Multiple sequence alignment - TraesCS6A01G133100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G133100 chr6A 100.000 3446 0 0 1 3446 105557626 105561071 0.000000e+00 6364
1 TraesCS6A01G133100 chr6D 90.575 2451 144 36 426 2819 87460225 87462645 0.000000e+00 3166
2 TraesCS6A01G133100 chr6D 94.149 188 9 1 1 186 87460025 87460212 5.630000e-73 285
3 TraesCS6A01G133100 chr6D 88.034 234 27 1 403 636 137542867 137543099 3.390000e-70 276
4 TraesCS6A01G133100 chr6B 90.430 2257 131 29 639 2847 166111940 166114159 0.000000e+00 2892
5 TraesCS6A01G133100 chr6B 96.205 527 19 1 2921 3446 6498880 6498354 0.000000e+00 861
6 TraesCS6A01G133100 chr6B 87.712 236 27 1 403 636 720479475 720479710 1.220000e-69 274
7 TraesCS6A01G133100 chr6B 89.796 98 10 0 1 98 619036720 619036817 3.610000e-25 126
8 TraesCS6A01G133100 chr4A 97.543 529 13 0 2918 3446 12181082 12181610 0.000000e+00 905
9 TraesCS6A01G133100 chr4A 97.358 530 14 0 2917 3446 717942954 717943483 0.000000e+00 902
10 TraesCS6A01G133100 chr4A 92.760 221 15 1 183 402 58348765 58348985 5.550000e-83 318
11 TraesCS6A01G133100 chr4A 90.171 234 23 0 406 639 444160138 444159905 4.320000e-79 305
12 TraesCS6A01G133100 chr4A 91.089 101 8 1 1 101 27678572 27678671 6.000000e-28 135
13 TraesCS6A01G133100 chr3A 97.363 531 14 0 2916 3446 691355479 691356009 0.000000e+00 904
14 TraesCS6A01G133100 chr3A 97.170 530 15 0 2917 3446 479448490 479449019 0.000000e+00 896
15 TraesCS6A01G133100 chr7A 96.975 529 14 2 2918 3446 40858072 40857546 0.000000e+00 887
16 TraesCS6A01G133100 chr7A 92.377 223 14 3 184 403 57210443 57210665 7.180000e-82 315
17 TraesCS6A01G133100 chr7A 90.830 229 19 2 185 412 641431414 641431641 4.320000e-79 305
18 TraesCS6A01G133100 chr1B 95.795 547 20 3 2902 3446 451600501 451601046 0.000000e+00 880
19 TraesCS6A01G133100 chr1B 93.151 219 14 1 185 402 336784890 336784672 1.540000e-83 320
20 TraesCS6A01G133100 chr1B 90.638 235 21 1 403 636 442201662 442201896 9.290000e-81 311
21 TraesCS6A01G133100 chr1B 83.673 245 32 8 2475 2715 676777498 676777258 1.240000e-54 224
22 TraesCS6A01G133100 chr3B 96.780 528 14 3 2921 3446 503967806 503967280 0.000000e+00 878
23 TraesCS6A01G133100 chr4B 96.893 515 16 0 2932 3446 287159924 287159410 0.000000e+00 863
24 TraesCS6A01G133100 chr7D 93.182 220 14 1 185 403 326052545 326052764 4.290000e-84 322
25 TraesCS6A01G133100 chr7D 87.137 241 30 1 403 642 555870383 555870623 4.380000e-69 272
26 TraesCS6A01G133100 chr3D 93.151 219 14 1 185 402 108290843 108291061 1.540000e-83 320
27 TraesCS6A01G133100 chr1D 92.760 221 14 2 184 403 46330817 46331036 5.550000e-83 318
28 TraesCS6A01G133100 chr1D 88.362 232 26 1 406 636 418308543 418308312 9.420000e-71 278
29 TraesCS6A01G133100 chr1D 85.556 270 29 9 176 441 291850065 291850328 1.220000e-69 274
30 TraesCS6A01G133100 chr1D 87.660 235 27 2 403 636 463550171 463550404 4.380000e-69 272
31 TraesCS6A01G133100 chr1D 83.673 245 32 7 2475 2715 486068885 486068645 1.240000e-54 224
32 TraesCS6A01G133100 chr2D 92.727 220 15 1 184 402 284559956 284560175 2.000000e-82 316
33 TraesCS6A01G133100 chr5D 92.342 222 16 1 184 404 421982366 421982587 7.180000e-82 315
34 TraesCS6A01G133100 chr5B 89.823 226 20 2 403 625 2803991 2803766 1.570000e-73 287
35 TraesCS6A01G133100 chr1A 83.265 245 33 7 2475 2715 583662003 583661763 5.790000e-53 219
36 TraesCS6A01G133100 chrUn 91.089 101 8 1 1 101 359715582 359715681 6.000000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G133100 chr6A 105557626 105561071 3445 False 6364.0 6364 100.000 1 3446 1 chr6A.!!$F1 3445
1 TraesCS6A01G133100 chr6D 87460025 87462645 2620 False 1725.5 3166 92.362 1 2819 2 chr6D.!!$F2 2818
2 TraesCS6A01G133100 chr6B 166111940 166114159 2219 False 2892.0 2892 90.430 639 2847 1 chr6B.!!$F1 2208
3 TraesCS6A01G133100 chr6B 6498354 6498880 526 True 861.0 861 96.205 2921 3446 1 chr6B.!!$R1 525
4 TraesCS6A01G133100 chr4A 12181082 12181610 528 False 905.0 905 97.543 2918 3446 1 chr4A.!!$F1 528
5 TraesCS6A01G133100 chr4A 717942954 717943483 529 False 902.0 902 97.358 2917 3446 1 chr4A.!!$F4 529
6 TraesCS6A01G133100 chr3A 691355479 691356009 530 False 904.0 904 97.363 2916 3446 1 chr3A.!!$F2 530
7 TraesCS6A01G133100 chr3A 479448490 479449019 529 False 896.0 896 97.170 2917 3446 1 chr3A.!!$F1 529
8 TraesCS6A01G133100 chr7A 40857546 40858072 526 True 887.0 887 96.975 2918 3446 1 chr7A.!!$R1 528
9 TraesCS6A01G133100 chr1B 451600501 451601046 545 False 880.0 880 95.795 2902 3446 1 chr1B.!!$F2 544
10 TraesCS6A01G133100 chr3B 503967280 503967806 526 True 878.0 878 96.780 2921 3446 1 chr3B.!!$R1 525
11 TraesCS6A01G133100 chr4B 287159410 287159924 514 True 863.0 863 96.893 2932 3446 1 chr4B.!!$R1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
719 724 0.108138 ATCCGCAAGTGACCTGCTAC 60.108 55.0 4.51 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2693 2751 0.319555 TTAGCGCGCTCACTTTCACT 60.32 50.0 40.23 12.72 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.307309 CAATGGCCCACCTGGATCA 59.693 57.895 0.00 0.00 37.39 2.92
187 190 9.993454 ACTTCCTTCGTTTTTATTTACTCTACT 57.007 29.630 0.00 0.00 0.00 2.57
189 192 8.992835 TCCTTCGTTTTTATTTACTCTACTCC 57.007 34.615 0.00 0.00 0.00 3.85
190 193 8.037166 TCCTTCGTTTTTATTTACTCTACTCCC 58.963 37.037 0.00 0.00 0.00 4.30
192 195 8.992835 TTCGTTTTTATTTACTCTACTCCCTC 57.007 34.615 0.00 0.00 0.00 4.30
193 196 7.550712 TCGTTTTTATTTACTCTACTCCCTCC 58.449 38.462 0.00 0.00 0.00 4.30
195 198 7.326454 GTTTTTATTTACTCTACTCCCTCCGT 58.674 38.462 0.00 0.00 0.00 4.69
196 199 7.486407 TTTTATTTACTCTACTCCCTCCGTT 57.514 36.000 0.00 0.00 0.00 4.44
197 200 7.486407 TTTATTTACTCTACTCCCTCCGTTT 57.514 36.000 0.00 0.00 0.00 3.60
198 201 5.595257 ATTTACTCTACTCCCTCCGTTTC 57.405 43.478 0.00 0.00 0.00 2.78
199 202 2.599408 ACTCTACTCCCTCCGTTTCA 57.401 50.000 0.00 0.00 0.00 2.69
200 203 2.448453 ACTCTACTCCCTCCGTTTCAG 58.552 52.381 0.00 0.00 0.00 3.02
201 204 2.225066 ACTCTACTCCCTCCGTTTCAGT 60.225 50.000 0.00 0.00 0.00 3.41
202 205 2.826725 CTCTACTCCCTCCGTTTCAGTT 59.173 50.000 0.00 0.00 0.00 3.16
203 206 3.236896 TCTACTCCCTCCGTTTCAGTTT 58.763 45.455 0.00 0.00 0.00 2.66
204 207 4.410099 TCTACTCCCTCCGTTTCAGTTTA 58.590 43.478 0.00 0.00 0.00 2.01
205 208 3.397849 ACTCCCTCCGTTTCAGTTTAC 57.602 47.619 0.00 0.00 0.00 2.01
206 209 2.701951 ACTCCCTCCGTTTCAGTTTACA 59.298 45.455 0.00 0.00 0.00 2.41
207 210 3.135167 ACTCCCTCCGTTTCAGTTTACAA 59.865 43.478 0.00 0.00 0.00 2.41
208 211 3.735591 TCCCTCCGTTTCAGTTTACAAG 58.264 45.455 0.00 0.00 0.00 3.16
209 212 3.135167 TCCCTCCGTTTCAGTTTACAAGT 59.865 43.478 0.00 0.00 0.00 3.16
210 213 3.497262 CCCTCCGTTTCAGTTTACAAGTC 59.503 47.826 0.00 0.00 0.00 3.01
211 214 3.497262 CCTCCGTTTCAGTTTACAAGTCC 59.503 47.826 0.00 0.00 0.00 3.85
212 215 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
213 216 5.510179 CCTCCGTTTCAGTTTACAAGTCCTA 60.510 44.000 0.00 0.00 0.00 2.94
214 217 5.291971 TCCGTTTCAGTTTACAAGTCCTAC 58.708 41.667 0.00 0.00 0.00 3.18
215 218 4.149396 CCGTTTCAGTTTACAAGTCCTACG 59.851 45.833 0.00 0.00 0.00 3.51
216 219 4.741676 CGTTTCAGTTTACAAGTCCTACGT 59.258 41.667 0.00 0.00 0.00 3.57
217 220 5.332055 CGTTTCAGTTTACAAGTCCTACGTG 60.332 44.000 0.00 0.00 33.76 4.49
218 221 4.924305 TCAGTTTACAAGTCCTACGTGT 57.076 40.909 0.00 4.18 43.02 4.49
219 222 6.389830 TTCAGTTTACAAGTCCTACGTGTA 57.610 37.500 0.00 2.37 40.98 2.90
220 223 6.579666 TCAGTTTACAAGTCCTACGTGTAT 57.420 37.500 0.00 0.00 41.34 2.29
221 224 7.686438 TCAGTTTACAAGTCCTACGTGTATA 57.314 36.000 0.00 0.77 41.34 1.47
222 225 7.530010 TCAGTTTACAAGTCCTACGTGTATAC 58.470 38.462 14.14 14.14 41.34 1.47
223 226 6.749118 CAGTTTACAAGTCCTACGTGTATACC 59.251 42.308 16.56 6.29 41.70 2.73
224 227 6.660949 AGTTTACAAGTCCTACGTGTATACCT 59.339 38.462 16.56 7.78 41.70 3.08
225 228 7.829211 AGTTTACAAGTCCTACGTGTATACCTA 59.171 37.037 16.56 0.00 41.70 3.08
226 229 7.792374 TTACAAGTCCTACGTGTATACCTAG 57.208 40.000 0.00 0.00 41.34 3.02
227 230 5.128919 ACAAGTCCTACGTGTATACCTAGG 58.871 45.833 7.41 7.41 38.97 3.02
228 231 5.128919 CAAGTCCTACGTGTATACCTAGGT 58.871 45.833 20.57 20.57 37.08 3.08
229 232 5.379706 AGTCCTACGTGTATACCTAGGTT 57.620 43.478 22.11 10.62 37.08 3.50
230 233 5.128919 AGTCCTACGTGTATACCTAGGTTG 58.871 45.833 22.11 6.11 37.08 3.77
231 234 4.884164 GTCCTACGTGTATACCTAGGTTGT 59.116 45.833 22.11 12.13 37.08 3.32
232 235 5.008118 GTCCTACGTGTATACCTAGGTTGTC 59.992 48.000 22.11 10.98 37.08 3.18
233 236 4.883585 CCTACGTGTATACCTAGGTTGTCA 59.116 45.833 22.11 13.47 33.45 3.58
234 237 5.357878 CCTACGTGTATACCTAGGTTGTCAA 59.642 44.000 22.11 0.75 33.45 3.18
235 238 5.927281 ACGTGTATACCTAGGTTGTCAAT 57.073 39.130 22.11 9.64 0.00 2.57
236 239 6.290294 ACGTGTATACCTAGGTTGTCAATT 57.710 37.500 22.11 4.57 0.00 2.32
237 240 6.704310 ACGTGTATACCTAGGTTGTCAATTT 58.296 36.000 22.11 0.00 0.00 1.82
238 241 7.163441 ACGTGTATACCTAGGTTGTCAATTTT 58.837 34.615 22.11 0.00 0.00 1.82
239 242 8.313292 ACGTGTATACCTAGGTTGTCAATTTTA 58.687 33.333 22.11 0.00 0.00 1.52
240 243 9.321562 CGTGTATACCTAGGTTGTCAATTTTAT 57.678 33.333 22.11 5.71 0.00 1.40
244 247 8.747538 ATACCTAGGTTGTCAATTTTATCACC 57.252 34.615 22.11 0.00 0.00 4.02
245 248 5.949952 ACCTAGGTTGTCAATTTTATCACCC 59.050 40.000 9.21 0.00 0.00 4.61
246 249 6.187682 CCTAGGTTGTCAATTTTATCACCCT 58.812 40.000 0.00 0.00 0.00 4.34
247 250 7.037153 ACCTAGGTTGTCAATTTTATCACCCTA 60.037 37.037 9.21 0.00 0.00 3.53
248 251 7.832187 CCTAGGTTGTCAATTTTATCACCCTAA 59.168 37.037 0.00 0.00 27.80 2.69
249 252 9.408648 CTAGGTTGTCAATTTTATCACCCTAAT 57.591 33.333 0.00 0.00 27.80 1.73
251 254 9.936329 AGGTTGTCAATTTTATCACCCTAATAT 57.064 29.630 0.00 0.00 0.00 1.28
348 351 9.806448 AATATATGGCTTGTATTATGTTGGTCA 57.194 29.630 1.35 0.00 0.00 4.02
349 352 9.806448 ATATATGGCTTGTATTATGTTGGTCAA 57.194 29.630 0.00 0.00 0.00 3.18
350 353 6.849085 ATGGCTTGTATTATGTTGGTCAAA 57.151 33.333 0.00 0.00 0.00 2.69
351 354 6.849085 TGGCTTGTATTATGTTGGTCAAAT 57.151 33.333 0.00 0.00 0.00 2.32
352 355 7.238486 TGGCTTGTATTATGTTGGTCAAATT 57.762 32.000 0.00 0.00 0.00 1.82
353 356 7.095910 TGGCTTGTATTATGTTGGTCAAATTG 58.904 34.615 0.00 0.00 0.00 2.32
354 357 7.039434 TGGCTTGTATTATGTTGGTCAAATTGA 60.039 33.333 0.00 0.00 0.00 2.57
355 358 7.275560 GGCTTGTATTATGTTGGTCAAATTGAC 59.724 37.037 17.16 17.16 46.23 3.18
365 368 2.629051 GTCAAATTGACGACCTAGGGG 58.371 52.381 14.81 7.16 37.67 4.79
366 369 1.065709 TCAAATTGACGACCTAGGGGC 60.066 52.381 14.81 3.61 35.63 5.80
367 370 0.988832 AAATTGACGACCTAGGGGCA 59.011 50.000 14.81 0.74 35.63 5.36
368 371 0.252197 AATTGACGACCTAGGGGCAC 59.748 55.000 14.81 2.61 35.63 5.01
369 372 1.956629 ATTGACGACCTAGGGGCACG 61.957 60.000 14.81 14.81 39.93 5.34
370 373 4.509737 GACGACCTAGGGGCACGC 62.510 72.222 14.81 6.25 43.76 5.34
383 386 3.707700 CACGCGCACGCCTTGTAA 61.708 61.111 5.73 0.00 45.53 2.41
384 387 2.968156 ACGCGCACGCCTTGTAAA 60.968 55.556 5.73 0.00 45.53 2.01
385 388 2.498887 CGCGCACGCCTTGTAAAC 60.499 61.111 8.75 0.00 37.98 2.01
386 389 2.943653 GCGCACGCCTTGTAAACT 59.056 55.556 0.30 0.00 34.56 2.66
387 390 1.619526 CGCGCACGCCTTGTAAACTA 61.620 55.000 8.75 0.00 37.98 2.24
388 391 0.513820 GCGCACGCCTTGTAAACTAA 59.486 50.000 0.30 0.00 34.56 2.24
389 392 1.463528 GCGCACGCCTTGTAAACTAAG 60.464 52.381 0.30 0.00 34.56 2.18
390 393 2.063266 CGCACGCCTTGTAAACTAAGA 58.937 47.619 0.00 0.00 0.00 2.10
391 394 2.092211 CGCACGCCTTGTAAACTAAGAG 59.908 50.000 0.00 0.00 0.00 2.85
392 395 3.323243 GCACGCCTTGTAAACTAAGAGA 58.677 45.455 0.00 0.00 0.00 3.10
393 396 3.368236 GCACGCCTTGTAAACTAAGAGAG 59.632 47.826 0.00 0.00 0.00 3.20
394 397 4.557205 CACGCCTTGTAAACTAAGAGAGT 58.443 43.478 0.00 0.00 41.56 3.24
395 398 4.386049 CACGCCTTGTAAACTAAGAGAGTG 59.614 45.833 0.00 0.00 38.87 3.51
396 399 3.927142 CGCCTTGTAAACTAAGAGAGTGG 59.073 47.826 0.00 0.00 38.87 4.00
397 400 4.254492 GCCTTGTAAACTAAGAGAGTGGG 58.746 47.826 0.00 0.00 38.87 4.61
398 401 4.020485 GCCTTGTAAACTAAGAGAGTGGGA 60.020 45.833 0.00 0.00 38.87 4.37
399 402 5.725362 CCTTGTAAACTAAGAGAGTGGGAG 58.275 45.833 0.00 0.00 38.87 4.30
400 403 5.246429 CCTTGTAAACTAAGAGAGTGGGAGT 59.754 44.000 0.00 0.00 38.87 3.85
401 404 6.436532 CCTTGTAAACTAAGAGAGTGGGAGTA 59.563 42.308 0.00 0.00 38.87 2.59
402 405 7.363094 CCTTGTAAACTAAGAGAGTGGGAGTAG 60.363 44.444 0.00 0.00 38.87 2.57
403 406 5.418209 TGTAAACTAAGAGAGTGGGAGTAGC 59.582 44.000 0.00 0.00 38.87 3.58
404 407 2.645802 ACTAAGAGAGTGGGAGTAGCG 58.354 52.381 0.00 0.00 36.87 4.26
405 408 2.026075 ACTAAGAGAGTGGGAGTAGCGT 60.026 50.000 0.00 0.00 36.87 5.07
406 409 2.803030 AAGAGAGTGGGAGTAGCGTA 57.197 50.000 0.00 0.00 0.00 4.42
407 410 3.300239 AAGAGAGTGGGAGTAGCGTAT 57.700 47.619 0.00 0.00 0.00 3.06
408 411 3.300239 AGAGAGTGGGAGTAGCGTATT 57.700 47.619 0.00 0.00 0.00 1.89
409 412 4.434545 AGAGAGTGGGAGTAGCGTATTA 57.565 45.455 0.00 0.00 0.00 0.98
410 413 4.988029 AGAGAGTGGGAGTAGCGTATTAT 58.012 43.478 0.00 0.00 0.00 1.28
411 414 6.124316 AGAGAGTGGGAGTAGCGTATTATA 57.876 41.667 0.00 0.00 0.00 0.98
412 415 6.174760 AGAGAGTGGGAGTAGCGTATTATAG 58.825 44.000 0.00 0.00 0.00 1.31
413 416 5.878627 AGAGTGGGAGTAGCGTATTATAGT 58.121 41.667 0.00 0.00 0.00 2.12
414 417 6.305411 AGAGTGGGAGTAGCGTATTATAGTT 58.695 40.000 0.00 0.00 0.00 2.24
415 418 6.207025 AGAGTGGGAGTAGCGTATTATAGTTG 59.793 42.308 0.00 0.00 0.00 3.16
416 419 6.066690 AGTGGGAGTAGCGTATTATAGTTGA 58.933 40.000 0.00 0.00 0.00 3.18
417 420 6.016443 AGTGGGAGTAGCGTATTATAGTTGAC 60.016 42.308 0.00 0.00 0.00 3.18
418 421 6.016443 GTGGGAGTAGCGTATTATAGTTGACT 60.016 42.308 0.00 0.00 0.00 3.41
419 422 6.016527 TGGGAGTAGCGTATTATAGTTGACTG 60.017 42.308 0.00 0.00 0.00 3.51
420 423 6.206243 GGGAGTAGCGTATTATAGTTGACTGA 59.794 42.308 0.00 0.00 0.00 3.41
421 424 7.255381 GGGAGTAGCGTATTATAGTTGACTGAA 60.255 40.741 0.00 0.00 0.00 3.02
422 425 7.804129 GGAGTAGCGTATTATAGTTGACTGAAG 59.196 40.741 0.00 0.00 0.00 3.02
423 426 8.223177 AGTAGCGTATTATAGTTGACTGAAGT 57.777 34.615 0.00 0.00 0.00 3.01
424 427 8.684520 AGTAGCGTATTATAGTTGACTGAAGTT 58.315 33.333 0.00 0.00 0.00 2.66
628 631 3.727780 ACGCGGACTAAATAAAAACCG 57.272 42.857 12.47 0.00 42.63 4.44
636 639 5.353400 GGACTAAATAAAAACCGAGGGAGTG 59.647 44.000 0.00 0.00 0.00 3.51
696 701 1.582610 GCCGGGCGAACTTCAATTCA 61.583 55.000 1.81 0.00 0.00 2.57
705 710 3.546815 CGAACTTCAATTCATGGATCCGC 60.547 47.826 7.39 0.00 0.00 5.54
706 711 3.003394 ACTTCAATTCATGGATCCGCA 57.997 42.857 7.39 0.00 0.00 5.69
719 724 0.108138 ATCCGCAAGTGACCTGCTAC 60.108 55.000 4.51 0.00 0.00 3.58
744 749 0.652071 GCTGGCGCCAAAAATTATGC 59.348 50.000 32.09 23.21 0.00 3.14
745 750 2.006056 GCTGGCGCCAAAAATTATGCA 61.006 47.619 32.09 1.95 0.00 3.96
767 772 2.951642 CAAGGAAAGTGACCTGCTGAAA 59.048 45.455 0.00 0.00 37.85 2.69
768 773 2.576615 AGGAAAGTGACCTGCTGAAAC 58.423 47.619 0.00 0.00 36.30 2.78
779 787 1.736681 CTGCTGAAACTGAAGCCTAGC 59.263 52.381 0.00 0.00 38.71 3.42
804 812 1.507141 GGTGTCACAACCAGCGGAAG 61.507 60.000 5.12 0.00 40.22 3.46
841 849 4.611355 CGATCACAAACGCAAATCTCAACT 60.611 41.667 0.00 0.00 0.00 3.16
934 942 6.257849 CGGATAACTAAAGCTAAGCAATCACA 59.742 38.462 0.00 0.00 0.00 3.58
952 960 2.585869 AAGAACTCACGCACGCACG 61.586 57.895 0.00 0.00 39.50 5.34
953 961 4.702826 GAACTCACGCACGCACGC 62.703 66.667 0.00 0.00 36.19 5.34
970 978 0.504384 CGCACACGAAGAACACAGAG 59.496 55.000 0.00 0.00 43.93 3.35
987 995 3.840666 ACAGAGACCAGAGGAGCATAAAA 59.159 43.478 0.00 0.00 0.00 1.52
1030 1038 0.594110 CCTCGCCTACTCGATCCTTC 59.406 60.000 0.00 0.00 37.87 3.46
1044 1052 0.469917 TCCTTCCGAATCCATGCTCC 59.530 55.000 0.00 0.00 0.00 4.70
1066 1074 1.550130 ATCCTTCTTCCCGCGTCCAA 61.550 55.000 4.92 0.00 0.00 3.53
1070 1078 0.464013 TTCTTCCCGCGTCCAACAAA 60.464 50.000 4.92 0.00 0.00 2.83
1071 1079 0.250553 TCTTCCCGCGTCCAACAAAT 60.251 50.000 4.92 0.00 0.00 2.32
1077 1085 1.500396 GCGTCCAACAAATCGACCC 59.500 57.895 0.00 0.00 0.00 4.46
1099 1107 0.685660 GTTCCTCCTGTCCTCGGTTT 59.314 55.000 0.00 0.00 0.00 3.27
1103 1111 1.228644 TCCTGTCCTCGGTTTCGGA 60.229 57.895 0.00 0.00 36.95 4.55
1105 1113 0.249398 CCTGTCCTCGGTTTCGGAAT 59.751 55.000 0.00 0.00 36.95 3.01
1123 1131 4.803426 CGAGGACGGGTGCTGCTC 62.803 72.222 0.00 0.00 35.72 4.26
1147 1155 2.892640 CGAGAAGATGCGGTGGGA 59.107 61.111 0.00 0.00 0.00 4.37
1383 1391 1.839424 GTATGGGCAAGTTCAAGGCT 58.161 50.000 0.00 0.00 0.00 4.58
1441 1449 2.698797 TCAGTTTCACTTCCTTCCGAGT 59.301 45.455 0.00 0.00 0.00 4.18
1442 1450 3.134081 TCAGTTTCACTTCCTTCCGAGTT 59.866 43.478 0.00 0.00 0.00 3.01
1443 1451 3.495001 CAGTTTCACTTCCTTCCGAGTTC 59.505 47.826 0.00 0.00 0.00 3.01
1444 1452 2.433868 TTCACTTCCTTCCGAGTTCG 57.566 50.000 0.00 0.00 39.44 3.95
1445 1453 1.612676 TCACTTCCTTCCGAGTTCGA 58.387 50.000 2.59 0.00 43.02 3.71
1446 1454 1.540267 TCACTTCCTTCCGAGTTCGAG 59.460 52.381 2.59 0.00 43.02 4.04
1447 1455 0.889306 ACTTCCTTCCGAGTTCGAGG 59.111 55.000 2.59 3.16 43.02 4.63
1448 1456 0.458716 CTTCCTTCCGAGTTCGAGGC 60.459 60.000 2.59 0.00 43.02 4.70
1449 1457 0.898789 TTCCTTCCGAGTTCGAGGCT 60.899 55.000 2.59 0.00 43.02 4.58
1498 1520 0.546122 TGGTTGGTCTGCAGACTGTT 59.454 50.000 38.17 0.00 44.20 3.16
1520 1542 2.202837 GGTACGACATGGCCGGAC 60.203 66.667 5.05 0.56 39.97 4.79
1525 1547 2.436646 GACATGGCCGGACTGGTG 60.437 66.667 9.82 7.70 41.21 4.17
1551 1573 2.435586 CGGCAGCCAGGTGAAGAG 60.436 66.667 13.30 0.00 0.00 2.85
1600 1622 0.534412 ACATCAGCGAGAAGGTCCTG 59.466 55.000 0.00 0.00 0.00 3.86
1663 1685 2.270527 GAGGAGAAGCTGGTGGCC 59.729 66.667 0.00 0.00 43.05 5.36
1820 1842 0.253327 GACCCTTGTCATCCAGGTCC 59.747 60.000 0.00 0.00 40.97 4.46
1832 1854 1.450312 CAGGTCCGACATTGCTCCC 60.450 63.158 0.00 0.00 0.00 4.30
1833 1855 1.918293 AGGTCCGACATTGCTCCCA 60.918 57.895 0.00 0.00 0.00 4.37
1841 1868 2.508526 GACATTGCTCCCACTTCAGTT 58.491 47.619 0.00 0.00 0.00 3.16
1844 1871 2.260844 TTGCTCCCACTTCAGTTCAG 57.739 50.000 0.00 0.00 0.00 3.02
1849 1876 1.971357 TCCCACTTCAGTTCAGTCTCC 59.029 52.381 0.00 0.00 0.00 3.71
1852 1879 3.433598 CCCACTTCAGTTCAGTCTCCAAA 60.434 47.826 0.00 0.00 0.00 3.28
1853 1880 4.392940 CCACTTCAGTTCAGTCTCCAAAT 58.607 43.478 0.00 0.00 0.00 2.32
1854 1881 4.214971 CCACTTCAGTTCAGTCTCCAAATG 59.785 45.833 0.00 0.00 0.00 2.32
1855 1882 4.214971 CACTTCAGTTCAGTCTCCAAATGG 59.785 45.833 0.00 0.00 0.00 3.16
1867 1896 5.942826 AGTCTCCAAATGGACTGAATTTCTC 59.057 40.000 0.00 0.00 40.71 2.87
1878 1907 4.322567 ACTGAATTTCTCTCCAGTCAAGC 58.677 43.478 0.00 0.00 35.15 4.01
1879 1908 4.202398 ACTGAATTTCTCTCCAGTCAAGCA 60.202 41.667 0.00 0.00 35.15 3.91
1881 1910 5.319453 TGAATTTCTCTCCAGTCAAGCAAT 58.681 37.500 0.00 0.00 0.00 3.56
1882 1911 6.475504 TGAATTTCTCTCCAGTCAAGCAATA 58.524 36.000 0.00 0.00 0.00 1.90
1884 1913 3.533606 TCTCTCCAGTCAAGCAATAGC 57.466 47.619 0.00 0.00 42.56 2.97
1886 1915 1.908619 TCTCCAGTCAAGCAATAGCCA 59.091 47.619 0.00 0.00 43.56 4.75
1887 1916 2.093288 TCTCCAGTCAAGCAATAGCCAG 60.093 50.000 0.00 0.00 43.56 4.85
1888 1917 0.737219 CCAGTCAAGCAATAGCCAGC 59.263 55.000 0.00 0.00 43.56 4.85
1889 1918 1.681166 CCAGTCAAGCAATAGCCAGCT 60.681 52.381 0.00 0.00 44.31 4.24
1890 1919 1.400846 CAGTCAAGCAATAGCCAGCTG 59.599 52.381 6.78 6.78 41.70 4.24
1891 1920 1.280133 AGTCAAGCAATAGCCAGCTGA 59.720 47.619 17.39 0.00 41.70 4.26
1910 1939 7.275888 AGCTGAACTGAACATCATTTTTACA 57.724 32.000 0.00 0.00 0.00 2.41
1911 1940 7.141363 AGCTGAACTGAACATCATTTTTACAC 58.859 34.615 0.00 0.00 0.00 2.90
1912 1941 7.013655 AGCTGAACTGAACATCATTTTTACACT 59.986 33.333 0.00 0.00 0.00 3.55
1916 1945 7.566760 ACTGAACATCATTTTTACACTGTGA 57.433 32.000 15.86 0.00 0.00 3.58
1917 1946 8.169977 ACTGAACATCATTTTTACACTGTGAT 57.830 30.769 15.86 1.48 0.00 3.06
1918 1947 9.283768 ACTGAACATCATTTTTACACTGTGATA 57.716 29.630 15.86 0.48 0.00 2.15
1923 1965 7.697710 ACATCATTTTTACACTGTGATAATGCG 59.302 33.333 15.86 12.72 0.00 4.73
2012 2054 1.680314 GCTCCTGAAAAGCCTGGGG 60.680 63.158 0.00 0.00 33.53 4.96
2100 2142 4.981415 ACGCAGTCGGTAAGTTCC 57.019 55.556 0.00 0.00 29.74 3.62
2111 2161 4.025145 GTCGGTAAGTTCCTTTGTCAACAG 60.025 45.833 0.00 0.00 0.00 3.16
2112 2162 3.875134 CGGTAAGTTCCTTTGTCAACAGT 59.125 43.478 0.00 0.00 0.00 3.55
2114 2164 5.050567 CGGTAAGTTCCTTTGTCAACAGTAC 60.051 44.000 0.00 0.00 0.00 2.73
2124 2174 3.717707 TGTCAACAGTACAGAAGACTGC 58.282 45.455 12.89 0.00 46.85 4.40
2133 2183 1.670811 ACAGAAGACTGCCAAAACACG 59.329 47.619 0.00 0.00 46.95 4.49
2214 2264 0.320771 CGGTCAAGGTGGTGAAGGAG 60.321 60.000 0.00 0.00 0.00 3.69
2320 2370 0.175989 GCTCAACCCTTACCTCGAGG 59.824 60.000 30.11 30.11 42.17 4.63
2325 2375 4.222847 CCTTACCTCGAGGCCGGC 62.223 72.222 31.56 21.18 39.32 6.13
2430 2480 1.369625 CCACCGGCAAAGTAGTCATC 58.630 55.000 0.00 0.00 0.00 2.92
2452 2502 2.705658 TCACCTGTTCCATGAGACACTT 59.294 45.455 0.00 0.00 0.00 3.16
2492 2542 5.415701 ACAAGTGATGTGTTTTTGTCAGAGT 59.584 36.000 0.00 0.00 41.93 3.24
2537 2587 6.092944 TGGATCGTGCGTATAAACAGAAAAAT 59.907 34.615 0.00 0.00 0.00 1.82
2560 2610 4.758773 TGTGATGTTATCAGAGATGGCA 57.241 40.909 0.00 0.00 40.53 4.92
2596 2650 8.898761 TGGCGTATTACAATGAACATAAATCTT 58.101 29.630 0.00 0.00 0.00 2.40
2637 2694 3.826157 CTGGCCTTTCACCATTCAGTTAA 59.174 43.478 3.32 0.00 36.36 2.01
2648 2705 6.072508 TCACCATTCAGTTAAGTTTCAGATGC 60.073 38.462 0.00 0.00 0.00 3.91
2693 2751 5.596361 TGTACTGCTTTCCTGAATTTCCAAA 59.404 36.000 0.00 0.00 0.00 3.28
2708 2766 0.384725 CCAAAGTGAAAGTGAGCGCG 60.385 55.000 0.00 0.00 0.00 6.86
2762 2833 6.583562 ACACCTTGATGATTAACTAGCCTAC 58.416 40.000 0.00 0.00 0.00 3.18
2763 2834 5.692204 CACCTTGATGATTAACTAGCCTACG 59.308 44.000 0.00 0.00 0.00 3.51
2847 2930 4.939509 CACCGGAAGTGGTTTAATGTAG 57.060 45.455 9.46 0.00 41.38 2.74
2848 2931 3.687698 CACCGGAAGTGGTTTAATGTAGG 59.312 47.826 9.46 0.00 41.38 3.18
2849 2932 3.275999 CCGGAAGTGGTTTAATGTAGGG 58.724 50.000 0.00 0.00 0.00 3.53
2850 2933 3.054948 CCGGAAGTGGTTTAATGTAGGGA 60.055 47.826 0.00 0.00 0.00 4.20
2851 2934 4.566070 CCGGAAGTGGTTTAATGTAGGGAA 60.566 45.833 0.00 0.00 0.00 3.97
2852 2935 4.393990 CGGAAGTGGTTTAATGTAGGGAAC 59.606 45.833 0.00 0.00 0.00 3.62
2867 2950 2.317530 GGAACCACTAGGCATCAGAC 57.682 55.000 0.00 0.00 39.06 3.51
2868 2951 1.834263 GGAACCACTAGGCATCAGACT 59.166 52.381 0.00 0.00 39.06 3.24
2869 2952 3.031736 GGAACCACTAGGCATCAGACTA 58.968 50.000 0.00 0.00 39.06 2.59
2882 2965 4.305769 CATCAGACTAGTGATGCTTAGCC 58.694 47.826 0.00 0.00 45.52 3.93
2883 2966 3.636679 TCAGACTAGTGATGCTTAGCCT 58.363 45.455 0.00 0.00 0.00 4.58
2884 2967 3.634448 TCAGACTAGTGATGCTTAGCCTC 59.366 47.826 0.00 1.56 0.00 4.70
2885 2968 2.962421 AGACTAGTGATGCTTAGCCTCC 59.038 50.000 0.00 0.00 0.00 4.30
2886 2969 2.036604 GACTAGTGATGCTTAGCCTCCC 59.963 54.545 0.00 0.00 0.00 4.30
2887 2970 1.000283 CTAGTGATGCTTAGCCTCCCG 60.000 57.143 0.29 0.00 0.00 5.14
2888 2971 0.978146 AGTGATGCTTAGCCTCCCGT 60.978 55.000 0.29 0.00 0.00 5.28
2889 2972 0.530870 GTGATGCTTAGCCTCCCGTC 60.531 60.000 0.29 0.00 0.00 4.79
2890 2973 0.975556 TGATGCTTAGCCTCCCGTCA 60.976 55.000 0.29 0.00 0.00 4.35
2891 2974 0.249657 GATGCTTAGCCTCCCGTCAG 60.250 60.000 0.29 0.00 0.00 3.51
2892 2975 0.687757 ATGCTTAGCCTCCCGTCAGA 60.688 55.000 0.29 0.00 0.00 3.27
2893 2976 0.687757 TGCTTAGCCTCCCGTCAGAT 60.688 55.000 0.29 0.00 0.00 2.90
2894 2977 0.032815 GCTTAGCCTCCCGTCAGATC 59.967 60.000 0.00 0.00 0.00 2.75
2895 2978 1.403814 CTTAGCCTCCCGTCAGATCA 58.596 55.000 0.00 0.00 0.00 2.92
2896 2979 1.339610 CTTAGCCTCCCGTCAGATCAG 59.660 57.143 0.00 0.00 0.00 2.90
2897 2980 0.259065 TAGCCTCCCGTCAGATCAGT 59.741 55.000 0.00 0.00 0.00 3.41
2898 2981 1.040339 AGCCTCCCGTCAGATCAGTC 61.040 60.000 0.00 0.00 0.00 3.51
2899 2982 1.730487 CCTCCCGTCAGATCAGTCG 59.270 63.158 0.00 0.00 0.00 4.18
2900 2983 0.748367 CCTCCCGTCAGATCAGTCGA 60.748 60.000 6.34 0.00 0.00 4.20
2901 2984 1.313772 CTCCCGTCAGATCAGTCGAT 58.686 55.000 6.34 0.00 33.31 3.59
2902 2985 1.678627 CTCCCGTCAGATCAGTCGATT 59.321 52.381 6.34 0.00 29.66 3.34
2903 2986 2.099921 CTCCCGTCAGATCAGTCGATTT 59.900 50.000 6.34 0.00 29.66 2.17
2904 2987 2.099263 TCCCGTCAGATCAGTCGATTTC 59.901 50.000 6.34 0.00 29.66 2.17
2905 2988 2.099921 CCCGTCAGATCAGTCGATTTCT 59.900 50.000 6.34 0.00 29.66 2.52
2906 2989 3.111838 CCGTCAGATCAGTCGATTTCTG 58.888 50.000 6.34 3.82 29.66 3.02
2907 2990 2.533535 CGTCAGATCAGTCGATTTCTGC 59.466 50.000 5.08 1.32 33.48 4.26
2908 2991 3.515630 GTCAGATCAGTCGATTTCTGCA 58.484 45.455 5.08 0.00 33.48 4.41
2909 2992 3.551082 GTCAGATCAGTCGATTTCTGCAG 59.449 47.826 7.63 7.63 33.48 4.41
2910 2993 3.194329 TCAGATCAGTCGATTTCTGCAGT 59.806 43.478 14.67 0.00 33.48 4.40
2911 2994 3.931468 CAGATCAGTCGATTTCTGCAGTT 59.069 43.478 14.67 0.00 33.48 3.16
2912 2995 5.105063 CAGATCAGTCGATTTCTGCAGTTA 58.895 41.667 14.67 3.12 33.48 2.24
2913 2996 5.005203 CAGATCAGTCGATTTCTGCAGTTAC 59.995 44.000 14.67 4.41 33.48 2.50
2914 2997 4.521130 TCAGTCGATTTCTGCAGTTACT 57.479 40.909 14.67 6.58 33.48 2.24
2915 2998 5.638596 TCAGTCGATTTCTGCAGTTACTA 57.361 39.130 14.67 0.00 33.48 1.82
2916 2999 5.641709 TCAGTCGATTTCTGCAGTTACTAG 58.358 41.667 14.67 2.73 33.48 2.57
2917 3000 5.183331 TCAGTCGATTTCTGCAGTTACTAGT 59.817 40.000 14.67 0.00 33.48 2.57
2918 3001 5.287274 CAGTCGATTTCTGCAGTTACTAGTG 59.713 44.000 14.67 5.97 0.00 2.74
2919 3002 5.047943 AGTCGATTTCTGCAGTTACTAGTGT 60.048 40.000 14.67 0.00 0.00 3.55
2920 3003 5.634020 GTCGATTTCTGCAGTTACTAGTGTT 59.366 40.000 14.67 0.00 0.00 3.32
2921 3004 6.805271 GTCGATTTCTGCAGTTACTAGTGTTA 59.195 38.462 14.67 0.00 0.00 2.41
2922 3005 7.327761 GTCGATTTCTGCAGTTACTAGTGTTAA 59.672 37.037 14.67 0.00 0.00 2.01
2923 3006 7.868922 TCGATTTCTGCAGTTACTAGTGTTAAA 59.131 33.333 14.67 2.43 0.00 1.52
2924 3007 7.950496 CGATTTCTGCAGTTACTAGTGTTAAAC 59.050 37.037 14.67 1.62 0.00 2.01
3125 3209 2.289444 GCCTACAGCCTACAAACTGTGA 60.289 50.000 5.93 0.00 46.31 3.58
3236 3321 4.700213 CCGAACAAAGTGATAATCCACCTT 59.300 41.667 0.00 0.00 37.76 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.945354 AAGCGTGATCCGTCGGATGT 61.945 55.000 31.02 9.60 43.27 3.06
49 50 1.969064 CAACAATTCCGGCCGGTCA 60.969 57.895 41.57 29.92 36.47 4.02
59 60 2.261361 GCACCGGCCCAACAATTC 59.739 61.111 0.00 0.00 0.00 2.17
139 142 9.865484 GAAGTTCAAATCTACACAACTAAACTC 57.135 33.333 0.00 0.00 0.00 3.01
186 189 3.396260 TGTAAACTGAAACGGAGGGAG 57.604 47.619 0.00 0.00 0.00 4.30
187 190 3.135167 ACTTGTAAACTGAAACGGAGGGA 59.865 43.478 0.00 0.00 0.00 4.20
188 191 3.473625 ACTTGTAAACTGAAACGGAGGG 58.526 45.455 0.00 0.00 0.00 4.30
189 192 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
190 193 4.377897 AGGACTTGTAAACTGAAACGGAG 58.622 43.478 0.00 0.00 0.00 4.63
192 195 4.149396 CGTAGGACTTGTAAACTGAAACGG 59.851 45.833 0.00 0.00 0.00 4.44
193 196 4.741676 ACGTAGGACTTGTAAACTGAAACG 59.258 41.667 0.00 0.00 0.00 3.60
195 198 5.663456 ACACGTAGGACTTGTAAACTGAAA 58.337 37.500 0.00 0.00 28.16 2.69
196 199 5.266733 ACACGTAGGACTTGTAAACTGAA 57.733 39.130 0.00 0.00 28.16 3.02
197 200 4.924305 ACACGTAGGACTTGTAAACTGA 57.076 40.909 0.00 0.00 28.16 3.41
198 201 6.749118 GGTATACACGTAGGACTTGTAAACTG 59.251 42.308 5.01 0.00 36.60 3.16
199 202 6.660949 AGGTATACACGTAGGACTTGTAAACT 59.339 38.462 5.01 0.00 36.60 2.66
200 203 6.856895 AGGTATACACGTAGGACTTGTAAAC 58.143 40.000 5.01 0.00 36.60 2.01
201 204 8.213518 CTAGGTATACACGTAGGACTTGTAAA 57.786 38.462 5.01 0.00 36.60 2.01
202 205 7.792374 CTAGGTATACACGTAGGACTTGTAA 57.208 40.000 5.01 0.00 36.60 2.41
211 214 6.441093 TTGACAACCTAGGTATACACGTAG 57.559 41.667 16.67 2.64 41.01 3.51
212 215 7.408756 AATTGACAACCTAGGTATACACGTA 57.591 36.000 16.67 1.63 0.00 3.57
213 216 5.927281 ATTGACAACCTAGGTATACACGT 57.073 39.130 16.67 5.81 0.00 4.49
214 217 7.605410 AAAATTGACAACCTAGGTATACACG 57.395 36.000 16.67 2.47 0.00 4.49
218 221 9.841295 GGTGATAAAATTGACAACCTAGGTATA 57.159 33.333 16.67 0.00 0.00 1.47
219 222 7.778382 GGGTGATAAAATTGACAACCTAGGTAT 59.222 37.037 16.67 6.57 37.18 2.73
220 223 7.037153 AGGGTGATAAAATTGACAACCTAGGTA 60.037 37.037 16.67 0.00 46.75 3.08
221 224 5.949952 GGGTGATAAAATTGACAACCTAGGT 59.050 40.000 9.21 9.21 37.18 3.08
222 225 6.187682 AGGGTGATAAAATTGACAACCTAGG 58.812 40.000 7.41 7.41 46.75 3.02
322 325 9.806448 TGACCAACATAATACAAGCCATATATT 57.194 29.630 0.00 0.00 0.00 1.28
323 326 9.806448 TTGACCAACATAATACAAGCCATATAT 57.194 29.630 0.00 0.00 0.00 0.86
324 327 9.634021 TTTGACCAACATAATACAAGCCATATA 57.366 29.630 0.00 0.00 0.00 0.86
325 328 8.532186 TTTGACCAACATAATACAAGCCATAT 57.468 30.769 0.00 0.00 0.00 1.78
326 329 7.946381 TTTGACCAACATAATACAAGCCATA 57.054 32.000 0.00 0.00 0.00 2.74
327 330 6.849085 TTTGACCAACATAATACAAGCCAT 57.151 33.333 0.00 0.00 0.00 4.40
328 331 6.849085 ATTTGACCAACATAATACAAGCCA 57.151 33.333 0.00 0.00 0.00 4.75
329 332 7.275560 GTCAATTTGACCAACATAATACAAGCC 59.724 37.037 17.07 0.00 41.37 4.35
330 333 7.008266 CGTCAATTTGACCAACATAATACAAGC 59.992 37.037 20.87 0.00 44.20 4.01
331 334 8.233868 TCGTCAATTTGACCAACATAATACAAG 58.766 33.333 20.87 4.88 44.20 3.16
332 335 8.018520 GTCGTCAATTTGACCAACATAATACAA 58.981 33.333 20.87 0.00 44.20 2.41
333 336 7.523219 GTCGTCAATTTGACCAACATAATACA 58.477 34.615 20.87 0.00 44.20 2.29
334 337 7.948513 GTCGTCAATTTGACCAACATAATAC 57.051 36.000 20.87 5.03 44.20 1.89
345 348 2.629051 CCCCTAGGTCGTCAATTTGAC 58.371 52.381 17.76 17.76 43.65 3.18
346 349 1.065709 GCCCCTAGGTCGTCAATTTGA 60.066 52.381 8.29 0.00 34.57 2.69
347 350 1.339631 TGCCCCTAGGTCGTCAATTTG 60.340 52.381 8.29 0.00 34.57 2.32
348 351 0.988832 TGCCCCTAGGTCGTCAATTT 59.011 50.000 8.29 0.00 34.57 1.82
349 352 0.252197 GTGCCCCTAGGTCGTCAATT 59.748 55.000 8.29 0.00 34.57 2.32
350 353 1.905512 GTGCCCCTAGGTCGTCAAT 59.094 57.895 8.29 0.00 34.57 2.57
351 354 2.642254 CGTGCCCCTAGGTCGTCAA 61.642 63.158 8.29 0.00 34.57 3.18
352 355 3.066190 CGTGCCCCTAGGTCGTCA 61.066 66.667 8.29 0.00 34.57 4.35
353 356 4.509737 GCGTGCCCCTAGGTCGTC 62.510 72.222 8.29 0.00 35.88 4.20
366 369 3.230005 TTTACAAGGCGTGCGCGTG 62.230 57.895 22.18 14.14 43.06 5.34
367 370 2.968156 TTTACAAGGCGTGCGCGT 60.968 55.556 22.18 8.25 43.06 6.01
368 371 1.619526 TAGTTTACAAGGCGTGCGCG 61.620 55.000 16.86 16.86 43.06 6.86
369 372 0.513820 TTAGTTTACAAGGCGTGCGC 59.486 50.000 8.17 8.17 41.06 6.09
370 373 2.063266 TCTTAGTTTACAAGGCGTGCG 58.937 47.619 0.00 0.00 0.00 5.34
371 374 3.323243 TCTCTTAGTTTACAAGGCGTGC 58.677 45.455 0.00 0.00 0.00 5.34
372 375 4.386049 CACTCTCTTAGTTTACAAGGCGTG 59.614 45.833 0.00 0.00 35.76 5.34
373 376 4.557205 CACTCTCTTAGTTTACAAGGCGT 58.443 43.478 0.00 0.00 35.76 5.68
374 377 3.927142 CCACTCTCTTAGTTTACAAGGCG 59.073 47.826 0.00 0.00 35.76 5.52
375 378 4.020485 TCCCACTCTCTTAGTTTACAAGGC 60.020 45.833 0.00 0.00 35.76 4.35
376 379 5.246429 ACTCCCACTCTCTTAGTTTACAAGG 59.754 44.000 0.00 0.00 35.76 3.61
377 380 6.347859 ACTCCCACTCTCTTAGTTTACAAG 57.652 41.667 0.00 0.00 35.76 3.16
378 381 6.071503 GCTACTCCCACTCTCTTAGTTTACAA 60.072 42.308 0.00 0.00 35.76 2.41
379 382 5.418209 GCTACTCCCACTCTCTTAGTTTACA 59.582 44.000 0.00 0.00 35.76 2.41
380 383 5.448904 CGCTACTCCCACTCTCTTAGTTTAC 60.449 48.000 0.00 0.00 35.76 2.01
381 384 4.639310 CGCTACTCCCACTCTCTTAGTTTA 59.361 45.833 0.00 0.00 35.76 2.01
382 385 3.444388 CGCTACTCCCACTCTCTTAGTTT 59.556 47.826 0.00 0.00 35.76 2.66
383 386 3.018149 CGCTACTCCCACTCTCTTAGTT 58.982 50.000 0.00 0.00 35.76 2.24
384 387 2.026075 ACGCTACTCCCACTCTCTTAGT 60.026 50.000 0.00 0.00 39.81 2.24
385 388 2.645802 ACGCTACTCCCACTCTCTTAG 58.354 52.381 0.00 0.00 0.00 2.18
386 389 2.803030 ACGCTACTCCCACTCTCTTA 57.197 50.000 0.00 0.00 0.00 2.10
387 390 2.803030 TACGCTACTCCCACTCTCTT 57.197 50.000 0.00 0.00 0.00 2.85
388 391 3.300239 AATACGCTACTCCCACTCTCT 57.700 47.619 0.00 0.00 0.00 3.10
389 392 5.939296 ACTATAATACGCTACTCCCACTCTC 59.061 44.000 0.00 0.00 0.00 3.20
390 393 5.878627 ACTATAATACGCTACTCCCACTCT 58.121 41.667 0.00 0.00 0.00 3.24
391 394 6.206243 TCAACTATAATACGCTACTCCCACTC 59.794 42.308 0.00 0.00 0.00 3.51
392 395 6.016443 GTCAACTATAATACGCTACTCCCACT 60.016 42.308 0.00 0.00 0.00 4.00
393 396 6.016443 AGTCAACTATAATACGCTACTCCCAC 60.016 42.308 0.00 0.00 0.00 4.61
394 397 6.016527 CAGTCAACTATAATACGCTACTCCCA 60.017 42.308 0.00 0.00 0.00 4.37
395 398 6.206243 TCAGTCAACTATAATACGCTACTCCC 59.794 42.308 0.00 0.00 0.00 4.30
396 399 7.199541 TCAGTCAACTATAATACGCTACTCC 57.800 40.000 0.00 0.00 0.00 3.85
397 400 8.344098 ACTTCAGTCAACTATAATACGCTACTC 58.656 37.037 0.00 0.00 0.00 2.59
398 401 8.223177 ACTTCAGTCAACTATAATACGCTACT 57.777 34.615 0.00 0.00 0.00 2.57
399 402 8.853469 AACTTCAGTCAACTATAATACGCTAC 57.147 34.615 0.00 0.00 0.00 3.58
401 404 9.865321 TTTAACTTCAGTCAACTATAATACGCT 57.135 29.630 0.00 0.00 0.00 5.07
402 405 9.897349 GTTTAACTTCAGTCAACTATAATACGC 57.103 33.333 0.00 0.00 0.00 4.42
591 594 8.031848 AGTCCGCGTATTAACTTTAATCAAAA 57.968 30.769 4.92 0.00 35.20 2.44
603 606 7.276658 TCGGTTTTTATTTAGTCCGCGTATTAA 59.723 33.333 4.92 0.00 38.18 1.40
611 614 4.506758 TCCCTCGGTTTTTATTTAGTCCG 58.493 43.478 0.00 0.00 39.40 4.79
696 701 0.107508 CAGGTCACTTGCGGATCCAT 60.108 55.000 13.41 0.00 0.00 3.41
705 710 2.846371 GCAGGTAGCAGGTCACTTG 58.154 57.895 0.00 0.00 44.79 3.16
744 749 1.605710 CAGCAGGTCACTTTCCTTGTG 59.394 52.381 0.00 0.00 36.82 3.33
745 750 1.490490 TCAGCAGGTCACTTTCCTTGT 59.510 47.619 0.00 0.00 32.37 3.16
767 772 1.601171 CTGGCTGCTAGGCTTCAGT 59.399 57.895 4.94 0.00 41.96 3.41
768 773 1.153208 CCTGGCTGCTAGGCTTCAG 60.153 63.158 19.47 6.01 41.96 3.02
779 787 1.152984 TGGTTGTGACACCTGGCTG 60.153 57.895 2.45 0.00 37.75 4.85
804 812 3.926616 TGTGATCGAAGGAAGGAGAAAC 58.073 45.455 0.00 0.00 0.00 2.78
841 849 2.912542 CGGCTGCGGGAGGATCTA 60.913 66.667 0.00 0.00 33.73 1.98
934 942 2.585869 CGTGCGTGCGTGAGTTCTT 61.586 57.895 0.00 0.00 0.00 2.52
952 960 1.523095 GTCTCTGTGTTCTTCGTGTGC 59.477 52.381 0.00 0.00 0.00 4.57
953 961 2.128035 GGTCTCTGTGTTCTTCGTGTG 58.872 52.381 0.00 0.00 0.00 3.82
954 962 1.754803 TGGTCTCTGTGTTCTTCGTGT 59.245 47.619 0.00 0.00 0.00 4.49
955 963 2.034685 TCTGGTCTCTGTGTTCTTCGTG 59.965 50.000 0.00 0.00 0.00 4.35
987 995 5.593679 ATGCTTGCATCTTGCTAATCTTT 57.406 34.783 1.81 0.00 45.31 2.52
994 1002 1.749634 GAGGAATGCTTGCATCTTGCT 59.250 47.619 8.64 5.69 45.31 3.91
995 1003 1.533338 CGAGGAATGCTTGCATCTTGC 60.533 52.381 8.64 0.75 45.29 4.01
996 1004 1.533338 GCGAGGAATGCTTGCATCTTG 60.533 52.381 9.22 7.66 0.00 3.02
1030 1038 1.610102 GGATCTGGAGCATGGATTCGG 60.610 57.143 0.00 0.00 0.00 4.30
1044 1052 0.528684 GACGCGGGAAGAAGGATCTG 60.529 60.000 12.47 0.00 35.59 2.90
1066 1074 1.003233 GAGGAACTGGGGTCGATTTGT 59.997 52.381 0.00 0.00 41.55 2.83
1070 1078 0.978146 CAGGAGGAACTGGGGTCGAT 60.978 60.000 0.00 0.00 41.55 3.59
1071 1079 1.609501 CAGGAGGAACTGGGGTCGA 60.610 63.158 0.00 0.00 41.55 4.20
1077 1085 1.608717 CCGAGGACAGGAGGAACTGG 61.609 65.000 0.00 0.00 41.55 4.00
1099 1107 2.044650 ACCCGTCCTCGATTCCGA 60.045 61.111 0.00 0.00 43.35 4.55
1103 1111 2.579201 CAGCACCCGTCCTCGATT 59.421 61.111 0.00 0.00 39.71 3.34
1123 1131 2.892425 GCATCTTCTCGCGGTGGG 60.892 66.667 6.13 0.00 0.00 4.61
1131 1139 1.519455 CGTCCCACCGCATCTTCTC 60.519 63.158 0.00 0.00 0.00 2.87
1353 1361 2.588877 CCCATACGCCGCTTGGAG 60.589 66.667 7.42 0.00 38.72 3.86
1383 1391 2.361771 GGGAGTGGGGAGTCGGTA 59.638 66.667 0.00 0.00 0.00 4.02
1443 1451 0.102120 ATCAAGAGCTCGAAGCCTCG 59.898 55.000 8.37 0.00 43.77 4.63
1444 1452 2.307934 AATCAAGAGCTCGAAGCCTC 57.692 50.000 8.37 2.04 43.77 4.70
1445 1453 2.027745 TCAAATCAAGAGCTCGAAGCCT 60.028 45.455 8.37 0.00 43.77 4.58
1446 1454 2.350522 TCAAATCAAGAGCTCGAAGCC 58.649 47.619 8.37 0.00 43.77 4.35
1447 1455 3.620374 TGATCAAATCAAGAGCTCGAAGC 59.380 43.478 8.37 0.00 37.70 3.86
1448 1456 4.869297 AGTGATCAAATCAAGAGCTCGAAG 59.131 41.667 8.37 2.27 41.69 3.79
1449 1457 4.825422 AGTGATCAAATCAAGAGCTCGAA 58.175 39.130 8.37 0.00 41.69 3.71
1498 1520 2.363975 GGCCATGTCGTACCCTGGA 61.364 63.158 0.00 0.00 0.00 3.86
1520 1542 2.358737 GCCGACCTTGACCACCAG 60.359 66.667 0.00 0.00 0.00 4.00
1525 1547 4.329545 TGGCTGCCGACCTTGACC 62.330 66.667 14.98 0.00 0.00 4.02
1600 1622 1.002011 GAACTGCTTGGGTCCCTCC 60.002 63.158 10.00 0.00 0.00 4.30
1663 1685 1.094073 CGATGCTCTTGGGCTTGAGG 61.094 60.000 0.00 0.00 0.00 3.86
1820 1842 1.081892 CTGAAGTGGGAGCAATGTCG 58.918 55.000 0.00 0.00 0.00 4.35
1832 1854 4.214971 CCATTTGGAGACTGAACTGAAGTG 59.785 45.833 0.00 0.00 37.39 3.16
1833 1855 4.103153 TCCATTTGGAGACTGAACTGAAGT 59.897 41.667 0.00 0.00 39.78 3.01
1844 1871 5.942826 AGAGAAATTCAGTCCATTTGGAGAC 59.057 40.000 0.00 0.00 46.49 3.36
1849 1876 5.709164 ACTGGAGAGAAATTCAGTCCATTTG 59.291 40.000 14.28 7.81 36.71 2.32
1852 1879 5.096443 GACTGGAGAGAAATTCAGTCCAT 57.904 43.478 14.28 7.25 46.00 3.41
1853 1880 4.543590 GACTGGAGAGAAATTCAGTCCA 57.456 45.455 13.51 13.51 46.00 4.02
1867 1896 2.286872 CTGGCTATTGCTTGACTGGAG 58.713 52.381 0.00 0.00 39.59 3.86
1877 1906 1.742761 TCAGTTCAGCTGGCTATTGC 58.257 50.000 15.13 0.00 45.08 3.56
1878 1907 3.076621 TGTTCAGTTCAGCTGGCTATTG 58.923 45.455 15.13 7.16 45.08 1.90
1879 1908 3.423539 TGTTCAGTTCAGCTGGCTATT 57.576 42.857 15.13 0.00 45.08 1.73
1881 1910 2.302733 TGATGTTCAGTTCAGCTGGCTA 59.697 45.455 15.13 0.00 45.08 3.93
1882 1911 1.072806 TGATGTTCAGTTCAGCTGGCT 59.927 47.619 15.13 9.86 45.08 4.75
1884 1913 4.778534 AAATGATGTTCAGTTCAGCTGG 57.221 40.909 15.13 0.00 45.08 4.85
1886 1915 7.013655 AGTGTAAAAATGATGTTCAGTTCAGCT 59.986 33.333 0.00 0.00 33.14 4.24
1887 1916 7.113965 CAGTGTAAAAATGATGTTCAGTTCAGC 59.886 37.037 0.00 0.00 33.14 4.26
1888 1917 8.131100 ACAGTGTAAAAATGATGTTCAGTTCAG 58.869 33.333 0.00 0.00 33.14 3.02
1889 1918 7.914871 CACAGTGTAAAAATGATGTTCAGTTCA 59.085 33.333 0.00 0.00 33.14 3.18
1890 1919 8.128582 TCACAGTGTAAAAATGATGTTCAGTTC 58.871 33.333 0.00 0.00 33.14 3.01
1891 1920 7.995289 TCACAGTGTAAAAATGATGTTCAGTT 58.005 30.769 0.00 0.00 36.10 3.16
1907 1936 6.019075 GCTTCATTACGCATTATCACAGTGTA 60.019 38.462 0.00 0.00 0.00 2.90
1908 1937 5.220662 GCTTCATTACGCATTATCACAGTGT 60.221 40.000 0.00 0.00 0.00 3.55
1909 1938 5.007039 AGCTTCATTACGCATTATCACAGTG 59.993 40.000 0.00 0.00 0.00 3.66
1910 1939 5.007039 CAGCTTCATTACGCATTATCACAGT 59.993 40.000 0.00 0.00 0.00 3.55
1911 1940 5.438117 CAGCTTCATTACGCATTATCACAG 58.562 41.667 0.00 0.00 0.00 3.66
1912 1941 4.273235 CCAGCTTCATTACGCATTATCACA 59.727 41.667 0.00 0.00 0.00 3.58
1916 1945 2.224079 CGCCAGCTTCATTACGCATTAT 59.776 45.455 0.00 0.00 0.00 1.28
1917 1946 1.597195 CGCCAGCTTCATTACGCATTA 59.403 47.619 0.00 0.00 0.00 1.90
1918 1947 0.378257 CGCCAGCTTCATTACGCATT 59.622 50.000 0.00 0.00 0.00 3.56
1920 1949 0.672091 TTCGCCAGCTTCATTACGCA 60.672 50.000 0.00 0.00 0.00 5.24
1923 1965 3.905900 GCTTCGCCAGCTTCATTAC 57.094 52.632 0.00 0.00 46.27 1.89
1976 2018 3.672295 CTCCAGCTTCGGGGTGCTC 62.672 68.421 0.00 0.00 41.62 4.26
2100 2142 5.277058 GCAGTCTTCTGTACTGTTGACAAAG 60.277 44.000 20.12 14.09 45.01 2.77
2111 2161 3.303132 CGTGTTTTGGCAGTCTTCTGTAC 60.303 47.826 0.00 0.00 43.05 2.90
2112 2162 2.869801 CGTGTTTTGGCAGTCTTCTGTA 59.130 45.455 0.00 0.00 43.05 2.74
2114 2164 1.597937 GCGTGTTTTGGCAGTCTTCTG 60.598 52.381 0.00 0.00 43.87 3.02
2124 2174 1.145162 GCTTGGTGTGCGTGTTTTGG 61.145 55.000 0.00 0.00 0.00 3.28
2133 2183 1.291877 CGGACTACTGCTTGGTGTGC 61.292 60.000 0.00 0.00 0.00 4.57
2325 2375 1.966451 GACCACCGGCTTCACCTTG 60.966 63.158 0.00 0.00 35.61 3.61
2452 2502 6.280855 TCACTTGTGCTAGCTATTTACAGA 57.719 37.500 17.23 2.71 0.00 3.41
2489 2539 8.296713 TCCAACAAATATTTGCTCAGTAAACTC 58.703 33.333 24.82 0.00 41.79 3.01
2492 2542 7.967854 CGATCCAACAAATATTTGCTCAGTAAA 59.032 33.333 24.82 6.23 41.79 2.01
2537 2587 6.042437 ACTGCCATCTCTGATAACATCACATA 59.958 38.462 0.00 0.00 35.06 2.29
2560 2610 3.368248 TGTAATACGCCAGGAACCTACT 58.632 45.455 0.00 0.00 0.00 2.57
2598 2652 3.572255 GGCCAGGTACAGATTGAACAAAA 59.428 43.478 0.00 0.00 0.00 2.44
2637 2694 3.893813 AGCCTTTTGAAGCATCTGAAACT 59.106 39.130 0.00 0.00 0.00 2.66
2648 2705 3.425162 ACCCTCTGTAGCCTTTTGAAG 57.575 47.619 0.00 0.00 0.00 3.02
2693 2751 0.319555 TTAGCGCGCTCACTTTCACT 60.320 50.000 40.23 12.72 0.00 3.41
2708 2766 4.327854 CGATTGCCTCGGAATAATTAGC 57.672 45.455 0.00 0.00 43.82 3.09
2762 2833 5.475719 TGATCCTAATAAAATCCTACCGCG 58.524 41.667 0.00 0.00 0.00 6.46
2763 2834 6.698380 TCTGATCCTAATAAAATCCTACCGC 58.302 40.000 0.00 0.00 0.00 5.68
2793 2876 5.886960 AGGCACTGTAATCATTCAAGTTC 57.113 39.130 0.00 0.00 37.18 3.01
2842 2925 2.263895 TGCCTAGTGGTTCCCTACAT 57.736 50.000 0.00 0.00 35.27 2.29
2847 2930 1.134371 GTCTGATGCCTAGTGGTTCCC 60.134 57.143 0.00 0.00 35.27 3.97
2848 2931 1.834263 AGTCTGATGCCTAGTGGTTCC 59.166 52.381 0.00 0.00 35.27 3.62
2849 2932 3.702045 ACTAGTCTGATGCCTAGTGGTTC 59.298 47.826 5.85 0.00 41.68 3.62
2850 2933 3.714144 ACTAGTCTGATGCCTAGTGGTT 58.286 45.455 5.85 0.00 41.68 3.67
2851 2934 3.390175 ACTAGTCTGATGCCTAGTGGT 57.610 47.619 5.85 0.00 41.68 4.16
2861 2944 4.222336 AGGCTAAGCATCACTAGTCTGAT 58.778 43.478 6.22 0.00 0.00 2.90
2862 2945 3.634448 GAGGCTAAGCATCACTAGTCTGA 59.366 47.826 6.22 0.00 39.28 3.27
2863 2946 3.243704 GGAGGCTAAGCATCACTAGTCTG 60.244 52.174 0.00 0.00 41.39 3.51
2864 2947 2.962421 GGAGGCTAAGCATCACTAGTCT 59.038 50.000 0.00 0.00 41.39 3.24
2865 2948 2.036604 GGGAGGCTAAGCATCACTAGTC 59.963 54.545 0.00 0.00 39.81 2.59
2866 2949 2.043227 GGGAGGCTAAGCATCACTAGT 58.957 52.381 0.00 0.00 39.81 2.57
2867 2950 1.000283 CGGGAGGCTAAGCATCACTAG 60.000 57.143 0.00 0.00 40.84 2.57
2868 2951 1.040646 CGGGAGGCTAAGCATCACTA 58.959 55.000 0.00 0.00 40.84 2.74
2869 2952 0.978146 ACGGGAGGCTAAGCATCACT 60.978 55.000 0.00 0.00 40.84 3.41
2870 2953 0.530870 GACGGGAGGCTAAGCATCAC 60.531 60.000 0.00 0.00 41.39 3.06
2871 2954 0.975556 TGACGGGAGGCTAAGCATCA 60.976 55.000 0.00 0.00 41.39 3.07
2872 2955 0.249657 CTGACGGGAGGCTAAGCATC 60.250 60.000 0.00 0.00 40.05 3.91
2873 2956 0.687757 TCTGACGGGAGGCTAAGCAT 60.688 55.000 0.00 0.00 40.05 3.79
2874 2957 0.687757 ATCTGACGGGAGGCTAAGCA 60.688 55.000 0.00 0.00 40.05 3.91
2875 2958 0.032815 GATCTGACGGGAGGCTAAGC 59.967 60.000 0.00 0.00 40.05 3.09
2876 2959 1.339610 CTGATCTGACGGGAGGCTAAG 59.660 57.143 0.00 0.00 40.05 2.18
2877 2960 1.342076 ACTGATCTGACGGGAGGCTAA 60.342 52.381 6.60 0.00 40.05 3.09
2878 2961 0.259065 ACTGATCTGACGGGAGGCTA 59.741 55.000 6.60 0.00 40.05 3.93
2879 2962 1.000993 ACTGATCTGACGGGAGGCT 59.999 57.895 6.60 0.00 40.05 4.58
2880 2963 1.439644 GACTGATCTGACGGGAGGC 59.560 63.158 6.60 0.00 39.51 4.70
2881 2964 0.748367 TCGACTGATCTGACGGGAGG 60.748 60.000 20.17 0.00 0.00 4.30
2882 2965 1.313772 ATCGACTGATCTGACGGGAG 58.686 55.000 20.17 0.00 0.00 4.30
2883 2966 1.763968 AATCGACTGATCTGACGGGA 58.236 50.000 20.17 6.50 32.24 5.14
2884 2967 2.099921 AGAAATCGACTGATCTGACGGG 59.900 50.000 20.17 2.33 32.24 5.28
2885 2968 3.111838 CAGAAATCGACTGATCTGACGG 58.888 50.000 20.17 6.23 37.54 4.79
2886 2969 2.533535 GCAGAAATCGACTGATCTGACG 59.466 50.000 15.95 15.95 37.54 4.35
2887 2970 3.515630 TGCAGAAATCGACTGATCTGAC 58.484 45.455 17.71 11.49 37.54 3.51
2888 2971 3.194329 ACTGCAGAAATCGACTGATCTGA 59.806 43.478 23.35 6.65 37.54 3.27
2889 2972 3.519579 ACTGCAGAAATCGACTGATCTG 58.480 45.455 23.35 9.32 37.54 2.90
2890 2973 3.883830 ACTGCAGAAATCGACTGATCT 57.116 42.857 23.35 0.00 37.54 2.75
2891 2974 5.105752 AGTAACTGCAGAAATCGACTGATC 58.894 41.667 23.35 0.00 37.54 2.92
2892 2975 5.078411 AGTAACTGCAGAAATCGACTGAT 57.922 39.130 23.35 0.00 37.54 2.90
2893 2976 4.521130 AGTAACTGCAGAAATCGACTGA 57.479 40.909 23.35 0.00 37.54 3.41
2894 2977 5.287274 CACTAGTAACTGCAGAAATCGACTG 59.713 44.000 23.35 10.19 38.27 3.51
2895 2978 5.047943 ACACTAGTAACTGCAGAAATCGACT 60.048 40.000 23.35 14.81 0.00 4.18
2896 2979 5.162075 ACACTAGTAACTGCAGAAATCGAC 58.838 41.667 23.35 8.35 0.00 4.20
2897 2980 5.386958 ACACTAGTAACTGCAGAAATCGA 57.613 39.130 23.35 3.44 0.00 3.59
2898 2981 7.576750 TTAACACTAGTAACTGCAGAAATCG 57.423 36.000 23.35 6.02 0.00 3.34
2899 2982 8.770828 TGTTTAACACTAGTAACTGCAGAAATC 58.229 33.333 23.35 7.72 0.00 2.17
2900 2983 8.671384 TGTTTAACACTAGTAACTGCAGAAAT 57.329 30.769 23.35 9.85 0.00 2.17
2901 2984 8.671384 ATGTTTAACACTAGTAACTGCAGAAA 57.329 30.769 23.35 4.48 0.00 2.52
2902 2985 9.938280 ATATGTTTAACACTAGTAACTGCAGAA 57.062 29.630 23.35 4.90 0.00 3.02
2903 2986 9.366216 CATATGTTTAACACTAGTAACTGCAGA 57.634 33.333 23.35 0.00 0.00 4.26
2904 2987 9.366216 TCATATGTTTAACACTAGTAACTGCAG 57.634 33.333 13.48 13.48 0.00 4.41
2905 2988 9.884636 ATCATATGTTTAACACTAGTAACTGCA 57.115 29.630 0.00 0.00 0.00 4.41
2916 2999 9.503427 GCAGTTCCTAAATCATATGTTTAACAC 57.497 33.333 0.00 4.82 0.00 3.32
2917 3000 9.461312 AGCAGTTCCTAAATCATATGTTTAACA 57.539 29.630 0.00 0.00 0.00 2.41
2918 3001 9.937175 GAGCAGTTCCTAAATCATATGTTTAAC 57.063 33.333 1.90 2.78 0.00 2.01
2919 3002 8.826710 CGAGCAGTTCCTAAATCATATGTTTAA 58.173 33.333 1.90 0.00 0.00 1.52
2920 3003 8.201464 TCGAGCAGTTCCTAAATCATATGTTTA 58.799 33.333 1.90 6.49 0.00 2.01
2921 3004 7.011482 GTCGAGCAGTTCCTAAATCATATGTTT 59.989 37.037 1.90 5.69 0.00 2.83
2922 3005 6.480320 GTCGAGCAGTTCCTAAATCATATGTT 59.520 38.462 1.90 0.00 0.00 2.71
2923 3006 5.986135 GTCGAGCAGTTCCTAAATCATATGT 59.014 40.000 1.90 0.00 0.00 2.29
2924 3007 5.985530 TGTCGAGCAGTTCCTAAATCATATG 59.014 40.000 0.00 0.00 0.00 1.78
2934 3017 2.584391 GGGGTGTCGAGCAGTTCCT 61.584 63.158 0.00 0.00 0.00 3.36
2989 3073 4.938575 ACATTGTATTGTACCCCTTGGA 57.061 40.909 0.00 0.00 34.81 3.53
3032 3116 7.445402 GGAGGGTGTTAGACTGTATATACGTAA 59.555 40.741 8.33 1.60 0.00 3.18
3125 3209 1.347707 TCACGAAGCCTCTTCCACAAT 59.652 47.619 0.00 0.00 0.00 2.71
3236 3321 7.013750 TGTTTCATGCTAGGACAAAACACATTA 59.986 33.333 16.94 1.21 33.17 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.