Multiple sequence alignment - TraesCS6A01G132200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G132200 chr6A 100.000 3887 0 0 2057 5943 104356345 104360231 0.000000e+00 7179.0
1 TraesCS6A01G132200 chr6A 98.668 3379 22 9 2057 5419 104447243 104443872 0.000000e+00 5969.0
2 TraesCS6A01G132200 chr6A 100.000 1914 0 0 1 1914 104354289 104356202 0.000000e+00 3535.0
3 TraesCS6A01G132200 chr6A 99.698 1658 5 0 257 1914 104448911 104447254 0.000000e+00 3035.0
4 TraesCS6A01G132200 chr6A 96.111 180 7 0 5764 5943 11627110 11626931 1.620000e-75 294.0
5 TraesCS6A01G132200 chr6A 84.740 308 22 9 5404 5691 104443858 104443556 9.750000e-73 285.0
6 TraesCS6A01G132200 chr6A 87.037 54 7 0 5710 5763 590597492 590597439 1.790000e-05 62.1
7 TraesCS6A01G132200 chr6D 95.627 3499 125 13 2062 5552 86658172 86661650 0.000000e+00 5589.0
8 TraesCS6A01G132200 chr6D 89.027 884 38 21 1 853 86656062 86656917 0.000000e+00 1040.0
9 TraesCS6A01G132200 chr6D 95.561 383 12 3 858 1235 86656956 86657338 5.090000e-170 608.0
10 TraesCS6A01G132200 chr6D 85.911 582 61 14 1289 1857 86657447 86658020 8.520000e-168 601.0
11 TraesCS6A01G132200 chr6B 95.497 2909 101 19 2745 5629 164358108 164361010 0.000000e+00 4619.0
12 TraesCS6A01G132200 chr6B 91.605 1215 43 18 13 1182 164356475 164357675 0.000000e+00 1624.0
13 TraesCS6A01G132200 chr6B 96.875 352 11 0 2057 2408 164357745 164358096 1.840000e-164 590.0
14 TraesCS6A01G132200 chr5B 85.784 612 84 3 4359 4969 684120915 684120306 0.000000e+00 645.0
15 TraesCS6A01G132200 chr5B 75.815 736 155 21 4218 4943 560442162 560441440 9.480000e-93 351.0
16 TraesCS6A01G132200 chr5B 86.822 129 13 3 2782 2908 684130820 684130694 2.230000e-29 141.0
17 TraesCS6A01G132200 chr5B 89.091 55 6 0 1127 1181 561064775 561064721 1.070000e-07 69.4
18 TraesCS6A01G132200 chr5B 89.583 48 5 0 1127 1174 560444538 560444491 1.790000e-05 62.1
19 TraesCS6A01G132200 chr4D 75.290 1036 239 17 3915 4943 15913236 15912211 4.170000e-131 479.0
20 TraesCS6A01G132200 chr4D 71.930 684 142 33 2790 3463 15914627 15913984 2.870000e-33 154.0
21 TraesCS6A01G132200 chr4A 75.024 1037 217 19 3912 4943 584679679 584680678 5.470000e-120 442.0
22 TraesCS6A01G132200 chr4A 75.048 1034 216 19 3915 4943 584735245 584734249 5.470000e-120 442.0
23 TraesCS6A01G132200 chr5A 75.549 728 165 12 4222 4944 576085595 576084876 4.410000e-91 346.0
24 TraesCS6A01G132200 chr5A 75.549 728 165 12 4222 4944 576271836 576272555 4.410000e-91 346.0
25 TraesCS6A01G132200 chr5A 95.028 181 9 0 5763 5943 503864612 503864432 9.750000e-73 285.0
26 TraesCS6A01G132200 chr5A 96.970 33 1 0 1218 1250 558137369 558137401 8.320000e-04 56.5
27 TraesCS6A01G132200 chr4B 75.620 726 162 15 4224 4943 27519688 27518972 4.410000e-91 346.0
28 TraesCS6A01G132200 chr4B 73.139 685 134 29 2789 3463 27521791 27521147 3.630000e-47 200.0
29 TraesCS6A01G132200 chr4B 72.904 668 129 31 2789 3445 27249689 27250315 3.660000e-42 183.0
30 TraesCS6A01G132200 chr4B 78.599 257 51 4 3915 4169 27520220 27519966 3.680000e-37 167.0
31 TraesCS6A01G132200 chr4B 87.912 91 9 2 2476 2565 398567124 398567035 8.150000e-19 106.0
32 TraesCS6A01G132200 chr5D 75.370 743 160 21 4211 4943 458095519 458094790 2.650000e-88 337.0
33 TraesCS6A01G132200 chr5D 81.529 157 24 4 2789 2944 537224589 537224437 2.250000e-24 124.0
34 TraesCS6A01G132200 chr5D 89.583 48 5 0 1127 1174 458097945 458097898 1.790000e-05 62.1
35 TraesCS6A01G132200 chr3A 97.802 182 4 0 5762 5943 734257824 734257643 1.240000e-81 315.0
36 TraesCS6A01G132200 chr3A 93.370 181 12 0 5763 5943 6768667 6768487 9.820000e-68 268.0
37 TraesCS6A01G132200 chr3A 92.265 181 13 1 5763 5943 6748523 6748344 7.640000e-64 255.0
38 TraesCS6A01G132200 chr3A 90.000 50 3 2 2476 2524 423857174 423857222 4.970000e-06 63.9
39 TraesCS6A01G132200 chr1A 97.778 180 4 0 5764 5943 6975694 6975515 1.610000e-80 311.0
40 TraesCS6A01G132200 chr1A 88.525 61 6 1 2493 2552 480933520 480933460 8.260000e-09 73.1
41 TraesCS6A01G132200 chr2A 97.222 180 5 0 5764 5943 39293528 39293707 7.480000e-79 305.0
42 TraesCS6A01G132200 chr2A 95.556 180 8 0 5764 5943 4932097 4931918 7.540000e-74 289.0
43 TraesCS6A01G132200 chr2A 77.305 141 24 7 1467 1601 39582156 39582018 6.390000e-10 76.8
44 TraesCS6A01G132200 chr2A 76.101 159 28 9 1450 1601 39945327 39945482 2.300000e-09 75.0
45 TraesCS6A01G132200 chr7B 96.667 180 6 0 5764 5943 1427931 1427752 3.480000e-77 300.0
46 TraesCS6A01G132200 chr7B 94.595 37 1 1 5014 5050 741949633 741949668 8.320000e-04 56.5
47 TraesCS6A01G132200 chr2D 86.207 87 10 2 2475 2560 627330479 627330394 6.340000e-15 93.5
48 TraesCS6A01G132200 chr2D 82.828 99 16 1 2494 2591 537462948 537462850 2.950000e-13 87.9
49 TraesCS6A01G132200 chr2D 79.839 124 20 5 1550 1670 36226218 36226097 1.060000e-12 86.1
50 TraesCS6A01G132200 chr7A 88.060 67 5 3 2484 2548 539439230 539439165 6.390000e-10 76.8
51 TraesCS6A01G132200 chr2B 92.453 53 1 3 1550 1600 789613068 789613119 8.260000e-09 73.1
52 TraesCS6A01G132200 chr2B 77.876 113 25 0 2476 2588 6196658 6196770 2.970000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G132200 chr6A 104354289 104360231 5942 False 5357.000000 7179 100.000000 1 5943 2 chr6A.!!$F1 5942
1 TraesCS6A01G132200 chr6A 104443556 104448911 5355 True 3096.333333 5969 94.368667 257 5691 3 chr6A.!!$R3 5434
2 TraesCS6A01G132200 chr6D 86656062 86661650 5588 False 1959.500000 5589 91.531500 1 5552 4 chr6D.!!$F1 5551
3 TraesCS6A01G132200 chr6B 164356475 164361010 4535 False 2277.666667 4619 94.659000 13 5629 3 chr6B.!!$F1 5616
4 TraesCS6A01G132200 chr5B 684120306 684120915 609 True 645.000000 645 85.784000 4359 4969 1 chr5B.!!$R2 610
5 TraesCS6A01G132200 chr5B 560441440 560444538 3098 True 206.550000 351 82.699000 1127 4943 2 chr5B.!!$R4 3816
6 TraesCS6A01G132200 chr4D 15912211 15914627 2416 True 316.500000 479 73.610000 2790 4943 2 chr4D.!!$R1 2153
7 TraesCS6A01G132200 chr4A 584679679 584680678 999 False 442.000000 442 75.024000 3912 4943 1 chr4A.!!$F1 1031
8 TraesCS6A01G132200 chr4A 584734249 584735245 996 True 442.000000 442 75.048000 3915 4943 1 chr4A.!!$R1 1028
9 TraesCS6A01G132200 chr5A 576084876 576085595 719 True 346.000000 346 75.549000 4222 4944 1 chr5A.!!$R2 722
10 TraesCS6A01G132200 chr5A 576271836 576272555 719 False 346.000000 346 75.549000 4222 4944 1 chr5A.!!$F2 722
11 TraesCS6A01G132200 chr4B 27518972 27521791 2819 True 237.666667 346 75.786000 2789 4943 3 chr4B.!!$R2 2154

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
248 269 1.372087 GCTGGAGCCTTGACATTCCG 61.372 60.0 0.0 0.0 34.31 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
5259 6363 3.319122 GGAAAAAGTGGTTGACATCAGCT 59.681 43.478 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.163488 CCCAAAGCAATCATTTAGATCAGCA 60.163 40.000 0.00 0.00 39.06 4.41
100 101 5.068987 AGGCTTCAAATGAGTTTAGCAACAA 59.931 36.000 7.03 0.00 32.84 2.83
105 106 6.514947 TCAAATGAGTTTAGCAACAAAGCAT 58.485 32.000 0.00 0.00 35.05 3.79
151 153 4.821805 TCTCATCCTTTCCACAGAAAACAC 59.178 41.667 0.00 0.00 41.40 3.32
178 198 6.015434 GCCCCTTTTTAAAAGATTGTCTCTGA 60.015 38.462 17.91 0.00 33.29 3.27
194 214 9.649167 ATTGTCTCTGATCAAAATCATTTTTCC 57.351 29.630 0.00 0.00 41.05 3.13
207 227 1.909700 TTTTTCCGCTGAGAAGCCAT 58.090 45.000 0.00 0.00 0.00 4.40
248 269 1.372087 GCTGGAGCCTTGACATTCCG 61.372 60.000 0.00 0.00 34.31 4.30
290 315 1.400846 GTACAAGTCGAGATCGGAGCA 59.599 52.381 1.91 0.00 40.29 4.26
5196 6296 0.744874 AGCGAGCGTCTATTTGCCTA 59.255 50.000 0.00 0.00 0.00 3.93
5259 6363 8.485976 TCATAACGACACATGTTGATGATTTA 57.514 30.769 6.25 0.00 33.36 1.40
5269 6373 6.600427 ACATGTTGATGATTTAGCTGATGTCA 59.400 34.615 0.00 0.00 33.36 3.58
5284 6388 4.792068 TGATGTCAACCACTTTTTCCTCT 58.208 39.130 0.00 0.00 0.00 3.69
5292 6396 6.887545 TCAACCACTTTTTCCTCTGAAGTTTA 59.112 34.615 0.00 0.00 31.63 2.01
5294 6398 7.511959 ACCACTTTTTCCTCTGAAGTTTATC 57.488 36.000 0.00 0.00 31.63 1.75
5300 6404 8.850454 TTTTTCCTCTGAAGTTTATCGTTTTG 57.150 30.769 0.00 0.00 0.00 2.44
5339 6443 9.650371 GTTTTTAGATGTTTTCATTTTTGCTCC 57.350 29.630 0.00 0.00 41.05 4.70
5423 6557 9.937175 GATGGTAACTTTTGCTCATATTACTTC 57.063 33.333 0.00 0.00 37.61 3.01
5438 6572 2.841442 ACTTCCCTTCTTCGGTTCAG 57.159 50.000 0.00 0.00 0.00 3.02
5469 6603 9.807649 GCTTTGTTCATGGTATTATGATTTTCT 57.192 29.630 0.00 0.00 36.97 2.52
5523 6658 8.317891 TCTTGCTCTATAAATTTTGTTCACGA 57.682 30.769 0.00 0.00 0.00 4.35
5601 6755 6.405216 CAATTTATGCAGCGAGTTTTAATGC 58.595 36.000 0.00 0.00 37.40 3.56
5614 6768 2.353357 TTAATGCAGCTCCTCCCATG 57.647 50.000 0.00 0.00 0.00 3.66
5631 6785 5.741011 TCCCATGTAGGAACAAAGATGTAC 58.259 41.667 0.00 0.00 39.58 2.90
5641 6795 6.069673 AGGAACAAAGATGTACATATGTGGGA 60.070 38.462 21.66 2.32 39.40 4.37
5642 6796 6.601613 GGAACAAAGATGTACATATGTGGGAA 59.398 38.462 21.66 1.62 39.40 3.97
5644 6798 5.885912 ACAAAGATGTACATATGTGGGAACC 59.114 40.000 21.66 1.34 44.77 3.62
5691 6845 1.136285 GACGTAAACCTAGCCGTCGC 61.136 60.000 0.00 0.00 40.04 5.19
5692 6846 1.875364 CGTAAACCTAGCCGTCGCC 60.875 63.158 0.00 0.00 34.57 5.54
5693 6847 1.216178 GTAAACCTAGCCGTCGCCA 59.784 57.895 0.00 0.00 34.57 5.69
5694 6848 1.080435 GTAAACCTAGCCGTCGCCAC 61.080 60.000 0.00 0.00 34.57 5.01
5695 6849 2.229690 TAAACCTAGCCGTCGCCACC 62.230 60.000 0.00 0.00 34.57 4.61
5715 6869 2.849646 GGATCCCCCTCCCTTCGG 60.850 72.222 0.00 0.00 0.00 4.30
5716 6870 2.849646 GATCCCCCTCCCTTCGGG 60.850 72.222 0.00 0.00 46.11 5.14
5729 6883 3.062122 CCTTCGGGGCTAAGTAAAACA 57.938 47.619 0.00 0.00 0.00 2.83
5730 6884 3.007635 CCTTCGGGGCTAAGTAAAACAG 58.992 50.000 0.00 0.00 0.00 3.16
5731 6885 3.307199 CCTTCGGGGCTAAGTAAAACAGA 60.307 47.826 0.00 0.00 0.00 3.41
5732 6886 4.514401 CTTCGGGGCTAAGTAAAACAGAT 58.486 43.478 0.00 0.00 0.00 2.90
5733 6887 5.395990 CCTTCGGGGCTAAGTAAAACAGATA 60.396 44.000 0.00 0.00 0.00 1.98
5734 6888 5.272283 TCGGGGCTAAGTAAAACAGATAG 57.728 43.478 0.00 0.00 0.00 2.08
5735 6889 4.713321 TCGGGGCTAAGTAAAACAGATAGT 59.287 41.667 0.00 0.00 0.00 2.12
5736 6890 5.188359 TCGGGGCTAAGTAAAACAGATAGTT 59.812 40.000 0.00 0.00 43.89 2.24
5737 6891 5.522824 CGGGGCTAAGTAAAACAGATAGTTC 59.477 44.000 0.00 0.00 40.26 3.01
5738 6892 5.522824 GGGGCTAAGTAAAACAGATAGTTCG 59.477 44.000 0.00 0.00 40.26 3.95
5739 6893 6.104665 GGGCTAAGTAAAACAGATAGTTCGT 58.895 40.000 0.00 0.00 40.26 3.85
5740 6894 7.260603 GGGCTAAGTAAAACAGATAGTTCGTA 58.739 38.462 0.00 0.00 40.26 3.43
5741 6895 7.221645 GGGCTAAGTAAAACAGATAGTTCGTAC 59.778 40.741 0.00 0.00 40.26 3.67
5742 6896 7.972832 GGCTAAGTAAAACAGATAGTTCGTACT 59.027 37.037 0.00 0.00 40.26 2.73
5743 6897 9.351570 GCTAAGTAAAACAGATAGTTCGTACTT 57.648 33.333 0.00 15.34 44.59 2.24
5746 6900 8.530269 AGTAAAACAGATAGTTCGTACTTTGG 57.470 34.615 0.00 0.00 40.26 3.28
5747 6901 8.362639 AGTAAAACAGATAGTTCGTACTTTGGA 58.637 33.333 0.00 0.00 40.26 3.53
5748 6902 9.148104 GTAAAACAGATAGTTCGTACTTTGGAT 57.852 33.333 0.00 0.00 40.26 3.41
5750 6904 8.699283 AAACAGATAGTTCGTACTTTGGATAC 57.301 34.615 0.00 0.00 40.26 2.24
5751 6905 6.493116 ACAGATAGTTCGTACTTTGGATACG 58.507 40.000 0.00 0.00 45.35 3.06
5752 6906 5.913514 CAGATAGTTCGTACTTTGGATACGG 59.086 44.000 0.00 0.00 44.36 4.02
5753 6907 2.884827 AGTTCGTACTTTGGATACGGC 58.115 47.619 4.87 0.00 44.36 5.68
5754 6908 2.494870 AGTTCGTACTTTGGATACGGCT 59.505 45.455 4.87 1.89 44.36 5.52
5755 6909 2.856557 GTTCGTACTTTGGATACGGCTC 59.143 50.000 4.87 0.00 44.36 4.70
5756 6910 1.064505 TCGTACTTTGGATACGGCTCG 59.935 52.381 4.87 0.00 44.36 5.03
5757 6911 1.849097 GTACTTTGGATACGGCTCGG 58.151 55.000 0.00 0.00 42.51 4.63
5758 6912 0.103572 TACTTTGGATACGGCTCGGC 59.896 55.000 0.00 0.00 42.51 5.54
5759 6913 2.202824 TTTGGATACGGCTCGGCG 60.203 61.111 11.46 11.46 42.51 6.46
5760 6914 2.901051 CTTTGGATACGGCTCGGCGT 62.901 60.000 21.71 21.71 42.51 5.68
5761 6915 1.665264 TTTGGATACGGCTCGGCGTA 61.665 55.000 24.36 24.36 42.51 4.42
5762 6916 1.457823 TTGGATACGGCTCGGCGTAT 61.458 55.000 30.14 30.14 42.51 3.06
5763 6917 1.154073 GGATACGGCTCGGCGTATC 60.154 63.158 36.98 36.98 40.52 2.24
5764 6918 1.577922 GATACGGCTCGGCGTATCA 59.422 57.895 38.28 20.31 40.71 2.15
5765 6919 0.728466 GATACGGCTCGGCGTATCAC 60.728 60.000 38.28 24.74 40.71 3.06
5766 6920 1.170919 ATACGGCTCGGCGTATCACT 61.171 55.000 26.23 10.90 0.00 3.41
5767 6921 0.532640 TACGGCTCGGCGTATCACTA 60.533 55.000 19.66 1.01 0.00 2.74
5768 6922 1.370172 CGGCTCGGCGTATCACTAC 60.370 63.158 6.85 0.00 0.00 2.73
5769 6923 1.007618 GGCTCGGCGTATCACTACC 60.008 63.158 6.85 0.00 0.00 3.18
5770 6924 1.731433 GGCTCGGCGTATCACTACCA 61.731 60.000 6.85 0.00 0.00 3.25
5771 6925 0.317938 GCTCGGCGTATCACTACCAG 60.318 60.000 6.85 0.00 0.00 4.00
5772 6926 1.306148 CTCGGCGTATCACTACCAGA 58.694 55.000 6.85 0.00 0.00 3.86
5773 6927 1.674441 CTCGGCGTATCACTACCAGAA 59.326 52.381 6.85 0.00 0.00 3.02
5774 6928 2.293677 CTCGGCGTATCACTACCAGAAT 59.706 50.000 6.85 0.00 0.00 2.40
5775 6929 2.691526 TCGGCGTATCACTACCAGAATT 59.308 45.455 6.85 0.00 0.00 2.17
5776 6930 3.131577 TCGGCGTATCACTACCAGAATTT 59.868 43.478 6.85 0.00 0.00 1.82
5777 6931 4.338964 TCGGCGTATCACTACCAGAATTTA 59.661 41.667 6.85 0.00 0.00 1.40
5778 6932 4.443394 CGGCGTATCACTACCAGAATTTAC 59.557 45.833 0.00 0.00 0.00 2.01
5779 6933 4.748600 GGCGTATCACTACCAGAATTTACC 59.251 45.833 0.00 0.00 0.00 2.85
5780 6934 4.748600 GCGTATCACTACCAGAATTTACCC 59.251 45.833 0.00 0.00 0.00 3.69
5781 6935 5.682990 GCGTATCACTACCAGAATTTACCCA 60.683 44.000 0.00 0.00 0.00 4.51
5782 6936 6.342906 CGTATCACTACCAGAATTTACCCAA 58.657 40.000 0.00 0.00 0.00 4.12
5783 6937 6.990349 CGTATCACTACCAGAATTTACCCAAT 59.010 38.462 0.00 0.00 0.00 3.16
5784 6938 7.497909 CGTATCACTACCAGAATTTACCCAATT 59.502 37.037 0.00 0.00 37.84 2.32
5785 6939 7.645058 ATCACTACCAGAATTTACCCAATTG 57.355 36.000 0.00 0.00 35.02 2.32
5786 6940 6.548321 TCACTACCAGAATTTACCCAATTGT 58.452 36.000 4.43 0.00 35.02 2.71
5787 6941 6.657541 TCACTACCAGAATTTACCCAATTGTC 59.342 38.462 4.43 0.00 35.02 3.18
5788 6942 5.646360 ACTACCAGAATTTACCCAATTGTCG 59.354 40.000 4.43 0.00 35.02 4.35
5789 6943 4.658063 ACCAGAATTTACCCAATTGTCGA 58.342 39.130 4.43 0.00 35.02 4.20
5790 6944 4.457949 ACCAGAATTTACCCAATTGTCGAC 59.542 41.667 9.11 9.11 35.02 4.20
5791 6945 4.436852 CCAGAATTTACCCAATTGTCGACG 60.437 45.833 11.62 0.00 35.02 5.12
5792 6946 3.687698 AGAATTTACCCAATTGTCGACGG 59.312 43.478 11.62 7.99 35.02 4.79
5793 6947 1.158434 TTTACCCAATTGTCGACGGC 58.842 50.000 11.62 0.00 0.00 5.68
5794 6948 0.674269 TTACCCAATTGTCGACGGCC 60.674 55.000 11.62 0.00 0.00 6.13
5795 6949 1.828461 TACCCAATTGTCGACGGCCA 61.828 55.000 11.62 0.00 0.00 5.36
5796 6950 1.969064 CCCAATTGTCGACGGCCAA 60.969 57.895 11.62 0.00 0.00 4.52
5797 6951 1.519751 CCCAATTGTCGACGGCCAAA 61.520 55.000 11.62 0.00 0.00 3.28
5798 6952 0.525761 CCAATTGTCGACGGCCAAAT 59.474 50.000 11.62 1.46 0.00 2.32
5799 6953 1.467374 CCAATTGTCGACGGCCAAATC 60.467 52.381 11.62 0.00 0.00 2.17
5800 6954 1.468520 CAATTGTCGACGGCCAAATCT 59.531 47.619 11.62 0.00 0.00 2.40
5801 6955 2.675844 CAATTGTCGACGGCCAAATCTA 59.324 45.455 11.62 0.00 0.00 1.98
5802 6956 2.684001 TTGTCGACGGCCAAATCTAT 57.316 45.000 11.62 0.00 0.00 1.98
5803 6957 1.934589 TGTCGACGGCCAAATCTATG 58.065 50.000 11.62 0.00 0.00 2.23
5804 6958 0.582005 GTCGACGGCCAAATCTATGC 59.418 55.000 2.24 0.00 0.00 3.14
5805 6959 0.531974 TCGACGGCCAAATCTATGCC 60.532 55.000 2.24 0.00 41.85 4.40
5809 6963 1.941812 GGCCAAATCTATGCCGACG 59.058 57.895 0.00 0.00 35.08 5.12
5810 6964 1.507141 GGCCAAATCTATGCCGACGG 61.507 60.000 10.29 10.29 35.08 4.79
5832 6986 3.309675 CGTTGGCATCGACGGATC 58.690 61.111 12.41 0.00 44.68 3.36
5833 6987 1.226974 CGTTGGCATCGACGGATCT 60.227 57.895 12.41 0.00 44.68 2.75
5834 6988 0.030235 CGTTGGCATCGACGGATCTA 59.970 55.000 12.41 0.00 44.68 1.98
5835 6989 1.335964 CGTTGGCATCGACGGATCTAT 60.336 52.381 12.41 0.00 44.68 1.98
5836 6990 2.329379 GTTGGCATCGACGGATCTATC 58.671 52.381 0.00 0.00 0.00 2.08
5837 6991 0.888619 TGGCATCGACGGATCTATCC 59.111 55.000 0.00 0.00 43.65 2.59
5838 6992 0.173708 GGCATCGACGGATCTATCCC 59.826 60.000 3.39 0.00 44.24 3.85
5845 6999 2.971452 GGATCTATCCCGACGGCC 59.029 66.667 8.86 0.00 41.20 6.13
5846 7000 2.647158 GGATCTATCCCGACGGCCC 61.647 68.421 8.86 0.00 41.20 5.80
5847 7001 1.906824 GATCTATCCCGACGGCCCA 60.907 63.158 8.86 0.00 0.00 5.36
5848 7002 1.878656 GATCTATCCCGACGGCCCAG 61.879 65.000 8.86 4.44 0.00 4.45
5849 7003 3.616721 CTATCCCGACGGCCCAGG 61.617 72.222 8.86 0.00 0.00 4.45
5871 7025 2.884207 GCCGTCGGCGTAGGAAAG 60.884 66.667 22.50 0.00 39.62 2.62
5872 7026 2.884207 CCGTCGGCGTAGGAAAGC 60.884 66.667 9.28 0.00 36.15 3.51
5877 7031 2.884207 GGCGTAGGAAAGCCGTCG 60.884 66.667 0.00 0.00 44.22 5.12
5878 7032 2.884207 GCGTAGGAAAGCCGTCGG 60.884 66.667 6.99 6.99 39.96 4.79
5889 7043 4.027755 CCGTCGGCATACATCCAC 57.972 61.111 0.00 0.00 0.00 4.02
5890 7044 1.594293 CCGTCGGCATACATCCACC 60.594 63.158 0.00 0.00 0.00 4.61
5891 7045 1.441729 CGTCGGCATACATCCACCT 59.558 57.895 0.00 0.00 0.00 4.00
5892 7046 0.671796 CGTCGGCATACATCCACCTA 59.328 55.000 0.00 0.00 0.00 3.08
5893 7047 1.272490 CGTCGGCATACATCCACCTAT 59.728 52.381 0.00 0.00 0.00 2.57
5894 7048 2.688507 GTCGGCATACATCCACCTATG 58.311 52.381 0.00 0.00 0.00 2.23
5895 7049 1.001974 TCGGCATACATCCACCTATGC 59.998 52.381 1.72 1.72 43.07 3.14
5897 7051 1.442769 GCATACATCCACCTATGCCG 58.557 55.000 0.00 0.00 39.51 5.69
5898 7052 1.001974 GCATACATCCACCTATGCCGA 59.998 52.381 0.00 0.00 39.51 5.54
5899 7053 2.688507 CATACATCCACCTATGCCGAC 58.311 52.381 0.00 0.00 0.00 4.79
5900 7054 0.671796 TACATCCACCTATGCCGACG 59.328 55.000 0.00 0.00 0.00 5.12
5901 7055 1.300931 CATCCACCTATGCCGACGG 60.301 63.158 10.29 10.29 0.00 4.79
5902 7056 2.507854 ATCCACCTATGCCGACGGG 61.508 63.158 17.22 0.14 0.00 5.28
5903 7057 4.235762 CCACCTATGCCGACGGGG 62.236 72.222 17.22 10.75 39.58 5.73
5904 7058 4.235762 CACCTATGCCGACGGGGG 62.236 72.222 17.22 0.00 35.78 5.40
5928 7082 4.373116 GCACAGAAGGGCCGTCGA 62.373 66.667 13.88 0.00 0.00 4.20
5929 7083 2.432628 CACAGAAGGGCCGTCGAC 60.433 66.667 13.88 5.18 0.00 4.20
5930 7084 2.915659 ACAGAAGGGCCGTCGACA 60.916 61.111 17.16 0.00 0.00 4.35
5931 7085 2.283529 ACAGAAGGGCCGTCGACAT 61.284 57.895 17.16 0.00 0.00 3.06
5932 7086 1.519455 CAGAAGGGCCGTCGACATC 60.519 63.158 17.16 5.92 0.00 3.06
5933 7087 2.202892 GAAGGGCCGTCGACATCC 60.203 66.667 17.16 14.85 0.00 3.51
5934 7088 3.735037 GAAGGGCCGTCGACATCCC 62.735 68.421 26.38 26.38 39.05 3.85
5936 7090 4.090588 GGGCCGTCGACATCCCAA 62.091 66.667 27.86 0.00 38.62 4.12
5937 7091 2.189521 GGCCGTCGACATCCCAAT 59.810 61.111 17.16 0.00 0.00 3.16
5938 7092 1.444250 GGCCGTCGACATCCCAATA 59.556 57.895 17.16 0.00 0.00 1.90
5939 7093 0.179067 GGCCGTCGACATCCCAATAA 60.179 55.000 17.16 0.00 0.00 1.40
5940 7094 1.658994 GCCGTCGACATCCCAATAAA 58.341 50.000 17.16 0.00 0.00 1.40
5941 7095 2.218603 GCCGTCGACATCCCAATAAAT 58.781 47.619 17.16 0.00 0.00 1.40
5942 7096 3.395639 GCCGTCGACATCCCAATAAATA 58.604 45.455 17.16 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.977725 CCTGCTGATCTAAATGATTGCTTTG 59.022 40.000 0.00 0.00 36.56 2.77
42 43 4.616835 GCTTTTGATTTGCGATCAGTTCCT 60.617 41.667 3.25 0.00 0.00 3.36
100 101 9.151471 CATTGATCATCTTTTCTTTTCATGCTT 57.849 29.630 0.00 0.00 0.00 3.91
105 106 8.413309 AGACCATTGATCATCTTTTCTTTTCA 57.587 30.769 0.00 0.00 0.00 2.69
151 153 6.015095 AGAGACAATCTTTTAAAAAGGGGCTG 60.015 38.462 1.66 0.00 32.99 4.85
178 198 6.271488 TCTCAGCGGAAAAATGATTTTGAT 57.729 33.333 3.62 0.00 38.83 2.57
217 238 7.039082 TGTCAAGGCTCCAGCTAAAATTAATTT 60.039 33.333 7.64 7.64 41.70 1.82
218 239 6.437162 TGTCAAGGCTCCAGCTAAAATTAATT 59.563 34.615 0.00 0.00 41.70 1.40
219 240 5.951747 TGTCAAGGCTCCAGCTAAAATTAAT 59.048 36.000 0.00 0.00 41.70 1.40
248 269 5.963594 ACTATTGACTTCGGAAGTTCCTAC 58.036 41.667 23.17 11.41 43.03 3.18
290 315 2.540516 CGTCTCGTCTCTCGTGATACAT 59.459 50.000 4.26 0.00 42.49 2.29
5259 6363 3.319122 GGAAAAAGTGGTTGACATCAGCT 59.681 43.478 0.00 0.00 0.00 4.24
5269 6373 7.255139 CGATAAACTTCAGAGGAAAAAGTGGTT 60.255 37.037 0.00 0.00 33.68 3.67
5284 6388 7.926555 AGAGAAGAGACAAAACGATAAACTTCA 59.073 33.333 0.00 0.00 35.28 3.02
5292 6396 5.461032 ACAGAGAGAAGAGACAAAACGAT 57.539 39.130 0.00 0.00 0.00 3.73
5294 6398 5.975410 AAACAGAGAGAAGAGACAAAACG 57.025 39.130 0.00 0.00 0.00 3.60
5300 6404 8.825667 AACATCTAAAAACAGAGAGAAGAGAC 57.174 34.615 0.00 0.00 0.00 3.36
5336 6440 6.747280 CGAACAAATATTTTGCCTTGTAGGAG 59.253 38.462 0.00 0.00 37.67 3.69
5339 6443 6.307800 CCACGAACAAATATTTTGCCTTGTAG 59.692 38.462 0.00 0.00 31.90 2.74
5352 6456 5.906113 ATTATGGTTGCCACGAACAAATA 57.094 34.783 0.00 0.00 35.80 1.40
5354 6458 4.592485 AATTATGGTTGCCACGAACAAA 57.408 36.364 0.00 0.00 35.80 2.83
5423 6557 0.955919 GGTGCTGAACCGAAGAAGGG 60.956 60.000 0.00 0.00 39.81 3.95
5438 6572 0.878416 TACCATGAACAAAGCGGTGC 59.122 50.000 0.00 0.00 0.00 5.01
5469 6603 3.954200 AGCATGGACACAATATCACACA 58.046 40.909 0.00 0.00 0.00 3.72
5480 6614 4.787598 CAAGAAACAACTAGCATGGACAC 58.212 43.478 0.00 0.00 0.00 3.67
5552 6687 6.724694 GCATGTGCCAAGATTGATTTAAAA 57.275 33.333 0.00 0.00 34.31 1.52
5601 6755 1.139853 GTTCCTACATGGGAGGAGCTG 59.860 57.143 19.36 0.00 43.99 4.24
5614 6768 7.226720 CCCACATATGTACATCTTTGTTCCTAC 59.773 40.741 12.68 0.00 37.28 3.18
5631 6785 2.039084 GGAGCTAGGGTTCCCACATATG 59.961 54.545 10.73 0.00 36.94 1.78
5665 6819 1.733718 GCTAGGTTTACGTCCCGTGAC 60.734 57.143 0.00 0.00 41.39 3.67
5710 6864 3.934068 TCTGTTTTACTTAGCCCCGAAG 58.066 45.455 0.00 0.00 0.00 3.79
5711 6865 4.563140 ATCTGTTTTACTTAGCCCCGAA 57.437 40.909 0.00 0.00 0.00 4.30
5712 6866 4.713321 ACTATCTGTTTTACTTAGCCCCGA 59.287 41.667 0.00 0.00 0.00 5.14
5713 6867 5.019785 ACTATCTGTTTTACTTAGCCCCG 57.980 43.478 0.00 0.00 0.00 5.73
5714 6868 5.522824 CGAACTATCTGTTTTACTTAGCCCC 59.477 44.000 0.00 0.00 39.30 5.80
5715 6869 6.104665 ACGAACTATCTGTTTTACTTAGCCC 58.895 40.000 0.00 0.00 39.30 5.19
5716 6870 7.972832 AGTACGAACTATCTGTTTTACTTAGCC 59.027 37.037 0.00 0.00 39.30 3.93
5717 6871 8.908172 AGTACGAACTATCTGTTTTACTTAGC 57.092 34.615 0.00 0.00 39.30 3.09
5720 6874 8.985805 CCAAAGTACGAACTATCTGTTTTACTT 58.014 33.333 0.00 0.00 42.80 2.24
5721 6875 8.362639 TCCAAAGTACGAACTATCTGTTTTACT 58.637 33.333 0.00 0.00 39.30 2.24
5722 6876 8.524870 TCCAAAGTACGAACTATCTGTTTTAC 57.475 34.615 0.00 0.00 39.30 2.01
5724 6878 9.148104 GTATCCAAAGTACGAACTATCTGTTTT 57.852 33.333 0.00 0.00 39.30 2.43
5725 6879 7.487189 CGTATCCAAAGTACGAACTATCTGTTT 59.513 37.037 0.00 0.00 45.69 2.83
5726 6880 6.971184 CGTATCCAAAGTACGAACTATCTGTT 59.029 38.462 0.00 0.00 45.69 3.16
5727 6881 6.459298 CCGTATCCAAAGTACGAACTATCTGT 60.459 42.308 7.20 0.00 45.69 3.41
5728 6882 5.913514 CCGTATCCAAAGTACGAACTATCTG 59.086 44.000 7.20 0.00 45.69 2.90
5729 6883 5.506982 GCCGTATCCAAAGTACGAACTATCT 60.507 44.000 7.20 0.00 45.69 1.98
5730 6884 4.678742 GCCGTATCCAAAGTACGAACTATC 59.321 45.833 7.20 0.00 45.69 2.08
5731 6885 4.340381 AGCCGTATCCAAAGTACGAACTAT 59.660 41.667 7.20 0.00 45.69 2.12
5732 6886 3.696051 AGCCGTATCCAAAGTACGAACTA 59.304 43.478 7.20 0.00 45.69 2.24
5733 6887 2.494870 AGCCGTATCCAAAGTACGAACT 59.505 45.455 7.20 2.28 45.69 3.01
5734 6888 2.856557 GAGCCGTATCCAAAGTACGAAC 59.143 50.000 7.20 0.21 45.69 3.95
5735 6889 2.478370 CGAGCCGTATCCAAAGTACGAA 60.478 50.000 7.20 0.00 45.69 3.85
5736 6890 1.064505 CGAGCCGTATCCAAAGTACGA 59.935 52.381 7.20 0.00 45.69 3.43
5737 6891 1.474017 CGAGCCGTATCCAAAGTACG 58.526 55.000 0.00 0.00 43.26 3.67
5738 6892 1.849097 CCGAGCCGTATCCAAAGTAC 58.151 55.000 0.00 0.00 0.00 2.73
5739 6893 0.103572 GCCGAGCCGTATCCAAAGTA 59.896 55.000 0.00 0.00 0.00 2.24
5740 6894 1.153429 GCCGAGCCGTATCCAAAGT 60.153 57.895 0.00 0.00 0.00 2.66
5741 6895 2.237751 CGCCGAGCCGTATCCAAAG 61.238 63.158 0.00 0.00 0.00 2.77
5742 6896 1.665264 TACGCCGAGCCGTATCCAAA 61.665 55.000 0.00 0.00 42.20 3.28
5743 6897 2.120282 TACGCCGAGCCGTATCCAA 61.120 57.895 0.00 0.00 42.20 3.53
5744 6898 2.516695 TACGCCGAGCCGTATCCA 60.517 61.111 0.00 0.00 42.20 3.41
5748 6902 0.532640 TAGTGATACGCCGAGCCGTA 60.533 55.000 0.00 5.65 46.28 4.02
5749 6903 1.820906 TAGTGATACGCCGAGCCGT 60.821 57.895 0.00 1.77 44.62 5.68
5750 6904 1.370172 GTAGTGATACGCCGAGCCG 60.370 63.158 0.00 0.00 0.00 5.52
5751 6905 1.007618 GGTAGTGATACGCCGAGCC 60.008 63.158 0.00 0.00 0.00 4.70
5752 6906 0.317938 CTGGTAGTGATACGCCGAGC 60.318 60.000 0.00 0.00 0.00 5.03
5753 6907 1.306148 TCTGGTAGTGATACGCCGAG 58.694 55.000 0.00 0.00 0.00 4.63
5754 6908 1.753930 TTCTGGTAGTGATACGCCGA 58.246 50.000 0.00 0.00 0.00 5.54
5755 6909 2.795175 ATTCTGGTAGTGATACGCCG 57.205 50.000 0.00 0.00 0.00 6.46
5756 6910 4.748600 GGTAAATTCTGGTAGTGATACGCC 59.251 45.833 0.00 0.00 0.00 5.68
5757 6911 4.748600 GGGTAAATTCTGGTAGTGATACGC 59.251 45.833 0.00 0.00 0.00 4.42
5758 6912 5.909477 TGGGTAAATTCTGGTAGTGATACG 58.091 41.667 0.00 0.00 0.00 3.06
5759 6913 8.621286 CAATTGGGTAAATTCTGGTAGTGATAC 58.379 37.037 0.00 0.00 36.28 2.24
5760 6914 8.333235 ACAATTGGGTAAATTCTGGTAGTGATA 58.667 33.333 10.83 0.00 36.28 2.15
5761 6915 7.182060 ACAATTGGGTAAATTCTGGTAGTGAT 58.818 34.615 10.83 0.00 36.28 3.06
5762 6916 6.548321 ACAATTGGGTAAATTCTGGTAGTGA 58.452 36.000 10.83 0.00 36.28 3.41
5763 6917 6.403200 CGACAATTGGGTAAATTCTGGTAGTG 60.403 42.308 10.83 0.00 36.28 2.74
5764 6918 5.646360 CGACAATTGGGTAAATTCTGGTAGT 59.354 40.000 10.83 0.00 36.28 2.73
5765 6919 5.878116 TCGACAATTGGGTAAATTCTGGTAG 59.122 40.000 10.83 0.00 36.28 3.18
5766 6920 5.644636 GTCGACAATTGGGTAAATTCTGGTA 59.355 40.000 11.55 0.00 36.28 3.25
5767 6921 4.457949 GTCGACAATTGGGTAAATTCTGGT 59.542 41.667 11.55 0.00 36.28 4.00
5768 6922 4.436852 CGTCGACAATTGGGTAAATTCTGG 60.437 45.833 17.16 0.00 36.28 3.86
5769 6923 4.436852 CCGTCGACAATTGGGTAAATTCTG 60.437 45.833 17.16 0.00 36.28 3.02
5770 6924 3.687698 CCGTCGACAATTGGGTAAATTCT 59.312 43.478 17.16 0.00 36.28 2.40
5771 6925 3.729762 GCCGTCGACAATTGGGTAAATTC 60.730 47.826 17.16 0.00 36.28 2.17
5772 6926 2.162809 GCCGTCGACAATTGGGTAAATT 59.837 45.455 17.16 0.00 39.13 1.82
5773 6927 1.741145 GCCGTCGACAATTGGGTAAAT 59.259 47.619 17.16 0.00 0.00 1.40
5774 6928 1.158434 GCCGTCGACAATTGGGTAAA 58.842 50.000 17.16 0.00 0.00 2.01
5775 6929 0.674269 GGCCGTCGACAATTGGGTAA 60.674 55.000 17.16 0.00 0.00 2.85
5776 6930 1.078988 GGCCGTCGACAATTGGGTA 60.079 57.895 17.16 0.00 0.00 3.69
5777 6931 2.359478 GGCCGTCGACAATTGGGT 60.359 61.111 17.16 0.00 0.00 4.51
5778 6932 1.519751 TTTGGCCGTCGACAATTGGG 61.520 55.000 17.16 9.22 0.00 4.12
5779 6933 0.525761 ATTTGGCCGTCGACAATTGG 59.474 50.000 17.16 9.61 0.00 3.16
5780 6934 1.468520 AGATTTGGCCGTCGACAATTG 59.531 47.619 17.16 3.24 0.00 2.32
5781 6935 1.821216 AGATTTGGCCGTCGACAATT 58.179 45.000 17.16 0.00 0.00 2.32
5782 6936 2.684001 TAGATTTGGCCGTCGACAAT 57.316 45.000 17.16 7.07 0.00 2.71
5783 6937 2.276201 CATAGATTTGGCCGTCGACAA 58.724 47.619 17.16 1.67 0.00 3.18
5784 6938 1.934589 CATAGATTTGGCCGTCGACA 58.065 50.000 17.16 0.00 0.00 4.35
5785 6939 0.582005 GCATAGATTTGGCCGTCGAC 59.418 55.000 5.18 5.18 0.00 4.20
5786 6940 0.531974 GGCATAGATTTGGCCGTCGA 60.532 55.000 0.00 0.00 38.04 4.20
5787 6941 1.941812 GGCATAGATTTGGCCGTCG 59.058 57.895 0.00 0.00 38.04 5.12
5791 6945 1.507141 CCGTCGGCATAGATTTGGCC 61.507 60.000 0.00 0.00 44.27 5.36
5792 6946 1.941812 CCGTCGGCATAGATTTGGC 59.058 57.895 0.00 0.00 38.71 4.52
5815 6969 0.030235 TAGATCCGTCGATGCCAACG 59.970 55.000 0.00 0.00 38.58 4.10
5816 6970 2.329379 GATAGATCCGTCGATGCCAAC 58.671 52.381 0.00 0.00 0.00 3.77
5817 6971 1.272490 GGATAGATCCGTCGATGCCAA 59.728 52.381 0.00 0.00 37.19 4.52
5818 6972 0.888619 GGATAGATCCGTCGATGCCA 59.111 55.000 0.00 0.00 37.19 4.92
5819 6973 3.723554 GGATAGATCCGTCGATGCC 57.276 57.895 0.00 0.00 37.19 4.40
5828 6982 2.647158 GGGCCGTCGGGATAGATCC 61.647 68.421 14.38 3.20 46.41 3.36
5829 6983 1.878656 CTGGGCCGTCGGGATAGATC 61.879 65.000 14.38 0.00 34.06 2.75
5830 6984 1.908793 CTGGGCCGTCGGGATAGAT 60.909 63.158 14.38 0.00 34.06 1.98
5831 6985 2.520982 CTGGGCCGTCGGGATAGA 60.521 66.667 14.38 0.00 34.06 1.98
5832 6986 3.616721 CCTGGGCCGTCGGGATAG 61.617 72.222 14.38 0.00 35.18 2.08
5854 7008 2.884207 CTTTCCTACGCCGACGGC 60.884 66.667 29.10 29.10 46.75 5.68
5855 7009 2.884207 GCTTTCCTACGCCGACGG 60.884 66.667 10.29 10.29 46.04 4.79
5860 7014 2.884207 CGACGGCTTTCCTACGCC 60.884 66.667 0.00 0.00 42.86 5.68
5861 7015 2.884207 CCGACGGCTTTCCTACGC 60.884 66.667 0.00 0.00 0.00 4.42
5862 7016 2.884207 GCCGACGGCTTTCCTACG 60.884 66.667 31.30 0.00 46.69 3.51
5872 7026 1.594293 GGTGGATGTATGCCGACGG 60.594 63.158 10.29 10.29 0.00 4.79
5873 7027 0.671796 TAGGTGGATGTATGCCGACG 59.328 55.000 0.00 0.00 0.00 5.12
5874 7028 2.688507 CATAGGTGGATGTATGCCGAC 58.311 52.381 0.00 0.00 0.00 4.79
5875 7029 1.001974 GCATAGGTGGATGTATGCCGA 59.998 52.381 3.42 0.00 43.86 5.54
5876 7030 1.442769 GCATAGGTGGATGTATGCCG 58.557 55.000 3.42 0.00 43.86 5.69
5879 7033 2.688507 GTCGGCATAGGTGGATGTATG 58.311 52.381 0.00 0.00 0.00 2.39
5880 7034 1.272490 CGTCGGCATAGGTGGATGTAT 59.728 52.381 0.00 0.00 0.00 2.29
5881 7035 0.671796 CGTCGGCATAGGTGGATGTA 59.328 55.000 0.00 0.00 0.00 2.29
5882 7036 1.441729 CGTCGGCATAGGTGGATGT 59.558 57.895 0.00 0.00 0.00 3.06
5883 7037 1.300931 CCGTCGGCATAGGTGGATG 60.301 63.158 0.00 0.00 0.00 3.51
5884 7038 2.507854 CCCGTCGGCATAGGTGGAT 61.508 63.158 5.50 0.00 0.00 3.41
5885 7039 3.151710 CCCGTCGGCATAGGTGGA 61.152 66.667 5.50 0.00 0.00 4.02
5886 7040 4.235762 CCCCGTCGGCATAGGTGG 62.236 72.222 5.50 0.00 0.00 4.61
5887 7041 4.235762 CCCCCGTCGGCATAGGTG 62.236 72.222 5.50 0.00 0.00 4.00
5911 7065 4.373116 TCGACGGCCCTTCTGTGC 62.373 66.667 0.00 0.00 33.57 4.57
5912 7066 2.432628 GTCGACGGCCCTTCTGTG 60.433 66.667 0.00 0.00 33.57 3.66
5913 7067 2.227089 GATGTCGACGGCCCTTCTGT 62.227 60.000 11.62 0.00 36.89 3.41
5914 7068 1.519455 GATGTCGACGGCCCTTCTG 60.519 63.158 11.62 0.00 0.00 3.02
5915 7069 2.722201 GGATGTCGACGGCCCTTCT 61.722 63.158 11.62 0.00 0.00 2.85
5916 7070 2.202892 GGATGTCGACGGCCCTTC 60.203 66.667 11.62 0.00 0.00 3.46
5917 7071 3.782443 GGGATGTCGACGGCCCTT 61.782 66.667 28.69 4.81 37.59 3.95
5919 7073 2.035237 TATTGGGATGTCGACGGCCC 62.035 60.000 29.07 29.07 41.08 5.80
5920 7074 0.179067 TTATTGGGATGTCGACGGCC 60.179 55.000 15.87 15.87 0.00 6.13
5921 7075 1.658994 TTTATTGGGATGTCGACGGC 58.341 50.000 11.62 4.95 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.