Multiple sequence alignment - TraesCS6A01G131700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G131700 chr6A 100.000 6696 0 0 1 6696 104058428 104051733 0.000000e+00 12366.0
1 TraesCS6A01G131700 chr6A 93.434 198 6 3 1739 1935 7988451 7988642 3.060000e-73 287.0
2 TraesCS6A01G131700 chr6A 91.346 104 8 1 1937 2039 249162450 249162347 2.520000e-29 141.0
3 TraesCS6A01G131700 chr6D 95.978 4749 129 24 1980 6696 86550852 86546134 0.000000e+00 7655.0
4 TraesCS6A01G131700 chr6D 92.375 918 34 19 840 1745 86551845 86550952 0.000000e+00 1275.0
5 TraesCS6A01G131700 chr6D 85.556 450 49 7 66 500 86552688 86552240 2.200000e-124 457.0
6 TraesCS6A01G131700 chr6D 85.022 227 26 7 3631 3853 83217864 83218086 2.430000e-54 224.0
7 TraesCS6A01G131700 chr6D 87.931 174 8 5 494 666 86552019 86551858 6.850000e-45 193.0
8 TraesCS6A01G131700 chr6D 80.392 255 18 14 4462 4710 83221205 83221433 1.490000e-36 165.0
9 TraesCS6A01G131700 chr6D 94.667 75 3 1 4963 5037 83221444 83221517 1.530000e-21 115.0
10 TraesCS6A01G131700 chr6D 86.486 74 8 2 1672 1745 390489565 390489494 5.570000e-11 80.5
11 TraesCS6A01G131700 chr6D 100.000 30 0 0 772 801 86551860 86551831 1.000000e-03 56.5
12 TraesCS6A01G131700 chr6B 87.000 2200 205 43 2285 4471 163972785 163970654 0.000000e+00 2403.0
13 TraesCS6A01G131700 chr6B 87.671 1095 99 16 5615 6695 163969480 163968408 0.000000e+00 1242.0
14 TraesCS6A01G131700 chr6B 86.818 660 46 19 840 1470 163973964 163973317 0.000000e+00 699.0
15 TraesCS6A01G131700 chr6B 87.796 549 44 11 4996 5531 163970023 163969485 7.380000e-174 621.0
16 TraesCS6A01G131700 chr6B 87.475 503 40 12 4469 4962 163970513 163970025 5.870000e-155 558.0
17 TraesCS6A01G131700 chr6B 86.667 120 8 4 549 666 163974095 163973982 7.050000e-25 126.0
18 TraesCS6A01G131700 chr6B 86.486 74 10 0 1672 1745 545218520 545218593 1.550000e-11 82.4
19 TraesCS6A01G131700 chr2B 91.525 236 9 5 4469 4700 256585826 256586054 1.400000e-81 315.0
20 TraesCS6A01G131700 chr2B 88.983 236 15 5 4469 4700 535679770 535679998 1.420000e-71 281.0
21 TraesCS6A01G131700 chr2B 91.707 205 10 3 1731 1935 6165609 6165412 1.840000e-70 278.0
22 TraesCS6A01G131700 chr3A 94.301 193 5 2 1743 1935 701344669 701344483 2.360000e-74 291.0
23 TraesCS6A01G131700 chr3A 91.509 212 11 3 1736 1947 686191011 686191215 1.100000e-72 285.0
24 TraesCS6A01G131700 chr3A 94.690 113 6 0 667 779 661930760 661930648 6.900000e-40 176.0
25 TraesCS6A01G131700 chr3A 87.857 140 14 2 1897 2036 171543778 171543914 1.930000e-35 161.0
26 TraesCS6A01G131700 chr1A 84.848 297 33 6 1745 2039 238868284 238867998 8.500000e-74 289.0
27 TraesCS6A01G131700 chr1A 92.157 204 9 3 1743 1946 17244613 17244417 1.420000e-71 281.0
28 TraesCS6A01G131700 chr7A 92.611 203 8 3 1735 1936 723356053 723355857 1.100000e-72 285.0
29 TraesCS6A01G131700 chr7A 93.860 114 7 0 665 778 609519011 609518898 8.930000e-39 172.0
30 TraesCS6A01G131700 chr7A 96.774 62 2 0 1 62 119870036 119870097 3.300000e-18 104.0
31 TraesCS6A01G131700 chr3B 88.983 236 15 5 4469 4700 810718887 810719115 1.420000e-71 281.0
32 TraesCS6A01G131700 chr3B 89.333 75 5 3 1672 1745 43349699 43349771 2.570000e-14 91.6
33 TraesCS6A01G131700 chr4A 90.610 213 12 4 1723 1935 457823744 457823948 6.610000e-70 276.0
34 TraesCS6A01G131700 chr7D 82.807 285 35 11 1749 2030 616210111 616210384 6.710000e-60 243.0
35 TraesCS6A01G131700 chr7D 93.913 115 6 1 668 781 522160295 522160181 8.930000e-39 172.0
36 TraesCS6A01G131700 chr7D 91.139 79 5 2 1 78 510387726 510387803 9.180000e-19 106.0
37 TraesCS6A01G131700 chr5B 92.913 127 9 0 662 788 394273077 394272951 1.150000e-42 185.0
38 TraesCS6A01G131700 chr5B 93.846 65 4 0 1 65 524253492 524253428 1.540000e-16 99.0
39 TraesCS6A01G131700 chr2D 93.443 122 6 1 653 774 45680985 45681104 5.340000e-41 180.0
40 TraesCS6A01G131700 chr2D 92.079 101 8 0 1936 2036 306530204 306530304 7.000000e-30 143.0
41 TraesCS6A01G131700 chr2D 92.537 67 4 1 1 67 226431878 226431813 1.990000e-15 95.3
42 TraesCS6A01G131700 chr2D 93.548 62 4 0 1 62 603784153 603784214 7.150000e-15 93.5
43 TraesCS6A01G131700 chrUn 95.495 111 5 0 664 774 150796061 150795951 1.920000e-40 178.0
44 TraesCS6A01G131700 chrUn 87.838 74 7 2 1672 1745 30689260 30689331 1.200000e-12 86.1
45 TraesCS6A01G131700 chrUn 88.000 75 5 3 1672 1745 45501087 45501158 1.200000e-12 86.1
46 TraesCS6A01G131700 chr2A 95.495 111 5 0 668 778 79319259 79319149 1.920000e-40 178.0
47 TraesCS6A01G131700 chr2A 93.966 116 7 0 662 777 722814002 722814117 6.900000e-40 176.0
48 TraesCS6A01G131700 chr2A 94.737 95 5 0 1938 2032 537476613 537476707 1.500000e-31 148.0
49 TraesCS6A01G131700 chr7B 94.690 113 6 0 668 780 29313140 29313252 6.900000e-40 176.0
50 TraesCS6A01G131700 chr5D 93.750 96 6 0 1937 2032 443898217 443898312 1.950000e-30 145.0
51 TraesCS6A01G131700 chr5D 94.118 68 4 0 2 69 207404289 207404222 3.300000e-18 104.0
52 TraesCS6A01G131700 chr5D 96.774 62 2 0 1 62 469391903 469391964 3.300000e-18 104.0
53 TraesCS6A01G131700 chr5D 88.312 77 7 2 1670 1745 542696917 542696842 2.570000e-14 91.6
54 TraesCS6A01G131700 chr1D 89.815 108 10 1 1936 2043 314506276 314506382 3.260000e-28 137.0
55 TraesCS6A01G131700 chr1D 96.774 62 1 1 1 62 393597627 393597687 1.190000e-17 102.0
56 TraesCS6A01G131700 chr1D 95.161 62 3 0 1 62 118841092 118841031 1.540000e-16 99.0
57 TraesCS6A01G131700 chr4D 93.333 60 4 0 1673 1732 301525909 301525968 9.250000e-14 89.8
58 TraesCS6A01G131700 chr4D 87.838 74 5 3 1672 1745 452387466 452387397 4.300000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G131700 chr6A 104051733 104058428 6695 True 12366.0 12366 100.000000 1 6696 1 chr6A.!!$R1 6695
1 TraesCS6A01G131700 chr6D 86546134 86552688 6554 True 1927.3 7655 92.368000 66 6696 5 chr6D.!!$R2 6630
2 TraesCS6A01G131700 chr6B 163968408 163974095 5687 True 941.5 2403 87.237833 549 6695 6 chr6B.!!$R1 6146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 461 0.183014 CAGGCTAGTCGGAGGACCTA 59.817 60.000 0.00 0.00 44.54 3.08 F
1125 1385 0.679002 GCGAAACCCTAAACCTCCCC 60.679 60.000 0.00 0.00 0.00 4.81 F
1938 2220 0.472925 TGCCCTAGACACACCCAGAA 60.473 55.000 0.00 0.00 0.00 3.02 F
1939 2221 0.690762 GCCCTAGACACACCCAGAAA 59.309 55.000 0.00 0.00 0.00 2.52 F
1962 2244 2.596904 AATACCCACACGAATCTCCG 57.403 50.000 0.00 0.00 0.00 4.63 F
2682 3184 2.650608 GGTTCGTTGACATTCAAGCAC 58.349 47.619 0.00 0.00 37.00 4.40 F
3566 4078 3.011119 TCTTTGTAACAACCGCACTGTT 58.989 40.909 1.29 1.29 40.13 3.16 F
4436 4962 1.301401 GCCCACGTGCTCAAGTACA 60.301 57.895 10.91 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 2197 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06 R
2624 3126 0.614979 TAGGTCAGTGACTCCCCTGC 60.615 60.000 22.18 4.40 32.47 4.85 R
2755 3257 2.713011 CAGTTAGCGAATGAAGCATGC 58.287 47.619 10.51 10.51 37.01 4.06 R
3897 4417 3.149196 GCCAAGAGGAGTGATTGACAAA 58.851 45.455 0.00 0.00 36.89 2.83 R
3969 4493 6.338937 AGGTACATTAGAACTTAGAAAGGCG 58.661 40.000 0.00 0.00 0.00 5.52 R
4082 4606 2.031495 AGTCCACTCCTTGCTAGGTT 57.969 50.000 14.12 0.00 42.60 3.50 R
5249 5933 1.221635 CCTGGTCCCAACCCATGATA 58.778 55.000 0.00 0.00 45.83 2.15 R
5784 6475 1.268539 CGTTGGTTGTTCAAGTGGAGC 60.269 52.381 0.00 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.183793 TGCATCACTATGATCTTGCGT 57.816 42.857 0.00 0.00 34.28 5.24
21 22 2.867975 TGCATCACTATGATCTTGCGTG 59.132 45.455 0.00 0.86 34.28 5.34
22 23 2.868583 GCATCACTATGATCTTGCGTGT 59.131 45.455 0.00 0.00 34.28 4.49
23 24 3.302935 GCATCACTATGATCTTGCGTGTG 60.303 47.826 0.00 0.00 34.28 3.82
24 25 2.270923 TCACTATGATCTTGCGTGTGC 58.729 47.619 0.00 0.00 43.20 4.57
25 26 4.583863 ATCACTATGATCTTGCGTGTGCG 61.584 47.826 0.00 0.00 36.70 5.34
26 27 6.985268 ATCACTATGATCTTGCGTGTGCGT 62.985 45.833 0.00 0.00 36.70 5.24
27 28 7.671620 ATCACTATGATCTTGCGTGTGCGTA 62.672 44.000 0.00 0.00 36.70 4.42
32 33 1.405526 ATCTTGCGTGTGCGTAGGATT 60.406 47.619 0.00 0.00 44.18 3.01
33 34 2.935238 ATCTTGCGTGTGCGTAGGATTT 60.935 45.455 0.00 0.00 44.18 2.17
34 35 4.419949 ATCTTGCGTGTGCGTAGGATTTT 61.420 43.478 0.00 0.00 44.18 1.82
35 36 5.865159 ATCTTGCGTGTGCGTAGGATTTTT 61.865 41.667 0.00 0.00 44.18 1.94
96 97 5.011023 GTCAATGACAATTGGGAGGTCTTTT 59.989 40.000 8.74 0.00 42.97 2.27
122 123 1.995626 GCCCCTAAGGACCAGCTCA 60.996 63.158 0.00 0.00 38.24 4.26
123 124 1.977293 GCCCCTAAGGACCAGCTCAG 61.977 65.000 0.00 0.00 38.24 3.35
125 126 1.280457 CCCTAAGGACCAGCTCAGTT 58.720 55.000 0.00 0.00 33.47 3.16
127 128 1.625818 CCTAAGGACCAGCTCAGTTGT 59.374 52.381 0.00 0.00 0.00 3.32
128 129 2.039084 CCTAAGGACCAGCTCAGTTGTT 59.961 50.000 0.00 0.00 0.00 2.83
129 130 1.972872 AAGGACCAGCTCAGTTGTTG 58.027 50.000 0.00 0.00 0.00 3.33
148 160 4.464244 TGTTGTTGTTGAACCCTTGAATCA 59.536 37.500 0.00 0.00 0.00 2.57
151 163 6.232581 TGTTGTTGAACCCTTGAATCAATT 57.767 33.333 0.00 0.00 35.70 2.32
153 165 6.127225 TGTTGTTGAACCCTTGAATCAATTCA 60.127 34.615 6.45 6.45 44.42 2.57
166 178 3.347958 TCAATTCAAACGGCTTGACAC 57.652 42.857 2.02 0.00 43.90 3.67
169 181 1.464734 TTCAAACGGCTTGACACCAA 58.535 45.000 2.02 0.00 43.90 3.67
175 187 3.848272 ACGGCTTGACACCAAATATTG 57.152 42.857 0.00 0.00 0.00 1.90
200 212 2.942376 TCGTTGTGCATGACAAGAAACT 59.058 40.909 0.00 0.00 45.46 2.66
206 218 4.515191 TGTGCATGACAAGAAACTCTAACC 59.485 41.667 0.00 0.00 0.00 2.85
208 220 4.997395 TGCATGACAAGAAACTCTAACCTC 59.003 41.667 0.00 0.00 0.00 3.85
215 227 3.498334 AGAAACTCTAACCTCGTCACCT 58.502 45.455 0.00 0.00 0.00 4.00
228 240 2.923605 GTCACCTAAGGAGACGACAG 57.076 55.000 0.00 0.00 34.07 3.51
229 241 2.434428 GTCACCTAAGGAGACGACAGA 58.566 52.381 0.00 0.00 34.07 3.41
245 257 3.193691 CGACAGAAATCTACACCAGAGGT 59.806 47.826 0.00 0.00 36.48 3.85
246 258 4.675671 CGACAGAAATCTACACCAGAGGTC 60.676 50.000 0.00 0.00 36.48 3.85
247 259 4.421131 ACAGAAATCTACACCAGAGGTCT 58.579 43.478 0.00 0.00 36.48 3.85
249 261 4.221703 CAGAAATCTACACCAGAGGTCTGT 59.778 45.833 6.25 0.00 40.27 3.41
264 276 2.099427 GGTCTGTCGACTCCATCCTAAC 59.901 54.545 17.92 1.90 40.10 2.34
266 278 2.014857 CTGTCGACTCCATCCTAACGA 58.985 52.381 17.92 0.00 0.00 3.85
279 291 5.643777 CCATCCTAACGAACAAACTTGAGAT 59.356 40.000 0.00 0.00 0.00 2.75
289 301 5.972107 ACAAACTTGAGATGGATCAAAGG 57.028 39.130 0.00 0.00 38.66 3.11
293 306 2.723322 TGAGATGGATCAAAGGCAGG 57.277 50.000 0.00 0.00 0.00 4.85
300 313 1.213926 GGATCAAAGGCAGGAGACCAT 59.786 52.381 0.00 0.00 0.00 3.55
322 335 1.372087 CGAAGATGAAGCACTGCCCC 61.372 60.000 0.00 0.00 0.00 5.80
348 361 4.072839 GAGGACTGAAAAACCCTAACCTG 58.927 47.826 0.00 0.00 0.00 4.00
351 364 5.077564 GGACTGAAAAACCCTAACCTGAAT 58.922 41.667 0.00 0.00 0.00 2.57
364 377 6.289064 CCTAACCTGAATTAATAGCCGAAGT 58.711 40.000 0.00 0.00 0.00 3.01
370 383 2.953466 TTAATAGCCGAAGTCGCACT 57.047 45.000 0.00 0.00 38.18 4.40
371 384 2.203800 TAATAGCCGAAGTCGCACTG 57.796 50.000 0.00 0.00 38.18 3.66
393 406 1.488705 ATTCACTTCCCTGCCACCGA 61.489 55.000 0.00 0.00 0.00 4.69
397 410 4.329545 TTCCCTGCCACCGACTGC 62.330 66.667 0.00 0.00 0.00 4.40
403 416 4.008933 GCCACCGACTGCTGGAGT 62.009 66.667 0.00 0.00 37.76 3.85
409 422 1.812922 CGACTGCTGGAGTGGCATC 60.813 63.158 6.54 0.00 39.07 3.91
421 434 1.061812 AGTGGCATCTAGAGGGGATGT 60.062 52.381 6.52 0.00 41.63 3.06
422 435 1.071385 GTGGCATCTAGAGGGGATGTG 59.929 57.143 6.52 0.00 41.63 3.21
439 452 1.927895 GTGAATCCACAGGCTAGTCG 58.072 55.000 0.00 0.00 42.72 4.18
445 458 1.668101 CCACAGGCTAGTCGGAGGAC 61.668 65.000 5.02 0.00 43.76 3.85
447 460 1.076632 CAGGCTAGTCGGAGGACCT 60.077 63.158 0.00 0.00 44.54 3.85
448 461 0.183014 CAGGCTAGTCGGAGGACCTA 59.817 60.000 0.00 0.00 44.54 3.08
480 494 3.718210 CTTCACCCTAGCCGCCGAC 62.718 68.421 0.00 0.00 0.00 4.79
522 764 7.621428 AAGATGACATCGATTTCACAAGAAT 57.379 32.000 16.10 0.00 32.89 2.40
635 883 3.696281 TGCTGCATCATGATTTAACGG 57.304 42.857 5.16 2.61 0.00 4.44
677 925 6.461110 TTTTAGAATGTAGTACTCCCTCCG 57.539 41.667 0.00 0.00 0.00 4.63
678 926 3.666345 AGAATGTAGTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
679 927 3.978610 AGAATGTAGTACTCCCTCCGTT 58.021 45.455 0.00 0.00 0.00 4.44
680 928 4.351127 AGAATGTAGTACTCCCTCCGTTT 58.649 43.478 0.00 0.00 0.00 3.60
681 929 4.159879 AGAATGTAGTACTCCCTCCGTTTG 59.840 45.833 0.00 0.00 0.00 2.93
682 930 2.173519 TGTAGTACTCCCTCCGTTTGG 58.826 52.381 0.00 0.00 0.00 3.28
683 931 2.225091 TGTAGTACTCCCTCCGTTTGGA 60.225 50.000 0.00 0.00 43.88 3.53
684 932 2.019807 AGTACTCCCTCCGTTTGGAA 57.980 50.000 0.00 0.00 45.87 3.53
685 933 2.547990 AGTACTCCCTCCGTTTGGAAT 58.452 47.619 0.00 0.00 45.87 3.01
686 934 2.910977 AGTACTCCCTCCGTTTGGAATT 59.089 45.455 0.00 0.00 45.87 2.17
687 935 4.098894 AGTACTCCCTCCGTTTGGAATTA 58.901 43.478 0.00 0.00 45.87 1.40
688 936 3.345508 ACTCCCTCCGTTTGGAATTAC 57.654 47.619 0.00 0.00 45.87 1.89
689 937 2.910977 ACTCCCTCCGTTTGGAATTACT 59.089 45.455 0.00 0.00 45.87 2.24
690 938 3.329814 ACTCCCTCCGTTTGGAATTACTT 59.670 43.478 0.00 0.00 45.87 2.24
691 939 3.681593 TCCCTCCGTTTGGAATTACTTG 58.318 45.455 0.00 0.00 45.87 3.16
692 940 3.073356 TCCCTCCGTTTGGAATTACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
693 941 3.439129 CCCTCCGTTTGGAATTACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
694 942 3.124636 CCTCCGTTTGGAATTACTTGTCG 59.875 47.826 0.00 0.00 45.87 4.35
695 943 2.481185 TCCGTTTGGAATTACTTGTCGC 59.519 45.455 0.00 0.00 42.85 5.19
696 944 2.224549 CCGTTTGGAATTACTTGTCGCA 59.775 45.455 0.00 0.00 37.49 5.10
697 945 3.479006 CGTTTGGAATTACTTGTCGCAG 58.521 45.455 0.00 0.00 0.00 5.18
698 946 3.185594 CGTTTGGAATTACTTGTCGCAGA 59.814 43.478 0.00 0.00 0.00 4.26
699 947 4.319190 CGTTTGGAATTACTTGTCGCAGAA 60.319 41.667 0.00 0.00 39.69 3.02
700 948 5.516090 GTTTGGAATTACTTGTCGCAGAAA 58.484 37.500 0.00 0.00 39.69 2.52
701 949 5.957842 TTGGAATTACTTGTCGCAGAAAT 57.042 34.783 0.00 0.00 39.69 2.17
702 950 5.295431 TGGAATTACTTGTCGCAGAAATG 57.705 39.130 0.00 0.00 39.69 2.32
703 951 4.155826 TGGAATTACTTGTCGCAGAAATGG 59.844 41.667 0.00 0.00 39.69 3.16
704 952 4.394920 GGAATTACTTGTCGCAGAAATGGA 59.605 41.667 0.00 0.00 39.69 3.41
705 953 5.066505 GGAATTACTTGTCGCAGAAATGGAT 59.933 40.000 0.00 0.00 39.69 3.41
706 954 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
707 955 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
708 956 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
709 957 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
710 958 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
711 959 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
712 960 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
713 961 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
714 962 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
715 963 5.631512 GTCGCAGAAATGGATGTATCTAGAC 59.368 44.000 0.00 0.00 39.69 2.59
716 964 4.618912 CGCAGAAATGGATGTATCTAGACG 59.381 45.833 0.00 0.00 0.00 4.18
717 965 5.533482 GCAGAAATGGATGTATCTAGACGT 58.467 41.667 0.00 0.00 0.00 4.34
718 966 6.567891 CGCAGAAATGGATGTATCTAGACGTA 60.568 42.308 0.00 0.00 0.00 3.57
719 967 7.316640 GCAGAAATGGATGTATCTAGACGTAT 58.683 38.462 0.00 0.00 0.00 3.06
720 968 7.815068 GCAGAAATGGATGTATCTAGACGTATT 59.185 37.037 0.00 0.00 0.00 1.89
721 969 9.698309 CAGAAATGGATGTATCTAGACGTATTT 57.302 33.333 0.00 0.00 0.00 1.40
762 1010 9.878667 TTCATATCCAAGACAAGTAATTACGAA 57.121 29.630 9.91 0.33 0.00 3.85
763 1011 9.309516 TCATATCCAAGACAAGTAATTACGAAC 57.690 33.333 9.91 4.02 0.00 3.95
764 1012 6.642683 ATCCAAGACAAGTAATTACGAACG 57.357 37.500 9.91 3.09 0.00 3.95
765 1013 4.925054 TCCAAGACAAGTAATTACGAACGG 59.075 41.667 9.91 6.14 0.00 4.44
766 1014 4.925054 CCAAGACAAGTAATTACGAACGGA 59.075 41.667 9.91 0.00 0.00 4.69
767 1015 5.061808 CCAAGACAAGTAATTACGAACGGAG 59.938 44.000 9.91 0.77 0.00 4.63
768 1016 4.741342 AGACAAGTAATTACGAACGGAGG 58.259 43.478 9.91 0.00 0.00 4.30
769 1017 3.853475 ACAAGTAATTACGAACGGAGGG 58.147 45.455 9.91 0.00 0.00 4.30
770 1018 3.511146 ACAAGTAATTACGAACGGAGGGA 59.489 43.478 9.91 0.00 0.00 4.20
801 1049 5.008019 GTCACACACATGTTGAGAGAAATGT 59.992 40.000 12.90 0.00 36.72 2.71
802 1050 6.202762 GTCACACACATGTTGAGAGAAATGTA 59.797 38.462 12.90 0.00 36.72 2.29
803 1051 6.936335 TCACACACATGTTGAGAGAAATGTAT 59.064 34.615 12.90 0.00 36.72 2.29
804 1052 8.093927 TCACACACATGTTGAGAGAAATGTATA 58.906 33.333 12.90 0.00 36.72 1.47
805 1053 8.886719 CACACACATGTTGAGAGAAATGTATAT 58.113 33.333 12.90 0.00 36.72 0.86
806 1054 9.102757 ACACACATGTTGAGAGAAATGTATATC 57.897 33.333 12.90 0.00 34.46 1.63
807 1055 8.554528 CACACATGTTGAGAGAAATGTATATCC 58.445 37.037 0.00 0.00 32.15 2.59
808 1056 7.439356 ACACATGTTGAGAGAAATGTATATCCG 59.561 37.037 0.00 0.00 32.15 4.18
809 1057 6.425114 ACATGTTGAGAGAAATGTATATCCGC 59.575 38.462 0.00 0.00 31.63 5.54
810 1058 4.982295 TGTTGAGAGAAATGTATATCCGCG 59.018 41.667 0.00 0.00 0.00 6.46
811 1059 5.220381 GTTGAGAGAAATGTATATCCGCGA 58.780 41.667 8.23 0.00 0.00 5.87
812 1060 5.644977 TGAGAGAAATGTATATCCGCGAT 57.355 39.130 8.23 1.39 0.00 4.58
813 1061 6.753107 TGAGAGAAATGTATATCCGCGATA 57.247 37.500 8.23 4.01 0.00 2.92
814 1062 7.334844 TGAGAGAAATGTATATCCGCGATAT 57.665 36.000 8.23 11.64 38.57 1.63
815 1063 7.772166 TGAGAGAAATGTATATCCGCGATATT 58.228 34.615 8.23 0.00 36.70 1.28
816 1064 8.899771 TGAGAGAAATGTATATCCGCGATATTA 58.100 33.333 8.23 3.18 36.70 0.98
817 1065 9.731819 GAGAGAAATGTATATCCGCGATATTAA 57.268 33.333 8.23 2.09 36.70 1.40
825 1073 9.687210 TGTATATCCGCGATATTAATATGTTCC 57.313 33.333 12.74 0.00 36.70 3.62
826 1074 9.136952 GTATATCCGCGATATTAATATGTTCCC 57.863 37.037 12.74 0.00 36.70 3.97
827 1075 4.761975 TCCGCGATATTAATATGTTCCCC 58.238 43.478 12.74 0.00 0.00 4.81
828 1076 4.468510 TCCGCGATATTAATATGTTCCCCT 59.531 41.667 12.74 0.00 0.00 4.79
829 1077 5.046159 TCCGCGATATTAATATGTTCCCCTT 60.046 40.000 12.74 0.00 0.00 3.95
830 1078 5.064707 CCGCGATATTAATATGTTCCCCTTG 59.935 44.000 12.74 0.00 0.00 3.61
831 1079 5.642063 CGCGATATTAATATGTTCCCCTTGT 59.358 40.000 12.74 0.00 0.00 3.16
832 1080 6.183360 CGCGATATTAATATGTTCCCCTTGTC 60.183 42.308 12.74 0.00 0.00 3.18
833 1081 6.183360 GCGATATTAATATGTTCCCCTTGTCG 60.183 42.308 12.74 7.37 0.00 4.35
834 1082 6.312918 CGATATTAATATGTTCCCCTTGTCGG 59.687 42.308 12.74 0.00 0.00 4.79
835 1083 5.640158 ATTAATATGTTCCCCTTGTCGGA 57.360 39.130 0.00 0.00 33.16 4.55
836 1084 5.438698 TTAATATGTTCCCCTTGTCGGAA 57.561 39.130 0.00 0.00 37.04 4.30
837 1085 4.310022 AATATGTTCCCCTTGTCGGAAA 57.690 40.909 0.00 0.00 41.03 3.13
838 1086 2.668144 ATGTTCCCCTTGTCGGAAAA 57.332 45.000 0.00 0.00 41.03 2.29
839 1087 2.438800 TGTTCCCCTTGTCGGAAAAA 57.561 45.000 0.00 0.00 41.03 1.94
840 1088 2.952116 TGTTCCCCTTGTCGGAAAAAT 58.048 42.857 0.00 0.00 41.03 1.82
841 1089 2.625790 TGTTCCCCTTGTCGGAAAAATG 59.374 45.455 0.00 0.00 41.03 2.32
842 1090 2.626266 GTTCCCCTTGTCGGAAAAATGT 59.374 45.455 0.00 0.00 41.03 2.71
843 1091 2.952116 TCCCCTTGTCGGAAAAATGTT 58.048 42.857 0.00 0.00 33.16 2.71
844 1092 3.301274 TCCCCTTGTCGGAAAAATGTTT 58.699 40.909 0.00 0.00 33.16 2.83
845 1093 3.068873 TCCCCTTGTCGGAAAAATGTTTG 59.931 43.478 0.00 0.00 33.16 2.93
846 1094 3.068873 CCCCTTGTCGGAAAAATGTTTGA 59.931 43.478 0.00 0.00 33.16 2.69
847 1095 4.298332 CCCTTGTCGGAAAAATGTTTGAG 58.702 43.478 0.00 0.00 33.16 3.02
848 1096 4.037446 CCCTTGTCGGAAAAATGTTTGAGA 59.963 41.667 0.00 0.00 33.16 3.27
849 1097 5.215160 CCTTGTCGGAAAAATGTTTGAGAG 58.785 41.667 0.00 0.00 33.16 3.20
850 1098 5.008613 CCTTGTCGGAAAAATGTTTGAGAGA 59.991 40.000 0.00 0.00 33.16 3.10
851 1099 6.443934 TTGTCGGAAAAATGTTTGAGAGAA 57.556 33.333 0.00 0.00 0.00 2.87
852 1100 6.443934 TGTCGGAAAAATGTTTGAGAGAAA 57.556 33.333 0.00 0.00 0.00 2.52
853 1101 7.038154 TGTCGGAAAAATGTTTGAGAGAAAT 57.962 32.000 0.00 0.00 0.00 2.17
854 1102 6.917477 TGTCGGAAAAATGTTTGAGAGAAATG 59.083 34.615 0.00 0.00 0.00 2.32
932 1181 3.451894 CGGGTTCTGGGCATTGGC 61.452 66.667 0.70 0.70 40.13 4.52
1121 1381 1.673337 GCCGCGAAACCCTAAACCT 60.673 57.895 8.23 0.00 0.00 3.50
1122 1382 1.642037 GCCGCGAAACCCTAAACCTC 61.642 60.000 8.23 0.00 0.00 3.85
1123 1383 1.022982 CCGCGAAACCCTAAACCTCC 61.023 60.000 8.23 0.00 0.00 4.30
1124 1384 1.022982 CGCGAAACCCTAAACCTCCC 61.023 60.000 0.00 0.00 0.00 4.30
1125 1385 0.679002 GCGAAACCCTAAACCTCCCC 60.679 60.000 0.00 0.00 0.00 4.81
1126 1386 0.989602 CGAAACCCTAAACCTCCCCT 59.010 55.000 0.00 0.00 0.00 4.79
1127 1387 1.065636 CGAAACCCTAAACCTCCCCTC 60.066 57.143 0.00 0.00 0.00 4.30
1128 1388 1.284198 GAAACCCTAAACCTCCCCTCC 59.716 57.143 0.00 0.00 0.00 4.30
1247 1520 1.449070 GTCCCCGTGTCCCGATTTC 60.449 63.158 0.00 0.00 39.56 2.17
1269 1542 1.391157 GGGTTGGTGTGCTTGCTGAA 61.391 55.000 0.00 0.00 0.00 3.02
1330 1603 0.878961 GGTCGATTCGGGGGATTTCG 60.879 60.000 6.18 0.00 0.00 3.46
1341 1614 2.097036 GGGGATTTCGTTCGGGATTTT 58.903 47.619 0.00 0.00 0.00 1.82
1349 1622 4.768130 TCGTTCGGGATTTTATTTTGCA 57.232 36.364 0.00 0.00 0.00 4.08
1350 1623 5.317733 TCGTTCGGGATTTTATTTTGCAT 57.682 34.783 0.00 0.00 0.00 3.96
1351 1624 6.438259 TCGTTCGGGATTTTATTTTGCATA 57.562 33.333 0.00 0.00 0.00 3.14
1352 1625 6.853720 TCGTTCGGGATTTTATTTTGCATAA 58.146 32.000 0.00 0.00 0.00 1.90
1353 1626 7.313646 TCGTTCGGGATTTTATTTTGCATAAA 58.686 30.769 0.00 0.00 0.00 1.40
1354 1627 7.976734 TCGTTCGGGATTTTATTTTGCATAAAT 59.023 29.630 10.36 10.36 0.00 1.40
1355 1628 8.599774 CGTTCGGGATTTTATTTTGCATAAATT 58.400 29.630 10.66 0.46 0.00 1.82
1358 1631 8.887717 TCGGGATTTTATTTTGCATAAATTTGG 58.112 29.630 0.00 0.00 0.00 3.28
1359 1632 7.643371 CGGGATTTTATTTTGCATAAATTTGGC 59.357 33.333 0.00 5.36 0.00 4.52
1360 1633 8.685427 GGGATTTTATTTTGCATAAATTTGGCT 58.315 29.630 15.01 1.50 0.00 4.75
1384 1665 5.001833 GGGGGTTTTCTTAGGGTTTAAGA 57.998 43.478 0.00 0.00 0.00 2.10
1392 1673 8.900781 GTTTTCTTAGGGTTTAAGAGTTGACTT 58.099 33.333 0.00 0.00 35.30 3.01
1398 1679 5.131475 AGGGTTTAAGAGTTGACTTGTGGTA 59.869 40.000 0.00 0.00 0.00 3.25
1422 1703 1.012486 CGCGGAGTTGGTTACCTGTC 61.012 60.000 2.07 0.00 0.00 3.51
1682 1964 9.520204 CAATTTTAATAGTTTGATGTGCCCTAG 57.480 33.333 0.00 0.00 0.00 3.02
1713 1995 5.473162 CACATCTAAGTGACCCAATCAAACA 59.527 40.000 0.00 0.00 42.05 2.83
1714 1996 5.473504 ACATCTAAGTGACCCAATCAAACAC 59.526 40.000 0.00 0.00 39.72 3.32
1759 2041 8.803201 ATAAAGAGAAACAGTTTTGCTAAAGC 57.197 30.769 0.00 0.00 42.50 3.51
1785 2067 7.069852 CATCTAGATGTGCCATAAGTATTGC 57.930 40.000 22.42 0.00 34.23 3.56
1786 2068 6.173427 TCTAGATGTGCCATAAGTATTGCA 57.827 37.500 0.00 0.00 32.69 4.08
1794 2076 6.866010 TGCCATAAGTATTGCACATCTAAG 57.134 37.500 0.00 0.00 30.49 2.18
1795 2077 6.356556 TGCCATAAGTATTGCACATCTAAGT 58.643 36.000 0.00 0.00 30.49 2.24
1796 2078 6.483307 TGCCATAAGTATTGCACATCTAAGTC 59.517 38.462 0.00 0.00 30.49 3.01
1797 2079 6.073003 GCCATAAGTATTGCACATCTAAGTCC 60.073 42.308 0.00 0.00 0.00 3.85
1798 2080 7.220030 CCATAAGTATTGCACATCTAAGTCCT 58.780 38.462 0.00 0.00 0.00 3.85
1799 2081 8.367911 CCATAAGTATTGCACATCTAAGTCCTA 58.632 37.037 0.00 0.00 0.00 2.94
1800 2082 9.935241 CATAAGTATTGCACATCTAAGTCCTAT 57.065 33.333 0.00 0.00 0.00 2.57
1804 2086 9.314133 AGTATTGCACATCTAAGTCCTATATCA 57.686 33.333 0.00 0.00 0.00 2.15
1809 2091 9.479549 TGCACATCTAAGTCCTATATCATATCA 57.520 33.333 0.00 0.00 0.00 2.15
1828 2110 9.987272 TCATATCATTGATCTTACGTTGAGATT 57.013 29.630 13.35 2.52 34.13 2.40
1830 2112 9.987272 ATATCATTGATCTTACGTTGAGATTCA 57.013 29.630 13.35 10.51 34.13 2.57
1831 2113 8.899427 ATCATTGATCTTACGTTGAGATTCAT 57.101 30.769 13.35 7.63 34.13 2.57
1832 2114 8.134905 TCATTGATCTTACGTTGAGATTCATG 57.865 34.615 13.35 15.69 34.13 3.07
1833 2115 7.765819 TCATTGATCTTACGTTGAGATTCATGT 59.234 33.333 19.69 10.12 34.13 3.21
1834 2116 6.892310 TGATCTTACGTTGAGATTCATGTG 57.108 37.500 13.35 0.00 34.13 3.21
1835 2117 5.812127 TGATCTTACGTTGAGATTCATGTGG 59.188 40.000 13.35 0.00 34.13 4.17
1836 2118 5.400066 TCTTACGTTGAGATTCATGTGGA 57.600 39.130 0.00 0.00 0.00 4.02
1837 2119 5.977635 TCTTACGTTGAGATTCATGTGGAT 58.022 37.500 0.00 0.00 0.00 3.41
1838 2120 7.107639 TCTTACGTTGAGATTCATGTGGATA 57.892 36.000 0.00 0.00 0.00 2.59
1839 2121 7.726216 TCTTACGTTGAGATTCATGTGGATAT 58.274 34.615 0.00 0.00 0.00 1.63
1840 2122 8.204160 TCTTACGTTGAGATTCATGTGGATATT 58.796 33.333 0.00 0.00 0.00 1.28
1841 2123 8.731275 TTACGTTGAGATTCATGTGGATATTT 57.269 30.769 0.00 0.00 0.00 1.40
1842 2124 7.630242 ACGTTGAGATTCATGTGGATATTTT 57.370 32.000 0.00 0.00 0.00 1.82
1843 2125 7.697691 ACGTTGAGATTCATGTGGATATTTTC 58.302 34.615 0.00 0.00 0.00 2.29
1844 2126 7.554118 ACGTTGAGATTCATGTGGATATTTTCT 59.446 33.333 0.00 0.00 0.00 2.52
1845 2127 8.400947 CGTTGAGATTCATGTGGATATTTTCTT 58.599 33.333 0.00 0.00 0.00 2.52
1875 2157 6.966435 TTTTTCTTTTCCTCTTTGTGCTTG 57.034 33.333 0.00 0.00 0.00 4.01
1876 2158 5.913137 TTTCTTTTCCTCTTTGTGCTTGA 57.087 34.783 0.00 0.00 0.00 3.02
1877 2159 6.469782 TTTCTTTTCCTCTTTGTGCTTGAT 57.530 33.333 0.00 0.00 0.00 2.57
1878 2160 6.469782 TTCTTTTCCTCTTTGTGCTTGATT 57.530 33.333 0.00 0.00 0.00 2.57
1879 2161 6.076981 TCTTTTCCTCTTTGTGCTTGATTC 57.923 37.500 0.00 0.00 0.00 2.52
1880 2162 5.593909 TCTTTTCCTCTTTGTGCTTGATTCA 59.406 36.000 0.00 0.00 0.00 2.57
1881 2163 4.836125 TTCCTCTTTGTGCTTGATTCAC 57.164 40.909 0.00 0.00 35.14 3.18
1882 2164 4.090761 TCCTCTTTGTGCTTGATTCACT 57.909 40.909 0.00 0.00 35.58 3.41
1883 2165 4.067896 TCCTCTTTGTGCTTGATTCACTC 58.932 43.478 0.00 0.00 35.58 3.51
1884 2166 3.817084 CCTCTTTGTGCTTGATTCACTCA 59.183 43.478 0.00 0.00 35.58 3.41
1885 2167 4.320057 CCTCTTTGTGCTTGATTCACTCAC 60.320 45.833 9.39 9.39 35.58 3.51
1886 2168 4.454678 TCTTTGTGCTTGATTCACTCACT 58.545 39.130 14.71 0.00 35.58 3.41
1887 2169 4.883585 TCTTTGTGCTTGATTCACTCACTT 59.116 37.500 14.71 0.00 35.58 3.16
1888 2170 6.054941 TCTTTGTGCTTGATTCACTCACTTA 58.945 36.000 14.71 4.85 35.58 2.24
1889 2171 5.929697 TTGTGCTTGATTCACTCACTTAG 57.070 39.130 14.71 0.00 35.58 2.18
1890 2172 5.213891 TGTGCTTGATTCACTCACTTAGA 57.786 39.130 14.71 0.00 35.58 2.10
1891 2173 5.798132 TGTGCTTGATTCACTCACTTAGAT 58.202 37.500 14.71 0.00 35.58 1.98
1892 2174 5.640783 TGTGCTTGATTCACTCACTTAGATG 59.359 40.000 14.71 0.00 35.58 2.90
1893 2175 5.641209 GTGCTTGATTCACTCACTTAGATGT 59.359 40.000 9.16 0.00 32.17 3.06
1894 2176 5.640783 TGCTTGATTCACTCACTTAGATGTG 59.359 40.000 0.00 0.00 39.15 3.21
1895 2177 5.641209 GCTTGATTCACTCACTTAGATGTGT 59.359 40.000 0.00 0.00 38.90 3.72
1896 2178 6.813649 GCTTGATTCACTCACTTAGATGTGTA 59.186 38.462 0.00 0.00 38.90 2.90
1897 2179 7.331934 GCTTGATTCACTCACTTAGATGTGTAA 59.668 37.037 0.00 0.00 38.90 2.41
1898 2180 9.376075 CTTGATTCACTCACTTAGATGTGTAAT 57.624 33.333 0.00 0.00 38.90 1.89
1907 2189 9.672086 CTCACTTAGATGTGTAATAACTAGAGC 57.328 37.037 0.00 0.00 38.90 4.09
1908 2190 9.185680 TCACTTAGATGTGTAATAACTAGAGCA 57.814 33.333 0.00 0.00 38.90 4.26
1909 2191 9.239002 CACTTAGATGTGTAATAACTAGAGCAC 57.761 37.037 0.00 0.00 33.61 4.40
1910 2192 8.967918 ACTTAGATGTGTAATAACTAGAGCACA 58.032 33.333 0.00 0.00 40.42 4.57
1911 2193 9.973450 CTTAGATGTGTAATAACTAGAGCACAT 57.027 33.333 7.56 7.56 46.19 3.21
1930 2212 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
1934 2216 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
1935 2217 1.460497 TGTGCCCTAGACACACCCA 60.460 57.895 12.81 0.00 42.88 4.51
1936 2218 1.296715 GTGCCCTAGACACACCCAG 59.703 63.158 10.07 0.00 37.96 4.45
1937 2219 1.157513 TGCCCTAGACACACCCAGA 59.842 57.895 0.00 0.00 0.00 3.86
1938 2220 0.472925 TGCCCTAGACACACCCAGAA 60.473 55.000 0.00 0.00 0.00 3.02
1939 2221 0.690762 GCCCTAGACACACCCAGAAA 59.309 55.000 0.00 0.00 0.00 2.52
1946 2228 6.472887 CCTAGACACACCCAGAAAGAAAATA 58.527 40.000 0.00 0.00 0.00 1.40
1962 2244 2.596904 AATACCCACACGAATCTCCG 57.403 50.000 0.00 0.00 0.00 4.63
2059 2406 8.915057 AATTTGATACTACCAGGATCTCATTG 57.085 34.615 0.00 0.00 0.00 2.82
2082 2429 3.708890 TGTTTCAACTTGATGCTGCTTG 58.291 40.909 0.00 0.00 0.00 4.01
2132 2479 6.701400 ACCACTGAAATTAGCAATTTGTTGTC 59.299 34.615 10.33 0.02 40.97 3.18
2441 2940 9.809395 TCACATAACCTATCTATAGCTGTACTT 57.191 33.333 0.00 0.00 0.00 2.24
2682 3184 2.650608 GGTTCGTTGACATTCAAGCAC 58.349 47.619 0.00 0.00 37.00 4.40
2765 3267 3.524606 GCCCGCTGCATGCTTCAT 61.525 61.111 20.33 0.00 40.77 2.57
3196 3698 4.275810 CCATGAACTCCAGACCAAATCAT 58.724 43.478 0.00 0.00 0.00 2.45
3397 3904 3.976942 CGTTTGGCATGAATTAGCTATGC 59.023 43.478 9.49 9.49 44.81 3.14
3401 3908 3.316029 TGGCATGAATTAGCTATGCACAC 59.684 43.478 17.76 4.10 46.74 3.82
3457 3964 6.813152 CCTGCATTTAGTTCAACCATTAAAGG 59.187 38.462 0.00 0.00 0.00 3.11
3478 3985 6.472686 AGGATCATCTGTAGTTTGTACTCC 57.527 41.667 0.00 0.00 35.78 3.85
3479 3986 5.364157 AGGATCATCTGTAGTTTGTACTCCC 59.636 44.000 0.00 0.00 35.78 4.30
3566 4078 3.011119 TCTTTGTAACAACCGCACTGTT 58.989 40.909 1.29 1.29 40.13 3.16
3676 4196 5.452356 GGGCTTTATGGATCTGGAACATTTG 60.452 44.000 0.00 0.00 38.20 2.32
3786 4306 5.010922 TCCTTCCATGAAATCAAGGTTTGTG 59.989 40.000 4.74 0.00 35.67 3.33
3854 4374 7.501225 TGTGCTTTTAGTTTTAGCCTTCTAACT 59.499 33.333 0.00 0.00 34.71 2.24
3936 4456 4.032960 TGGCAGTGACAATGGATACTTT 57.967 40.909 0.00 0.00 37.61 2.66
4082 4606 5.716703 TGTCCAATCTCTGTCTTCTACATGA 59.283 40.000 0.00 0.00 37.50 3.07
4086 4610 6.351711 CCAATCTCTGTCTTCTACATGAACCT 60.352 42.308 0.00 0.00 37.50 3.50
4225 4749 8.084684 AGTCTGTTTTATTTTCTGAAAGGATGC 58.915 33.333 2.75 0.00 0.00 3.91
4247 4771 5.707242 CATTCAGCATGCCTTAGATCATT 57.293 39.130 15.66 0.00 34.76 2.57
4248 4772 5.700846 CATTCAGCATGCCTTAGATCATTC 58.299 41.667 15.66 0.00 34.76 2.67
4249 4773 4.426736 TCAGCATGCCTTAGATCATTCA 57.573 40.909 15.66 0.00 34.76 2.57
4250 4774 4.386711 TCAGCATGCCTTAGATCATTCAG 58.613 43.478 15.66 0.00 34.76 3.02
4251 4775 3.058155 CAGCATGCCTTAGATCATTCAGC 60.058 47.826 15.66 0.00 0.00 4.26
4252 4776 2.882761 GCATGCCTTAGATCATTCAGCA 59.117 45.455 6.36 0.00 0.00 4.41
4253 4777 3.506455 GCATGCCTTAGATCATTCAGCAT 59.494 43.478 6.36 0.00 39.92 3.79
4254 4778 5.048153 CATGCCTTAGATCATTCAGCATG 57.952 43.478 17.50 17.50 46.82 4.06
4255 4779 2.882761 TGCCTTAGATCATTCAGCATGC 59.117 45.455 10.51 10.51 34.76 4.06
4256 4780 2.228343 GCCTTAGATCATTCAGCATGCC 59.772 50.000 15.66 0.00 34.76 4.40
4257 4781 3.752665 CCTTAGATCATTCAGCATGCCT 58.247 45.455 15.66 3.95 34.76 4.75
4258 4782 4.142790 CCTTAGATCATTCAGCATGCCTT 58.857 43.478 15.66 0.00 34.76 4.35
4259 4783 5.311265 CCTTAGATCATTCAGCATGCCTTA 58.689 41.667 15.66 0.00 34.76 2.69
4344 4868 3.276857 CAATACTCAAGCTGTGCCATCT 58.723 45.455 0.00 0.00 0.00 2.90
4423 4947 4.278419 GTGAATTATATTGGTCCTGCCCAC 59.722 45.833 0.00 0.00 33.14 4.61
4427 4951 2.813226 TATTGGTCCTGCCCACGTGC 62.813 60.000 10.91 0.00 33.14 5.34
4436 4962 1.301401 GCCCACGTGCTCAAGTACA 60.301 57.895 10.91 0.00 0.00 2.90
4442 4968 3.579709 CACGTGCTCAAGTACAATCTCT 58.420 45.455 0.82 0.00 0.00 3.10
4602 5275 7.834681 TCTTTGTCCACTACTATCTCTGTATGT 59.165 37.037 0.00 0.00 0.00 2.29
4637 5310 5.373222 TGCTAGCTTCCTTTTCTTGTGTTA 58.627 37.500 17.23 0.00 0.00 2.41
4641 5314 7.148171 GCTAGCTTCCTTTTCTTGTGTTATCAT 60.148 37.037 7.70 0.00 0.00 2.45
4848 5523 5.012871 GGTTATCCTGACTACCCTAATTCCC 59.987 48.000 0.00 0.00 0.00 3.97
4885 5563 6.585695 TCGACAGATTTAGTCCAACTAACT 57.414 37.500 0.00 0.00 40.12 2.24
4891 5569 7.604164 ACAGATTTAGTCCAACTAACTGACATG 59.396 37.037 17.48 0.00 40.12 3.21
4913 5591 4.160065 TGCTGGCAATGCATAACTAACAAT 59.840 37.500 7.79 0.00 35.31 2.71
5027 5705 4.637483 TTCTCTTCCACAAAGTTGCTTG 57.363 40.909 0.00 0.00 36.31 4.01
5249 5933 1.738830 GCAGTTTGCATTGCCGCAT 60.739 52.632 6.12 0.00 44.26 4.73
5380 6064 2.050144 CTTTCCCCCTAGCAGCAGATA 58.950 52.381 0.00 0.00 0.00 1.98
5457 6142 5.748630 GGGATGTTGAACTGTGTTTCTTTTC 59.251 40.000 0.00 0.00 0.00 2.29
5476 6161 7.162082 TCTTTTCTGATCAAACTAGGGAACTC 58.838 38.462 0.00 0.00 43.67 3.01
5516 6207 5.104360 CCCAAGGAGATTGAAGTTAGGATGA 60.104 44.000 0.00 0.00 41.83 2.92
5556 6247 0.301687 GTGTCTGTTCAGTGCACGTG 59.698 55.000 12.28 12.28 0.00 4.49
5584 6275 6.405278 TTCATGGCGAATGTCTATTCTAGA 57.595 37.500 0.00 0.00 40.43 2.43
5635 6326 0.770499 TGGCTGTTCAATCCTGTGGA 59.230 50.000 0.00 0.00 35.55 4.02
5639 6330 2.811873 GCTGTTCAATCCTGTGGACTGT 60.812 50.000 0.00 0.00 32.98 3.55
5702 6393 3.665745 ATCACAAATCTGCCACAAACC 57.334 42.857 0.00 0.00 0.00 3.27
5708 6399 0.606401 ATCTGCCACAAACCGGAGTG 60.606 55.000 9.46 13.89 35.56 3.51
5710 6401 4.025401 GCCACAAACCGGAGTGCG 62.025 66.667 9.46 9.12 34.48 5.34
5828 6525 6.540189 CGAACAAGATTCCACATATTCCTCTT 59.460 38.462 0.00 0.00 0.00 2.85
5859 6556 1.427072 ATACACAGGGGCTATGGGGC 61.427 60.000 0.00 0.00 40.05 5.80
5885 6586 1.732259 GGTAGTGCCTTCGAACACATG 59.268 52.381 17.96 0.00 39.30 3.21
6283 6984 5.104982 TGCAAAAGAACAGAAGGAAATTGGT 60.105 36.000 0.00 0.00 0.00 3.67
6284 6985 6.097554 TGCAAAAGAACAGAAGGAAATTGGTA 59.902 34.615 0.00 0.00 0.00 3.25
6285 6986 7.154656 GCAAAAGAACAGAAGGAAATTGGTAT 58.845 34.615 0.00 0.00 0.00 2.73
6286 6987 7.116805 GCAAAAGAACAGAAGGAAATTGGTATG 59.883 37.037 0.00 0.00 0.00 2.39
6287 6988 6.840780 AAGAACAGAAGGAAATTGGTATGG 57.159 37.500 0.00 0.00 0.00 2.74
6288 6989 5.264395 AGAACAGAAGGAAATTGGTATGGG 58.736 41.667 0.00 0.00 0.00 4.00
6289 6990 4.675063 ACAGAAGGAAATTGGTATGGGT 57.325 40.909 0.00 0.00 0.00 4.51
6290 6991 5.010708 ACAGAAGGAAATTGGTATGGGTT 57.989 39.130 0.00 0.00 0.00 4.11
6291 6992 4.772100 ACAGAAGGAAATTGGTATGGGTTG 59.228 41.667 0.00 0.00 0.00 3.77
6292 6993 5.016173 CAGAAGGAAATTGGTATGGGTTGA 58.984 41.667 0.00 0.00 0.00 3.18
6293 6994 5.658190 CAGAAGGAAATTGGTATGGGTTGAT 59.342 40.000 0.00 0.00 0.00 2.57
6372 7084 2.752030 TGTACTCTGGATCTTGAGGGG 58.248 52.381 15.95 0.00 34.84 4.79
6381 7093 6.209774 TCTGGATCTTGAGGGGAACTTAATA 58.790 40.000 0.00 0.00 0.00 0.98
6432 7146 1.302431 CACAGTGCGGGGTCATTGA 60.302 57.895 0.00 0.00 0.00 2.57
6609 7324 2.290260 CCAGGTGATCACTACAGGCAAA 60.290 50.000 24.50 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.867975 CACGCAAGATCATAGTGATGCA 59.132 45.455 0.00 0.00 37.20 3.96
1 2 2.868583 ACACGCAAGATCATAGTGATGC 59.131 45.455 14.52 0.00 37.20 3.91
2 3 3.302935 GCACACGCAAGATCATAGTGATG 60.303 47.826 14.52 10.71 36.10 3.07
3 4 2.868583 GCACACGCAAGATCATAGTGAT 59.131 45.455 14.52 0.00 37.74 3.06
4 5 2.270923 GCACACGCAAGATCATAGTGA 58.729 47.619 14.52 0.00 43.62 3.41
5 6 1.005662 CGCACACGCAAGATCATAGTG 60.006 52.381 0.00 2.38 43.62 2.74
6 7 1.280982 CGCACACGCAAGATCATAGT 58.719 50.000 0.00 0.00 43.62 2.12
7 8 1.280982 ACGCACACGCAAGATCATAG 58.719 50.000 0.00 0.00 45.53 2.23
8 9 2.459934 CTACGCACACGCAAGATCATA 58.540 47.619 0.00 0.00 45.53 2.15
9 10 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
10 11 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
11 12 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
12 13 0.175760 ATCCTACGCACACGCAAGAT 59.824 50.000 0.00 0.00 45.53 2.40
13 14 0.037697 AATCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
14 15 0.796312 AAATCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
15 16 1.231221 AAAATCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
16 17 1.231221 AAAAATCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
34 35 8.705594 TGTTAGGGAACATGGTAATTTCAAAAA 58.294 29.630 0.00 0.00 40.72 1.94
35 36 8.251383 TGTTAGGGAACATGGTAATTTCAAAA 57.749 30.769 0.00 0.00 40.72 2.44
36 37 7.039363 CCTGTTAGGGAACATGGTAATTTCAAA 60.039 37.037 0.00 0.00 44.53 2.69
37 38 6.435904 CCTGTTAGGGAACATGGTAATTTCAA 59.564 38.462 0.00 0.00 44.53 2.69
38 39 5.949354 CCTGTTAGGGAACATGGTAATTTCA 59.051 40.000 0.00 0.00 44.53 2.69
39 40 6.184789 TCCTGTTAGGGAACATGGTAATTTC 58.815 40.000 0.00 0.00 44.53 2.17
40 41 6.147437 TCCTGTTAGGGAACATGGTAATTT 57.853 37.500 0.00 0.00 44.53 1.82
41 42 5.789574 TCCTGTTAGGGAACATGGTAATT 57.210 39.130 0.00 0.00 44.53 1.40
42 43 5.994416 ATCCTGTTAGGGAACATGGTAAT 57.006 39.130 0.00 0.00 44.53 1.89
43 44 5.251932 TCAATCCTGTTAGGGAACATGGTAA 59.748 40.000 0.00 0.00 44.53 2.85
44 45 4.785914 TCAATCCTGTTAGGGAACATGGTA 59.214 41.667 0.00 0.00 44.53 3.25
45 46 3.591527 TCAATCCTGTTAGGGAACATGGT 59.408 43.478 0.00 0.00 44.53 3.55
46 47 3.947834 GTCAATCCTGTTAGGGAACATGG 59.052 47.826 0.00 0.00 44.53 3.66
47 48 3.947834 GGTCAATCCTGTTAGGGAACATG 59.052 47.826 0.00 0.00 44.53 3.21
48 49 3.852578 AGGTCAATCCTGTTAGGGAACAT 59.147 43.478 0.00 0.00 46.19 2.71
49 50 3.256704 AGGTCAATCCTGTTAGGGAACA 58.743 45.455 0.00 0.00 46.19 3.18
51 52 8.115069 TTGACAAGGTCAATCCTGTTAGGGAA 62.115 42.308 7.66 0.00 45.88 3.97
52 53 6.700154 TTGACAAGGTCAATCCTGTTAGGGA 61.700 44.000 7.66 0.00 45.88 4.20
53 54 4.506625 TTGACAAGGTCAATCCTGTTAGGG 60.507 45.833 7.66 0.00 45.88 3.53
54 55 4.651778 TTGACAAGGTCAATCCTGTTAGG 58.348 43.478 7.66 0.00 45.88 2.69
74 75 5.473066 AAAAGACCTCCCAATTGTCATTG 57.527 39.130 4.43 0.00 39.79 2.82
83 84 2.364970 CACATGCAAAAAGACCTCCCAA 59.635 45.455 0.00 0.00 0.00 4.12
84 85 1.962807 CACATGCAAAAAGACCTCCCA 59.037 47.619 0.00 0.00 0.00 4.37
86 87 1.337167 GGCACATGCAAAAAGACCTCC 60.337 52.381 6.15 0.00 44.36 4.30
87 88 1.337167 GGGCACATGCAAAAAGACCTC 60.337 52.381 6.15 0.00 44.36 3.85
89 90 0.320683 GGGGCACATGCAAAAAGACC 60.321 55.000 6.15 0.00 44.36 3.85
96 97 0.323360 GTCCTTAGGGGCACATGCAA 60.323 55.000 6.15 0.00 44.36 4.08
122 123 3.829601 TCAAGGGTTCAACAACAACAACT 59.170 39.130 0.00 0.00 33.70 3.16
123 124 4.181309 TCAAGGGTTCAACAACAACAAC 57.819 40.909 0.00 0.00 33.70 3.32
125 126 4.464244 TGATTCAAGGGTTCAACAACAACA 59.536 37.500 0.00 0.00 33.70 3.33
127 128 5.667539 TTGATTCAAGGGTTCAACAACAA 57.332 34.783 0.00 0.00 33.70 2.83
128 129 5.867903 ATTGATTCAAGGGTTCAACAACA 57.132 34.783 5.21 0.00 33.70 3.33
129 130 6.279882 TGAATTGATTCAAGGGTTCAACAAC 58.720 36.000 10.15 0.00 43.26 3.32
148 160 2.028130 TGGTGTCAAGCCGTTTGAATT 58.972 42.857 0.00 0.00 46.85 2.17
151 163 1.464734 TTTGGTGTCAAGCCGTTTGA 58.535 45.000 0.00 0.00 43.40 2.69
153 165 4.038642 ACAATATTTGGTGTCAAGCCGTTT 59.961 37.500 0.00 0.00 33.98 3.60
154 166 3.572255 ACAATATTTGGTGTCAAGCCGTT 59.428 39.130 0.00 0.00 33.98 4.44
156 168 3.848272 ACAATATTTGGTGTCAAGCCG 57.152 42.857 0.00 0.00 33.98 5.52
166 178 4.294232 TGCACAACGACAACAATATTTGG 58.706 39.130 0.00 0.00 34.12 3.28
169 181 5.153513 GTCATGCACAACGACAACAATATT 58.846 37.500 0.00 0.00 0.00 1.28
175 187 2.031560 TCTTGTCATGCACAACGACAAC 59.968 45.455 15.11 0.00 42.95 3.32
193 205 3.896272 AGGTGACGAGGTTAGAGTTTCTT 59.104 43.478 0.00 0.00 0.00 2.52
200 212 3.265221 TCTCCTTAGGTGACGAGGTTAGA 59.735 47.826 0.00 0.00 38.96 2.10
215 227 5.125097 GGTGTAGATTTCTGTCGTCTCCTTA 59.875 44.000 0.00 0.00 0.00 2.69
245 257 2.014857 CGTTAGGATGGAGTCGACAGA 58.985 52.381 19.50 0.48 0.00 3.41
246 258 2.014857 TCGTTAGGATGGAGTCGACAG 58.985 52.381 19.50 0.00 0.00 3.51
247 259 2.118313 TCGTTAGGATGGAGTCGACA 57.882 50.000 19.50 0.00 0.00 4.35
249 261 2.439409 TGTTCGTTAGGATGGAGTCGA 58.561 47.619 0.00 0.00 0.00 4.20
264 276 5.611796 TTGATCCATCTCAAGTTTGTTCG 57.388 39.130 0.00 0.00 31.65 3.95
266 278 5.279156 GCCTTTGATCCATCTCAAGTTTGTT 60.279 40.000 0.00 0.00 36.55 2.83
279 291 0.620556 GGTCTCCTGCCTTTGATCCA 59.379 55.000 0.00 0.00 0.00 3.41
289 301 1.107114 TCTTCGAGATGGTCTCCTGC 58.893 55.000 1.66 0.00 40.34 4.85
300 313 1.404717 GGCAGTGCTTCATCTTCGAGA 60.405 52.381 16.11 0.00 0.00 4.04
348 361 3.802685 AGTGCGACTTCGGCTATTAATTC 59.197 43.478 0.02 0.00 40.23 2.17
351 364 2.536365 CAGTGCGACTTCGGCTATTAA 58.464 47.619 0.02 0.00 40.23 1.40
364 377 0.036388 GGAAGTGAATCCCAGTGCGA 60.036 55.000 0.00 0.00 33.05 5.10
393 406 0.829333 CTAGATGCCACTCCAGCAGT 59.171 55.000 0.00 0.00 44.90 4.40
397 410 1.047002 CCCTCTAGATGCCACTCCAG 58.953 60.000 0.00 0.00 0.00 3.86
398 411 0.399091 CCCCTCTAGATGCCACTCCA 60.399 60.000 0.00 0.00 0.00 3.86
403 416 1.062198 TCACATCCCCTCTAGATGCCA 60.062 52.381 0.00 0.00 44.08 4.92
421 434 0.824109 CCGACTAGCCTGTGGATTCA 59.176 55.000 0.00 0.00 0.00 2.57
422 435 1.067821 CTCCGACTAGCCTGTGGATTC 59.932 57.143 0.00 0.00 0.00 2.52
430 443 0.475044 CTAGGTCCTCCGACTAGCCT 59.525 60.000 0.00 0.00 39.15 4.58
439 452 2.025898 CTCGTTCCTTCTAGGTCCTCC 58.974 57.143 0.00 0.00 36.53 4.30
445 458 4.202070 GGTGAAGATCTCGTTCCTTCTAGG 60.202 50.000 0.00 0.00 37.69 3.02
447 460 3.700038 GGGTGAAGATCTCGTTCCTTCTA 59.300 47.826 0.00 0.00 37.69 2.10
448 461 2.498078 GGGTGAAGATCTCGTTCCTTCT 59.502 50.000 0.00 0.00 37.69 2.85
480 494 0.320421 TTTCTTCCTCTCAACGGCGG 60.320 55.000 13.24 0.00 0.00 6.13
538 780 9.471084 CAACCCTTATAAAACAACCTTACAAAG 57.529 33.333 0.00 0.00 0.00 2.77
625 873 2.885894 GTGGGGTGTTTCCGTTAAATCA 59.114 45.455 0.00 0.00 37.00 2.57
635 883 3.535280 AAAACATGTGTGGGGTGTTTC 57.465 42.857 0.00 0.00 43.14 2.78
658 906 3.666345 ACGGAGGGAGTACTACATTCT 57.334 47.619 7.57 0.00 0.00 2.40
659 907 4.430908 CAAACGGAGGGAGTACTACATTC 58.569 47.826 7.57 0.00 0.00 2.67
662 910 2.173519 CCAAACGGAGGGAGTACTACA 58.826 52.381 7.57 0.00 0.00 2.74
663 911 2.450476 TCCAAACGGAGGGAGTACTAC 58.550 52.381 0.00 0.00 0.00 2.73
665 913 2.019807 TTCCAAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 34.02 2.73
666 914 3.345508 AATTCCAAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 34.02 2.73
667 915 4.098894 AGTAATTCCAAACGGAGGGAGTA 58.901 43.478 0.00 0.00 34.02 2.59
668 916 2.910977 AGTAATTCCAAACGGAGGGAGT 59.089 45.455 0.00 0.00 34.02 3.85
669 917 3.629142 AGTAATTCCAAACGGAGGGAG 57.371 47.619 0.00 0.00 34.02 4.30
671 919 3.418047 ACAAGTAATTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
672 920 3.124636 CGACAAGTAATTCCAAACGGAGG 59.875 47.826 0.00 0.00 32.88 4.30
673 921 3.424433 GCGACAAGTAATTCCAAACGGAG 60.424 47.826 0.00 0.00 32.88 4.63
674 922 2.481185 GCGACAAGTAATTCCAAACGGA 59.519 45.455 0.00 0.00 0.00 4.69
675 923 2.224549 TGCGACAAGTAATTCCAAACGG 59.775 45.455 0.00 0.00 0.00 4.44
676 924 3.185594 TCTGCGACAAGTAATTCCAAACG 59.814 43.478 0.00 0.00 0.00 3.60
677 925 4.742438 TCTGCGACAAGTAATTCCAAAC 57.258 40.909 0.00 0.00 0.00 2.93
678 926 5.759506 TTTCTGCGACAAGTAATTCCAAA 57.240 34.783 0.00 0.00 0.00 3.28
679 927 5.335583 CCATTTCTGCGACAAGTAATTCCAA 60.336 40.000 0.00 0.00 0.00 3.53
680 928 4.155826 CCATTTCTGCGACAAGTAATTCCA 59.844 41.667 0.00 0.00 0.00 3.53
681 929 4.394920 TCCATTTCTGCGACAAGTAATTCC 59.605 41.667 0.00 0.00 0.00 3.01
682 930 5.545658 TCCATTTCTGCGACAAGTAATTC 57.454 39.130 0.00 0.00 0.00 2.17
683 931 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
684 932 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
685 933 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
686 934 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
687 935 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
688 936 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
689 937 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
690 938 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
691 939 5.631512 GTCTAGATACATCCATTTCTGCGAC 59.368 44.000 0.00 0.00 0.00 5.19
692 940 5.562890 CGTCTAGATACATCCATTTCTGCGA 60.563 44.000 0.00 0.00 0.00 5.10
693 941 4.618912 CGTCTAGATACATCCATTTCTGCG 59.381 45.833 0.00 0.00 0.00 5.18
694 942 5.533482 ACGTCTAGATACATCCATTTCTGC 58.467 41.667 0.00 0.00 0.00 4.26
695 943 9.698309 AAATACGTCTAGATACATCCATTTCTG 57.302 33.333 0.00 0.00 0.00 3.02
736 984 9.878667 TTCGTAATTACTTGTCTTGGATATGAA 57.121 29.630 13.56 2.20 0.00 2.57
737 985 9.309516 GTTCGTAATTACTTGTCTTGGATATGA 57.690 33.333 13.56 0.00 0.00 2.15
738 986 8.266682 CGTTCGTAATTACTTGTCTTGGATATG 58.733 37.037 13.56 0.00 0.00 1.78
739 987 7.437267 CCGTTCGTAATTACTTGTCTTGGATAT 59.563 37.037 13.56 0.00 0.00 1.63
740 988 6.753279 CCGTTCGTAATTACTTGTCTTGGATA 59.247 38.462 13.56 0.00 0.00 2.59
741 989 5.579511 CCGTTCGTAATTACTTGTCTTGGAT 59.420 40.000 13.56 0.00 0.00 3.41
742 990 4.925054 CCGTTCGTAATTACTTGTCTTGGA 59.075 41.667 13.56 0.00 0.00 3.53
743 991 4.925054 TCCGTTCGTAATTACTTGTCTTGG 59.075 41.667 13.56 6.43 0.00 3.61
744 992 5.061808 CCTCCGTTCGTAATTACTTGTCTTG 59.938 44.000 13.56 0.00 0.00 3.02
745 993 5.166398 CCTCCGTTCGTAATTACTTGTCTT 58.834 41.667 13.56 0.00 0.00 3.01
746 994 4.381292 CCCTCCGTTCGTAATTACTTGTCT 60.381 45.833 13.56 0.00 0.00 3.41
747 995 3.861689 CCCTCCGTTCGTAATTACTTGTC 59.138 47.826 13.56 1.53 0.00 3.18
748 996 3.511146 TCCCTCCGTTCGTAATTACTTGT 59.489 43.478 13.56 0.00 0.00 3.16
749 997 4.110482 CTCCCTCCGTTCGTAATTACTTG 58.890 47.826 13.56 0.00 0.00 3.16
750 998 3.766051 ACTCCCTCCGTTCGTAATTACTT 59.234 43.478 13.56 0.00 0.00 2.24
751 999 3.359950 ACTCCCTCCGTTCGTAATTACT 58.640 45.455 13.56 0.00 0.00 2.24
752 1000 3.790152 ACTCCCTCCGTTCGTAATTAC 57.210 47.619 5.47 5.47 0.00 1.89
753 1001 6.716628 ACATATACTCCCTCCGTTCGTAATTA 59.283 38.462 0.00 0.00 0.00 1.40
754 1002 5.537674 ACATATACTCCCTCCGTTCGTAATT 59.462 40.000 0.00 0.00 0.00 1.40
755 1003 5.075493 ACATATACTCCCTCCGTTCGTAAT 58.925 41.667 0.00 0.00 0.00 1.89
756 1004 4.464008 ACATATACTCCCTCCGTTCGTAA 58.536 43.478 0.00 0.00 0.00 3.18
757 1005 4.067896 GACATATACTCCCTCCGTTCGTA 58.932 47.826 0.00 0.00 0.00 3.43
758 1006 2.883386 GACATATACTCCCTCCGTTCGT 59.117 50.000 0.00 0.00 0.00 3.85
759 1007 2.882761 TGACATATACTCCCTCCGTTCG 59.117 50.000 0.00 0.00 0.00 3.95
760 1008 3.635373 TGTGACATATACTCCCTCCGTTC 59.365 47.826 0.00 0.00 0.00 3.95
761 1009 3.383825 GTGTGACATATACTCCCTCCGTT 59.616 47.826 0.00 0.00 0.00 4.44
762 1010 2.957006 GTGTGACATATACTCCCTCCGT 59.043 50.000 0.00 0.00 0.00 4.69
763 1011 2.956333 TGTGTGACATATACTCCCTCCG 59.044 50.000 0.00 0.00 0.00 4.63
764 1012 3.704566 TGTGTGTGACATATACTCCCTCC 59.295 47.826 0.00 0.00 0.00 4.30
765 1013 5.163405 ACATGTGTGTGACATATACTCCCTC 60.163 44.000 0.00 0.00 43.96 4.30
766 1014 4.716784 ACATGTGTGTGACATATACTCCCT 59.283 41.667 0.00 0.00 43.96 4.20
767 1015 5.023533 ACATGTGTGTGACATATACTCCC 57.976 43.478 0.00 0.00 43.96 4.30
768 1016 6.106003 TCAACATGTGTGTGACATATACTCC 58.894 40.000 0.00 0.00 43.96 3.85
769 1017 7.035612 TCTCAACATGTGTGTGACATATACTC 58.964 38.462 0.00 0.00 43.96 2.59
770 1018 6.935167 TCTCAACATGTGTGTGACATATACT 58.065 36.000 0.00 0.00 43.96 2.12
801 1049 8.308931 GGGGAACATATTAATATCGCGGATATA 58.691 37.037 6.13 0.00 34.57 0.86
802 1050 7.016268 AGGGGAACATATTAATATCGCGGATAT 59.984 37.037 6.13 5.76 36.89 1.63
803 1051 6.325545 AGGGGAACATATTAATATCGCGGATA 59.674 38.462 6.13 3.33 0.00 2.59
804 1052 5.130477 AGGGGAACATATTAATATCGCGGAT 59.870 40.000 6.13 0.75 0.00 4.18
805 1053 4.468510 AGGGGAACATATTAATATCGCGGA 59.531 41.667 6.13 0.00 0.00 5.54
806 1054 4.766375 AGGGGAACATATTAATATCGCGG 58.234 43.478 6.13 0.00 0.00 6.46
807 1055 5.642063 ACAAGGGGAACATATTAATATCGCG 59.358 40.000 0.00 0.00 0.00 5.87
808 1056 6.183360 CGACAAGGGGAACATATTAATATCGC 60.183 42.308 4.93 4.39 0.00 4.58
809 1057 6.312918 CCGACAAGGGGAACATATTAATATCG 59.687 42.308 4.93 2.97 35.97 2.92
810 1058 7.391620 TCCGACAAGGGGAACATATTAATATC 58.608 38.462 4.93 0.00 41.52 1.63
811 1059 7.324388 TCCGACAAGGGGAACATATTAATAT 57.676 36.000 1.91 1.91 41.52 1.28
812 1060 6.750660 TCCGACAAGGGGAACATATTAATA 57.249 37.500 0.00 0.00 41.52 0.98
813 1061 5.640158 TCCGACAAGGGGAACATATTAAT 57.360 39.130 0.00 0.00 41.52 1.40
814 1062 5.438698 TTCCGACAAGGGGAACATATTAA 57.561 39.130 0.00 0.00 38.60 1.40
815 1063 5.438698 TTTCCGACAAGGGGAACATATTA 57.561 39.130 0.00 0.00 43.00 0.98
816 1064 4.310022 TTTCCGACAAGGGGAACATATT 57.690 40.909 0.00 0.00 43.00 1.28
817 1065 4.310022 TTTTCCGACAAGGGGAACATAT 57.690 40.909 0.00 0.00 43.00 1.78
818 1066 3.791953 TTTTCCGACAAGGGGAACATA 57.208 42.857 0.00 0.00 43.00 2.29
819 1067 2.668144 TTTTCCGACAAGGGGAACAT 57.332 45.000 0.00 0.00 43.00 2.71
820 1068 2.438800 TTTTTCCGACAAGGGGAACA 57.561 45.000 0.00 0.00 43.00 3.18
821 1069 2.626266 ACATTTTTCCGACAAGGGGAAC 59.374 45.455 0.00 0.00 43.00 3.62
822 1070 2.952116 ACATTTTTCCGACAAGGGGAA 58.048 42.857 0.00 0.00 41.66 3.97
823 1071 2.668144 ACATTTTTCCGACAAGGGGA 57.332 45.000 0.00 0.00 41.52 4.81
824 1072 3.068873 TCAAACATTTTTCCGACAAGGGG 59.931 43.478 0.00 0.00 41.52 4.79
825 1073 4.037446 TCTCAAACATTTTTCCGACAAGGG 59.963 41.667 0.00 0.00 41.52 3.95
826 1074 5.008613 TCTCTCAAACATTTTTCCGACAAGG 59.991 40.000 0.00 0.00 42.97 3.61
827 1075 6.060028 TCTCTCAAACATTTTTCCGACAAG 57.940 37.500 0.00 0.00 0.00 3.16
828 1076 6.443934 TTCTCTCAAACATTTTTCCGACAA 57.556 33.333 0.00 0.00 0.00 3.18
829 1077 6.443934 TTTCTCTCAAACATTTTTCCGACA 57.556 33.333 0.00 0.00 0.00 4.35
830 1078 7.138736 TCATTTCTCTCAAACATTTTTCCGAC 58.861 34.615 0.00 0.00 0.00 4.79
831 1079 7.270757 TCATTTCTCTCAAACATTTTTCCGA 57.729 32.000 0.00 0.00 0.00 4.55
832 1080 8.524870 AATCATTTCTCTCAAACATTTTTCCG 57.475 30.769 0.00 0.00 0.00 4.30
840 1088 9.506018 TCAGATTGTAATCATTTCTCTCAAACA 57.494 29.630 7.30 0.00 37.89 2.83
853 1101 9.860898 CGGATAGATGTATTCAGATTGTAATCA 57.139 33.333 7.30 0.00 37.89 2.57
854 1102 8.812329 GCGGATAGATGTATTCAGATTGTAATC 58.188 37.037 0.00 0.00 35.64 1.75
890 1139 6.577427 GCGACGATATTCAGTTGTTTTTCTTT 59.423 34.615 0.00 0.00 0.00 2.52
891 1140 6.077838 GCGACGATATTCAGTTGTTTTTCTT 58.922 36.000 0.00 0.00 0.00 2.52
892 1141 5.618561 GCGACGATATTCAGTTGTTTTTCT 58.381 37.500 0.00 0.00 0.00 2.52
893 1142 4.487408 CGCGACGATATTCAGTTGTTTTTC 59.513 41.667 0.00 0.00 0.00 2.29
1247 1520 2.908073 GCAAGCACACCAACCCTCG 61.908 63.158 0.00 0.00 0.00 4.63
1269 1542 2.759973 TCGAGGGGCTGATTCGCT 60.760 61.111 0.00 0.00 34.52 4.93
1308 1581 1.745320 AATCCCCCGAATCGACCGAG 61.745 60.000 3.36 0.00 0.00 4.63
1341 1614 5.435291 CCCCAGCCAAATTTATGCAAAATA 58.565 37.500 12.74 0.00 0.00 1.40
1384 1665 2.755650 CGCTCTTACCACAAGTCAACT 58.244 47.619 0.00 0.00 0.00 3.16
1392 1673 1.812686 AACTCCGCGCTCTTACCACA 61.813 55.000 5.56 0.00 0.00 4.17
1398 1679 0.669625 GTAACCAACTCCGCGCTCTT 60.670 55.000 5.56 0.00 0.00 2.85
1422 1703 4.632538 AATTTAAAGGGCGGAGAAATCG 57.367 40.909 0.00 0.00 0.00 3.34
1617 1898 6.013725 ACTGTCTTAGTTGGTCATTGTATCCA 60.014 38.462 0.00 0.00 35.67 3.41
1618 1899 6.407202 ACTGTCTTAGTTGGTCATTGTATCC 58.593 40.000 0.00 0.00 35.67 2.59
1682 1964 4.941263 TGGGTCACTTAGATGTGCAATAAC 59.059 41.667 0.00 0.00 37.81 1.89
1771 2053 6.356556 ACTTAGATGTGCAATACTTATGGCA 58.643 36.000 0.00 0.00 40.19 4.92
1772 2054 6.073003 GGACTTAGATGTGCAATACTTATGGC 60.073 42.308 0.00 0.00 33.16 4.40
1773 2055 7.220030 AGGACTTAGATGTGCAATACTTATGG 58.780 38.462 0.00 0.00 0.00 2.74
1774 2056 9.935241 ATAGGACTTAGATGTGCAATACTTATG 57.065 33.333 0.00 0.00 0.00 1.90
1778 2060 9.314133 TGATATAGGACTTAGATGTGCAATACT 57.686 33.333 0.00 0.00 0.00 2.12
1783 2065 9.479549 TGATATGATATAGGACTTAGATGTGCA 57.520 33.333 0.00 0.00 0.00 4.57
1802 2084 9.987272 AATCTCAACGTAAGATCAATGATATGA 57.013 29.630 12.34 0.00 43.62 2.15
1804 2086 9.987272 TGAATCTCAACGTAAGATCAATGATAT 57.013 29.630 12.34 0.00 43.62 1.63
1805 2087 9.987272 ATGAATCTCAACGTAAGATCAATGATA 57.013 29.630 12.34 0.00 43.62 2.15
1806 2088 8.771766 CATGAATCTCAACGTAAGATCAATGAT 58.228 33.333 18.97 0.00 43.62 2.45
1807 2089 7.765819 ACATGAATCTCAACGTAAGATCAATGA 59.234 33.333 24.43 10.55 43.62 2.57
1808 2090 7.849515 CACATGAATCTCAACGTAAGATCAATG 59.150 37.037 20.43 20.43 43.62 2.82
1809 2091 7.011763 CCACATGAATCTCAACGTAAGATCAAT 59.988 37.037 12.34 7.67 43.62 2.57
1810 2092 6.313658 CCACATGAATCTCAACGTAAGATCAA 59.686 38.462 12.34 6.07 43.62 2.57
1811 2093 5.812127 CCACATGAATCTCAACGTAAGATCA 59.188 40.000 12.34 11.92 43.62 2.92
1812 2094 6.042777 TCCACATGAATCTCAACGTAAGATC 58.957 40.000 12.34 7.96 43.62 2.75
1813 2095 5.977635 TCCACATGAATCTCAACGTAAGAT 58.022 37.500 0.00 7.39 43.62 2.40
1814 2096 5.400066 TCCACATGAATCTCAACGTAAGA 57.600 39.130 0.00 3.32 43.62 2.10
1816 2098 8.731275 AAATATCCACATGAATCTCAACGTAA 57.269 30.769 0.00 0.00 0.00 3.18
1817 2099 8.731275 AAAATATCCACATGAATCTCAACGTA 57.269 30.769 0.00 0.00 0.00 3.57
1818 2100 7.554118 AGAAAATATCCACATGAATCTCAACGT 59.446 33.333 0.00 0.00 0.00 3.99
1819 2101 7.923888 AGAAAATATCCACATGAATCTCAACG 58.076 34.615 0.00 0.00 0.00 4.10
1852 2134 6.696411 TCAAGCACAAAGAGGAAAAGAAAAA 58.304 32.000 0.00 0.00 0.00 1.94
1853 2135 6.279513 TCAAGCACAAAGAGGAAAAGAAAA 57.720 33.333 0.00 0.00 0.00 2.29
1854 2136 5.913137 TCAAGCACAAAGAGGAAAAGAAA 57.087 34.783 0.00 0.00 0.00 2.52
1855 2137 6.096705 TGAATCAAGCACAAAGAGGAAAAGAA 59.903 34.615 0.00 0.00 0.00 2.52
1856 2138 5.593909 TGAATCAAGCACAAAGAGGAAAAGA 59.406 36.000 0.00 0.00 0.00 2.52
1857 2139 5.689068 GTGAATCAAGCACAAAGAGGAAAAG 59.311 40.000 0.00 0.00 36.31 2.27
1858 2140 5.360714 AGTGAATCAAGCACAAAGAGGAAAA 59.639 36.000 0.00 0.00 38.70 2.29
1859 2141 4.889409 AGTGAATCAAGCACAAAGAGGAAA 59.111 37.500 0.00 0.00 38.70 3.13
1860 2142 4.464008 AGTGAATCAAGCACAAAGAGGAA 58.536 39.130 0.00 0.00 38.70 3.36
1861 2143 4.067896 GAGTGAATCAAGCACAAAGAGGA 58.932 43.478 0.00 0.00 38.70 3.71
1862 2144 3.817084 TGAGTGAATCAAGCACAAAGAGG 59.183 43.478 0.00 0.00 38.70 3.69
1863 2145 4.514441 AGTGAGTGAATCAAGCACAAAGAG 59.486 41.667 15.75 0.00 40.43 2.85
1864 2146 4.454678 AGTGAGTGAATCAAGCACAAAGA 58.545 39.130 15.75 0.00 40.43 2.52
1865 2147 4.825546 AGTGAGTGAATCAAGCACAAAG 57.174 40.909 15.75 0.00 40.43 2.77
1866 2148 6.054941 TCTAAGTGAGTGAATCAAGCACAAA 58.945 36.000 15.75 5.63 40.43 2.83
1867 2149 5.610398 TCTAAGTGAGTGAATCAAGCACAA 58.390 37.500 15.75 5.89 40.43 3.33
1868 2150 5.213891 TCTAAGTGAGTGAATCAAGCACA 57.786 39.130 15.75 0.00 40.43 4.57
1869 2151 5.641209 ACATCTAAGTGAGTGAATCAAGCAC 59.359 40.000 8.20 8.20 40.43 4.40
1870 2152 5.640783 CACATCTAAGTGAGTGAATCAAGCA 59.359 40.000 0.00 0.00 42.05 3.91
1871 2153 5.641209 ACACATCTAAGTGAGTGAATCAAGC 59.359 40.000 0.57 0.00 42.05 4.01
1872 2154 8.763049 TTACACATCTAAGTGAGTGAATCAAG 57.237 34.615 0.57 0.00 42.05 3.02
1881 2163 9.672086 GCTCTAGTTATTACACATCTAAGTGAG 57.328 37.037 0.57 0.00 42.05 3.51
1882 2164 9.185680 TGCTCTAGTTATTACACATCTAAGTGA 57.814 33.333 0.57 0.00 42.05 3.41
1883 2165 9.239002 GTGCTCTAGTTATTACACATCTAAGTG 57.761 37.037 0.00 0.00 44.93 3.16
1884 2166 8.967918 TGTGCTCTAGTTATTACACATCTAAGT 58.032 33.333 0.00 0.00 33.41 2.24
1885 2167 9.973450 ATGTGCTCTAGTTATTACACATCTAAG 57.027 33.333 0.00 0.00 43.27 2.18
1909 2191 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
1910 2192 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
1911 2193 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
1912 2194 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
1913 2195 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
1914 2196 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
1915 2197 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
1916 2198 0.840288 TGGGTGTGTCTAGGGCACAT 60.840 55.000 18.92 0.00 46.66 3.21
1917 2199 1.460497 TGGGTGTGTCTAGGGCACA 60.460 57.895 14.22 14.22 43.60 4.57
1918 2200 1.192146 TCTGGGTGTGTCTAGGGCAC 61.192 60.000 10.20 10.20 37.37 5.01
1919 2201 0.472925 TTCTGGGTGTGTCTAGGGCA 60.473 55.000 0.00 0.00 0.00 5.36
1920 2202 0.690762 TTTCTGGGTGTGTCTAGGGC 59.309 55.000 0.00 0.00 0.00 5.19
1921 2203 2.257207 TCTTTCTGGGTGTGTCTAGGG 58.743 52.381 0.00 0.00 0.00 3.53
1922 2204 4.351874 TTTCTTTCTGGGTGTGTCTAGG 57.648 45.455 0.00 0.00 0.00 3.02
1923 2205 6.371825 GGTATTTTCTTTCTGGGTGTGTCTAG 59.628 42.308 0.00 0.00 0.00 2.43
1924 2206 6.235664 GGTATTTTCTTTCTGGGTGTGTCTA 58.764 40.000 0.00 0.00 0.00 2.59
1925 2207 5.070685 GGTATTTTCTTTCTGGGTGTGTCT 58.929 41.667 0.00 0.00 0.00 3.41
1926 2208 4.217767 GGGTATTTTCTTTCTGGGTGTGTC 59.782 45.833 0.00 0.00 0.00 3.67
1927 2209 4.149598 GGGTATTTTCTTTCTGGGTGTGT 58.850 43.478 0.00 0.00 0.00 3.72
1928 2210 4.022329 GTGGGTATTTTCTTTCTGGGTGTG 60.022 45.833 0.00 0.00 0.00 3.82
1929 2211 4.149598 GTGGGTATTTTCTTTCTGGGTGT 58.850 43.478 0.00 0.00 0.00 4.16
1930 2212 4.022329 GTGTGGGTATTTTCTTTCTGGGTG 60.022 45.833 0.00 0.00 0.00 4.61
1931 2213 4.149598 GTGTGGGTATTTTCTTTCTGGGT 58.850 43.478 0.00 0.00 0.00 4.51
1932 2214 3.190535 CGTGTGGGTATTTTCTTTCTGGG 59.809 47.826 0.00 0.00 0.00 4.45
1933 2215 4.069304 TCGTGTGGGTATTTTCTTTCTGG 58.931 43.478 0.00 0.00 0.00 3.86
1934 2216 5.682943 TTCGTGTGGGTATTTTCTTTCTG 57.317 39.130 0.00 0.00 0.00 3.02
1935 2217 6.238648 AGATTCGTGTGGGTATTTTCTTTCT 58.761 36.000 0.00 0.00 0.00 2.52
1936 2218 6.403309 GGAGATTCGTGTGGGTATTTTCTTTC 60.403 42.308 0.00 0.00 0.00 2.62
1937 2219 5.414765 GGAGATTCGTGTGGGTATTTTCTTT 59.585 40.000 0.00 0.00 0.00 2.52
1938 2220 4.941873 GGAGATTCGTGTGGGTATTTTCTT 59.058 41.667 0.00 0.00 0.00 2.52
1939 2221 4.514401 GGAGATTCGTGTGGGTATTTTCT 58.486 43.478 0.00 0.00 0.00 2.52
1946 2228 3.787394 ACGGAGATTCGTGTGGGT 58.213 55.556 0.00 0.00 42.21 4.51
1962 2244 9.579768 CTAAGTCCTATATCACTGATATTGCAC 57.420 37.037 15.33 10.56 36.70 4.57
1971 2253 6.986250 TGCACATCTAAGTCCTATATCACTG 58.014 40.000 0.00 0.00 0.00 3.66
2033 2380 8.997323 CAATGAGATCCTGGTAGTATCAAATTC 58.003 37.037 0.00 0.00 0.00 2.17
2059 2406 3.709987 AGCAGCATCAAGTTGAAACAAC 58.290 40.909 10.14 6.53 0.00 3.32
2082 2429 1.271102 TCATTTTTACAAGGGCGTGGC 59.729 47.619 0.00 0.00 0.00 5.01
2132 2479 9.350357 CTGAACAAGATTAAAATTGATCAGGTG 57.650 33.333 22.42 9.20 45.33 4.00
2624 3126 0.614979 TAGGTCAGTGACTCCCCTGC 60.615 60.000 22.18 4.40 32.47 4.85
2682 3184 0.723790 CAGCTGAAGTTGAAAGCGCG 60.724 55.000 8.42 0.00 41.88 6.86
2691 3193 4.304110 CATCAACATTTGCAGCTGAAGTT 58.696 39.130 20.43 4.75 0.00 2.66
2755 3257 2.713011 CAGTTAGCGAATGAAGCATGC 58.287 47.619 10.51 10.51 37.01 4.06
2926 3428 5.154215 CATTGCTTGCTAGAAGCTTAGAC 57.846 43.478 20.35 0.00 42.97 2.59
3219 3724 9.976511 GTACTAGCAATGGTCATGTATACTTTA 57.023 33.333 4.17 0.00 0.00 1.85
3224 3729 7.597288 ACAGTACTAGCAATGGTCATGTATA 57.403 36.000 0.00 0.00 0.00 1.47
3231 3736 8.943909 AAGTAATAACAGTACTAGCAATGGTC 57.056 34.615 0.00 0.00 31.48 4.02
3397 3904 4.641396 TCCCTCTTGACTATTGTTGTGTG 58.359 43.478 0.00 0.00 0.00 3.82
3401 3908 5.165961 TCCTTCCCTCTTGACTATTGTTG 57.834 43.478 0.00 0.00 0.00 3.33
3457 3964 6.472686 AGGGAGTACAAACTACAGATGATC 57.527 41.667 0.00 0.00 38.45 2.92
3550 4062 3.685836 AGAAAACAGTGCGGTTGTTAC 57.314 42.857 0.00 0.82 37.77 2.50
3566 4078 9.150348 CAAAGAGGAACTTAAAAGCAAAAGAAA 57.850 29.630 0.00 0.00 41.55 2.52
3838 4358 6.484308 TGTTGGTGTAGTTAGAAGGCTAAAAC 59.516 38.462 0.00 0.00 38.28 2.43
3854 4374 4.157849 TGACTGGTGAAATGTTGGTGTA 57.842 40.909 0.00 0.00 0.00 2.90
3897 4417 3.149196 GCCAAGAGGAGTGATTGACAAA 58.851 45.455 0.00 0.00 36.89 2.83
3969 4493 6.338937 AGGTACATTAGAACTTAGAAAGGCG 58.661 40.000 0.00 0.00 0.00 5.52
4082 4606 2.031495 AGTCCACTCCTTGCTAGGTT 57.969 50.000 14.12 0.00 42.60 3.50
4086 4610 6.121776 TGATTTTTAGTCCACTCCTTGCTA 57.878 37.500 0.00 0.00 0.00 3.49
4225 4749 5.240844 TGAATGATCTAAGGCATGCTGAATG 59.759 40.000 18.92 4.88 39.49 2.67
4241 4765 5.001874 TCATCTAAGGCATGCTGAATGATC 58.998 41.667 18.92 0.00 38.72 2.92
4242 4766 4.760715 GTCATCTAAGGCATGCTGAATGAT 59.239 41.667 18.92 11.90 38.72 2.45
4243 4767 4.132336 GTCATCTAAGGCATGCTGAATGA 58.868 43.478 18.92 15.61 38.72 2.57
4244 4768 4.135306 AGTCATCTAAGGCATGCTGAATG 58.865 43.478 18.92 13.73 39.49 2.67
4245 4769 4.434545 AGTCATCTAAGGCATGCTGAAT 57.565 40.909 18.92 8.58 0.00 2.57
4246 4770 3.920231 AGTCATCTAAGGCATGCTGAA 57.080 42.857 18.92 1.85 0.00 3.02
4247 4771 3.920231 AAGTCATCTAAGGCATGCTGA 57.080 42.857 18.92 9.38 0.00 4.26
4248 4772 6.441093 TTTTAAGTCATCTAAGGCATGCTG 57.559 37.500 18.92 6.85 0.00 4.41
4249 4773 5.591877 CCTTTTAAGTCATCTAAGGCATGCT 59.408 40.000 18.92 0.24 0.00 3.79
4250 4774 5.825507 CCTTTTAAGTCATCTAAGGCATGC 58.174 41.667 9.90 9.90 0.00 4.06
4255 4779 7.308435 CACAAAGCCTTTTAAGTCATCTAAGG 58.692 38.462 0.00 0.00 38.68 2.69
4256 4780 6.803807 GCACAAAGCCTTTTAAGTCATCTAAG 59.196 38.462 0.00 0.00 37.23 2.18
4257 4781 6.677913 GCACAAAGCCTTTTAAGTCATCTAA 58.322 36.000 0.00 0.00 37.23 2.10
4258 4782 6.254281 GCACAAAGCCTTTTAAGTCATCTA 57.746 37.500 0.00 0.00 37.23 1.98
4259 4783 5.126396 GCACAAAGCCTTTTAAGTCATCT 57.874 39.130 0.00 0.00 37.23 2.90
4344 4868 2.047061 AGATTTAGGCTATGGCGGACA 58.953 47.619 0.00 0.00 39.81 4.02
4423 4947 3.181526 GCAAGAGATTGTACTTGAGCACG 60.182 47.826 0.00 0.00 43.98 5.34
4428 4952 9.844790 CAAATTAATGCAAGAGATTGTACTTGA 57.155 29.630 0.00 0.00 43.98 3.02
4436 4962 7.121168 TCGGAAGTCAAATTAATGCAAGAGATT 59.879 33.333 0.00 0.00 0.00 2.40
4442 4968 4.157656 CCCTCGGAAGTCAAATTAATGCAA 59.842 41.667 0.00 0.00 0.00 4.08
4591 5264 7.826252 AGCAGAATAACACAAACATACAGAGAT 59.174 33.333 0.00 0.00 0.00 2.75
4602 5275 5.560724 AGGAAGCTAGCAGAATAACACAAA 58.439 37.500 18.83 0.00 0.00 2.83
4641 5314 7.465353 TGTATCTCTTGCCAAAATCATTCAA 57.535 32.000 0.00 0.00 0.00 2.69
4844 5519 3.807622 GTCGATTCAATTATCAGCGGGAA 59.192 43.478 0.00 0.00 0.00 3.97
4848 5523 5.835911 ATCTGTCGATTCAATTATCAGCG 57.164 39.130 0.00 0.00 0.00 5.18
4885 5563 4.098847 TGCATTGCCAGCATGTCA 57.901 50.000 6.12 0.00 37.02 3.58
4891 5569 3.781079 TGTTAGTTATGCATTGCCAGC 57.219 42.857 3.54 0.00 0.00 4.85
4913 5591 6.736110 AGTTCAAGTACACCAAACCTACTA 57.264 37.500 0.00 0.00 0.00 1.82
5249 5933 1.221635 CCTGGTCCCAACCCATGATA 58.778 55.000 0.00 0.00 45.83 2.15
5415 6099 1.527034 CCACACCTCCACACATTCAG 58.473 55.000 0.00 0.00 0.00 3.02
5429 6114 2.297701 ACACAGTTCAACATCCCACAC 58.702 47.619 0.00 0.00 0.00 3.82
5457 6142 5.420421 TCTGAGAGTTCCCTAGTTTGATCAG 59.580 44.000 0.00 0.00 33.44 2.90
5516 6207 3.706086 ACAAGAGGTTTCATGGTGCTTTT 59.294 39.130 0.00 0.00 0.00 2.27
5556 6247 6.870965 AGAATAGACATTCGCCATGAATCTAC 59.129 38.462 0.00 0.00 45.59 2.59
5635 6326 4.276678 CCAGACATTTGAATCACACACAGT 59.723 41.667 0.00 0.00 0.00 3.55
5639 6330 4.082625 GCATCCAGACATTTGAATCACACA 60.083 41.667 0.00 0.00 0.00 3.72
5702 6393 2.432456 TTGCTGTAGCGCACTCCG 60.432 61.111 11.47 0.00 45.83 4.63
5708 6399 4.771684 CAATGGTTGCTGTAGCGC 57.228 55.556 0.00 0.00 45.83 5.92
5784 6475 1.268539 CGTTGGTTGTTCAAGTGGAGC 60.269 52.381 0.00 0.00 0.00 4.70
5828 6525 5.005094 GCCCCTGTGTATAGTGTTTTGTTA 58.995 41.667 0.00 0.00 0.00 2.41
5845 6542 3.252284 ATCGCCCCATAGCCCCTG 61.252 66.667 0.00 0.00 0.00 4.45
5985 6686 2.828520 TGGTTCTTTGTGGTTCTTTGCA 59.171 40.909 0.00 0.00 0.00 4.08
6170 6871 2.065799 AGGAACCCAAGGACAATCACT 58.934 47.619 0.00 0.00 0.00 3.41
6284 6985 9.308000 TCTTGTTATAAAACTGAATCAACCCAT 57.692 29.630 0.00 0.00 36.51 4.00
6285 6986 8.698973 TCTTGTTATAAAACTGAATCAACCCA 57.301 30.769 0.00 0.00 36.51 4.51
6286 6987 9.573133 CATCTTGTTATAAAACTGAATCAACCC 57.427 33.333 0.00 0.00 36.51 4.11
6291 6992 9.455847 GGCATCATCTTGTTATAAAACTGAATC 57.544 33.333 0.00 0.00 36.51 2.52
6292 6993 8.970020 TGGCATCATCTTGTTATAAAACTGAAT 58.030 29.630 0.00 0.00 36.51 2.57
6293 6994 8.243426 GTGGCATCATCTTGTTATAAAACTGAA 58.757 33.333 0.00 0.00 36.51 3.02
6372 7084 7.410407 GCGCATTTTGGTCACTTTATTAAGTTC 60.410 37.037 0.30 0.00 41.85 3.01
6381 7093 2.100584 TCAAGCGCATTTTGGTCACTTT 59.899 40.909 11.47 0.00 0.00 2.66
6432 7146 2.104451 CTGGCTAGCCACATTCAGATCT 59.896 50.000 32.88 0.00 41.89 2.75
6595 7310 2.512692 TGCCATTTGCCTGTAGTGAT 57.487 45.000 0.00 0.00 40.16 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.