Multiple sequence alignment - TraesCS6A01G132000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G132000 chr6A 100.000 5757 0 0 1 5757 104120406 104114650 0.000000e+00 10632.0
1 TraesCS6A01G132000 chr6D 94.282 2046 85 18 3733 5757 86605161 86603127 0.000000e+00 3101.0
2 TraesCS6A01G132000 chr6D 92.360 2042 98 24 1 2029 86609350 86607354 0.000000e+00 2854.0
3 TraesCS6A01G132000 chr6D 90.214 746 54 8 2916 3646 86606227 86605486 0.000000e+00 955.0
4 TraesCS6A01G132000 chr6D 90.928 474 37 5 2042 2512 86607310 86606840 2.930000e-177 632.0
5 TraesCS6A01G132000 chr6D 90.647 139 10 3 2578 2714 79078223 79078086 1.270000e-41 182.0
6 TraesCS6A01G132000 chr6B 92.917 2033 85 18 3737 5741 164037592 164035591 0.000000e+00 2902.0
7 TraesCS6A01G132000 chr6B 92.342 1554 84 24 782 2307 164041480 164039934 0.000000e+00 2178.0
8 TraesCS6A01G132000 chr6B 90.705 667 46 6 2916 3567 164039294 164038629 0.000000e+00 874.0
9 TraesCS6A01G132000 chr6B 93.469 245 14 2 2245 2488 164039947 164039704 4.240000e-96 363.0
10 TraesCS6A01G132000 chr6B 89.474 152 14 2 2562 2712 314581123 314581273 2.120000e-44 191.0
11 TraesCS6A01G132000 chr6B 95.455 88 4 0 3561 3648 164037680 164037593 2.160000e-29 141.0
12 TraesCS6A01G132000 chr6B 98.592 71 1 0 727 797 164041572 164041502 6.060000e-25 126.0
13 TraesCS6A01G132000 chr7D 80.972 720 95 14 3 689 553356006 553355296 3.050000e-147 532.0
14 TraesCS6A01G132000 chr7D 85.366 82 7 3 1990 2066 353937291 353937210 4.780000e-11 80.5
15 TraesCS6A01G132000 chr4B 92.701 137 9 1 2578 2713 22850823 22850687 4.550000e-46 196.0
16 TraesCS6A01G132000 chr4B 82.105 95 10 4 554 648 38757507 38757420 2.220000e-09 75.0
17 TraesCS6A01G132000 chr5A 91.971 137 9 2 2578 2713 401760882 401760747 2.120000e-44 191.0
18 TraesCS6A01G132000 chr5A 89.241 158 8 8 2562 2713 237461681 237461527 7.620000e-44 189.0
19 TraesCS6A01G132000 chr5A 89.706 68 6 1 2001 2067 594959630 594959697 1.030000e-12 86.1
20 TraesCS6A01G132000 chr4A 91.971 137 10 1 2578 2713 590222452 590222588 2.120000e-44 191.0
21 TraesCS6A01G132000 chr2A 91.176 136 11 1 2582 2716 569587129 569586994 3.540000e-42 183.0
22 TraesCS6A01G132000 chr5D 90.511 137 11 2 2578 2713 297309584 297309719 4.580000e-41 180.0
23 TraesCS6A01G132000 chr5D 91.045 67 6 0 2001 2067 45654424 45654358 2.210000e-14 91.6
24 TraesCS6A01G132000 chr1D 90.000 140 13 1 2576 2714 54906625 54906486 4.580000e-41 180.0
25 TraesCS6A01G132000 chr3D 81.690 142 25 1 1 141 466837334 466837475 3.640000e-22 117.0
26 TraesCS6A01G132000 chr3D 84.946 93 13 1 1 93 210618618 210618709 6.140000e-15 93.5
27 TraesCS6A01G132000 chr3D 91.176 68 4 2 1996 2063 567408807 567408742 2.210000e-14 91.6
28 TraesCS6A01G132000 chr3A 87.912 91 11 0 1 91 275305236 275305146 2.190000e-19 108.0
29 TraesCS6A01G132000 chr3B 92.188 64 2 1 2001 2061 411443930 411443993 2.860000e-13 87.9
30 TraesCS6A01G132000 chr3B 89.855 69 5 2 2000 2068 628472962 628473028 2.860000e-13 87.9
31 TraesCS6A01G132000 chr5B 87.179 78 5 3 2001 2078 453877994 453877922 3.700000e-12 84.2
32 TraesCS6A01G132000 chr1B 88.732 71 4 3 1998 2067 532174403 532174336 3.700000e-12 84.2
33 TraesCS6A01G132000 chr7A 85.366 82 7 3 1990 2066 391912518 391912437 4.780000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G132000 chr6A 104114650 104120406 5756 True 10632.000000 10632 100.000000 1 5757 1 chr6A.!!$R1 5756
1 TraesCS6A01G132000 chr6D 86603127 86609350 6223 True 1885.500000 3101 91.946000 1 5757 4 chr6D.!!$R2 5756
2 TraesCS6A01G132000 chr6B 164035591 164041572 5981 True 1097.333333 2902 93.913333 727 5741 6 chr6B.!!$R1 5014
3 TraesCS6A01G132000 chr7D 553355296 553356006 710 True 532.000000 532 80.972000 3 689 1 chr7D.!!$R2 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 669 1.070643 GCAATTGCAAACGTTCAAGCC 60.071 47.619 25.36 0.0 41.59 4.35 F
1981 2089 0.660300 GTTTTGAGTTTCCCGCGCAG 60.660 55.000 8.75 0.0 0.00 5.18 F
2658 3105 0.039256 GCATGCGCTTTGGTCAGAAA 60.039 50.000 9.73 0.0 34.30 2.52 F
2796 3262 0.107654 AGTTCAGGTGGGCTAATCGC 60.108 55.000 0.00 0.0 38.13 4.58 F
3705 5323 0.041982 GGGTTATGCCAGGGGGAAAA 59.958 55.000 0.00 0.0 39.65 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2580 3027 0.454196 GCTATCGCCTAGAGCCTAGC 59.546 60.000 12.44 12.44 40.20 3.42 R
3686 5304 0.041982 TTTTCCCCCTGGCATAACCC 59.958 55.000 0.00 0.00 37.83 4.11 R
3693 5311 0.544120 TTCACCATTTTCCCCCTGGC 60.544 55.000 0.00 0.00 33.12 4.85 R
3725 5343 1.075050 AGTTCCGTCCTCCACTACTCA 59.925 52.381 0.00 0.00 0.00 3.41 R
5357 7241 0.249699 ACGCACCGACATGTTCAAGA 60.250 50.000 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 5.078411 TGCAATTTTACCACCGCAATAAT 57.922 34.783 0.00 0.00 0.00 1.28
68 69 2.094752 ACCGCAATAATTGGTCTGTTGC 60.095 45.455 0.00 0.00 41.15 4.17
91 92 1.292223 CCCAGAAGACGAAGGCGAA 59.708 57.895 0.00 0.00 41.64 4.70
122 123 2.819595 CATCCCCGCAACACCGAG 60.820 66.667 0.00 0.00 0.00 4.63
189 224 1.903877 ATGGTAGCGAGGTTGCAGCT 61.904 55.000 0.00 1.10 44.24 4.24
235 270 4.015406 ATCCGCTTCCACCACGCA 62.015 61.111 0.00 0.00 0.00 5.24
243 278 4.640855 CCACCACGCACGTCGACT 62.641 66.667 14.70 0.00 41.67 4.18
251 286 2.521771 GCACGTCGACTGCACACAA 61.522 57.895 25.27 0.00 34.56 3.33
286 321 4.742649 AGAGGAGGCGAGGCGACA 62.743 66.667 0.00 0.00 37.34 4.35
358 395 2.370349 CGTCACTACTCCCTCATCACT 58.630 52.381 0.00 0.00 0.00 3.41
359 396 2.098280 CGTCACTACTCCCTCATCACTG 59.902 54.545 0.00 0.00 0.00 3.66
384 421 3.638627 TGACAGGAGATCACTGCGAATAT 59.361 43.478 15.02 0.00 39.55 1.28
389 426 3.743396 GGAGATCACTGCGAATATCCAAC 59.257 47.826 0.00 0.00 0.00 3.77
429 481 4.292186 ACATCCTCACTGTTGCTACATT 57.708 40.909 0.34 0.00 32.86 2.71
592 649 4.737054 GTTCTGCAATATGAACTGGGTTG 58.263 43.478 8.81 0.00 39.36 3.77
612 669 1.070643 GCAATTGCAAACGTTCAAGCC 60.071 47.619 25.36 0.00 41.59 4.35
699 756 2.529619 GCGAGGCGGCAGATCTTTC 61.530 63.158 13.08 0.00 0.00 2.62
707 764 2.414691 GCGGCAGATCTTTCAAAAGGAC 60.415 50.000 0.00 0.00 36.67 3.85
722 779 5.905913 TCAAAAGGACCTCCCCAAAATAAAA 59.094 36.000 0.00 0.00 36.42 1.52
725 782 3.665618 AGGACCTCCCCAAAATAAAAGGA 59.334 43.478 0.00 0.00 36.42 3.36
1214 1309 1.690219 CCCTCACATCCCCTCTTCCG 61.690 65.000 0.00 0.00 0.00 4.30
1429 1527 2.747135 CGACAAAACAGGGGTTAGGTGT 60.747 50.000 0.00 0.00 35.82 4.16
1431 1529 3.028130 ACAAAACAGGGGTTAGGTGTTG 58.972 45.455 0.00 0.00 35.82 3.33
1439 1537 1.467342 GGGTTAGGTGTTGTGATTCGC 59.533 52.381 0.00 0.00 0.00 4.70
1566 1664 3.782656 TCTTTTCGGCTATATTCCCCC 57.217 47.619 0.00 0.00 0.00 5.40
1585 1683 2.116238 CCCTTAGGCTAGCAGTGGTTA 58.884 52.381 18.24 0.00 0.00 2.85
1590 1688 3.828875 AGGCTAGCAGTGGTTATTCTC 57.171 47.619 18.24 0.00 0.00 2.87
1598 1696 4.702131 AGCAGTGGTTATTCTCATGTTTCC 59.298 41.667 0.00 0.00 0.00 3.13
1626 1724 3.870559 TGAGAGGTAAAAGGGAGGAAGT 58.129 45.455 0.00 0.00 0.00 3.01
1631 1729 6.722328 AGAGGTAAAAGGGAGGAAGTTTATG 58.278 40.000 0.00 0.00 0.00 1.90
1784 1889 6.052405 AGGGATGGTGTTTACAAACGTATA 57.948 37.500 0.00 0.00 41.74 1.47
1814 1919 1.541588 CTTGCAAAGTGGGGAAGTAGC 59.458 52.381 0.00 0.00 39.70 3.58
1864 1969 7.004086 TCTGTTTTGGTAATCCTTGTCAAGAT 58.996 34.615 14.42 3.29 34.23 2.40
1879 1984 5.401550 TGTCAAGATTTCATTTCCGATTGC 58.598 37.500 0.00 0.00 0.00 3.56
1885 1990 4.925061 TTTCATTTCCGATTGCAATTGC 57.075 36.364 23.69 23.69 42.50 3.56
1910 2015 3.056179 TGCCACAATGTAGATTCGAGTGA 60.056 43.478 3.85 0.00 0.00 3.41
1941 2048 7.001674 TCATCCCACACAGTTACAATAGTTTT 58.998 34.615 0.00 0.00 0.00 2.43
1975 2083 9.817809 AAAATCTTAAAGAGTTTTGAGTTTCCC 57.182 29.630 0.00 0.00 39.17 3.97
1976 2084 6.613755 TCTTAAAGAGTTTTGAGTTTCCCG 57.386 37.500 0.00 0.00 33.11 5.14
1981 2089 0.660300 GTTTTGAGTTTCCCGCGCAG 60.660 55.000 8.75 0.00 0.00 5.18
1982 2090 1.098712 TTTTGAGTTTCCCGCGCAGT 61.099 50.000 8.75 0.00 0.00 4.40
1983 2091 1.503818 TTTGAGTTTCCCGCGCAGTC 61.504 55.000 8.75 0.00 0.00 3.51
1985 2093 4.295119 AGTTTCCCGCGCAGTCGT 62.295 61.111 8.75 0.00 38.14 4.34
2009 2117 6.153170 GTGAAGCTAGTTTTACTACTCCCTCT 59.847 42.308 6.94 0.00 0.00 3.69
2023 2131 8.980832 ACTACTCCCTCTGATCCATATTAATT 57.019 34.615 0.00 0.00 0.00 1.40
2029 2137 6.169094 CCTCTGATCCATATTAATTGTCGCT 58.831 40.000 0.00 0.00 0.00 4.93
2030 2138 6.091849 CCTCTGATCCATATTAATTGTCGCTG 59.908 42.308 0.00 0.00 0.00 5.18
2031 2139 6.758254 TCTGATCCATATTAATTGTCGCTGA 58.242 36.000 0.00 0.00 0.00 4.26
2032 2140 7.389232 TCTGATCCATATTAATTGTCGCTGAT 58.611 34.615 0.00 0.00 0.00 2.90
2034 2142 8.394971 TGATCCATATTAATTGTCGCTGATTT 57.605 30.769 0.00 0.00 0.00 2.17
2035 2143 9.500785 TGATCCATATTAATTGTCGCTGATTTA 57.499 29.630 0.00 0.00 0.00 1.40
2036 2144 9.979270 GATCCATATTAATTGTCGCTGATTTAG 57.021 33.333 0.00 0.00 0.00 1.85
2038 2146 9.990360 TCCATATTAATTGTCGCTGATTTAGTA 57.010 29.630 0.00 0.00 0.00 1.82
2048 2187 7.735500 TGTCGCTGATTTAGTACAACAATTAC 58.264 34.615 0.00 0.00 0.00 1.89
2063 2202 3.583086 ACAATTACTATGGATCGGAGGGG 59.417 47.826 0.00 0.00 0.00 4.79
2080 2219 6.711645 TCGGAGGGGGTAATTAATTATTTTCG 59.288 38.462 11.00 9.08 0.00 3.46
2153 2296 8.999905 TTAGGGTAATTGTTAGACTTGGTTTT 57.000 30.769 0.00 0.00 0.00 2.43
2180 2324 8.131100 AGTTTCATACAGTGTGTTTTTCTGATG 58.869 33.333 5.88 0.00 33.93 3.07
2186 2330 7.099266 ACAGTGTGTTTTTCTGATGATTTGA 57.901 32.000 0.00 0.00 33.93 2.69
2207 2351 1.526917 GTGCCTGCACAGTCCTGTT 60.527 57.895 16.95 0.00 45.53 3.16
2230 2374 2.305927 CTGCTCTTTCTGTTCCCCCTTA 59.694 50.000 0.00 0.00 0.00 2.69
2237 2381 3.278987 TCTGTTCCCCCTTAGTTGGTA 57.721 47.619 0.00 0.00 0.00 3.25
2307 2502 7.108841 GGAACCCCAAATAATTACCTTCTTC 57.891 40.000 0.00 0.00 0.00 2.87
2325 2520 6.402983 CCTTCTTCGATTGAGTTGAGAAATGG 60.403 42.308 0.00 0.00 0.00 3.16
2334 2529 5.886609 TGAGTTGAGAAATGGGGATGTTTA 58.113 37.500 0.00 0.00 0.00 2.01
2342 2537 5.970640 AGAAATGGGGATGTTTAGAGACCTA 59.029 40.000 0.00 0.00 0.00 3.08
2351 2546 7.715686 GGGATGTTTAGAGACCTACCATTTAAG 59.284 40.741 0.00 0.00 0.00 1.85
2403 2598 9.083080 CAAGGGTTTTACGAATTCATATTTTCC 57.917 33.333 6.22 0.00 0.00 3.13
2434 2629 1.654220 CAACGCTCCACCCAAAGTG 59.346 57.895 0.00 0.00 46.83 3.16
2485 2681 9.546428 CTTGAACTTTTGAACAGGGATTATTTT 57.454 29.630 0.00 0.00 0.00 1.82
2495 2691 5.946486 ACAGGGATTATTTTCCTCATCCTC 58.054 41.667 0.00 0.00 36.24 3.71
2498 2694 7.017056 ACAGGGATTATTTTCCTCATCCTCTAG 59.983 40.741 0.00 0.00 36.24 2.43
2505 2701 6.831664 TTTTCCTCATCCTCTAGCCTTTAT 57.168 37.500 0.00 0.00 0.00 1.40
2506 2702 6.831664 TTTCCTCATCCTCTAGCCTTTATT 57.168 37.500 0.00 0.00 0.00 1.40
2507 2703 7.931015 TTTCCTCATCCTCTAGCCTTTATTA 57.069 36.000 0.00 0.00 0.00 0.98
2508 2704 7.546250 TTCCTCATCCTCTAGCCTTTATTAG 57.454 40.000 0.00 0.00 0.00 1.73
2509 2705 6.864421 TCCTCATCCTCTAGCCTTTATTAGA 58.136 40.000 0.00 0.00 0.00 2.10
2510 2706 7.483018 TCCTCATCCTCTAGCCTTTATTAGAT 58.517 38.462 0.00 0.00 0.00 1.98
2511 2707 7.398618 TCCTCATCCTCTAGCCTTTATTAGATG 59.601 40.741 0.00 0.00 0.00 2.90
2512 2708 7.364585 CCTCATCCTCTAGCCTTTATTAGATGG 60.365 44.444 0.00 0.00 31.66 3.51
2513 2709 7.019388 TCATCCTCTAGCCTTTATTAGATGGT 58.981 38.462 0.00 0.00 31.66 3.55
2515 2711 8.816894 CATCCTCTAGCCTTTATTAGATGGTTA 58.183 37.037 0.00 0.00 0.00 2.85
2516 2712 8.792830 TCCTCTAGCCTTTATTAGATGGTTAA 57.207 34.615 0.00 0.00 0.00 2.01
2536 2983 8.564574 TGGTTAAGTTTGTATCTGCTAGTTTTG 58.435 33.333 0.00 0.00 0.00 2.44
2539 2986 6.246420 AGTTTGTATCTGCTAGTTTTGCTG 57.754 37.500 0.00 0.00 0.00 4.41
2554 3001 1.261480 TGCTGTTGTTTGGGTTGTGT 58.739 45.000 0.00 0.00 0.00 3.72
2555 3002 1.067283 TGCTGTTGTTTGGGTTGTGTG 60.067 47.619 0.00 0.00 0.00 3.82
2556 3003 1.639280 CTGTTGTTTGGGTTGTGTGC 58.361 50.000 0.00 0.00 0.00 4.57
2557 3004 1.204467 CTGTTGTTTGGGTTGTGTGCT 59.796 47.619 0.00 0.00 0.00 4.40
2558 3005 1.203523 TGTTGTTTGGGTTGTGTGCTC 59.796 47.619 0.00 0.00 0.00 4.26
2559 3006 0.820871 TTGTTTGGGTTGTGTGCTCC 59.179 50.000 0.00 0.00 0.00 4.70
2560 3007 1.358759 GTTTGGGTTGTGTGCTCCG 59.641 57.895 0.00 0.00 0.00 4.63
2561 3008 2.485795 TTTGGGTTGTGTGCTCCGC 61.486 57.895 0.00 0.00 0.00 5.54
2562 3009 3.705934 TTGGGTTGTGTGCTCCGCA 62.706 57.895 0.00 0.00 35.60 5.69
2563 3010 2.672996 GGGTTGTGTGCTCCGCAT 60.673 61.111 0.00 0.00 41.91 4.73
2564 3011 1.376683 GGGTTGTGTGCTCCGCATA 60.377 57.895 0.00 0.00 41.91 3.14
2565 3012 1.369091 GGGTTGTGTGCTCCGCATAG 61.369 60.000 0.00 0.00 41.91 2.23
2566 3013 0.673644 GGTTGTGTGCTCCGCATAGT 60.674 55.000 0.00 0.00 41.91 2.12
2567 3014 1.156736 GTTGTGTGCTCCGCATAGTT 58.843 50.000 0.00 0.00 41.91 2.24
2568 3015 2.343101 GTTGTGTGCTCCGCATAGTTA 58.657 47.619 0.00 0.00 41.91 2.24
2569 3016 2.739913 GTTGTGTGCTCCGCATAGTTAA 59.260 45.455 0.00 0.00 41.91 2.01
2570 3017 3.046968 TGTGTGCTCCGCATAGTTAAA 57.953 42.857 0.00 0.00 41.91 1.52
2571 3018 3.403968 TGTGTGCTCCGCATAGTTAAAA 58.596 40.909 0.00 0.00 41.91 1.52
2572 3019 3.815962 TGTGTGCTCCGCATAGTTAAAAA 59.184 39.130 0.00 0.00 41.91 1.94
2586 3033 3.440415 AAAAAGGCGCGGCTAGGC 61.440 61.111 36.46 6.15 0.00 3.93
2587 3034 3.920093 AAAAAGGCGCGGCTAGGCT 62.920 57.895 36.46 17.95 46.93 4.58
2588 3035 4.840005 AAAGGCGCGGCTAGGCTC 62.840 66.667 36.46 5.34 44.05 4.70
2590 3037 4.896829 AGGCGCGGCTAGGCTCTA 62.897 66.667 35.57 0.00 40.72 2.43
2591 3038 4.350441 GGCGCGGCTAGGCTCTAG 62.350 72.222 27.05 3.99 0.00 2.43
2592 3039 4.350441 GCGCGGCTAGGCTCTAGG 62.350 72.222 15.11 0.00 0.00 3.02
2593 3040 4.350441 CGCGGCTAGGCTCTAGGC 62.350 72.222 15.11 19.40 41.43 3.93
2596 3043 4.105388 GGCTAGGCTCTAGGCGAT 57.895 61.111 9.46 0.00 46.23 4.58
2597 3044 3.267908 GGCTAGGCTCTAGGCGATA 57.732 57.895 9.46 0.00 46.23 2.92
2598 3045 1.099689 GGCTAGGCTCTAGGCGATAG 58.900 60.000 9.46 0.00 46.23 2.08
2612 3059 2.998668 CGATAGCAAAACGCCTAGTG 57.001 50.000 0.00 0.00 44.04 2.74
2613 3060 1.004927 CGATAGCAAAACGCCTAGTGC 60.005 52.381 0.00 0.00 44.04 4.40
2614 3061 2.006888 GATAGCAAAACGCCTAGTGCA 58.993 47.619 3.89 0.00 44.04 4.57
2615 3062 2.107950 TAGCAAAACGCCTAGTGCAT 57.892 45.000 0.00 0.00 44.04 3.96
2616 3063 2.107950 AGCAAAACGCCTAGTGCATA 57.892 45.000 0.00 0.00 44.04 3.14
2617 3064 2.432444 AGCAAAACGCCTAGTGCATAA 58.568 42.857 0.00 0.00 44.04 1.90
2618 3065 3.016736 AGCAAAACGCCTAGTGCATAAT 58.983 40.909 0.00 0.00 44.04 1.28
2619 3066 3.065371 AGCAAAACGCCTAGTGCATAATC 59.935 43.478 0.00 0.00 44.04 1.75
2620 3067 3.607439 CAAAACGCCTAGTGCATAATCG 58.393 45.455 0.00 0.00 41.33 3.34
2621 3068 1.217882 AACGCCTAGTGCATAATCGC 58.782 50.000 0.00 0.00 41.33 4.58
2622 3069 0.939577 ACGCCTAGTGCATAATCGCG 60.940 55.000 0.00 0.00 43.45 5.87
2623 3070 1.493311 GCCTAGTGCATAATCGCGC 59.507 57.895 0.00 0.00 42.82 6.86
2630 3077 3.795561 GTGCATAATCGCGCTTAATCT 57.204 42.857 6.49 0.00 39.35 2.40
2631 3078 3.473367 GTGCATAATCGCGCTTAATCTG 58.527 45.455 6.49 2.25 39.35 2.90
2632 3079 2.096268 TGCATAATCGCGCTTAATCTGC 60.096 45.455 15.97 15.97 33.35 4.26
2640 3087 1.942585 CGCTTAATCTGCGCATAAGC 58.057 50.000 30.75 30.75 46.72 3.09
2642 3089 3.549299 GCTTAATCTGCGCATAAGCAT 57.451 42.857 33.42 13.90 46.73 3.79
2643 3090 3.231965 GCTTAATCTGCGCATAAGCATG 58.768 45.455 33.42 14.95 46.73 4.06
2656 3103 3.266964 GCATGCGCTTTGGTCAGA 58.733 55.556 9.73 0.00 34.30 3.27
2657 3104 1.580942 GCATGCGCTTTGGTCAGAA 59.419 52.632 9.73 0.00 34.30 3.02
2658 3105 0.039256 GCATGCGCTTTGGTCAGAAA 60.039 50.000 9.73 0.00 34.30 2.52
2659 3106 1.602668 GCATGCGCTTTGGTCAGAAAA 60.603 47.619 9.73 0.00 34.30 2.29
2660 3107 2.322161 CATGCGCTTTGGTCAGAAAAG 58.678 47.619 9.73 0.00 37.63 2.27
2665 3112 2.490328 CTTTGGTCAGAAAAGCGCAA 57.510 45.000 11.47 0.00 0.00 4.85
2666 3113 2.388121 CTTTGGTCAGAAAAGCGCAAG 58.612 47.619 11.47 0.00 43.44 4.01
2667 3114 0.667993 TTGGTCAGAAAAGCGCAAGG 59.332 50.000 11.47 0.00 38.28 3.61
2668 3115 0.179032 TGGTCAGAAAAGCGCAAGGA 60.179 50.000 11.47 0.00 38.28 3.36
2669 3116 0.519077 GGTCAGAAAAGCGCAAGGAG 59.481 55.000 11.47 0.00 38.28 3.69
2670 3117 0.519077 GTCAGAAAAGCGCAAGGAGG 59.481 55.000 11.47 0.00 38.28 4.30
2671 3118 0.108585 TCAGAAAAGCGCAAGGAGGT 59.891 50.000 11.47 0.00 38.28 3.85
2672 3119 0.239347 CAGAAAAGCGCAAGGAGGTG 59.761 55.000 11.47 0.00 38.28 4.00
2673 3120 0.890996 AGAAAAGCGCAAGGAGGTGG 60.891 55.000 11.47 0.00 38.28 4.61
2674 3121 2.477972 GAAAAGCGCAAGGAGGTGGC 62.478 60.000 11.47 0.00 38.28 5.01
2675 3122 3.790416 AAAGCGCAAGGAGGTGGCA 62.790 57.895 11.47 0.00 38.28 4.92
2676 3123 3.790416 AAGCGCAAGGAGGTGGCAA 62.790 57.895 11.47 0.00 38.28 4.52
2677 3124 3.294493 GCGCAAGGAGGTGGCAAA 61.294 61.111 0.30 0.00 38.28 3.68
2678 3125 2.644992 CGCAAGGAGGTGGCAAAC 59.355 61.111 0.00 0.00 0.00 2.93
2679 3126 2.644992 GCAAGGAGGTGGCAAACG 59.355 61.111 0.00 0.00 0.00 3.60
2680 3127 2.644992 CAAGGAGGTGGCAAACGC 59.355 61.111 0.00 0.00 0.00 4.84
2681 3128 2.978010 AAGGAGGTGGCAAACGCG 60.978 61.111 3.53 3.53 0.00 6.01
2684 3131 3.959975 GAGGTGGCAAACGCGCAA 61.960 61.111 5.73 0.00 0.00 4.85
2685 3132 3.267597 GAGGTGGCAAACGCGCAAT 62.268 57.895 5.73 0.00 0.00 3.56
2686 3133 2.355718 GGTGGCAAACGCGCAATT 60.356 55.556 5.73 0.00 0.00 2.32
2687 3134 1.081108 GGTGGCAAACGCGCAATTA 60.081 52.632 5.73 0.00 0.00 1.40
2688 3135 0.664767 GGTGGCAAACGCGCAATTAA 60.665 50.000 5.73 0.00 0.00 1.40
2689 3136 0.433115 GTGGCAAACGCGCAATTAAC 59.567 50.000 5.73 0.00 0.00 2.01
2690 3137 0.999228 TGGCAAACGCGCAATTAACG 60.999 50.000 5.73 0.00 0.00 3.18
2730 3177 1.079750 GGTTGCTCGGTCACCTCTC 60.080 63.158 0.00 0.00 0.00 3.20
2733 3180 3.462678 GCTCGGTCACCTCTCCCC 61.463 72.222 0.00 0.00 0.00 4.81
2736 3183 3.775654 CGGTCACCTCTCCCCTGC 61.776 72.222 0.00 0.00 0.00 4.85
2740 3187 3.406200 CACCTCTCCCCTGCCTGG 61.406 72.222 0.00 0.00 0.00 4.45
2749 3196 1.379843 CCCTGCCTGGCCGTTATTT 60.380 57.895 17.53 0.00 0.00 1.40
2751 3198 1.384222 CCTGCCTGGCCGTTATTTCC 61.384 60.000 17.53 0.00 0.00 3.13
2766 3232 3.644966 ATTTCCGGGCTCAATGTCTTA 57.355 42.857 0.00 0.00 0.00 2.10
2783 3249 8.971321 CAATGTCTTAATGGAAAAACAGTTCAG 58.029 33.333 0.00 0.00 0.00 3.02
2792 3258 3.306472 AAAACAGTTCAGGTGGGCTAA 57.694 42.857 0.00 0.00 0.00 3.09
2793 3259 3.525800 AAACAGTTCAGGTGGGCTAAT 57.474 42.857 0.00 0.00 0.00 1.73
2794 3260 2.789409 ACAGTTCAGGTGGGCTAATC 57.211 50.000 0.00 0.00 0.00 1.75
2795 3261 1.066143 ACAGTTCAGGTGGGCTAATCG 60.066 52.381 0.00 0.00 0.00 3.34
2796 3262 0.107654 AGTTCAGGTGGGCTAATCGC 60.108 55.000 0.00 0.00 38.13 4.58
2823 3289 2.292587 ACCCCACCTGACCTTTCAAAAA 60.293 45.455 0.00 0.00 0.00 1.94
2861 3402 5.564127 GCGTTGTTTAAACTATTGAGCTGTC 59.436 40.000 18.72 0.00 0.00 3.51
2884 3425 0.466189 AGGTCACACTGGCAAAGGTG 60.466 55.000 4.03 4.03 39.13 4.00
2886 3427 1.152777 TCACACTGGCAAAGGTGGG 60.153 57.895 9.75 5.87 38.12 4.61
2899 3440 2.008242 AGGTGGGTTGCAATGCTTAA 57.992 45.000 6.82 0.00 0.00 1.85
3032 3690 8.479313 TCAGTCATTGTGCTAATTTAGTACTG 57.521 34.615 20.63 13.77 41.28 2.74
3051 3709 5.727243 ACTGGCCCAACCTTACTAAATAT 57.273 39.130 0.00 0.00 40.22 1.28
3078 3736 7.543868 GCTAGTATTCTGTGTAGCATTAGGATG 59.456 40.741 0.00 0.00 38.23 3.51
3120 3778 9.293404 CATTGGACATATATGATTTCCTGTCTT 57.707 33.333 19.63 0.00 34.77 3.01
3214 3872 3.190535 GTGAATCCTACACAATGGCGTTT 59.809 43.478 0.00 0.00 38.05 3.60
3260 3919 9.988815 CACTAGCATTTCCTGTTACTCTTATAT 57.011 33.333 0.00 0.00 0.00 0.86
3291 3950 6.711194 TGGAATTCAACATGTGCAAATTGATT 59.289 30.769 14.55 2.54 31.45 2.57
3301 3960 1.467374 GCAAATTGATTCCGACCACCG 60.467 52.381 0.00 0.00 38.18 4.94
3355 4014 8.190784 CCTATTGCGTTATTTCTTTCATTCCTT 58.809 33.333 0.00 0.00 0.00 3.36
3361 4020 6.523201 CGTTATTTCTTTCATTCCTTTGTCCG 59.477 38.462 0.00 0.00 0.00 4.79
3367 4026 2.257207 TCATTCCTTTGTCCGGAGTCT 58.743 47.619 3.06 0.00 0.00 3.24
3381 4041 6.013984 TGTCCGGAGTCTTTCCTTAGTAAAAT 60.014 38.462 3.06 0.00 44.41 1.82
3464 4127 3.353836 GCCAAGGCTCAAACGCGA 61.354 61.111 15.93 0.00 38.26 5.87
3489 4152 2.106683 GGCTAGGTTGCGCAATCGT 61.107 57.895 27.79 21.31 38.14 3.73
3505 4168 2.701780 CGTCTCCACGCCACTAGCT 61.702 63.158 0.00 0.00 39.69 3.32
3548 4211 5.424252 TCCTATTCCCTAGTCAAACACGATT 59.576 40.000 0.00 0.00 0.00 3.34
3551 4214 3.670625 TCCCTAGTCAAACACGATTTGG 58.329 45.455 14.12 1.86 0.00 3.28
3614 5232 7.202102 GGGGAGGTAAGAAATAGCAGAAATAGA 60.202 40.741 0.00 0.00 34.36 1.98
3629 5247 6.017852 GCAGAAATAGAAAGGGATAAAGACCG 60.018 42.308 0.00 0.00 0.00 4.79
3646 5264 1.279271 ACCGGTGAATGAGAAGAAGGG 59.721 52.381 6.12 0.00 0.00 3.95
3647 5265 1.407437 CCGGTGAATGAGAAGAAGGGG 60.407 57.143 0.00 0.00 0.00 4.79
3651 5269 3.264450 GGTGAATGAGAAGAAGGGGAAGA 59.736 47.826 0.00 0.00 0.00 2.87
3652 5270 4.263506 GGTGAATGAGAAGAAGGGGAAGAA 60.264 45.833 0.00 0.00 0.00 2.52
3653 5271 4.940654 GTGAATGAGAAGAAGGGGAAGAAG 59.059 45.833 0.00 0.00 0.00 2.85
3654 5272 4.018960 TGAATGAGAAGAAGGGGAAGAAGG 60.019 45.833 0.00 0.00 0.00 3.46
3655 5273 1.630878 TGAGAAGAAGGGGAAGAAGGC 59.369 52.381 0.00 0.00 0.00 4.35
3656 5274 1.912731 GAGAAGAAGGGGAAGAAGGCT 59.087 52.381 0.00 0.00 0.00 4.58
3657 5275 1.632920 AGAAGAAGGGGAAGAAGGCTG 59.367 52.381 0.00 0.00 0.00 4.85
3658 5276 1.352687 GAAGAAGGGGAAGAAGGCTGT 59.647 52.381 0.00 0.00 0.00 4.40
3659 5277 0.695347 AGAAGGGGAAGAAGGCTGTG 59.305 55.000 0.00 0.00 0.00 3.66
3660 5278 0.322906 GAAGGGGAAGAAGGCTGTGG 60.323 60.000 0.00 0.00 0.00 4.17
3661 5279 1.793820 AAGGGGAAGAAGGCTGTGGG 61.794 60.000 0.00 0.00 0.00 4.61
3662 5280 2.356667 GGGAAGAAGGCTGTGGGG 59.643 66.667 0.00 0.00 0.00 4.96
3663 5281 2.231380 GGGAAGAAGGCTGTGGGGA 61.231 63.158 0.00 0.00 0.00 4.81
3664 5282 1.301293 GGAAGAAGGCTGTGGGGAG 59.699 63.158 0.00 0.00 0.00 4.30
3665 5283 1.377856 GAAGAAGGCTGTGGGGAGC 60.378 63.158 0.00 0.00 38.34 4.70
3666 5284 2.129555 GAAGAAGGCTGTGGGGAGCA 62.130 60.000 0.00 0.00 41.08 4.26
3667 5285 2.045536 GAAGGCTGTGGGGAGCAG 60.046 66.667 0.00 0.00 41.08 4.24
3668 5286 2.530151 AAGGCTGTGGGGAGCAGA 60.530 61.111 0.00 0.00 41.08 4.26
3669 5287 1.919600 GAAGGCTGTGGGGAGCAGAT 61.920 60.000 0.00 0.00 41.08 2.90
3670 5288 2.124403 GGCTGTGGGGAGCAGATG 60.124 66.667 0.00 0.00 41.08 2.90
3671 5289 2.673523 GCTGTGGGGAGCAGATGT 59.326 61.111 0.00 0.00 38.95 3.06
3672 5290 1.748122 GCTGTGGGGAGCAGATGTG 60.748 63.158 0.00 0.00 38.95 3.21
3673 5291 1.077930 CTGTGGGGAGCAGATGTGG 60.078 63.158 0.00 0.00 36.12 4.17
3674 5292 1.538629 TGTGGGGAGCAGATGTGGA 60.539 57.895 0.00 0.00 0.00 4.02
3675 5293 1.133181 TGTGGGGAGCAGATGTGGAA 61.133 55.000 0.00 0.00 0.00 3.53
3676 5294 0.678048 GTGGGGAGCAGATGTGGAAC 60.678 60.000 0.00 0.00 37.35 3.62
3688 5306 0.764890 TGTGGAACAGTGGAAGAGGG 59.235 55.000 0.00 0.00 45.67 4.30
3689 5307 0.765510 GTGGAACAGTGGAAGAGGGT 59.234 55.000 0.00 0.00 41.80 4.34
3690 5308 1.143073 GTGGAACAGTGGAAGAGGGTT 59.857 52.381 0.00 0.00 41.80 4.11
3691 5309 2.370849 GTGGAACAGTGGAAGAGGGTTA 59.629 50.000 0.00 0.00 41.80 2.85
3692 5310 3.009143 GTGGAACAGTGGAAGAGGGTTAT 59.991 47.826 0.00 0.00 41.80 1.89
3693 5311 3.009033 TGGAACAGTGGAAGAGGGTTATG 59.991 47.826 0.00 0.00 0.00 1.90
3694 5312 2.789409 ACAGTGGAAGAGGGTTATGC 57.211 50.000 0.00 0.00 0.00 3.14
3695 5313 1.282157 ACAGTGGAAGAGGGTTATGCC 59.718 52.381 0.00 0.00 0.00 4.40
3696 5314 1.281867 CAGTGGAAGAGGGTTATGCCA 59.718 52.381 0.00 0.00 39.65 4.92
3697 5315 1.561542 AGTGGAAGAGGGTTATGCCAG 59.438 52.381 0.00 0.00 39.65 4.85
3698 5316 0.918983 TGGAAGAGGGTTATGCCAGG 59.081 55.000 0.00 0.00 39.65 4.45
3699 5317 0.183731 GGAAGAGGGTTATGCCAGGG 59.816 60.000 0.00 0.00 39.65 4.45
3700 5318 0.183731 GAAGAGGGTTATGCCAGGGG 59.816 60.000 0.00 0.00 39.65 4.79
3701 5319 1.289244 AAGAGGGTTATGCCAGGGGG 61.289 60.000 0.00 0.00 39.65 5.40
3702 5320 1.696314 GAGGGTTATGCCAGGGGGA 60.696 63.158 0.00 0.00 39.65 4.81
3703 5321 1.230482 AGGGTTATGCCAGGGGGAA 60.230 57.895 0.00 0.00 39.65 3.97
3704 5322 0.853586 AGGGTTATGCCAGGGGGAAA 60.854 55.000 0.00 0.00 39.65 3.13
3705 5323 0.041982 GGGTTATGCCAGGGGGAAAA 59.958 55.000 0.00 0.00 39.65 2.29
3706 5324 1.343985 GGGTTATGCCAGGGGGAAAAT 60.344 52.381 0.00 0.00 39.65 1.82
3707 5325 1.762370 GGTTATGCCAGGGGGAAAATG 59.238 52.381 0.00 0.00 37.17 2.32
3708 5326 1.762370 GTTATGCCAGGGGGAAAATGG 59.238 52.381 0.00 0.00 35.59 3.16
3709 5327 1.014804 TATGCCAGGGGGAAAATGGT 58.985 50.000 0.00 0.00 36.43 3.55
3710 5328 0.618393 ATGCCAGGGGGAAAATGGTG 60.618 55.000 0.00 0.00 36.43 4.17
3711 5329 1.078347 GCCAGGGGGAAAATGGTGA 59.922 57.895 0.00 0.00 36.43 4.02
3712 5330 0.544120 GCCAGGGGGAAAATGGTGAA 60.544 55.000 0.00 0.00 36.43 3.18
3713 5331 2.022718 CCAGGGGGAAAATGGTGAAA 57.977 50.000 0.00 0.00 35.59 2.69
3714 5332 2.550175 CCAGGGGGAAAATGGTGAAAT 58.450 47.619 0.00 0.00 35.59 2.17
3715 5333 2.501316 CCAGGGGGAAAATGGTGAAATC 59.499 50.000 0.00 0.00 35.59 2.17
3716 5334 3.444029 CAGGGGGAAAATGGTGAAATCT 58.556 45.455 0.00 0.00 0.00 2.40
3717 5335 4.571792 CCAGGGGGAAAATGGTGAAATCTA 60.572 45.833 0.00 0.00 35.59 1.98
3718 5336 5.211201 CAGGGGGAAAATGGTGAAATCTAT 58.789 41.667 0.00 0.00 0.00 1.98
3719 5337 5.662657 CAGGGGGAAAATGGTGAAATCTATT 59.337 40.000 0.00 0.00 0.00 1.73
3720 5338 5.662657 AGGGGGAAAATGGTGAAATCTATTG 59.337 40.000 0.00 0.00 0.00 1.90
3721 5339 5.359756 GGGGAAAATGGTGAAATCTATTGC 58.640 41.667 0.00 0.00 0.00 3.56
3722 5340 5.104982 GGGGAAAATGGTGAAATCTATTGCA 60.105 40.000 0.00 0.00 0.00 4.08
3723 5341 6.405538 GGGAAAATGGTGAAATCTATTGCAA 58.594 36.000 0.00 0.00 0.00 4.08
3724 5342 7.049754 GGGAAAATGGTGAAATCTATTGCAAT 58.950 34.615 17.56 17.56 0.00 3.56
3725 5343 7.553760 GGGAAAATGGTGAAATCTATTGCAATT 59.446 33.333 18.75 0.00 0.00 2.32
3726 5344 8.392612 GGAAAATGGTGAAATCTATTGCAATTG 58.607 33.333 18.75 16.01 0.00 2.32
3727 5345 9.153721 GAAAATGGTGAAATCTATTGCAATTGA 57.846 29.630 22.72 22.72 0.00 2.57
3728 5346 8.712285 AAATGGTGAAATCTATTGCAATTGAG 57.288 30.769 24.16 14.64 0.00 3.02
3729 5347 6.839124 TGGTGAAATCTATTGCAATTGAGT 57.161 33.333 24.16 20.40 0.00 3.41
3730 5348 7.936496 TGGTGAAATCTATTGCAATTGAGTA 57.064 32.000 24.16 9.12 0.00 2.59
3731 5349 7.988737 TGGTGAAATCTATTGCAATTGAGTAG 58.011 34.615 24.16 13.34 0.00 2.57
3749 5605 3.521126 AGTAGTGGAGGACGGAACTAGTA 59.479 47.826 0.00 0.00 29.15 1.82
3753 5609 3.446516 GTGGAGGACGGAACTAGTATTGT 59.553 47.826 0.00 0.00 0.00 2.71
3795 5655 6.014669 TGAATGAGTGGTATTTTGGAAAAGGG 60.015 38.462 0.00 0.00 0.00 3.95
3802 5662 6.264292 GTGGTATTTTGGAAAAGGGCAATTTT 59.736 34.615 0.00 0.00 35.12 1.82
3846 5711 5.429681 TTCCCTTAAGTGCAGCACTAATA 57.570 39.130 28.48 15.23 44.62 0.98
3915 5781 7.199766 ACGTCAATGAAAATAATGTTGTGTGT 58.800 30.769 0.00 0.00 0.00 3.72
3919 5785 8.412456 TCAATGAAAATAATGTTGTGTGTCTGT 58.588 29.630 0.00 0.00 0.00 3.41
3954 5820 3.721575 TCTGTGGGGGATGCAAATATAGT 59.278 43.478 0.00 0.00 0.00 2.12
3987 5853 2.718731 CAACGTTTCTTGGCGGCA 59.281 55.556 7.97 7.97 0.00 5.69
4144 6010 2.954611 GCGAAAGGCTCAACCCAC 59.045 61.111 0.00 0.00 40.58 4.61
4166 6032 4.166919 ACTGCCAGGGAGCTATATTTCTTT 59.833 41.667 8.15 0.00 0.00 2.52
4260 6130 2.358957 TGCCCTTGAAGATGTTGATCG 58.641 47.619 0.00 0.00 33.34 3.69
4274 6144 2.864343 GTTGATCGTTCCTGGTATTCCG 59.136 50.000 0.00 0.00 36.30 4.30
4326 6196 5.471116 TGATTATTCTGATGATCCCTTTGCG 59.529 40.000 0.00 0.00 29.57 4.85
4349 6219 8.775527 TGCGACTTACTTTACATAAATTTCACA 58.224 29.630 0.00 0.00 0.00 3.58
4588 6458 0.474184 CACCTGGTTCTGACCCTGTT 59.526 55.000 0.00 0.00 45.92 3.16
4817 6687 1.139654 CCCAGACGGTGATCATGATGT 59.860 52.381 14.30 4.34 0.00 3.06
4853 6723 0.036875 AACCTGCTCTCTTTTCCGGG 59.963 55.000 0.00 0.00 0.00 5.73
4918 6788 5.483811 TGTTCACCGAAGCAAATACATAGA 58.516 37.500 0.00 0.00 0.00 1.98
5224 7096 3.227614 TCTGTTGTCACTACCTGCTACA 58.772 45.455 0.00 0.00 0.00 2.74
5225 7097 3.832490 TCTGTTGTCACTACCTGCTACAT 59.168 43.478 0.00 0.00 0.00 2.29
5227 7099 5.479027 TCTGTTGTCACTACCTGCTACATTA 59.521 40.000 0.00 0.00 0.00 1.90
5274 7158 1.321805 TACCCAATGCATGTGCCTGC 61.322 55.000 0.00 0.00 42.62 4.85
5281 7165 3.497103 ATGCATGTGCCTGCTAGATTA 57.503 42.857 0.00 0.00 42.75 1.75
5357 7241 3.006217 GGTTACCACGAAACAGTCTAGGT 59.994 47.826 0.00 0.00 35.78 3.08
5370 7254 4.169508 CAGTCTAGGTCTTGAACATGTCG 58.830 47.826 0.00 0.00 0.00 4.35
5372 7256 3.056749 GTCTAGGTCTTGAACATGTCGGT 60.057 47.826 0.00 0.00 0.00 4.69
5374 7258 0.517316 GGTCTTGAACATGTCGGTGC 59.483 55.000 0.00 0.00 0.00 5.01
5423 7307 0.105224 TTCACTCGAAGGCAACGGAA 59.895 50.000 3.84 0.00 46.39 4.30
5426 7310 1.292223 CTCGAAGGCAACGGAAGGA 59.708 57.895 3.84 0.00 46.39 3.36
5520 7407 0.329596 AATCCCAAGTGGCCAGTCTC 59.670 55.000 15.03 0.00 0.00 3.36
5648 7535 1.302832 CCAGAAAGCTGCCCGTCTT 60.303 57.895 0.00 0.00 40.91 3.01
5649 7536 1.301677 CCAGAAAGCTGCCCGTCTTC 61.302 60.000 0.00 0.00 40.91 2.87
5650 7537 0.603707 CAGAAAGCTGCCCGTCTTCA 60.604 55.000 0.00 0.00 34.95 3.02
5651 7538 0.108585 AGAAAGCTGCCCGTCTTCAA 59.891 50.000 0.00 0.00 0.00 2.69
5659 7546 3.334691 CTGCCCGTCTTCAATCAAAGTA 58.665 45.455 0.00 0.00 0.00 2.24
5668 7555 7.308589 CCGTCTTCAATCAAAGTACCAAAATCT 60.309 37.037 0.00 0.00 0.00 2.40
5685 7572 6.540995 CAAAATCTGGATCCATCTCCTGTAT 58.459 40.000 16.63 0.00 36.10 2.29
5714 7601 7.295322 TCAGGTAATTACTGATGATCCTCTG 57.705 40.000 15.05 9.49 39.87 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 0.247736 CCTTCGTCTTCTGGGGTCTG 59.752 60.000 0.00 0.00 0.00 3.51
75 76 1.678269 CGCTTCGCCTTCGTCTTCTG 61.678 60.000 0.00 0.00 36.96 3.02
76 77 1.444553 CGCTTCGCCTTCGTCTTCT 60.445 57.895 0.00 0.00 36.96 2.85
100 101 1.002624 GTGTTGCGGGGATGAGGAA 60.003 57.895 0.00 0.00 0.00 3.36
148 183 3.775654 CTCTCCGGTGAGGTGGGC 61.776 72.222 23.12 0.00 41.99 5.36
149 184 3.077556 CCTCTCCGGTGAGGTGGG 61.078 72.222 34.75 17.46 46.33 4.61
154 189 1.112315 CCATCCTCCTCTCCGGTGAG 61.112 65.000 23.74 23.74 40.17 3.51
155 190 1.075970 CCATCCTCCTCTCCGGTGA 60.076 63.158 6.00 6.00 0.00 4.02
156 191 0.106167 TACCATCCTCCTCTCCGGTG 60.106 60.000 0.00 0.00 0.00 4.94
157 192 0.186386 CTACCATCCTCCTCTCCGGT 59.814 60.000 0.00 0.00 0.00 5.28
158 193 1.182385 GCTACCATCCTCCTCTCCGG 61.182 65.000 0.00 0.00 0.00 5.14
159 194 1.519751 CGCTACCATCCTCCTCTCCG 61.520 65.000 0.00 0.00 0.00 4.63
160 195 0.178987 TCGCTACCATCCTCCTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
161 196 1.243902 CTCGCTACCATCCTCCTCTC 58.756 60.000 0.00 0.00 0.00 3.20
235 270 1.221466 CCATTGTGTGCAGTCGACGT 61.221 55.000 10.46 0.00 0.00 4.34
243 278 2.916703 GTGGGCCCATTGTGTGCA 60.917 61.111 31.45 0.00 0.00 4.57
358 395 2.771089 GCAGTGATCTCCTGTCAAACA 58.229 47.619 12.56 0.00 32.41 2.83
359 396 1.728971 CGCAGTGATCTCCTGTCAAAC 59.271 52.381 12.56 0.00 32.41 2.93
374 411 1.206132 TCACCGTTGGATATTCGCAGT 59.794 47.619 0.00 0.00 0.00 4.40
376 413 2.613026 ATCACCGTTGGATATTCGCA 57.387 45.000 0.00 0.00 0.00 5.10
429 481 5.581126 AAGAGAGTTTTGCAACATCAACA 57.419 34.783 12.85 0.00 35.05 3.33
545 600 6.685527 TTTGCAACAGCGGTATCATTATAA 57.314 33.333 0.00 0.00 0.00 0.98
592 649 1.070643 GGCTTGAACGTTTGCAATTGC 60.071 47.619 23.69 23.69 42.50 3.56
603 660 1.133025 GGATGATGTTGGGCTTGAACG 59.867 52.381 0.00 0.00 0.00 3.95
606 663 2.291735 ACATGGATGATGTTGGGCTTGA 60.292 45.455 0.00 0.00 43.20 3.02
691 748 3.010696 GGGGAGGTCCTTTTGAAAGATCT 59.989 47.826 5.09 0.00 38.28 2.75
699 756 5.816955 TTTATTTTGGGGAGGTCCTTTTG 57.183 39.130 0.00 0.00 35.95 2.44
707 764 7.912719 TGTTTTATCCTTTTATTTTGGGGAGG 58.087 34.615 0.00 0.00 0.00 4.30
725 782 9.930158 TCCCCTGTATTTATTTAGCTGTTTTAT 57.070 29.630 0.00 0.00 0.00 1.40
767 824 6.190954 AGGAAATCCTTCGAAATTTTACGG 57.809 37.500 8.75 0.83 46.09 4.02
964 1058 1.863880 CGACTGCGTGCTCTCGTAC 60.864 63.158 0.00 0.00 0.00 3.67
1429 1527 2.457598 AGGACCTAGAGCGAATCACAA 58.542 47.619 0.00 0.00 0.00 3.33
1431 1529 2.554893 CCTAGGACCTAGAGCGAATCAC 59.445 54.545 27.39 0.00 36.26 3.06
1527 1625 4.473520 CAGGTGCGCAGGTAGGGG 62.474 72.222 12.22 0.00 0.00 4.79
1566 1664 4.101741 AGAATAACCACTGCTAGCCTAAGG 59.898 45.833 13.29 11.35 0.00 2.69
1567 1665 5.163405 TGAGAATAACCACTGCTAGCCTAAG 60.163 44.000 13.29 5.57 0.00 2.18
1579 1677 4.600062 AGGGGAAACATGAGAATAACCAC 58.400 43.478 0.00 0.00 0.00 4.16
1585 1683 3.593328 TCAAGGAGGGGAAACATGAGAAT 59.407 43.478 0.00 0.00 0.00 2.40
1590 1688 2.996631 CTCTCAAGGAGGGGAAACATG 58.003 52.381 0.00 0.00 38.35 3.21
1626 1724 4.216042 CCTGTGTGTGCATCACTTCATAAA 59.784 41.667 20.09 3.80 46.27 1.40
1631 1729 0.877071 CCCTGTGTGTGCATCACTTC 59.123 55.000 20.09 13.35 46.27 3.01
1652 1750 3.064545 GCACTCAACATAGTGGAAGCATC 59.935 47.826 6.17 0.00 45.75 3.91
1715 1820 8.602472 ATGGAAACCCATTAGTAAATAGCAAA 57.398 30.769 0.00 0.00 41.51 3.68
1733 1838 5.390991 GCTTACTCAGTGTGCTAATGGAAAC 60.391 44.000 0.00 0.00 0.00 2.78
1784 1889 2.298163 CCACTTTGCAAGCTCAATCCTT 59.702 45.455 0.00 0.00 0.00 3.36
1814 1919 3.940852 TGTAAGGCTACAATGCATCTGTG 59.059 43.478 18.73 9.39 35.03 3.66
1849 1954 7.609918 TCGGAAATGAAATCTTGACAAGGATTA 59.390 33.333 15.13 0.00 32.65 1.75
1864 1969 3.683822 GGCAATTGCAATCGGAAATGAAA 59.316 39.130 30.32 0.00 44.36 2.69
1879 1984 2.102070 ACATTGTGGCATGGCAATTG 57.898 45.000 25.11 21.60 33.55 2.32
1885 1990 3.205338 TCGAATCTACATTGTGGCATGG 58.795 45.455 0.00 0.00 0.00 3.66
1910 2015 3.814504 AACTGTGTGGGATGAGGAATT 57.185 42.857 0.00 0.00 0.00 2.17
1975 2083 2.500442 CTAGCTTCACGACTGCGCG 61.500 63.158 0.00 0.00 42.48 6.86
1976 2084 1.009389 AACTAGCTTCACGACTGCGC 61.009 55.000 0.00 0.00 42.48 6.09
1981 2089 5.799435 GGAGTAGTAAAACTAGCTTCACGAC 59.201 44.000 0.00 0.00 30.12 4.34
1982 2090 5.105997 GGGAGTAGTAAAACTAGCTTCACGA 60.106 44.000 0.00 0.00 30.12 4.35
1983 2091 5.100943 GGGAGTAGTAAAACTAGCTTCACG 58.899 45.833 0.00 0.00 30.12 4.35
1985 2093 6.153000 CAGAGGGAGTAGTAAAACTAGCTTCA 59.847 42.308 0.00 0.00 30.12 3.02
1987 2095 6.254522 TCAGAGGGAGTAGTAAAACTAGCTT 58.745 40.000 0.00 0.00 30.12 3.74
2009 2117 7.984422 AATCAGCGACAATTAATATGGATCA 57.016 32.000 0.00 0.00 0.00 2.92
2023 2131 6.795098 AATTGTTGTACTAAATCAGCGACA 57.205 33.333 0.00 0.00 0.00 4.35
2032 2140 9.537192 CCGATCCATAGTAATTGTTGTACTAAA 57.463 33.333 0.00 0.00 37.54 1.85
2034 2142 8.467963 TCCGATCCATAGTAATTGTTGTACTA 57.532 34.615 0.00 0.00 38.19 1.82
2035 2143 7.356089 TCCGATCCATAGTAATTGTTGTACT 57.644 36.000 0.00 0.00 35.90 2.73
2036 2144 6.645415 CCTCCGATCCATAGTAATTGTTGTAC 59.355 42.308 0.00 0.00 0.00 2.90
2038 2146 5.454755 CCCTCCGATCCATAGTAATTGTTGT 60.455 44.000 0.00 0.00 0.00 3.32
2039 2147 4.997395 CCCTCCGATCCATAGTAATTGTTG 59.003 45.833 0.00 0.00 0.00 3.33
2040 2148 4.041691 CCCCTCCGATCCATAGTAATTGTT 59.958 45.833 0.00 0.00 0.00 2.83
2048 2187 2.320681 TTACCCCCTCCGATCCATAG 57.679 55.000 0.00 0.00 0.00 2.23
2080 2219 3.119495 ACTGTGGCAAACTCAAACACTTC 60.119 43.478 0.00 0.00 33.44 3.01
2148 2291 8.920509 AAAACACACTGTATGAAACTAAAACC 57.079 30.769 0.00 0.00 0.00 3.27
2153 2296 8.725405 TCAGAAAAACACACTGTATGAAACTA 57.275 30.769 0.00 0.00 33.93 2.24
2207 2351 1.073923 GGGGGAACAGAAAGAGCAGAA 59.926 52.381 0.00 0.00 0.00 3.02
2230 2374 5.030820 AGGTAAGGAACTAGCATACCAACT 58.969 41.667 10.69 0.00 38.49 3.16
2237 2381 7.021998 AGAAAAGAAGGTAAGGAACTAGCAT 57.978 36.000 0.00 0.00 38.49 3.79
2300 2495 6.402983 CCATTTCTCAACTCAATCGAAGAAGG 60.403 42.308 0.00 0.00 43.58 3.46
2307 2502 3.609853 TCCCCATTTCTCAACTCAATCG 58.390 45.455 0.00 0.00 0.00 3.34
2317 2512 5.104318 AGGTCTCTAAACATCCCCATTTCTC 60.104 44.000 0.00 0.00 0.00 2.87
2325 2520 5.632034 AATGGTAGGTCTCTAAACATCCC 57.368 43.478 0.00 0.00 30.17 3.85
2385 2580 9.320352 TCATTCTCGGAAAATATGAATTCGTAA 57.680 29.630 11.33 0.00 0.00 3.18
2403 2598 1.126846 GAGCGTTGGTGTTCATTCTCG 59.873 52.381 0.00 0.00 0.00 4.04
2434 2629 1.880027 CTTGGCTGAAGTTGTACACCC 59.120 52.381 0.00 0.00 0.00 4.61
2485 2681 6.864421 TCTAATAAAGGCTAGAGGATGAGGA 58.136 40.000 0.00 0.00 0.00 3.71
2505 2701 9.817809 CTAGCAGATACAAACTTAACCATCTAA 57.182 33.333 0.00 0.00 0.00 2.10
2506 2702 8.978472 ACTAGCAGATACAAACTTAACCATCTA 58.022 33.333 0.00 0.00 0.00 1.98
2507 2703 7.852263 ACTAGCAGATACAAACTTAACCATCT 58.148 34.615 0.00 0.00 0.00 2.90
2508 2704 8.494016 AACTAGCAGATACAAACTTAACCATC 57.506 34.615 0.00 0.00 0.00 3.51
2509 2705 8.863872 AAACTAGCAGATACAAACTTAACCAT 57.136 30.769 0.00 0.00 0.00 3.55
2510 2706 8.564574 CAAAACTAGCAGATACAAACTTAACCA 58.435 33.333 0.00 0.00 0.00 3.67
2511 2707 7.537649 GCAAAACTAGCAGATACAAACTTAACC 59.462 37.037 0.00 0.00 0.00 2.85
2512 2708 8.290325 AGCAAAACTAGCAGATACAAACTTAAC 58.710 33.333 0.00 0.00 0.00 2.01
2513 2709 8.289618 CAGCAAAACTAGCAGATACAAACTTAA 58.710 33.333 0.00 0.00 0.00 1.85
2515 2711 6.263168 ACAGCAAAACTAGCAGATACAAACTT 59.737 34.615 0.00 0.00 0.00 2.66
2516 2712 5.765182 ACAGCAAAACTAGCAGATACAAACT 59.235 36.000 0.00 0.00 0.00 2.66
2536 2983 1.639280 CACACAACCCAAACAACAGC 58.361 50.000 0.00 0.00 0.00 4.40
2539 2986 1.470805 GGAGCACACAACCCAAACAAC 60.471 52.381 0.00 0.00 0.00 3.32
2569 3016 3.440415 GCCTAGCCGCGCCTTTTT 61.440 61.111 0.00 0.00 0.00 1.94
2570 3017 4.410400 AGCCTAGCCGCGCCTTTT 62.410 61.111 0.00 0.00 0.00 2.27
2571 3018 4.840005 GAGCCTAGCCGCGCCTTT 62.840 66.667 0.00 0.00 0.00 3.11
2573 3020 4.896829 TAGAGCCTAGCCGCGCCT 62.897 66.667 0.00 0.00 0.00 5.52
2574 3021 4.350441 CTAGAGCCTAGCCGCGCC 62.350 72.222 0.00 0.00 0.00 6.53
2575 3022 4.350441 CCTAGAGCCTAGCCGCGC 62.350 72.222 0.00 0.00 0.00 6.86
2576 3023 4.350441 GCCTAGAGCCTAGCCGCG 62.350 72.222 0.00 0.00 34.35 6.46
2577 3024 4.350441 CGCCTAGAGCCTAGCCGC 62.350 72.222 0.00 3.30 38.78 6.53
2578 3025 0.677098 TATCGCCTAGAGCCTAGCCG 60.677 60.000 6.35 6.35 38.78 5.52
2579 3026 1.099689 CTATCGCCTAGAGCCTAGCC 58.900 60.000 0.00 0.00 38.78 3.93
2580 3027 0.454196 GCTATCGCCTAGAGCCTAGC 59.546 60.000 12.44 12.44 40.20 3.42
2581 3028 1.827681 TGCTATCGCCTAGAGCCTAG 58.172 55.000 0.00 3.06 41.98 3.02
2582 3029 2.287977 TTGCTATCGCCTAGAGCCTA 57.712 50.000 0.00 0.00 41.98 3.93
2583 3030 1.414158 TTTGCTATCGCCTAGAGCCT 58.586 50.000 0.00 0.00 41.98 4.58
2584 3031 1.867865 GTTTTGCTATCGCCTAGAGCC 59.132 52.381 0.00 0.00 41.98 4.70
2585 3032 1.523095 CGTTTTGCTATCGCCTAGAGC 59.477 52.381 0.00 0.00 43.02 4.09
2586 3033 1.523095 GCGTTTTGCTATCGCCTAGAG 59.477 52.381 0.00 0.00 43.41 2.43
2587 3034 1.567504 GCGTTTTGCTATCGCCTAGA 58.432 50.000 0.00 0.00 43.41 2.43
2593 3040 1.004927 GCACTAGGCGTTTTGCTATCG 60.005 52.381 0.00 0.00 45.43 2.92
2594 3041 2.739293 GCACTAGGCGTTTTGCTATC 57.261 50.000 0.00 0.00 45.43 2.08
2605 3052 0.946221 AGCGCGATTATGCACTAGGC 60.946 55.000 12.10 0.00 45.13 3.93
2606 3053 1.502231 AAGCGCGATTATGCACTAGG 58.498 50.000 8.35 0.00 34.15 3.02
2607 3054 4.623167 AGATTAAGCGCGATTATGCACTAG 59.377 41.667 18.48 0.00 34.15 2.57
2608 3055 4.385748 CAGATTAAGCGCGATTATGCACTA 59.614 41.667 18.48 1.66 34.15 2.74
2609 3056 3.185188 CAGATTAAGCGCGATTATGCACT 59.815 43.478 18.48 11.44 34.15 4.40
2610 3057 3.473367 CAGATTAAGCGCGATTATGCAC 58.527 45.455 18.48 9.47 34.15 4.57
2611 3058 2.096268 GCAGATTAAGCGCGATTATGCA 60.096 45.455 27.00 11.90 34.15 3.96
2612 3059 2.499896 GCAGATTAAGCGCGATTATGC 58.500 47.619 20.90 20.90 0.00 3.14
2622 3069 3.231965 CATGCTTATGCGCAGATTAAGC 58.768 45.455 32.49 32.49 44.32 3.09
2623 3070 3.231965 GCATGCTTATGCGCAGATTAAG 58.768 45.455 18.32 19.39 44.10 1.85
2624 3071 3.272439 GCATGCTTATGCGCAGATTAA 57.728 42.857 18.32 9.09 44.10 1.40
2625 3072 2.975410 GCATGCTTATGCGCAGATTA 57.025 45.000 18.32 0.00 44.10 1.75
2626 3073 3.859650 GCATGCTTATGCGCAGATT 57.140 47.368 18.32 0.56 44.10 2.40
2639 3086 0.039256 TTTCTGACCAAAGCGCATGC 60.039 50.000 11.47 7.91 43.24 4.06
2640 3087 2.322161 CTTTTCTGACCAAAGCGCATG 58.678 47.619 11.47 8.38 0.00 4.06
2641 3088 1.336240 GCTTTTCTGACCAAAGCGCAT 60.336 47.619 11.47 0.00 44.94 4.73
2642 3089 0.030638 GCTTTTCTGACCAAAGCGCA 59.969 50.000 11.47 0.00 44.94 6.09
2643 3090 2.801388 GCTTTTCTGACCAAAGCGC 58.199 52.632 10.15 0.00 44.94 5.92
2646 3093 2.388121 CTTGCGCTTTTCTGACCAAAG 58.612 47.619 9.73 0.00 34.80 2.77
2647 3094 1.066908 CCTTGCGCTTTTCTGACCAAA 59.933 47.619 9.73 0.00 0.00 3.28
2648 3095 0.667993 CCTTGCGCTTTTCTGACCAA 59.332 50.000 9.73 0.00 0.00 3.67
2649 3096 0.179032 TCCTTGCGCTTTTCTGACCA 60.179 50.000 9.73 0.00 0.00 4.02
2650 3097 0.519077 CTCCTTGCGCTTTTCTGACC 59.481 55.000 9.73 0.00 0.00 4.02
2651 3098 0.519077 CCTCCTTGCGCTTTTCTGAC 59.481 55.000 9.73 0.00 0.00 3.51
2652 3099 0.108585 ACCTCCTTGCGCTTTTCTGA 59.891 50.000 9.73 0.00 0.00 3.27
2653 3100 0.239347 CACCTCCTTGCGCTTTTCTG 59.761 55.000 9.73 0.00 0.00 3.02
2654 3101 0.890996 CCACCTCCTTGCGCTTTTCT 60.891 55.000 9.73 0.00 0.00 2.52
2655 3102 1.581447 CCACCTCCTTGCGCTTTTC 59.419 57.895 9.73 0.00 0.00 2.29
2656 3103 2.564721 GCCACCTCCTTGCGCTTTT 61.565 57.895 9.73 0.00 0.00 2.27
2657 3104 2.985847 GCCACCTCCTTGCGCTTT 60.986 61.111 9.73 0.00 0.00 3.51
2658 3105 3.790416 TTGCCACCTCCTTGCGCTT 62.790 57.895 9.73 0.00 0.00 4.68
2659 3106 3.790416 TTTGCCACCTCCTTGCGCT 62.790 57.895 9.73 0.00 0.00 5.92
2660 3107 3.294493 TTTGCCACCTCCTTGCGC 61.294 61.111 0.00 0.00 0.00 6.09
2661 3108 2.644992 GTTTGCCACCTCCTTGCG 59.355 61.111 0.00 0.00 0.00 4.85
2662 3109 2.644992 CGTTTGCCACCTCCTTGC 59.355 61.111 0.00 0.00 0.00 4.01
2663 3110 2.644992 GCGTTTGCCACCTCCTTG 59.355 61.111 0.00 0.00 33.98 3.61
2664 3111 2.978010 CGCGTTTGCCACCTCCTT 60.978 61.111 0.00 0.00 38.08 3.36
2667 3114 2.747507 AATTGCGCGTTTGCCACCTC 62.748 55.000 8.43 0.00 38.08 3.85
2668 3115 1.519751 TAATTGCGCGTTTGCCACCT 61.520 50.000 8.43 0.00 38.08 4.00
2669 3116 0.664767 TTAATTGCGCGTTTGCCACC 60.665 50.000 8.43 0.00 38.08 4.61
2670 3117 0.433115 GTTAATTGCGCGTTTGCCAC 59.567 50.000 8.43 0.00 38.08 5.01
2671 3118 0.999228 CGTTAATTGCGCGTTTGCCA 60.999 50.000 8.43 0.00 38.08 4.92
2672 3119 1.693844 CGTTAATTGCGCGTTTGCC 59.306 52.632 8.43 0.00 38.08 4.52
2673 3120 1.055085 GCGTTAATTGCGCGTTTGC 59.945 52.632 8.43 2.36 45.36 3.68
2700 3147 3.886505 ACCGAGCAACCATAGTTCAAAAA 59.113 39.130 0.00 0.00 32.45 1.94
2701 3148 3.482436 ACCGAGCAACCATAGTTCAAAA 58.518 40.909 0.00 0.00 32.45 2.44
2702 3149 3.071479 GACCGAGCAACCATAGTTCAAA 58.929 45.455 0.00 0.00 32.45 2.69
2703 3150 2.037902 TGACCGAGCAACCATAGTTCAA 59.962 45.455 0.00 0.00 32.45 2.69
2704 3151 1.621317 TGACCGAGCAACCATAGTTCA 59.379 47.619 0.00 0.00 32.45 3.18
2705 3152 2.000447 GTGACCGAGCAACCATAGTTC 59.000 52.381 0.00 0.00 32.45 3.01
2706 3153 1.338769 GGTGACCGAGCAACCATAGTT 60.339 52.381 0.00 0.00 36.33 2.24
2707 3154 0.249398 GGTGACCGAGCAACCATAGT 59.751 55.000 0.00 0.00 0.00 2.12
2708 3155 0.537188 AGGTGACCGAGCAACCATAG 59.463 55.000 0.00 0.00 0.00 2.23
2709 3156 0.535335 GAGGTGACCGAGCAACCATA 59.465 55.000 0.00 0.00 0.00 2.74
2710 3157 1.194781 AGAGGTGACCGAGCAACCAT 61.195 55.000 0.00 0.00 0.00 3.55
2711 3158 1.816863 GAGAGGTGACCGAGCAACCA 61.817 60.000 0.00 0.00 0.00 3.67
2712 3159 1.079750 GAGAGGTGACCGAGCAACC 60.080 63.158 0.00 0.00 0.00 3.77
2713 3160 1.079750 GGAGAGGTGACCGAGCAAC 60.080 63.158 0.00 0.00 0.00 4.17
2714 3161 2.283529 GGGAGAGGTGACCGAGCAA 61.284 63.158 0.00 0.00 0.00 3.91
2730 3177 2.854300 AAATAACGGCCAGGCAGGGG 62.854 60.000 16.74 3.06 38.09 4.79
2733 3180 1.714899 CGGAAATAACGGCCAGGCAG 61.715 60.000 15.19 12.77 0.00 4.85
2736 3183 3.821995 CCGGAAATAACGGCCAGG 58.178 61.111 2.24 0.00 45.34 4.45
2742 3189 2.014128 ACATTGAGCCCGGAAATAACG 58.986 47.619 0.73 0.00 0.00 3.18
2743 3190 3.279434 AGACATTGAGCCCGGAAATAAC 58.721 45.455 0.73 0.00 0.00 1.89
2744 3191 3.644966 AGACATTGAGCCCGGAAATAA 57.355 42.857 0.73 0.00 0.00 1.40
2749 3196 2.421388 CCATTAAGACATTGAGCCCGGA 60.421 50.000 0.73 0.00 0.00 5.14
2751 3198 2.917933 TCCATTAAGACATTGAGCCCG 58.082 47.619 0.00 0.00 0.00 6.13
2766 3232 3.387699 CCCACCTGAACTGTTTTTCCATT 59.612 43.478 0.00 0.00 0.00 3.16
2802 3268 0.930726 TTTGAAAGGTCAGGTGGGGT 59.069 50.000 0.00 0.00 34.49 4.95
2823 3289 2.297701 ACAACGCAGATTCACACCTTT 58.702 42.857 0.00 0.00 0.00 3.11
2838 3379 5.783654 CGACAGCTCAATAGTTTAAACAACG 59.216 40.000 20.06 6.01 0.00 4.10
2884 3425 4.099266 TCCATATGTTAAGCATTGCAACCC 59.901 41.667 11.91 0.00 38.94 4.11
2886 3427 6.135290 TCTCCATATGTTAAGCATTGCAAC 57.865 37.500 11.91 8.07 38.94 4.17
2899 3440 3.815401 GGTTAAAGCGCATCTCCATATGT 59.185 43.478 11.47 0.00 0.00 2.29
2948 3595 4.213482 ACTTCTCATTCGTGCCTTTTGTAC 59.787 41.667 0.00 0.00 0.00 2.90
2957 3604 3.248602 ACTTGTTGACTTCTCATTCGTGC 59.751 43.478 0.00 0.00 0.00 5.34
3032 3690 4.470602 AGCATATTTAGTAAGGTTGGGCC 58.529 43.478 0.00 0.00 37.58 5.80
3051 3709 6.549736 TCCTAATGCTACACAGAATACTAGCA 59.450 38.462 0.96 0.96 43.42 3.49
3078 3736 2.481185 CCAATGCAAACATGGCTTGAAC 59.519 45.455 12.56 0.00 36.36 3.18
3120 3778 9.931698 TCTTAGGAAAGGTCTATTCTACACATA 57.068 33.333 0.00 0.00 33.22 2.29
3260 3919 3.004629 GCACATGTTGAATTCCAGTCACA 59.995 43.478 2.27 0.00 0.00 3.58
3291 3950 1.407618 CAATGAGTATCGGTGGTCGGA 59.592 52.381 0.00 0.00 38.61 4.55
3301 3960 5.755813 CAGCTGTTAATGCCAATGAGTATC 58.244 41.667 5.25 0.00 0.00 2.24
3478 4141 3.561429 GTGGAGACGATTGCGCAA 58.439 55.556 27.24 27.24 42.48 4.85
3548 4211 1.145945 TCCCACCATTGCTACAACCAA 59.854 47.619 0.00 0.00 0.00 3.67
3551 4214 1.818674 CCTTCCCACCATTGCTACAAC 59.181 52.381 0.00 0.00 0.00 3.32
3614 5232 4.018779 TCATTCACCGGTCTTTATCCCTTT 60.019 41.667 2.59 0.00 0.00 3.11
3629 5247 3.264450 TCTTCCCCTTCTTCTCATTCACC 59.736 47.826 0.00 0.00 0.00 4.02
3646 5264 1.301293 CTCCCCACAGCCTTCTTCC 59.699 63.158 0.00 0.00 0.00 3.46
3647 5265 1.377856 GCTCCCCACAGCCTTCTTC 60.378 63.158 0.00 0.00 32.76 2.87
3651 5269 1.927527 ATCTGCTCCCCACAGCCTT 60.928 57.895 0.00 0.00 38.80 4.35
3652 5270 2.285969 ATCTGCTCCCCACAGCCT 60.286 61.111 0.00 0.00 38.80 4.58
3653 5271 2.124403 CATCTGCTCCCCACAGCC 60.124 66.667 0.00 0.00 38.80 4.85
3654 5272 1.748122 CACATCTGCTCCCCACAGC 60.748 63.158 0.00 0.00 40.13 4.40
3655 5273 1.077930 CCACATCTGCTCCCCACAG 60.078 63.158 0.00 0.00 36.44 3.66
3656 5274 1.133181 TTCCACATCTGCTCCCCACA 61.133 55.000 0.00 0.00 0.00 4.17
3657 5275 0.678048 GTTCCACATCTGCTCCCCAC 60.678 60.000 0.00 0.00 0.00 4.61
3658 5276 1.133181 TGTTCCACATCTGCTCCCCA 61.133 55.000 0.00 0.00 0.00 4.96
3659 5277 0.393537 CTGTTCCACATCTGCTCCCC 60.394 60.000 0.00 0.00 0.00 4.81
3660 5278 0.326264 ACTGTTCCACATCTGCTCCC 59.674 55.000 0.00 0.00 0.00 4.30
3661 5279 1.446907 CACTGTTCCACATCTGCTCC 58.553 55.000 0.00 0.00 0.00 4.70
3662 5280 1.002430 TCCACTGTTCCACATCTGCTC 59.998 52.381 0.00 0.00 0.00 4.26
3663 5281 1.059098 TCCACTGTTCCACATCTGCT 58.941 50.000 0.00 0.00 0.00 4.24
3664 5282 1.808945 CTTCCACTGTTCCACATCTGC 59.191 52.381 0.00 0.00 0.00 4.26
3665 5283 3.332919 CTCTTCCACTGTTCCACATCTG 58.667 50.000 0.00 0.00 0.00 2.90
3666 5284 2.304180 CCTCTTCCACTGTTCCACATCT 59.696 50.000 0.00 0.00 0.00 2.90
3667 5285 2.616510 CCCTCTTCCACTGTTCCACATC 60.617 54.545 0.00 0.00 0.00 3.06
3668 5286 1.352352 CCCTCTTCCACTGTTCCACAT 59.648 52.381 0.00 0.00 0.00 3.21
3669 5287 0.764890 CCCTCTTCCACTGTTCCACA 59.235 55.000 0.00 0.00 0.00 4.17
3670 5288 0.765510 ACCCTCTTCCACTGTTCCAC 59.234 55.000 0.00 0.00 0.00 4.02
3671 5289 1.518367 AACCCTCTTCCACTGTTCCA 58.482 50.000 0.00 0.00 0.00 3.53
3672 5290 3.610911 CATAACCCTCTTCCACTGTTCC 58.389 50.000 0.00 0.00 0.00 3.62
3673 5291 3.010420 GCATAACCCTCTTCCACTGTTC 58.990 50.000 0.00 0.00 0.00 3.18
3674 5292 2.290960 GGCATAACCCTCTTCCACTGTT 60.291 50.000 0.00 0.00 0.00 3.16
3675 5293 1.282157 GGCATAACCCTCTTCCACTGT 59.718 52.381 0.00 0.00 0.00 3.55
3676 5294 1.281867 TGGCATAACCCTCTTCCACTG 59.718 52.381 0.00 0.00 37.83 3.66
3677 5295 1.561542 CTGGCATAACCCTCTTCCACT 59.438 52.381 0.00 0.00 37.83 4.00
3678 5296 1.408822 CCTGGCATAACCCTCTTCCAC 60.409 57.143 0.00 0.00 37.83 4.02
3679 5297 0.918983 CCTGGCATAACCCTCTTCCA 59.081 55.000 0.00 0.00 37.83 3.53
3680 5298 0.183731 CCCTGGCATAACCCTCTTCC 59.816 60.000 0.00 0.00 37.83 3.46
3681 5299 0.183731 CCCCTGGCATAACCCTCTTC 59.816 60.000 0.00 0.00 37.83 2.87
3682 5300 1.289244 CCCCCTGGCATAACCCTCTT 61.289 60.000 0.00 0.00 37.83 2.85
3683 5301 1.697754 CCCCCTGGCATAACCCTCT 60.698 63.158 0.00 0.00 37.83 3.69
3684 5302 1.286305 TTCCCCCTGGCATAACCCTC 61.286 60.000 0.00 0.00 37.83 4.30
3685 5303 0.853586 TTTCCCCCTGGCATAACCCT 60.854 55.000 0.00 0.00 37.83 4.34
3686 5304 0.041982 TTTTCCCCCTGGCATAACCC 59.958 55.000 0.00 0.00 37.83 4.11
3687 5305 1.762370 CATTTTCCCCCTGGCATAACC 59.238 52.381 0.00 0.00 39.84 2.85
3688 5306 1.762370 CCATTTTCCCCCTGGCATAAC 59.238 52.381 0.00 0.00 0.00 1.89
3689 5307 1.364328 ACCATTTTCCCCCTGGCATAA 59.636 47.619 0.00 0.00 33.12 1.90
3690 5308 1.014804 ACCATTTTCCCCCTGGCATA 58.985 50.000 0.00 0.00 33.12 3.14
3691 5309 0.618393 CACCATTTTCCCCCTGGCAT 60.618 55.000 0.00 0.00 33.12 4.40
3692 5310 1.229145 CACCATTTTCCCCCTGGCA 60.229 57.895 0.00 0.00 33.12 4.92
3693 5311 0.544120 TTCACCATTTTCCCCCTGGC 60.544 55.000 0.00 0.00 33.12 4.85
3694 5312 2.022718 TTTCACCATTTTCCCCCTGG 57.977 50.000 0.00 0.00 36.09 4.45
3695 5313 3.444029 AGATTTCACCATTTTCCCCCTG 58.556 45.455 0.00 0.00 0.00 4.45
3696 5314 3.852858 AGATTTCACCATTTTCCCCCT 57.147 42.857 0.00 0.00 0.00 4.79
3697 5315 5.684813 GCAATAGATTTCACCATTTTCCCCC 60.685 44.000 0.00 0.00 0.00 5.40
3698 5316 5.104982 TGCAATAGATTTCACCATTTTCCCC 60.105 40.000 0.00 0.00 0.00 4.81
3699 5317 5.976458 TGCAATAGATTTCACCATTTTCCC 58.024 37.500 0.00 0.00 0.00 3.97
3700 5318 8.392612 CAATTGCAATAGATTTCACCATTTTCC 58.607 33.333 13.39 0.00 0.00 3.13
3701 5319 9.153721 TCAATTGCAATAGATTTCACCATTTTC 57.846 29.630 13.39 0.00 0.00 2.29
3702 5320 9.158233 CTCAATTGCAATAGATTTCACCATTTT 57.842 29.630 13.39 0.00 0.00 1.82
3703 5321 8.316214 ACTCAATTGCAATAGATTTCACCATTT 58.684 29.630 13.39 0.00 0.00 2.32
3704 5322 7.844009 ACTCAATTGCAATAGATTTCACCATT 58.156 30.769 13.39 0.00 0.00 3.16
3705 5323 7.414222 ACTCAATTGCAATAGATTTCACCAT 57.586 32.000 13.39 0.00 0.00 3.55
3706 5324 6.839124 ACTCAATTGCAATAGATTTCACCA 57.161 33.333 13.39 0.00 0.00 4.17
3707 5325 7.912250 CACTACTCAATTGCAATAGATTTCACC 59.088 37.037 13.39 0.00 0.00 4.02
3708 5326 7.912250 CCACTACTCAATTGCAATAGATTTCAC 59.088 37.037 13.39 0.00 0.00 3.18
3709 5327 7.828717 TCCACTACTCAATTGCAATAGATTTCA 59.171 33.333 13.39 0.00 0.00 2.69
3710 5328 8.213518 TCCACTACTCAATTGCAATAGATTTC 57.786 34.615 13.39 0.00 0.00 2.17
3711 5329 7.284034 CCTCCACTACTCAATTGCAATAGATTT 59.716 37.037 13.39 0.00 0.00 2.17
3712 5330 6.769822 CCTCCACTACTCAATTGCAATAGATT 59.230 38.462 13.39 0.00 0.00 2.40
3713 5331 6.100279 TCCTCCACTACTCAATTGCAATAGAT 59.900 38.462 13.39 1.60 0.00 1.98
3714 5332 5.425217 TCCTCCACTACTCAATTGCAATAGA 59.575 40.000 13.39 0.00 0.00 1.98
3715 5333 5.525378 GTCCTCCACTACTCAATTGCAATAG 59.475 44.000 13.39 10.02 0.00 1.73
3716 5334 5.428253 GTCCTCCACTACTCAATTGCAATA 58.572 41.667 13.39 0.00 0.00 1.90
3717 5335 4.265073 GTCCTCCACTACTCAATTGCAAT 58.735 43.478 5.99 5.99 0.00 3.56
3718 5336 3.674997 GTCCTCCACTACTCAATTGCAA 58.325 45.455 0.00 0.00 0.00 4.08
3719 5337 2.353704 CGTCCTCCACTACTCAATTGCA 60.354 50.000 0.00 0.00 0.00 4.08
3720 5338 2.271800 CGTCCTCCACTACTCAATTGC 58.728 52.381 0.00 0.00 0.00 3.56
3721 5339 2.496070 TCCGTCCTCCACTACTCAATTG 59.504 50.000 0.00 0.00 0.00 2.32
3722 5340 2.816411 TCCGTCCTCCACTACTCAATT 58.184 47.619 0.00 0.00 0.00 2.32
3723 5341 2.496470 GTTCCGTCCTCCACTACTCAAT 59.504 50.000 0.00 0.00 0.00 2.57
3724 5342 1.891150 GTTCCGTCCTCCACTACTCAA 59.109 52.381 0.00 0.00 0.00 3.02
3725 5343 1.075050 AGTTCCGTCCTCCACTACTCA 59.925 52.381 0.00 0.00 0.00 3.41
3726 5344 1.836802 AGTTCCGTCCTCCACTACTC 58.163 55.000 0.00 0.00 0.00 2.59
3727 5345 2.308275 ACTAGTTCCGTCCTCCACTACT 59.692 50.000 0.00 0.00 0.00 2.57
3728 5346 2.720915 ACTAGTTCCGTCCTCCACTAC 58.279 52.381 0.00 0.00 0.00 2.73
3729 5347 4.785346 ATACTAGTTCCGTCCTCCACTA 57.215 45.455 0.00 0.00 0.00 2.74
3730 5348 3.666345 ATACTAGTTCCGTCCTCCACT 57.334 47.619 0.00 0.00 0.00 4.00
3731 5349 3.446516 ACAATACTAGTTCCGTCCTCCAC 59.553 47.826 0.00 0.00 0.00 4.02
3749 5605 9.426837 CATTCATGTATCCTTGACAAAAACAAT 57.573 29.630 0.00 0.00 0.00 2.71
3753 5609 8.298854 CACTCATTCATGTATCCTTGACAAAAA 58.701 33.333 0.00 0.00 0.00 1.94
3802 5662 9.847224 GGGAAAATTGATCTTATACCACTAAGA 57.153 33.333 0.00 0.00 40.88 2.10
3846 5711 5.916318 TGCAAACCTCATCAAAATTCACTT 58.084 33.333 0.00 0.00 0.00 3.16
3915 5781 5.299279 CCCACAGAGCTTTTCTTTTAACAGA 59.701 40.000 0.00 0.00 32.41 3.41
3919 5785 3.895041 CCCCCACAGAGCTTTTCTTTTAA 59.105 43.478 0.00 0.00 32.41 1.52
3954 5820 2.625790 ACGTTGCCAATTTGGAAGCTTA 59.374 40.909 19.76 0.00 40.96 3.09
4007 5873 4.546829 ACGCACATTAGAAAGACCCTAA 57.453 40.909 0.00 0.00 0.00 2.69
4083 5949 8.680001 GTTGTAACCTTAGTTTTCCTTTTCTGA 58.320 33.333 0.00 0.00 37.42 3.27
4144 6010 4.363991 AAGAAATATAGCTCCCTGGCAG 57.636 45.455 7.75 7.75 34.17 4.85
4166 6032 3.429547 GGCTTCTTCATCGAGCTAAGACA 60.430 47.826 6.43 0.39 36.66 3.41
4260 6130 3.211865 GGAAATCCGGAATACCAGGAAC 58.788 50.000 9.01 0.00 40.26 3.62
4274 6144 6.136541 CAAGTATAGTTGCTTGGGAAATCC 57.863 41.667 7.36 0.00 40.63 3.01
4349 6219 4.336280 GTTCCTTGGCAGAACTAGGAAAT 58.664 43.478 16.95 0.00 41.23 2.17
4588 6458 1.542472 TCATCAGAGTTCAACGCCGTA 59.458 47.619 0.00 0.00 0.00 4.02
4750 6620 3.760684 GGATTTATCACCAGGATCATGCC 59.239 47.826 0.73 0.00 37.44 4.40
4817 6687 5.887598 AGCAGGTTCTACAAAATATCATGCA 59.112 36.000 0.00 0.00 0.00 3.96
4853 6723 2.531206 CTGCAGTAGAGAAGCGGTAAC 58.469 52.381 5.25 0.00 0.00 2.50
4902 6772 6.978659 TCTAGGTTGTCTATGTATTTGCTTCG 59.021 38.462 0.00 0.00 0.00 3.79
4918 6788 5.189736 TCCAGTTCATAATGCTCTAGGTTGT 59.810 40.000 0.00 0.00 0.00 3.32
5079 6950 6.038382 CCATAGAGTATACGCCGTCTAATGAT 59.962 42.308 0.00 0.00 0.00 2.45
5246 7130 5.106987 GCACATGCATTGGGTAAAAAGAAAG 60.107 40.000 0.00 0.00 41.59 2.62
5257 7141 2.185867 GCAGGCACATGCATTGGG 59.814 61.111 6.15 0.00 45.77 4.12
5281 7165 8.964476 ACTTGTATATGTTTACTGCTAGCAAT 57.036 30.769 19.86 12.10 0.00 3.56
5311 7195 6.129009 CCTGAGCTCATTCAAAATTTCAAACG 60.129 38.462 18.63 0.00 0.00 3.60
5357 7241 0.249699 ACGCACCGACATGTTCAAGA 60.250 50.000 0.00 0.00 0.00 3.02
5370 7254 1.081242 CTGGCATGAAACACGCACC 60.081 57.895 0.00 0.00 0.00 5.01
5372 7256 1.653667 CACTGGCATGAAACACGCA 59.346 52.632 0.00 0.00 0.00 5.24
5374 7258 0.311790 AAGCACTGGCATGAAACACG 59.688 50.000 0.00 0.00 44.61 4.49
5423 7307 0.824759 GTGGCTGTCGGTCTATTCCT 59.175 55.000 0.00 0.00 0.00 3.36
5426 7310 0.824759 GAGGTGGCTGTCGGTCTATT 59.175 55.000 0.00 0.00 0.00 1.73
5520 7407 0.310854 GACAAGGGTGACGCAAAAGG 59.689 55.000 1.61 0.00 0.00 3.11
5607 7494 4.447054 GCCATCAGACTCAGATATCAAACG 59.553 45.833 5.32 0.00 0.00 3.60
5685 7572 7.345653 AGGATCATCAGTAATTACCTGAACAGA 59.654 37.037 12.05 13.11 0.00 3.41
5714 7601 1.745232 TGTGCCATTAACCCGATGAC 58.255 50.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.