGATGAAGGCCAGCA 60.895 55.000 5.01 1.90 35.77 4.41
1068 1177 0.178967 TTGTGGATGAAGGCCAGCAA 60.179 50.000 5.01 0.00 35.77 3.91
1069 1178 0.609957 TGTGGATGAAGGCCAGCAAG 60.610 55.000 5.01 0.00 35.77 4.01
1070 1179 0.610232 GTGGATGAAGGCCAGCAAGT 60.610 55.000 5.01 0.00 35.77 3.16
1071 1180 0.322816 TGGATGAAGGCCAGCAAGTC 60.323 55.000 5.01 0.00 31.55 3.01
1072 1181 0.322816 GGATGAAGGCCAGCAAGTCA 60.323 55.000 5.01 0.00 31.55 3.41
1073 1182 0.807496 GATGAAGGCCAGCAAGTCAC 59.193 55.000 5.01 0.00 0.00 3.67
1074 1183 0.111061 ATGAAGGCCAGCAAGTCACA 59.889 50.000 5.01 0.00 0.00 3.58
1075 1184 0.535780 TGAAGGCCAGCAAGTCACAG 60.536 55.000 5.01 0.00 0.00 3.66
1076 1185 0.250467 GAAGGCCAGCAAGTCACAGA 60.250 55.000 5.01 0.00 0.00 3.41
1077 1186 0.250640 AAGGCCAGCAAGTCACAGAG 60.251 55.000 5.01 0.00 0.00 3.35
1078 1187 1.673665 GGCCAGCAAGTCACAGAGG 60.674 63.158 0.00 0.00 0.00 3.69
1079 1188 1.372683 GCCAGCAAGTCACAGAGGA 59.627 57.895 0.00 0.00 0.00 3.71
1080 1189 0.250467 GCCAGCAAGTCACAGAGGAA 60.250 55.000 0.00 0.00 0.00 3.36
1081 1190 1.805869 CCAGCAAGTCACAGAGGAAG 58.194 55.000 0.00 0.00 0.00 3.46
1082 1191 1.155042 CAGCAAGTCACAGAGGAAGC 58.845 55.000 0.00 0.00 0.00 3.86
1083 1192 0.036022 AGCAAGTCACAGAGGAAGCC 59.964 55.000 0.00 0.00 0.00 4.35
1084 1193 0.250467 GCAAGTCACAGAGGAAGCCA 60.250 55.000 0.00 0.00 0.00 4.75
1085 1194 1.612726 GCAAGTCACAGAGGAAGCCAT 60.613 52.381 0.00 0.00 0.00 4.40
1086 1195 2.787994 CAAGTCACAGAGGAAGCCATT 58.212 47.619 0.00 0.00 0.00 3.16
1087 1196 2.486472 AGTCACAGAGGAAGCCATTG 57.514 50.000 0.00 0.00 0.00 2.82
1088 1197 1.980765 AGTCACAGAGGAAGCCATTGA 59.019 47.619 0.00 0.00 0.00 2.57
1089 1198 2.079925 GTCACAGAGGAAGCCATTGAC 58.920 52.381 0.00 0.00 0.00 3.18
1090 1199 1.699083 TCACAGAGGAAGCCATTGACA 59.301 47.619 0.00 0.00 0.00 3.58
1091 1200 2.106338 TCACAGAGGAAGCCATTGACAA 59.894 45.455 0.00 0.00 0.00 3.18
1092 1201 2.886523 CACAGAGGAAGCCATTGACAAA 59.113 45.455 0.00 0.00 0.00 2.83
1093 1202 3.508793 CACAGAGGAAGCCATTGACAAAT 59.491 43.478 0.00 0.00 0.00 2.32
1094 1203 4.021719 CACAGAGGAAGCCATTGACAAATT 60.022 41.667 0.00 0.00 0.00 1.82
1095 1204 4.590222 ACAGAGGAAGCCATTGACAAATTT 59.410 37.500 0.00 0.00 0.00 1.82
1096 1205 4.927425 CAGAGGAAGCCATTGACAAATTTG 59.073 41.667 16.67 16.67 0.00 2.32
1097 1206 4.590222 AGAGGAAGCCATTGACAAATTTGT 59.410 37.500 23.49 23.49 45.65 2.83
1098 1207 4.634199 AGGAAGCCATTGACAAATTTGTG 58.366 39.130 27.85 14.02 42.43 3.33
1099 1208 3.747529 GGAAGCCATTGACAAATTTGTGG 59.252 43.478 27.85 21.76 42.43 4.17
1100 1209 2.769893 AGCCATTGACAAATTTGTGGC 58.230 42.857 29.63 29.63 43.16 5.01
1101 1210 2.369532 AGCCATTGACAAATTTGTGGCT 59.630 40.909 32.05 32.05 46.07 4.75
1102 1211 3.924144 GCCATTGACAAATTTGTGGCTA 58.076 40.909 29.55 16.04 42.43 3.93
1103 1212 4.506758 GCCATTGACAAATTTGTGGCTAT 58.493 39.130 29.55 17.20 42.43 2.97
1104 1213 4.330620 GCCATTGACAAATTTGTGGCTATG 59.669 41.667 29.55 24.00 42.43 2.23
1105 1214 5.481105 CCATTGACAAATTTGTGGCTATGT 58.519 37.500 27.85 1.27 42.43 2.29
1106 1215 5.933463 CCATTGACAAATTTGTGGCTATGTT 59.067 36.000 27.85 0.00 42.43 2.71
1107 1216 6.091169 CCATTGACAAATTTGTGGCTATGTTC 59.909 38.462 27.85 10.71 42.43 3.18
1108 1217 5.132897 TGACAAATTTGTGGCTATGTTCC 57.867 39.130 27.85 10.02 42.43 3.62
1109 1218 4.586421 TGACAAATTTGTGGCTATGTTCCA 59.414 37.500 27.85 12.41 42.43 3.53
1110 1219 5.069648 TGACAAATTTGTGGCTATGTTCCAA 59.930 36.000 27.85 0.00 42.43 3.53
1111 1220 5.540911 ACAAATTTGTGGCTATGTTCCAAG 58.459 37.500 22.71 0.00 40.49 3.61
1112 1221 4.806640 AATTTGTGGCTATGTTCCAAGG 57.193 40.909 0.00 0.00 35.01 3.61
1113 1222 2.214376 TTGTGGCTATGTTCCAAGGG 57.786 50.000 0.00 0.00 35.01 3.95
1114 1223 0.323360 TGTGGCTATGTTCCAAGGGC 60.323 55.000 0.00 0.00 35.01 5.19
1115 1224 0.323360 GTGGCTATGTTCCAAGGGCA 60.323 55.000 0.00 0.00 35.01 5.36
1116 1225 0.034186 TGGCTATGTTCCAAGGGCAG 60.034 55.000 0.00 0.00 0.00 4.85
1117 1226 1.387295 GGCTATGTTCCAAGGGCAGC 61.387 60.000 0.00 0.00 0.00 5.25
1118 1227 0.394899 GCTATGTTCCAAGGGCAGCT 60.395 55.000 0.00 0.00 0.00 4.24
1119 1228 1.673168 CTATGTTCCAAGGGCAGCTC 58.327 55.000 0.00 0.00 0.00 4.09
1120 1229 0.255890 TATGTTCCAAGGGCAGCTCC 59.744 55.000 0.00 0.00 0.00 4.70
1129 1238 4.445699 GGCAGCTCCCTAACATCG 57.554 61.111 0.00 0.00 0.00 3.84
1130 1239 1.889573 GGCAGCTCCCTAACATCGC 60.890 63.158 0.00 0.00 0.00 4.58
1131 1240 2.240500 GCAGCTCCCTAACATCGCG 61.241 63.158 0.00 0.00 0.00 5.87
1132 1241 1.592669 CAGCTCCCTAACATCGCGG 60.593 63.158 6.13 0.00 0.00 6.46
1133 1242 2.058595 AGCTCCCTAACATCGCGGT 61.059 57.895 6.13 0.00 0.00 5.68
1134 1243 1.883084 GCTCCCTAACATCGCGGTG 60.883 63.158 19.79 19.79 0.00 4.94
1135 1244 1.227263 CTCCCTAACATCGCGGTGG 60.227 63.158 25.34 5.15 0.00 4.61
1136 1245 1.956629 CTCCCTAACATCGCGGTGGT 61.957 60.000 25.34 21.52 0.00 4.16
1137 1246 1.813753 CCCTAACATCGCGGTGGTG 60.814 63.158 22.66 10.09 0.00 4.17
1138 1247 1.813753 CCTAACATCGCGGTGGTGG 60.814 63.158 22.66 18.51 0.00 4.61
1139 1248 2.435234 TAACATCGCGGTGGTGGC 60.435 61.111 22.66 0.00 0.00 5.01
1140 1249 2.852495 CTAACATCGCGGTGGTGGCT 62.852 60.000 22.66 0.00 0.00 4.75
1141 1250 2.845752 TAACATCGCGGTGGTGGCTC 62.846 60.000 22.66 0.00 0.00 4.70
1142 1251 4.457496 CATCGCGGTGGTGGCTCT 62.457 66.667 12.68 0.00 0.00 4.09
1143 1252 4.148825 ATCGCGGTGGTGGCTCTC 62.149 66.667 6.13 0.00 0.00 3.20
1154 1263 4.021925 GGCTCTCCGGGCACTGTT 62.022 66.667 0.00 0.00 0.00 3.16
1155 1264 2.435059 GCTCTCCGGGCACTGTTC 60.435 66.667 0.00 0.00 0.00 3.18
1156 1265 3.059982 CTCTCCGGGCACTGTTCA 58.940 61.111 0.00 0.00 0.00 3.18
1157 1266 1.371183 CTCTCCGGGCACTGTTCAA 59.629 57.895 0.00 0.00 0.00 2.69
1158 1267 0.951040 CTCTCCGGGCACTGTTCAAC 60.951 60.000 0.00 0.00 0.00 3.18
1159 1268 1.966451 CTCCGGGCACTGTTCAACC 60.966 63.158 0.00 0.00 0.00 3.77
1160 1269 2.113139 CCGGGCACTGTTCAACCT 59.887 61.111 0.00 0.00 0.00 3.50
1161 1270 1.966451 CCGGGCACTGTTCAACCTC 60.966 63.158 0.00 0.00 0.00 3.85
1162 1271 2.317609 CGGGCACTGTTCAACCTCG 61.318 63.158 0.00 0.00 0.00 4.63
1163 1272 1.070786 GGGCACTGTTCAACCTCGA 59.929 57.895 0.00 0.00 0.00 4.04
1164 1273 1.228657 GGGCACTGTTCAACCTCGAC 61.229 60.000 0.00 0.00 0.00 4.20
1165 1274 0.249911 GGCACTGTTCAACCTCGACT 60.250 55.000 0.00 0.00 0.00 4.18
1166 1275 0.861837 GCACTGTTCAACCTCGACTG 59.138 55.000 0.00 0.00 0.00 3.51
1167 1276 0.861837 CACTGTTCAACCTCGACTGC 59.138 55.000 0.00 0.00 0.00 4.40
1168 1277 0.597637 ACTGTTCAACCTCGACTGCG 60.598 55.000 0.00 0.00 39.35 5.18
1169 1278 0.318699 CTGTTCAACCTCGACTGCGA 60.319 55.000 0.00 0.00 45.71 5.10
1170 1279 0.596600 TGTTCAACCTCGACTGCGAC 60.597 55.000 0.00 0.00 42.51 5.19
1171 1280 0.318784 GTTCAACCTCGACTGCGACT 60.319 55.000 0.00 0.00 42.51 4.18
1172 1281 0.387929 TTCAACCTCGACTGCGACTT 59.612 50.000 0.00 0.00 42.51 3.01
1173 1282 0.318699 TCAACCTCGACTGCGACTTG 60.319 55.000 0.00 0.00 42.51 3.16
1174 1283 1.006102 AACCTCGACTGCGACTTGG 60.006 57.895 0.00 0.00 42.51 3.61
1175 1284 2.811317 CCTCGACTGCGACTTGGC 60.811 66.667 0.00 0.00 42.51 4.52
1176 1285 3.175240 CTCGACTGCGACTTGGCG 61.175 66.667 0.00 0.00 42.51 5.69
1191 1300 3.204827 GCGCATGCCGTTGAGGAT 61.205 61.111 13.15 0.00 45.00 3.24
1192 1301 2.711311 CGCATGCCGTTGAGGATG 59.289 61.111 13.15 0.00 45.00 3.51
1193 1302 2.410469 GCATGCCGTTGAGGATGC 59.590 61.111 6.36 2.26 45.00 3.91
1194 1303 3.113745 CATGCCGTTGAGGATGCC 58.886 61.111 0.00 0.00 45.00 4.40
1195 1304 2.124151 ATGCCGTTGAGGATGCCC 60.124 61.111 0.00 0.00 45.00 5.36
1196 1305 2.982643 ATGCCGTTGAGGATGCCCA 61.983 57.895 0.00 0.00 45.00 5.36
1197 1306 2.825836 GCCGTTGAGGATGCCCAG 60.826 66.667 0.00 0.00 45.00 4.45
1198 1307 2.124570 CCGTTGAGGATGCCCAGG 60.125 66.667 0.00 0.00 45.00 4.45
1199 1308 2.671070 CGTTGAGGATGCCCAGGT 59.329 61.111 0.00 0.00 33.88 4.00
1200 1309 1.746615 CGTTGAGGATGCCCAGGTG 60.747 63.158 0.00 0.00 33.88 4.00
1201 1310 1.379044 GTTGAGGATGCCCAGGTGG 60.379 63.158 0.00 0.00 33.88 4.61
1225 1334 4.394712 GTGGTGAGGCGGGACCAG 62.395 72.222 5.67 0.00 43.01 4.00
1226 1335 4.631740 TGGTGAGGCGGGACCAGA 62.632 66.667 0.00 0.00 43.14 3.86
1227 1336 3.775654 GGTGAGGCGGGACCAGAG 61.776 72.222 0.00 0.00 43.14 3.35
1228 1337 2.680352 GTGAGGCGGGACCAGAGA 60.680 66.667 0.00 0.00 43.14 3.10
1229 1338 2.060980 GTGAGGCGGGACCAGAGAT 61.061 63.158 0.00 0.00 43.14 2.75
1230 1339 2.060383 TGAGGCGGGACCAGAGATG 61.060 63.158 0.00 0.00 43.14 2.90
1231 1340 3.453070 GAGGCGGGACCAGAGATGC 62.453 68.421 0.00 0.00 43.14 3.91
1232 1341 3.785859 GGCGGGACCAGAGATGCA 61.786 66.667 0.00 0.00 38.86 3.96
1233 1342 2.202987 GCGGGACCAGAGATGCAG 60.203 66.667 0.00 0.00 0.00 4.41
1234 1343 2.503061 CGGGACCAGAGATGCAGG 59.497 66.667 0.00 0.00 0.00 4.85
1235 1344 2.191641 GGGACCAGAGATGCAGGC 59.808 66.667 0.00 0.00 0.00 4.85
1236 1345 2.673200 GGGACCAGAGATGCAGGCA 61.673 63.158 0.00 0.00 0.00 4.75
1237 1346 1.153208 GGACCAGAGATGCAGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
1238 1347 1.818785 GACCAGAGATGCAGGCAGC 60.819 63.158 0.42 0.42 45.96 5.25
1275 1384 4.803426 GCGGCGGAGTGACTGGAG 62.803 72.222 9.78 0.00 0.00 3.86
1276 1385 3.374402 CGGCGGAGTGACTGGAGT 61.374 66.667 0.00 0.00 0.00 3.85
1277 1386 2.262915 GGCGGAGTGACTGGAGTG 59.737 66.667 0.00 0.00 0.00 3.51
1278 1387 2.574955 GGCGGAGTGACTGGAGTGT 61.575 63.158 0.00 0.00 0.00 3.55
1279 1388 1.367840 GCGGAGTGACTGGAGTGTT 59.632 57.895 0.00 0.00 0.00 3.32
1280 1389 0.249911 GCGGAGTGACTGGAGTGTTT 60.250 55.000 0.00 0.00 0.00 2.83
1281 1390 1.502231 CGGAGTGACTGGAGTGTTTG 58.498 55.000 0.00 0.00 0.00 2.93
1282 1391 1.202533 CGGAGTGACTGGAGTGTTTGT 60.203 52.381 0.00 0.00 0.00 2.83
1283 1392 2.035449 CGGAGTGACTGGAGTGTTTGTA 59.965 50.000 0.00 0.00 0.00 2.41
1284 1393 3.654414 GGAGTGACTGGAGTGTTTGTAG 58.346 50.000 0.00 0.00 0.00 2.74
1285 1394 3.060602 GAGTGACTGGAGTGTTTGTAGC 58.939 50.000 0.00 0.00 0.00 3.58
1286 1395 2.700897 AGTGACTGGAGTGTTTGTAGCT 59.299 45.455 0.00 0.00 0.00 3.32
1287 1396 3.060602 GTGACTGGAGTGTTTGTAGCTC 58.939 50.000 0.00 0.00 0.00 4.09
1288 1397 2.037251 TGACTGGAGTGTTTGTAGCTCC 59.963 50.000 0.00 0.00 46.61 4.70
1289 1398 2.300437 GACTGGAGTGTTTGTAGCTCCT 59.700 50.000 10.61 0.00 46.57 3.69
1290 1399 2.037772 ACTGGAGTGTTTGTAGCTCCTG 59.962 50.000 12.87 12.87 46.57 3.86
1291 1400 2.037772 CTGGAGTGTTTGTAGCTCCTGT 59.962 50.000 10.61 0.00 46.57 4.00
1292 1401 3.236047 TGGAGTGTTTGTAGCTCCTGTA 58.764 45.455 10.61 0.00 46.57 2.74
1293 1402 3.258372 TGGAGTGTTTGTAGCTCCTGTAG 59.742 47.826 10.61 0.00 46.57 2.74
1294 1403 3.510360 GGAGTGTTTGTAGCTCCTGTAGA 59.490 47.826 0.00 0.00 43.93 2.59
1295 1404 4.021368 GGAGTGTTTGTAGCTCCTGTAGAA 60.021 45.833 0.00 0.00 43.93 2.10
1296 1405 5.140747 AGTGTTTGTAGCTCCTGTAGAAG 57.859 43.478 0.00 0.00 0.00 2.85
1297 1406 4.833380 AGTGTTTGTAGCTCCTGTAGAAGA 59.167 41.667 0.00 0.00 0.00 2.87
1298 1407 5.482175 AGTGTTTGTAGCTCCTGTAGAAGAT 59.518 40.000 0.00 0.00 0.00 2.40
1299 1408 5.578727 GTGTTTGTAGCTCCTGTAGAAGATG 59.421 44.000 0.00 0.00 0.00 2.90
1300 1409 5.246203 TGTTTGTAGCTCCTGTAGAAGATGT 59.754 40.000 0.00 0.00 0.00 3.06
1301 1410 4.991153 TGTAGCTCCTGTAGAAGATGTG 57.009 45.455 0.00 0.00 0.00 3.21
1302 1411 2.977772 AGCTCCTGTAGAAGATGTGC 57.022 50.000 0.00 0.00 0.00 4.57
1303 1412 2.465813 AGCTCCTGTAGAAGATGTGCT 58.534 47.619 0.00 0.00 0.00 4.40
1304 1413 2.430332 AGCTCCTGTAGAAGATGTGCTC 59.570 50.000 0.00 0.00 0.00 4.26
1305 1414 2.430332 GCTCCTGTAGAAGATGTGCTCT 59.570 50.000 0.00 0.00 34.96 4.09
1306 1415 3.634448 GCTCCTGTAGAAGATGTGCTCTA 59.366 47.826 0.00 0.00 32.41 2.43
1307 1416 4.261572 GCTCCTGTAGAAGATGTGCTCTAG 60.262 50.000 0.00 0.00 32.41 2.43
1308 1417 4.861196 TCCTGTAGAAGATGTGCTCTAGT 58.139 43.478 0.00 0.00 32.41 2.57
1309 1418 5.265191 TCCTGTAGAAGATGTGCTCTAGTT 58.735 41.667 0.00 0.00 32.41 2.24
1310 1419 5.717178 TCCTGTAGAAGATGTGCTCTAGTTT 59.283 40.000 0.00 0.00 32.41 2.66
1311 1420 6.890268 TCCTGTAGAAGATGTGCTCTAGTTTA 59.110 38.462 0.00 0.00 32.41 2.01
1312 1421 6.975772 CCTGTAGAAGATGTGCTCTAGTTTAC 59.024 42.308 0.00 0.00 32.41 2.01
1313 1422 7.363007 CCTGTAGAAGATGTGCTCTAGTTTACA 60.363 40.741 0.00 0.00 32.41 2.41
1314 1423 8.067751 TGTAGAAGATGTGCTCTAGTTTACAT 57.932 34.615 7.77 7.77 36.54 2.29
1315 1424 7.976175 TGTAGAAGATGTGCTCTAGTTTACATG 59.024 37.037 11.32 0.00 34.18 3.21
1316 1425 7.175347 AGAAGATGTGCTCTAGTTTACATGA 57.825 36.000 0.00 0.00 34.18 3.07
1317 1426 7.790027 AGAAGATGTGCTCTAGTTTACATGAT 58.210 34.615 0.00 3.20 34.18 2.45
1318 1427 8.918116 AGAAGATGTGCTCTAGTTTACATGATA 58.082 33.333 0.00 0.00 34.18 2.15
1319 1428 9.190858 GAAGATGTGCTCTAGTTTACATGATAG 57.809 37.037 0.00 0.00 34.18 2.08
1320 1429 7.151308 AGATGTGCTCTAGTTTACATGATAGC 58.849 38.462 0.00 0.00 34.18 2.97
1321 1430 6.471233 TGTGCTCTAGTTTACATGATAGCT 57.529 37.500 0.00 0.00 0.00 3.32
1322 1431 6.878317 TGTGCTCTAGTTTACATGATAGCTT 58.122 36.000 0.00 0.00 0.00 3.74
1323 1432 6.980978 TGTGCTCTAGTTTACATGATAGCTTC 59.019 38.462 0.00 0.00 0.00 3.86
1324 1433 6.980978 GTGCTCTAGTTTACATGATAGCTTCA 59.019 38.462 0.00 0.00 39.12 3.02
1325 1434 7.492669 GTGCTCTAGTTTACATGATAGCTTCAA 59.507 37.037 0.00 0.00 38.03 2.69
1326 1435 7.492669 TGCTCTAGTTTACATGATAGCTTCAAC 59.507 37.037 0.00 0.00 38.03 3.18
1327 1436 7.042389 GCTCTAGTTTACATGATAGCTTCAACC 60.042 40.741 0.00 0.00 38.03 3.77
1328 1437 7.272978 TCTAGTTTACATGATAGCTTCAACCC 58.727 38.462 0.00 0.00 38.03 4.11
1329 1438 5.815581 AGTTTACATGATAGCTTCAACCCA 58.184 37.500 0.00 0.00 38.03 4.51
1330 1439 6.426587 AGTTTACATGATAGCTTCAACCCAT 58.573 36.000 0.00 0.00 38.03 4.00
1331 1440 6.543831 AGTTTACATGATAGCTTCAACCCATC 59.456 38.462 0.00 0.00 38.03 3.51
1332 1441 4.785346 ACATGATAGCTTCAACCCATCT 57.215 40.909 0.00 0.00 38.03 2.90
1333 1442 4.458397 ACATGATAGCTTCAACCCATCTG 58.542 43.478 0.00 0.00 38.03 2.90
1334 1443 2.923121 TGATAGCTTCAACCCATCTGC 58.077 47.619 0.00 0.00 0.00 4.26
1335 1444 2.507058 TGATAGCTTCAACCCATCTGCT 59.493 45.455 0.00 0.00 34.92 4.24
1336 1445 3.054139 TGATAGCTTCAACCCATCTGCTT 60.054 43.478 0.00 0.00 32.72 3.91
1337 1446 4.164030 TGATAGCTTCAACCCATCTGCTTA 59.836 41.667 0.00 0.00 32.72 3.09
1338 1447 3.659183 AGCTTCAACCCATCTGCTTAT 57.341 42.857 0.00 0.00 0.00 1.73
1339 1448 3.285484 AGCTTCAACCCATCTGCTTATG 58.715 45.455 0.00 0.00 0.00 1.90
1340 1449 3.019564 GCTTCAACCCATCTGCTTATGT 58.980 45.455 0.00 0.00 0.00 2.29
1341 1450 3.181493 GCTTCAACCCATCTGCTTATGTG 60.181 47.826 0.00 0.00 0.00 3.21
1342 1451 3.719268 TCAACCCATCTGCTTATGTGT 57.281 42.857 0.00 0.00 0.00 3.72
1343 1452 3.346315 TCAACCCATCTGCTTATGTGTG 58.654 45.455 0.00 0.00 0.00 3.82
1344 1453 3.084039 CAACCCATCTGCTTATGTGTGT 58.916 45.455 0.00 0.00 0.00 3.72
1345 1454 2.715046 ACCCATCTGCTTATGTGTGTG 58.285 47.619 0.00 0.00 0.00 3.82
1346 1455 1.402968 CCCATCTGCTTATGTGTGTGC 59.597 52.381 0.00 0.00 0.00 4.57
1347 1456 1.063027 CCATCTGCTTATGTGTGTGCG 59.937 52.381 0.00 0.00 0.00 5.34
1348 1457 0.729116 ATCTGCTTATGTGTGTGCGC 59.271 50.000 0.00 0.00 0.00 6.09
1349 1458 1.225827 CTGCTTATGTGTGTGCGCG 60.226 57.895 0.00 0.00 0.00 6.86
1350 1459 2.574212 GCTTATGTGTGTGCGCGC 60.574 61.111 27.26 27.26 0.00 6.86
1351 1460 2.098298 CTTATGTGTGTGCGCGCC 59.902 61.111 30.77 20.33 0.00 6.53
1352 1461 2.358125 TTATGTGTGTGCGCGCCT 60.358 55.556 30.77 6.09 0.00 5.52
1353 1462 2.567470 CTTATGTGTGTGCGCGCCTG 62.567 60.000 30.77 2.20 0.00 4.85
1354 1463 3.874807 TATGTGTGTGCGCGCCTGT 62.875 57.895 30.77 9.92 0.00 4.00
1356 1465 4.250431 GTGTGTGCGCGCCTGTTT 62.250 61.111 30.77 0.00 0.00 2.83
1357 1466 4.249020 TGTGTGCGCGCCTGTTTG 62.249 61.111 30.77 0.00 0.00 2.93
1358 1467 4.250431 GTGTGCGCGCCTGTTTGT 62.250 61.111 30.77 0.00 0.00 2.83
1359 1468 2.589159 TGTGCGCGCCTGTTTGTA 60.589 55.556 30.77 3.44 0.00 2.41
1360 1469 2.180862 TGTGCGCGCCTGTTTGTAA 61.181 52.632 30.77 2.53 0.00 2.41
1361 1470 1.209127 GTGCGCGCCTGTTTGTAAT 59.791 52.632 30.77 0.00 0.00 1.89
1362 1471 0.793104 GTGCGCGCCTGTTTGTAATC 60.793 55.000 30.77 0.00 0.00 1.75
1363 1472 1.580132 GCGCGCCTGTTTGTAATCG 60.580 57.895 23.24 0.00 0.00 3.34
1364 1473 1.785321 CGCGCCTGTTTGTAATCGT 59.215 52.632 0.00 0.00 0.00 3.73
1365 1474 0.247145 CGCGCCTGTTTGTAATCGTC 60.247 55.000 0.00 0.00 0.00 4.20
1366 1475 0.247145 GCGCCTGTTTGTAATCGTCG 60.247 55.000 0.00 0.00 0.00 5.12
1367 1476 1.342555 CGCCTGTTTGTAATCGTCGA 58.657 50.000 0.00 0.00 0.00 4.20
1368 1477 1.058695 CGCCTGTTTGTAATCGTCGAC 59.941 52.381 5.18 5.18 0.00 4.20
1369 1478 1.058695 GCCTGTTTGTAATCGTCGACG 59.941 52.381 31.30 31.30 41.45 5.12
1370 1479 2.322161 CCTGTTTGTAATCGTCGACGT 58.678 47.619 34.40 20.79 40.80 4.34
1371 1480 2.340577 CCTGTTTGTAATCGTCGACGTC 59.659 50.000 34.40 22.73 40.80 4.34
1372 1481 1.971284 TGTTTGTAATCGTCGACGTCG 59.029 47.619 34.40 31.30 40.80 5.12
1373 1482 1.315571 GTTTGTAATCGTCGACGTCGG 59.684 52.381 35.05 21.47 40.80 4.79
1374 1483 0.516877 TTGTAATCGTCGACGTCGGT 59.483 50.000 35.05 20.65 40.80 4.69
1375 1484 0.179217 TGTAATCGTCGACGTCGGTG 60.179 55.000 35.05 26.69 40.80 4.94
1376 1485 0.095245 GTAATCGTCGACGTCGGTGA 59.905 55.000 35.05 30.36 40.80 4.02
1377 1486 0.795698 TAATCGTCGACGTCGGTGAA 59.204 50.000 35.05 19.53 40.80 3.18
1378 1487 0.169672 AATCGTCGACGTCGGTGAAT 59.830 50.000 35.05 22.90 40.80 2.57
1379 1488 0.522705 ATCGTCGACGTCGGTGAATG 60.523 55.000 35.05 21.69 40.80 2.67
1380 1489 2.774951 CGTCGACGTCGGTGAATGC 61.775 63.158 35.05 16.11 40.29 3.56
1381 1490 1.443872 GTCGACGTCGGTGAATGCT 60.444 57.895 35.05 0.00 40.29 3.79
1382 1491 0.179181 GTCGACGTCGGTGAATGCTA 60.179 55.000 35.05 12.03 40.29 3.49
1383 1492 0.736636 TCGACGTCGGTGAATGCTAT 59.263 50.000 35.05 0.00 40.29 2.97
1384 1493 1.121240 CGACGTCGGTGAATGCTATC 58.879 55.000 29.70 0.00 35.37 2.08
1385 1494 1.268589 CGACGTCGGTGAATGCTATCT 60.269 52.381 29.70 0.00 35.37 1.98
1386 1495 2.120232 GACGTCGGTGAATGCTATCTG 58.880 52.381 0.00 0.00 0.00 2.90
1387 1496 0.855349 CGTCGGTGAATGCTATCTGC 59.145 55.000 0.00 0.00 43.25 4.26
1424 1533 7.304497 ACTACACAACCTTCTTCTTGTAGAT 57.696 36.000 12.31 0.00 39.06 1.98
1460 1569 0.865769 GTGCACAGGTTTGTAGGACG 59.134 55.000 13.17 0.00 35.25 4.79
1540 1649 5.486775 AGGATGAAGATGGTCTCTCTCAAAA 59.513 40.000 0.00 0.00 31.03 2.44
1595 1704 1.713647 TCCCCAACACACCCAATACAT 59.286 47.619 0.00 0.00 0.00 2.29
1648 1757 3.170791 AGAGATGGTGATACAAGTGCG 57.829 47.619 0.00 0.00 0.00 5.34
1666 1775 8.972127 ACAAGTGCGATATGGATAGTAGATAAT 58.028 33.333 0.00 0.00 0.00 1.28
1668 1777 8.753497 AGTGCGATATGGATAGTAGATAATGA 57.247 34.615 0.00 0.00 0.00 2.57
1731 1841 1.921243 AAAAAGTGAGCACAAACGGC 58.079 45.000 3.19 0.00 0.00 5.68
1861 1971 5.461032 AAGAGTCACTCCAAAGTCACTAG 57.539 43.478 0.00 0.00 36.91 2.57
1877 1987 3.570975 TCACTAGTAGCGGAGAACAAACA 59.429 43.478 0.00 0.00 0.00 2.83
1923 2033 6.650427 AACCACCTCAAAGTTATTCTTTCC 57.350 37.500 0.00 0.00 43.57 3.13
2047 2158 8.776061 TCCGTGGGTATGATTATATGATATGA 57.224 34.615 0.00 0.00 0.00 2.15
2119 2240 0.766131 TGCCCCAAAGTTTCTACCGA 59.234 50.000 0.00 0.00 0.00 4.69
2164 2292 0.031721 GTTCACGAGGTCACGGAACT 59.968 55.000 0.00 0.00 38.75 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
987 1096 4.320057 GCAATCGGCATATTTCTCCTCTTG 60.320 45.833 0.00 0.00 43.97 3.02
988 1097 3.817647 GCAATCGGCATATTTCTCCTCTT 59.182 43.478 0.00 0.00 43.97 2.85
989 1098 3.406764 GCAATCGGCATATTTCTCCTCT 58.593 45.455 0.00 0.00 43.97 3.69
990 1099 2.158449 CGCAATCGGCATATTTCTCCTC 59.842 50.000 0.00 0.00 45.17 3.71
991 1100 2.146342 CGCAATCGGCATATTTCTCCT 58.854 47.619 0.00 0.00 45.17 3.69
992 1101 2.143122 TCGCAATCGGCATATTTCTCC 58.857 47.619 0.00 0.00 45.17 3.71
993 1102 3.494626 TCTTCGCAATCGGCATATTTCTC 59.505 43.478 0.00 0.00 45.17 2.87
994 1103 3.466836 TCTTCGCAATCGGCATATTTCT 58.533 40.909 0.00 0.00 45.17 2.52
995 1104 3.878086 TCTTCGCAATCGGCATATTTC 57.122 42.857 0.00 0.00 45.17 2.17
996 1105 3.058016 CCATCTTCGCAATCGGCATATTT 60.058 43.478 0.00 0.00 45.17 1.40
997 1106 2.485426 CCATCTTCGCAATCGGCATATT 59.515 45.455 0.00 0.00 45.17 1.28
998 1107 2.079158 CCATCTTCGCAATCGGCATAT 58.921 47.619 0.00 0.00 45.17 1.78
999 1108 1.511850 CCATCTTCGCAATCGGCATA 58.488 50.000 0.00 0.00 45.17 3.14
1000 1109 1.789078 GCCATCTTCGCAATCGGCAT 61.789 55.000 0.00 0.00 45.17 4.40
1001 1110 2.472059 GCCATCTTCGCAATCGGCA 61.472 57.895 0.00 0.00 45.17 5.69
1002 1111 2.329339 GCCATCTTCGCAATCGGC 59.671 61.111 0.00 0.00 39.90 5.54
1003 1112 2.628106 CGCCATCTTCGCAATCGG 59.372 61.111 0.00 0.00 36.13 4.18
1004 1113 1.825285 CTCCGCCATCTTCGCAATCG 61.825 60.000 0.00 0.00 0.00 3.34
1005 1114 0.530650 TCTCCGCCATCTTCGCAATC 60.531 55.000 0.00 0.00 0.00 2.67
1006 1115 0.531532 CTCTCCGCCATCTTCGCAAT 60.532 55.000 0.00 0.00 0.00 3.56
1007 1116 1.153568 CTCTCCGCCATCTTCGCAA 60.154 57.895 0.00 0.00 0.00 4.85
1008 1117 2.052104 TCTCTCCGCCATCTTCGCA 61.052 57.895 0.00 0.00 0.00 5.10
1009 1118 1.590259 GTCTCTCCGCCATCTTCGC 60.590 63.158 0.00 0.00 0.00 4.70
1010 1119 0.248825 CAGTCTCTCCGCCATCTTCG 60.249 60.000 0.00 0.00 0.00 3.79
1011 1120 0.529555 GCAGTCTCTCCGCCATCTTC 60.530 60.000 0.00 0.00 0.00 2.87
1012 1121 0.975040 AGCAGTCTCTCCGCCATCTT 60.975 55.000 0.00 0.00 0.00 2.40
1013 1122 0.106469 TAGCAGTCTCTCCGCCATCT 60.106 55.000 0.00 0.00 0.00 2.90
1014 1123 0.965439 ATAGCAGTCTCTCCGCCATC 59.035 55.000 0.00 0.00 0.00 3.51
1015 1124 0.678395 CATAGCAGTCTCTCCGCCAT 59.322 55.000 0.00 0.00 0.00 4.40
1016 1125 2.021068 GCATAGCAGTCTCTCCGCCA 62.021 60.000 0.00 0.00 0.00 5.69
1017 1126 1.300542 GCATAGCAGTCTCTCCGCC 60.301 63.158 0.00 0.00 0.00 6.13
1018 1127 1.300542 GGCATAGCAGTCTCTCCGC 60.301 63.158 0.00 0.00 0.00 5.54
1019 1128 0.461548 TTGGCATAGCAGTCTCTCCG 59.538 55.000 0.00 0.00 0.00 4.63
1020 1129 1.804372 CGTTGGCATAGCAGTCTCTCC 60.804 57.143 0.00 0.00 0.00 3.71
1021 1130 1.565305 CGTTGGCATAGCAGTCTCTC 58.435 55.000 0.00 0.00 0.00 3.20
1022 1131 0.460987 GCGTTGGCATAGCAGTCTCT 60.461 55.000 9.40 0.00 39.62 3.10
1023 1132 0.740868 TGCGTTGGCATAGCAGTCTC 60.741 55.000 12.40 0.00 46.21 3.36
1024 1133 1.296392 TGCGTTGGCATAGCAGTCT 59.704 52.632 12.40 0.00 46.21 3.24
1025 1134 3.889227 TGCGTTGGCATAGCAGTC 58.111 55.556 12.40 0.00 46.21 3.51
1040 1149 1.594194 TTCATCCACAACGCCCATGC 61.594 55.000 0.00 0.00 0.00 4.06
1041 1150 0.452987 CTTCATCCACAACGCCCATG 59.547 55.000 0.00 0.00 0.00 3.66
1042 1151 0.680921 CCTTCATCCACAACGCCCAT 60.681 55.000 0.00 0.00 0.00 4.00
1043 1152 1.303236 CCTTCATCCACAACGCCCA 60.303 57.895 0.00 0.00 0.00 5.36
1044 1153 2.700773 GCCTTCATCCACAACGCCC 61.701 63.158 0.00 0.00 0.00 6.13
1045 1154 2.700773 GGCCTTCATCCACAACGCC 61.701 63.158 0.00 0.00 0.00 5.68
1046 1155 1.926511 CTGGCCTTCATCCACAACGC 61.927 60.000 3.32 0.00 0.00 4.84
1047 1156 1.926511 GCTGGCCTTCATCCACAACG 61.927 60.000 3.32 0.00 0.00 4.10
1048 1157 0.895100 TGCTGGCCTTCATCCACAAC 60.895 55.000 3.32 0.00 0.00 3.32
1049 1158 0.178967 TTGCTGGCCTTCATCCACAA 60.179 50.000 3.32 0.00 0.00 3.33
1050 1159 0.609957 CTTGCTGGCCTTCATCCACA 60.610 55.000 3.32 0.00 0.00 4.17
1051 1160 0.610232 ACTTGCTGGCCTTCATCCAC 60.610 55.000 3.32 0.00 0.00 4.02
1052 1161 0.322816 GACTTGCTGGCCTTCATCCA 60.323 55.000 3.32 0.00 0.00 3.41
1053 1162 0.322816 TGACTTGCTGGCCTTCATCC 60.323 55.000 3.32 0.00 0.00 3.51
1054 1163 0.807496 GTGACTTGCTGGCCTTCATC 59.193 55.000 3.32 0.00 0.00 2.92
1055 1164 0.111061 TGTGACTTGCTGGCCTTCAT 59.889 50.000 3.32 0.00 0.00 2.57
1056 1165 0.535780 CTGTGACTTGCTGGCCTTCA 60.536 55.000 3.32 0.00 0.00 3.02
1057 1166 0.250467 TCTGTGACTTGCTGGCCTTC 60.250 55.000 3.32 0.00 0.00 3.46
1058 1167 0.250640 CTCTGTGACTTGCTGGCCTT 60.251 55.000 3.32 0.00 0.00 4.35
1059 1168 1.374190 CTCTGTGACTTGCTGGCCT 59.626 57.895 3.32 0.00 0.00 5.19
1060 1169 1.673665 CCTCTGTGACTTGCTGGCC 60.674 63.158 0.00 0.00 0.00 5.36
1061 1170 0.250467 TTCCTCTGTGACTTGCTGGC 60.250 55.000 0.00 0.00 0.00 4.85
1062 1171 1.805869 CTTCCTCTGTGACTTGCTGG 58.194 55.000 0.00 0.00 0.00 4.85
1063 1172 1.155042 GCTTCCTCTGTGACTTGCTG 58.845 55.000 0.00 0.00 0.00 4.41
1064 1173 0.036022 GGCTTCCTCTGTGACTTGCT 59.964 55.000 0.00 0.00 0.00 3.91
1065 1174 0.250467 TGGCTTCCTCTGTGACTTGC 60.250 55.000 0.00 0.00 0.00 4.01
1066 1175 2.486472 ATGGCTTCCTCTGTGACTTG 57.514 50.000 0.00 0.00 0.00 3.16
1067 1176 2.373169 TCAATGGCTTCCTCTGTGACTT 59.627 45.455 0.00 0.00 0.00 3.01
1068 1177 1.980765 TCAATGGCTTCCTCTGTGACT 59.019 47.619 0.00 0.00 0.00 3.41
1069 1178 2.079925 GTCAATGGCTTCCTCTGTGAC 58.920 52.381 0.00 0.00 0.00 3.67
1070 1179 1.699083 TGTCAATGGCTTCCTCTGTGA 59.301 47.619 0.00 0.00 0.00 3.58
1071 1180 2.189594 TGTCAATGGCTTCCTCTGTG 57.810 50.000 0.00 0.00 0.00 3.66
1072 1181 2.957402 TTGTCAATGGCTTCCTCTGT 57.043 45.000 0.00 0.00 0.00 3.41
1073 1182 4.796038 AATTTGTCAATGGCTTCCTCTG 57.204 40.909 0.00 0.00 0.00 3.35
1074 1183 4.590222 ACAAATTTGTCAATGGCTTCCTCT 59.410 37.500 18.13 0.00 36.50 3.69
1075 1184 4.687483 CACAAATTTGTCAATGGCTTCCTC 59.313 41.667 20.85 0.00 39.91 3.71
1076 1185 4.503643 CCACAAATTTGTCAATGGCTTCCT 60.504 41.667 20.85 0.00 39.91 3.36
1077 1186 3.747529 CCACAAATTTGTCAATGGCTTCC 59.252 43.478 20.85 0.00 39.91 3.46
1078 1187 3.187022 GCCACAAATTTGTCAATGGCTTC 59.813 43.478 29.55 12.02 41.01 3.86
1079 1188 3.140623 GCCACAAATTTGTCAATGGCTT 58.859 40.909 29.55 5.14 41.01 4.35
1080 1189 2.369532 AGCCACAAATTTGTCAATGGCT 59.630 40.909 32.05 32.05 46.07 4.75
1081 1190 2.769893 AGCCACAAATTTGTCAATGGC 58.230 42.857 29.63 29.63 43.16 4.40
1082 1191 5.481105 ACATAGCCACAAATTTGTCAATGG 58.519 37.500 20.85 18.73 39.91 3.16
1083 1192 6.091169 GGAACATAGCCACAAATTTGTCAATG 59.909 38.462 20.85 20.23 39.91 2.82
1084 1193 6.165577 GGAACATAGCCACAAATTTGTCAAT 58.834 36.000 20.85 11.53 39.91 2.57
1085 1194 5.069648 TGGAACATAGCCACAAATTTGTCAA 59.930 36.000 20.85 7.28 39.91 3.18
1086 1195 4.586421 TGGAACATAGCCACAAATTTGTCA 59.414 37.500 20.85 9.08 39.91 3.58
1087 1196 5.132897 TGGAACATAGCCACAAATTTGTC 57.867 39.130 20.85 11.03 39.91 3.18
1088 1197 5.511202 CCTTGGAACATAGCCACAAATTTGT 60.511 40.000 18.13 18.13 39.69 2.83
1089 1198 4.931002 CCTTGGAACATAGCCACAAATTTG 59.069 41.667 16.67 16.67 39.30 2.32
1090 1199 4.020307 CCCTTGGAACATAGCCACAAATTT 60.020 41.667 0.00 0.00 39.30 1.82
1091 1200 3.515104 CCCTTGGAACATAGCCACAAATT 59.485 43.478 0.00 0.00 39.30 1.82
1092 1201 3.099141 CCCTTGGAACATAGCCACAAAT 58.901 45.455 0.00 0.00 39.30 2.32
1093 1202 2.524306 CCCTTGGAACATAGCCACAAA 58.476 47.619 0.00 0.00 39.30 2.83
1094 1203 1.890573 GCCCTTGGAACATAGCCACAA 60.891 52.381 0.00 0.00 39.30 3.33
1095 1204 0.323360 GCCCTTGGAACATAGCCACA 60.323 55.000 0.00 0.00 39.30 4.17
1096 1205 0.323360 TGCCCTTGGAACATAGCCAC 60.323 55.000 0.00 0.00 39.30 5.01
1097 1206 0.034186 CTGCCCTTGGAACATAGCCA 60.034 55.000 0.00 0.00 39.30 4.75
1098 1207 1.387295 GCTGCCCTTGGAACATAGCC 61.387 60.000 0.00 0.00 39.30 3.93
1099 1208 0.394899 AGCTGCCCTTGGAACATAGC 60.395 55.000 0.00 0.00 39.30 2.97
1100 1209 1.673168 GAGCTGCCCTTGGAACATAG 58.327 55.000 0.00 0.00 39.30 2.23
1101 1210 0.255890 GGAGCTGCCCTTGGAACATA 59.744 55.000 0.00 0.00 39.30 2.29
1102 1211 1.000396 GGAGCTGCCCTTGGAACAT 60.000 57.895 0.00 0.00 39.30 2.71
1103 1212 2.436109 GGAGCTGCCCTTGGAACA 59.564 61.111 0.00 0.00 0.00 3.18
1112 1221 1.889573 GCGATGTTAGGGAGCTGCC 60.890 63.158 18.04 18.04 0.00 4.85
1113 1222 2.240500 CGCGATGTTAGGGAGCTGC 61.241 63.158 0.00 0.00 0.00 5.25
1114 1223 1.592669 CCGCGATGTTAGGGAGCTG 60.593 63.158 8.23 0.00 0.00 4.24
1115 1224 2.058595 ACCGCGATGTTAGGGAGCT 61.059 57.895 8.23 0.00 0.00 4.09
1116 1225 1.883084 CACCGCGATGTTAGGGAGC 60.883 63.158 8.23 0.00 0.00 4.70
1117 1226 1.227263 CCACCGCGATGTTAGGGAG 60.227 63.158 8.23 0.00 0.00 4.30
1118 1227 1.985662 ACCACCGCGATGTTAGGGA 60.986 57.895 8.23 0.00 0.00 4.20
1119 1228 1.813753 CACCACCGCGATGTTAGGG 60.814 63.158 8.23 0.00 0.00 3.53
1120 1229 1.813753 CCACCACCGCGATGTTAGG 60.814 63.158 8.23 0.00 0.00 2.69
1121 1230 2.461110 GCCACCACCGCGATGTTAG 61.461 63.158 8.23 0.00 0.00 2.34
1122 1231 2.435234 GCCACCACCGCGATGTTA 60.435 61.111 8.23 0.00 0.00 2.41
1123 1232 4.329545 AGCCACCACCGCGATGTT 62.330 61.111 8.23 0.00 0.00 2.71
1124 1233 4.760047 GAGCCACCACCGCGATGT 62.760 66.667 8.23 0.00 0.00 3.06
1125 1234 4.457496 AGAGCCACCACCGCGATG 62.457 66.667 8.23 0.00 0.00 3.84
1126 1235 4.148825 GAGAGCCACCACCGCGAT 62.149 66.667 8.23 0.00 0.00 4.58
1135 1244 4.767255 CAGTGCCCGGAGAGCCAC 62.767 72.222 0.73 1.85 0.00 5.01
1137 1246 3.959991 GAACAGTGCCCGGAGAGCC 62.960 68.421 0.73 0.00 0.00 4.70
1138 1247 2.435059 GAACAGTGCCCGGAGAGC 60.435 66.667 0.73 0.00 0.00 4.09
1139 1248 0.951040 GTTGAACAGTGCCCGGAGAG 60.951 60.000 0.73 0.00 0.00 3.20
1140 1249 1.070786 GTTGAACAGTGCCCGGAGA 59.929 57.895 0.73 0.00 0.00 3.71
1141 1250 1.966451 GGTTGAACAGTGCCCGGAG 60.966 63.158 0.73 0.00 0.00 4.63
1142 1251 2.112297 GGTTGAACAGTGCCCGGA 59.888 61.111 0.73 0.00 0.00 5.14
1143 1252 1.966451 GAGGTTGAACAGTGCCCGG 60.966 63.158 0.00 0.00 0.00 5.73
1144 1253 2.317609 CGAGGTTGAACAGTGCCCG 61.318 63.158 0.00 0.00 0.00 6.13
1145 1254 1.070786 TCGAGGTTGAACAGTGCCC 59.929 57.895 0.00 0.00 0.00 5.36
1146 1255 0.249911 AGTCGAGGTTGAACAGTGCC 60.250 55.000 0.00 0.00 0.00 5.01
1147 1256 0.861837 CAGTCGAGGTTGAACAGTGC 59.138 55.000 0.00 0.00 0.00 4.40
1148 1257 0.861837 GCAGTCGAGGTTGAACAGTG 59.138 55.000 0.00 0.00 0.00 3.66
1149 1258 0.597637 CGCAGTCGAGGTTGAACAGT 60.598 55.000 0.00 0.00 38.10 3.55
1150 1259 0.318699 TCGCAGTCGAGGTTGAACAG 60.319 55.000 0.00 0.00 40.21 3.16
1151 1260 0.596600 GTCGCAGTCGAGGTTGAACA 60.597 55.000 0.00 0.00 46.46 3.18
1152 1261 0.318784 AGTCGCAGTCGAGGTTGAAC 60.319 55.000 0.00 0.00 46.46 3.18
1153 1262 0.387929 AAGTCGCAGTCGAGGTTGAA 59.612 50.000 0.00 0.00 46.46 2.69
1154 1263 0.318699 CAAGTCGCAGTCGAGGTTGA 60.319 55.000 0.00 0.00 46.46 3.18
1155 1264 1.284982 CCAAGTCGCAGTCGAGGTTG 61.285 60.000 0.00 0.00 46.46 3.77
1156 1265 1.006102 CCAAGTCGCAGTCGAGGTT 60.006 57.895 0.00 0.00 46.46 3.50
1157 1266 2.651361 CCAAGTCGCAGTCGAGGT 59.349 61.111 0.00 0.00 46.46 3.85
1158 1267 2.811317 GCCAAGTCGCAGTCGAGG 60.811 66.667 0.00 0.00 46.46 4.63
1159 1268 3.175240 CGCCAAGTCGCAGTCGAG 61.175 66.667 0.00 0.00 46.46 4.04
1174 1283 3.204827 ATCCTCAACGGCATGCGC 61.205 61.111 12.44 0.00 37.44 6.09
1175 1284 2.711311 CATCCTCAACGGCATGCG 59.289 61.111 12.44 9.76 0.00 4.73
1176 1285 2.410469 GCATCCTCAACGGCATGC 59.590 61.111 9.90 9.90 38.34 4.06
1177 1286 2.484062 GGGCATCCTCAACGGCATG 61.484 63.158 0.00 0.00 0.00 4.06
1178 1287 2.124151 GGGCATCCTCAACGGCAT 60.124 61.111 0.00 0.00 0.00 4.40
1179 1288 3.626996 CTGGGCATCCTCAACGGCA 62.627 63.158 0.00 0.00 0.00 5.69
1180 1289 2.825836 CTGGGCATCCTCAACGGC 60.826 66.667 0.00 0.00 0.00 5.68
1181 1290 2.124570 CCTGGGCATCCTCAACGG 60.125 66.667 0.00 0.00 0.00 4.44
1182 1291 1.746615 CACCTGGGCATCCTCAACG 60.747 63.158 0.00 0.00 0.00 4.10
1183 1292 1.379044 CCACCTGGGCATCCTCAAC 60.379 63.158 0.00 0.00 0.00 3.18
1184 1293 3.089838 CCACCTGGGCATCCTCAA 58.910 61.111 0.00 0.00 0.00 3.02
1195 1304 4.562425 ACCACCGTGTGCCACCTG 62.562 66.667 0.00 0.00 31.34 4.00
1196 1305 4.562425 CACCACCGTGTGCCACCT 62.562 66.667 0.00 0.00 35.10 4.00
1197 1306 4.555709 TCACCACCGTGTGCCACC 62.556 66.667 0.00 0.00 41.09 4.61
1198 1307 2.972505 CTCACCACCGTGTGCCAC 60.973 66.667 0.00 0.00 41.09 5.01
1199 1308 4.248842 CCTCACCACCGTGTGCCA 62.249 66.667 0.00 0.00 41.09 4.92
1208 1317 4.394712 CTGGTCCCGCCTCACCAC 62.395 72.222 0.00 0.00 37.78 4.16
1209 1318 4.631740 TCTGGTCCCGCCTCACCA 62.632 66.667 0.00 0.00 40.56 4.17
1210 1319 3.775654 CTCTGGTCCCGCCTCACC 61.776 72.222 0.00 0.00 38.35 4.02
1211 1320 2.060980 ATCTCTGGTCCCGCCTCAC 61.061 63.158 0.00 0.00 38.35 3.51
1212 1321 2.060383 CATCTCTGGTCCCGCCTCA 61.060 63.158 0.00 0.00 38.35 3.86
1213 1322 2.818132 CATCTCTGGTCCCGCCTC 59.182 66.667 0.00 0.00 38.35 4.70
1214 1323 3.474570 GCATCTCTGGTCCCGCCT 61.475 66.667 0.00 0.00 38.35 5.52
1215 1324 3.746949 CTGCATCTCTGGTCCCGCC 62.747 68.421 0.00 0.00 37.90 6.13
1216 1325 2.202987 CTGCATCTCTGGTCCCGC 60.203 66.667 0.00 0.00 0.00 6.13
1217 1326 2.503061 CCTGCATCTCTGGTCCCG 59.497 66.667 0.00 0.00 0.00 5.14
1218 1327 2.191641 GCCTGCATCTCTGGTCCC 59.808 66.667 0.00 0.00 36.29 4.46
1219 1328 1.153208 CTGCCTGCATCTCTGGTCC 60.153 63.158 0.00 0.00 36.29 4.46
1220 1329 1.818785 GCTGCCTGCATCTCTGGTC 60.819 63.158 0.00 0.00 42.31 4.02
1221 1330 2.271497 GCTGCCTGCATCTCTGGT 59.729 61.111 0.00 0.00 42.31 4.00
1258 1367 4.803426 CTCCAGTCACTCCGCCGC 62.803 72.222 0.00 0.00 0.00 6.53
1259 1368 3.374402 ACTCCAGTCACTCCGCCG 61.374 66.667 0.00 0.00 0.00 6.46
1260 1369 2.100879 AACACTCCAGTCACTCCGCC 62.101 60.000 0.00 0.00 0.00 6.13
1261 1370 0.249911 AAACACTCCAGTCACTCCGC 60.250 55.000 0.00 0.00 0.00 5.54
1262 1371 1.202533 ACAAACACTCCAGTCACTCCG 60.203 52.381 0.00 0.00 0.00 4.63
1263 1372 2.622064 ACAAACACTCCAGTCACTCC 57.378 50.000 0.00 0.00 0.00 3.85
1264 1373 3.060602 GCTACAAACACTCCAGTCACTC 58.939 50.000 0.00 0.00 0.00 3.51
1265 1374 2.700897 AGCTACAAACACTCCAGTCACT 59.299 45.455 0.00 0.00 0.00 3.41
1266 1375 3.060602 GAGCTACAAACACTCCAGTCAC 58.939 50.000 0.00 0.00 0.00 3.67
1267 1376 3.386768 GAGCTACAAACACTCCAGTCA 57.613 47.619 0.00 0.00 0.00 3.41
1273 1382 4.785511 TCTACAGGAGCTACAAACACTC 57.214 45.455 0.00 0.00 0.00 3.51
1274 1383 4.833380 TCTTCTACAGGAGCTACAAACACT 59.167 41.667 0.00 0.00 0.00 3.55
1275 1384 5.135508 TCTTCTACAGGAGCTACAAACAC 57.864 43.478 0.00 0.00 0.00 3.32
1276 1385 5.246203 ACATCTTCTACAGGAGCTACAAACA 59.754 40.000 0.00 0.00 0.00 2.83
1277 1386 5.578727 CACATCTTCTACAGGAGCTACAAAC 59.421 44.000 0.00 0.00 0.00 2.93
1278 1387 5.724328 CACATCTTCTACAGGAGCTACAAA 58.276 41.667 0.00 0.00 0.00 2.83
1279 1388 4.382040 GCACATCTTCTACAGGAGCTACAA 60.382 45.833 0.00 0.00 0.00 2.41
1280 1389 3.131223 GCACATCTTCTACAGGAGCTACA 59.869 47.826 0.00 0.00 0.00 2.74
1281 1390 3.383185 AGCACATCTTCTACAGGAGCTAC 59.617 47.826 0.00 0.00 0.00 3.58
1282 1391 3.634448 GAGCACATCTTCTACAGGAGCTA 59.366 47.826 0.00 0.00 0.00 3.32
1283 1392 2.430332 GAGCACATCTTCTACAGGAGCT 59.570 50.000 0.00 0.00 0.00 4.09
1284 1393 2.430332 AGAGCACATCTTCTACAGGAGC 59.570 50.000 0.00 0.00 32.99 4.70
1285 1394 4.887071 ACTAGAGCACATCTTCTACAGGAG 59.113 45.833 0.00 0.00 39.64 3.69
1286 1395 4.861196 ACTAGAGCACATCTTCTACAGGA 58.139 43.478 0.00 0.00 39.64 3.86
1287 1396 5.590530 AACTAGAGCACATCTTCTACAGG 57.409 43.478 0.00 0.00 39.64 4.00
1288 1397 7.539436 TGTAAACTAGAGCACATCTTCTACAG 58.461 38.462 0.00 0.00 39.64 2.74
1289 1398 7.462571 TGTAAACTAGAGCACATCTTCTACA 57.537 36.000 0.00 0.00 39.64 2.74
1290 1399 8.191446 TCATGTAAACTAGAGCACATCTTCTAC 58.809 37.037 0.00 0.00 39.64 2.59
1291 1400 8.293699 TCATGTAAACTAGAGCACATCTTCTA 57.706 34.615 0.00 0.00 39.64 2.10
1292 1401 7.175347 TCATGTAAACTAGAGCACATCTTCT 57.825 36.000 0.00 0.00 39.64 2.85
1293 1402 9.190858 CTATCATGTAAACTAGAGCACATCTTC 57.809 37.037 0.00 0.00 39.64 2.87
1294 1403 7.655328 GCTATCATGTAAACTAGAGCACATCTT 59.345 37.037 0.00 0.00 39.64 2.40
1295 1404 7.015098 AGCTATCATGTAAACTAGAGCACATCT 59.985 37.037 0.00 0.00 42.47 2.90
1296 1405 7.151308 AGCTATCATGTAAACTAGAGCACATC 58.849 38.462 0.00 0.00 29.31 3.06
1297 1406 7.060383 AGCTATCATGTAAACTAGAGCACAT 57.940 36.000 0.00 0.00 31.91 3.21
1298 1407 6.471233 AGCTATCATGTAAACTAGAGCACA 57.529 37.500 0.00 0.00 0.00 4.57
1299 1408 6.980978 TGAAGCTATCATGTAAACTAGAGCAC 59.019 38.462 0.00 0.00 31.50 4.40
1300 1409 7.112452 TGAAGCTATCATGTAAACTAGAGCA 57.888 36.000 0.00 0.00 31.50 4.26
1301 1410 7.042389 GGTTGAAGCTATCATGTAAACTAGAGC 60.042 40.741 0.00 0.00 38.03 4.09
1302 1411 7.439655 GGGTTGAAGCTATCATGTAAACTAGAG 59.560 40.741 0.00 0.00 38.03 2.43
1303 1412 7.093068 TGGGTTGAAGCTATCATGTAAACTAGA 60.093 37.037 0.00 0.00 38.03 2.43
1304 1413 7.047891 TGGGTTGAAGCTATCATGTAAACTAG 58.952 38.462 0.00 0.00 38.03 2.57
1305 1414 6.953101 TGGGTTGAAGCTATCATGTAAACTA 58.047 36.000 0.00 0.00 38.03 2.24
1306 1415 5.815581 TGGGTTGAAGCTATCATGTAAACT 58.184 37.500 0.00 0.00 38.03 2.66
1307 1416 6.543831 AGATGGGTTGAAGCTATCATGTAAAC 59.456 38.462 20.14 0.00 36.26 2.01
1308 1417 6.543465 CAGATGGGTTGAAGCTATCATGTAAA 59.457 38.462 20.14 0.00 36.26 2.01
1309 1418 6.057533 CAGATGGGTTGAAGCTATCATGTAA 58.942 40.000 20.14 0.00 36.26 2.41
1310 1419 5.614308 CAGATGGGTTGAAGCTATCATGTA 58.386 41.667 20.14 0.00 36.26 2.29
1311 1420 4.458397 CAGATGGGTTGAAGCTATCATGT 58.542 43.478 20.14 0.12 36.26 3.21
1312 1421 3.252701 GCAGATGGGTTGAAGCTATCATG 59.747 47.826 20.14 15.67 36.26 3.07
1313 1422 3.137913 AGCAGATGGGTTGAAGCTATCAT 59.862 43.478 20.14 4.19 36.26 2.45
1314 1423 2.507058 AGCAGATGGGTTGAAGCTATCA 59.493 45.455 20.14 0.00 36.26 2.15
1315 1424 3.205784 AGCAGATGGGTTGAAGCTATC 57.794 47.619 12.04 12.04 34.37 2.08
1316 1425 3.659183 AAGCAGATGGGTTGAAGCTAT 57.341 42.857 0.00 0.00 35.50 2.97
1317 1426 4.080356 ACATAAGCAGATGGGTTGAAGCTA 60.080 41.667 0.00 0.00 37.84 3.32
1318 1427 3.285484 CATAAGCAGATGGGTTGAAGCT 58.715 45.455 0.00 0.00 37.84 3.74
1319 1428 3.019564 ACATAAGCAGATGGGTTGAAGC 58.980 45.455 3.26 0.00 37.84 3.86
1320 1429 4.012374 ACACATAAGCAGATGGGTTGAAG 58.988 43.478 0.12 0.00 40.68 3.02
1321 1430 3.758023 CACACATAAGCAGATGGGTTGAA 59.242 43.478 3.15 0.00 40.68 2.69
1322 1431 3.244875 ACACACATAAGCAGATGGGTTGA 60.245 43.478 3.15 0.00 40.68 3.18
1323 1432 3.084039 ACACACATAAGCAGATGGGTTG 58.916 45.455 3.15 3.09 40.68 3.77
1324 1433 3.084039 CACACACATAAGCAGATGGGTT 58.916 45.455 3.15 0.00 40.68 4.11
1325 1434 2.715046 CACACACATAAGCAGATGGGT 58.285 47.619 0.12 0.12 44.47 4.51
1326 1435 1.402968 GCACACACATAAGCAGATGGG 59.597 52.381 0.00 0.00 36.23 4.00
1327 1436 1.063027 CGCACACACATAAGCAGATGG 59.937 52.381 3.26 0.00 0.00 3.51
1328 1437 1.530441 GCGCACACACATAAGCAGATG 60.530 52.381 0.30 0.00 0.00 2.90
1329 1438 0.729116 GCGCACACACATAAGCAGAT 59.271 50.000 0.30 0.00 0.00 2.90
1330 1439 1.625759 CGCGCACACACATAAGCAGA 61.626 55.000 8.75 0.00 0.00 4.26
1331 1440 1.225827 CGCGCACACACATAAGCAG 60.226 57.895 8.75 0.00 0.00 4.24
1332 1441 2.859580 CGCGCACACACATAAGCA 59.140 55.556 8.75 0.00 0.00 3.91
1333 1442 2.574212 GCGCGCACACACATAAGC 60.574 61.111 29.10 0.00 0.00 3.09
1334 1443 2.098298 GGCGCGCACACACATAAG 59.902 61.111 34.42 0.00 0.00 1.73
1335 1444 2.358125 AGGCGCGCACACACATAA 60.358 55.556 34.42 0.00 0.00 1.90
1336 1445 3.117812 CAGGCGCGCACACACATA 61.118 61.111 34.42 0.00 0.00 2.29
1339 1448 4.250431 AAACAGGCGCGCACACAC 62.250 61.111 34.42 15.34 0.00 3.82
1340 1449 4.249020 CAAACAGGCGCGCACACA 62.249 61.111 34.42 0.00 0.00 3.72
1341 1450 2.381665 TTACAAACAGGCGCGCACAC 62.382 55.000 34.42 16.19 0.00 3.82
1342 1451 1.511318 ATTACAAACAGGCGCGCACA 61.511 50.000 34.42 4.71 0.00 4.57
1343 1452 0.793104 GATTACAAACAGGCGCGCAC 60.793 55.000 34.42 21.95 0.00 5.34
1344 1453 1.499949 GATTACAAACAGGCGCGCA 59.500 52.632 34.42 9.24 0.00 6.09
1345 1454 1.580132 CGATTACAAACAGGCGCGC 60.580 57.895 25.94 25.94 0.00 6.86
1346 1455 0.247145 GACGATTACAAACAGGCGCG 60.247 55.000 0.00 0.00 0.00 6.86
1347 1456 0.247145 CGACGATTACAAACAGGCGC 60.247 55.000 0.00 0.00 0.00 6.53
1348 1457 1.058695 GTCGACGATTACAAACAGGCG 59.941 52.381 0.00 0.00 0.00 5.52
1349 1458 1.058695 CGTCGACGATTACAAACAGGC 59.941 52.381 33.35 0.00 43.02 4.85
1350 1459 2.322161 ACGTCGACGATTACAAACAGG 58.678 47.619 41.52 10.71 43.02 4.00
1351 1460 2.024875 CGACGTCGACGATTACAAACAG 59.975 50.000 41.52 16.08 43.02 3.16
1352 1461 1.971284 CGACGTCGACGATTACAAACA 59.029 47.619 41.52 0.00 43.02 2.83
1353 1462 1.315571 CCGACGTCGACGATTACAAAC 59.684 52.381 41.52 19.52 43.02 2.93
1354 1463 1.069296 ACCGACGTCGACGATTACAAA 60.069 47.619 41.52 0.00 43.02 2.83
1355 1464 0.516877 ACCGACGTCGACGATTACAA 59.483 50.000 41.52 0.00 43.02 2.41
1356 1465 0.179217 CACCGACGTCGACGATTACA 60.179 55.000 41.52 0.00 43.02 2.41
1357 1466 0.095245 TCACCGACGTCGACGATTAC 59.905 55.000 41.52 25.88 43.02 1.89
1358 1467 0.795698 TTCACCGACGTCGACGATTA 59.204 50.000 41.52 18.36 43.02 1.75
1359 1468 0.169672 ATTCACCGACGTCGACGATT 59.830 50.000 41.52 22.86 43.02 3.34
1360 1469 0.522705 CATTCACCGACGTCGACGAT 60.523 55.000 41.52 26.13 43.02 3.73
1361 1470 1.154357 CATTCACCGACGTCGACGA 60.154 57.895 41.52 28.18 43.02 4.20
1362 1471 2.774951 GCATTCACCGACGTCGACG 61.775 63.158 37.65 34.58 43.02 5.12
1363 1472 0.179181 TAGCATTCACCGACGTCGAC 60.179 55.000 37.65 17.09 43.02 4.20
1364 1473 0.736636 ATAGCATTCACCGACGTCGA 59.263 50.000 37.65 19.39 43.02 4.20
1365 1474 1.121240 GATAGCATTCACCGACGTCG 58.879 55.000 30.33 30.33 39.44 5.12
1366 1475 2.120232 CAGATAGCATTCACCGACGTC 58.880 52.381 5.18 5.18 0.00 4.34
1367 1476 1.802880 GCAGATAGCATTCACCGACGT 60.803 52.381 0.00 0.00 44.79 4.34
1368 1477 0.855349 GCAGATAGCATTCACCGACG 59.145 55.000 0.00 0.00 44.79 5.12
1379 1488 1.070445 AGACATCAGGCAGCAGATAGC 59.930 52.381 0.00 0.00 46.19 2.97
1380 1489 3.573538 AGTAGACATCAGGCAGCAGATAG 59.426 47.826 0.00 0.00 0.00 2.08
1381 1490 3.570540 AGTAGACATCAGGCAGCAGATA 58.429 45.455 0.00 0.00 0.00 1.98
1382 1491 2.396608 AGTAGACATCAGGCAGCAGAT 58.603 47.619 0.00 0.00 0.00 2.90
1383 1492 1.857965 AGTAGACATCAGGCAGCAGA 58.142 50.000 0.00 0.00 0.00 4.26
1384 1493 2.428530 TGTAGTAGACATCAGGCAGCAG 59.571 50.000 0.00 0.00 31.20 4.24
1385 1494 2.166459 GTGTAGTAGACATCAGGCAGCA 59.834 50.000 0.00 0.00 41.14 4.41
1386 1495 2.166459 TGTGTAGTAGACATCAGGCAGC 59.834 50.000 0.00 0.00 41.14 5.25
1387 1496 4.177026 GTTGTGTAGTAGACATCAGGCAG 58.823 47.826 0.29 0.00 41.14 4.85
1424 1533 0.754957 CACTTGGAGGCCCAACAACA 60.755 55.000 0.00 0.00 46.94 3.33
1460 1569 3.193479 CCACTTGAGGGAAATTTGCTACC 59.807 47.826 9.70 0.00 0.00 3.18
1540 1649 4.762289 TTGTTATTTGGTTGCAGGGTTT 57.238 36.364 0.00 0.00 0.00 3.27
1595 1704 7.626390 ACTAGTGCACCTATACAATTTACCAA 58.374 34.615 14.63 0.00 0.00 3.67
1712 1822 1.203523 TGCCGTTTGTGCTCACTTTTT 59.796 42.857 1.47 0.00 0.00 1.94
1731 1841 4.178540 CCTTGTTTCCTAGCATTGCAATG 58.821 43.478 30.92 30.92 39.40 2.82
1817 1927 3.346315 TGTTGCATGTTGAGGGATAGTG 58.654 45.455 0.00 0.00 0.00 2.74
1861 1971 4.056050 TCTCTTTGTTTGTTCTCCGCTAC 58.944 43.478 0.00 0.00 0.00 3.58
1877 1987 7.767659 GGTTTCGTACCCTACAATAATCTCTTT 59.232 37.037 0.00 0.00 41.43 2.52
2047 2158 9.848710 AATAGATGAATCTGAGATTGTGTGATT 57.151 29.630 13.18 4.26 37.76 2.57
2119 2240 2.619074 GCATAGGGGTTGCTTGACTCTT 60.619 50.000 0.00 0.00 37.14 2.85
2164 2292 2.685388 TGTTTTGGTGATCAACTTGCGA 59.315 40.909 12.94 0.00 34.67 5.10
2243 2373 7.440523 AAGGATTTGAGAACACTTGATGTAC 57.559 36.000 0.00 0.00 42.31 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.