Multiple sequence alignment - TraesCS6A01G131300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G131300 | chr6A | 100.000 | 6600 | 0 | 0 | 1 | 6600 | 103765461 | 103758862 | 0.000000e+00 | 12189.0 |
1 | TraesCS6A01G131300 | chr6D | 93.852 | 2391 | 99 | 18 | 1123 | 3479 | 86148286 | 86145910 | 0.000000e+00 | 3557.0 |
2 | TraesCS6A01G131300 | chr6D | 95.165 | 1634 | 34 | 18 | 3561 | 5154 | 86145911 | 86144283 | 0.000000e+00 | 2538.0 |
3 | TraesCS6A01G131300 | chr6D | 92.045 | 1433 | 46 | 16 | 5181 | 6600 | 86144211 | 86142834 | 0.000000e+00 | 1953.0 |
4 | TraesCS6A01G131300 | chr6D | 79.333 | 1050 | 195 | 20 | 62 | 1101 | 423002280 | 423001243 | 0.000000e+00 | 717.0 |
5 | TraesCS6A01G131300 | chr6D | 93.000 | 100 | 6 | 1 | 3473 | 3572 | 114587803 | 114587705 | 1.920000e-30 | 145.0 |
6 | TraesCS6A01G131300 | chr6D | 88.793 | 116 | 11 | 2 | 3467 | 3581 | 255817387 | 255817273 | 2.480000e-29 | 141.0 |
7 | TraesCS6A01G131300 | chr6B | 94.572 | 2174 | 90 | 9 | 1318 | 3479 | 163235283 | 163233126 | 0.000000e+00 | 3336.0 |
8 | TraesCS6A01G131300 | chr6B | 93.754 | 1617 | 60 | 19 | 3561 | 5142 | 163233127 | 163231517 | 0.000000e+00 | 2388.0 |
9 | TraesCS6A01G131300 | chr6B | 94.641 | 765 | 28 | 5 | 5181 | 5936 | 163231420 | 163230660 | 0.000000e+00 | 1173.0 |
10 | TraesCS6A01G131300 | chr6B | 91.556 | 675 | 11 | 12 | 5928 | 6600 | 163230635 | 163230005 | 0.000000e+00 | 889.0 |
11 | TraesCS6A01G131300 | chr6B | 90.244 | 164 | 7 | 3 | 1121 | 1284 | 163235778 | 163235624 | 8.680000e-49 | 206.0 |
12 | TraesCS6A01G131300 | chr5A | 90.152 | 985 | 63 | 15 | 4933 | 5906 | 323083803 | 323084764 | 0.000000e+00 | 1251.0 |
13 | TraesCS6A01G131300 | chr4A | 90.164 | 976 | 63 | 11 | 4933 | 5898 | 113485800 | 113486752 | 0.000000e+00 | 1240.0 |
14 | TraesCS6A01G131300 | chr1A | 88.618 | 861 | 97 | 1 | 161 | 1020 | 520827215 | 520826355 | 0.000000e+00 | 1046.0 |
15 | TraesCS6A01G131300 | chr3A | 91.712 | 736 | 59 | 2 | 1 | 735 | 46983566 | 46984300 | 0.000000e+00 | 1020.0 |
16 | TraesCS6A01G131300 | chr2B | 79.126 | 1030 | 196 | 18 | 84 | 1101 | 526402144 | 526403166 | 0.000000e+00 | 693.0 |
17 | TraesCS6A01G131300 | chr2B | 88.085 | 235 | 27 | 1 | 1506 | 1740 | 613042945 | 613042712 | 1.810000e-70 | 278.0 |
18 | TraesCS6A01G131300 | chr3D | 89.368 | 348 | 31 | 2 | 1450 | 1797 | 420473709 | 420473368 | 3.660000e-117 | 433.0 |
19 | TraesCS6A01G131300 | chr3D | 88.596 | 114 | 9 | 3 | 3451 | 3563 | 312907617 | 312907507 | 1.150000e-27 | 135.0 |
20 | TraesCS6A01G131300 | chr7B | 81.545 | 466 | 75 | 8 | 3928 | 4388 | 594418883 | 594418424 | 2.250000e-99 | 374.0 |
21 | TraesCS6A01G131300 | chr7B | 86.207 | 232 | 31 | 1 | 1506 | 1737 | 511947404 | 511947634 | 3.950000e-62 | 250.0 |
22 | TraesCS6A01G131300 | chr7B | 96.774 | 31 | 1 | 0 | 3443 | 3473 | 75793893 | 75793863 | 1.200000e-02 | 52.8 |
23 | TraesCS6A01G131300 | chr1B | 89.787 | 235 | 23 | 1 | 1506 | 1740 | 113518791 | 113519024 | 3.870000e-77 | 300.0 |
24 | TraesCS6A01G131300 | chr5B | 88.511 | 235 | 26 | 1 | 1506 | 1740 | 84735462 | 84735229 | 3.900000e-72 | 283.0 |
25 | TraesCS6A01G131300 | chr7A | 91.713 | 181 | 13 | 2 | 107 | 286 | 672868736 | 672868915 | 3.950000e-62 | 250.0 |
26 | TraesCS6A01G131300 | chrUn | 73.029 | 723 | 184 | 11 | 156 | 873 | 102571445 | 102570729 | 1.840000e-60 | 244.0 |
27 | TraesCS6A01G131300 | chr4D | 87.135 | 171 | 10 | 6 | 1447 | 1611 | 24254374 | 24254210 | 4.060000e-42 | 183.0 |
28 | TraesCS6A01G131300 | chr5D | 96.703 | 91 | 3 | 0 | 3478 | 3568 | 447627018 | 447626928 | 1.150000e-32 | 152.0 |
29 | TraesCS6A01G131300 | chr2A | 94.898 | 98 | 3 | 2 | 3474 | 3570 | 712971380 | 712971476 | 1.150000e-32 | 152.0 |
30 | TraesCS6A01G131300 | chr2A | 75.000 | 176 | 42 | 2 | 138 | 312 | 779898775 | 779898601 | 5.490000e-11 | 80.5 |
31 | TraesCS6A01G131300 | chr7D | 94.792 | 96 | 3 | 2 | 3469 | 3562 | 448931412 | 448931317 | 1.480000e-31 | 148.0 |
32 | TraesCS6A01G131300 | chr7D | 96.591 | 88 | 3 | 0 | 3478 | 3565 | 22964257 | 22964344 | 5.330000e-31 | 147.0 |
33 | TraesCS6A01G131300 | chr7D | 95.604 | 91 | 3 | 1 | 3475 | 3564 | 426558895 | 426558985 | 1.920000e-30 | 145.0 |
34 | TraesCS6A01G131300 | chr2D | 93.069 | 101 | 6 | 1 | 3478 | 3577 | 15682984 | 15682884 | 5.330000e-31 | 147.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G131300 | chr6A | 103758862 | 103765461 | 6599 | True | 12189.000000 | 12189 | 100.000000 | 1 | 6600 | 1 | chr6A.!!$R1 | 6599 |
1 | TraesCS6A01G131300 | chr6D | 86142834 | 86148286 | 5452 | True | 2682.666667 | 3557 | 93.687333 | 1123 | 6600 | 3 | chr6D.!!$R4 | 5477 |
2 | TraesCS6A01G131300 | chr6D | 423001243 | 423002280 | 1037 | True | 717.000000 | 717 | 79.333000 | 62 | 1101 | 1 | chr6D.!!$R3 | 1039 |
3 | TraesCS6A01G131300 | chr6B | 163230005 | 163235778 | 5773 | True | 1598.400000 | 3336 | 92.953400 | 1121 | 6600 | 5 | chr6B.!!$R1 | 5479 |
4 | TraesCS6A01G131300 | chr5A | 323083803 | 323084764 | 961 | False | 1251.000000 | 1251 | 90.152000 | 4933 | 5906 | 1 | chr5A.!!$F1 | 973 |
5 | TraesCS6A01G131300 | chr4A | 113485800 | 113486752 | 952 | False | 1240.000000 | 1240 | 90.164000 | 4933 | 5898 | 1 | chr4A.!!$F1 | 965 |
6 | TraesCS6A01G131300 | chr1A | 520826355 | 520827215 | 860 | True | 1046.000000 | 1046 | 88.618000 | 161 | 1020 | 1 | chr1A.!!$R1 | 859 |
7 | TraesCS6A01G131300 | chr3A | 46983566 | 46984300 | 734 | False | 1020.000000 | 1020 | 91.712000 | 1 | 735 | 1 | chr3A.!!$F1 | 734 |
8 | TraesCS6A01G131300 | chr2B | 526402144 | 526403166 | 1022 | False | 693.000000 | 693 | 79.126000 | 84 | 1101 | 1 | chr2B.!!$F1 | 1017 |
9 | TraesCS6A01G131300 | chrUn | 102570729 | 102571445 | 716 | True | 244.000000 | 244 | 73.029000 | 156 | 873 | 1 | chrUn.!!$R1 | 717 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
268 | 269 | 0.388659 | AATTGCCGCACACAACACAT | 59.611 | 45.0 | 0.00 | 0.0 | 0.00 | 3.21 | F |
1209 | 1234 | 0.109919 | GCCGAACACCGTTTCATTCC | 60.110 | 55.0 | 0.00 | 0.0 | 36.31 | 3.01 | F |
1938 | 2275 | 0.689080 | TTTGCCCACTTTTGCCCTCA | 60.689 | 50.0 | 0.00 | 0.0 | 0.00 | 3.86 | F |
2001 | 2356 | 1.087202 | TGTGACTGTGCGGTGTTGAC | 61.087 | 55.0 | 0.00 | 0.0 | 0.00 | 3.18 | F |
3675 | 4033 | 1.141645 | TTATCACGACGGTGTTGTGC | 58.858 | 50.0 | 11.60 | 0.0 | 44.87 | 4.57 | F |
4911 | 5299 | 0.896923 | TCGCCGGGTAAGTAATGTGT | 59.103 | 50.0 | 2.18 | 0.0 | 0.00 | 3.72 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1616 | 1951 | 0.030092 | ATCCCCTCCCAATCCTTCGA | 60.030 | 55.000 | 0.0 | 0.0 | 0.00 | 3.71 | R |
2178 | 2533 | 1.592400 | GCAAACACAGCCACAAGCC | 60.592 | 57.895 | 0.0 | 0.0 | 45.47 | 4.35 | R |
3547 | 3903 | 0.108281 | GCAACTACTTCCTCCGTCCC | 60.108 | 60.000 | 0.0 | 0.0 | 0.00 | 4.46 | R |
3918 | 4276 | 0.471617 | GATCCTGACTGATGTGGGGG | 59.528 | 60.000 | 0.0 | 0.0 | 0.00 | 5.40 | R |
5051 | 5451 | 0.031917 | TCCCCATCATTGCAGGCATT | 60.032 | 50.000 | 0.0 | 0.0 | 0.00 | 3.56 | R |
6359 | 6874 | 0.171455 | TTTGTGTGTTTGGTCGGCAC | 59.829 | 50.000 | 0.0 | 0.0 | 0.00 | 5.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
44 | 45 | 6.336566 | TCTGAATCATACTCTGAGCTTTCAC | 58.663 | 40.000 | 4.19 | 0.00 | 37.28 | 3.18 |
46 | 47 | 4.991153 | ATCATACTCTGAGCTTTCACGA | 57.009 | 40.909 | 4.19 | 0.00 | 37.28 | 4.35 |
53 | 54 | 0.976641 | TGAGCTTTCACGATCCTGGT | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
60 | 61 | 3.973206 | TTCACGATCCTGGTTGTACAT | 57.027 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
64 | 65 | 1.484653 | CGATCCTGGTTGTACATGGGA | 59.515 | 52.381 | 0.00 | 2.84 | 0.00 | 4.37 |
97 | 98 | 1.451567 | CGAGCGACCTCCACCTCTA | 60.452 | 63.158 | 0.00 | 0.00 | 34.49 | 2.43 |
100 | 101 | 1.681327 | GCGACCTCCACCTCTACCA | 60.681 | 63.158 | 0.00 | 0.00 | 0.00 | 3.25 |
101 | 102 | 1.668101 | GCGACCTCCACCTCTACCAG | 61.668 | 65.000 | 0.00 | 0.00 | 0.00 | 4.00 |
151 | 152 | 3.003173 | CTGCCTTCTCCCGGTCCA | 61.003 | 66.667 | 0.00 | 0.00 | 0.00 | 4.02 |
152 | 153 | 2.285368 | TGCCTTCTCCCGGTCCAT | 60.285 | 61.111 | 0.00 | 0.00 | 0.00 | 3.41 |
263 | 264 | 1.068753 | CCCAAATTGCCGCACACAA | 59.931 | 52.632 | 0.00 | 0.00 | 0.00 | 3.33 |
268 | 269 | 0.388659 | AATTGCCGCACACAACACAT | 59.611 | 45.000 | 0.00 | 0.00 | 0.00 | 3.21 |
289 | 290 | 6.147985 | CACATCAATCAGGCAATCTCTCATAG | 59.852 | 42.308 | 0.00 | 0.00 | 0.00 | 2.23 |
310 | 311 | 2.930682 | GTTTACCCTGAAGATGACTCGC | 59.069 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
370 | 371 | 0.882927 | TTTTGAGGGGCTTCGTGACG | 60.883 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
376 | 377 | 0.953960 | GGGGCTTCGTGACGTCAATT | 60.954 | 55.000 | 21.95 | 0.00 | 0.00 | 2.32 |
391 | 392 | 1.375523 | AATTCTCACCCGGACACGC | 60.376 | 57.895 | 0.73 | 0.00 | 39.22 | 5.34 |
416 | 417 | 3.188159 | AGTTACCTTCAAAGTCGTGCA | 57.812 | 42.857 | 0.00 | 0.00 | 0.00 | 4.57 |
421 | 422 | 6.261381 | AGTTACCTTCAAAGTCGTGCAATTTA | 59.739 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
429 | 430 | 3.740115 | AGTCGTGCAATTTAGGTTCAGT | 58.260 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
494 | 495 | 2.941480 | GGAAGTATCCGTCTGGTAGGA | 58.059 | 52.381 | 0.00 | 0.00 | 41.30 | 2.94 |
582 | 584 | 2.597510 | GCAAGGACCACCGCCTTT | 60.598 | 61.111 | 0.00 | 0.00 | 42.99 | 3.11 |
592 | 594 | 2.176045 | CCACCGCCTTTCCCTTAAAAT | 58.824 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
712 | 714 | 3.866582 | GATCCCAGGCCACCCTCG | 61.867 | 72.222 | 5.01 | 0.00 | 40.33 | 4.63 |
719 | 721 | 2.047179 | GGCCACCCTCGTGTTCTC | 60.047 | 66.667 | 0.00 | 0.00 | 38.41 | 2.87 |
752 | 754 | 3.773418 | TTGGTTGTAGGATTTGTCGGA | 57.227 | 42.857 | 0.00 | 0.00 | 0.00 | 4.55 |
846 | 848 | 2.239654 | CAGTTCATCCTCCTTAAGCCCA | 59.760 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
867 | 869 | 1.645455 | CTCCGCCATCATTGCTTCG | 59.355 | 57.895 | 0.00 | 0.00 | 0.00 | 3.79 |
906 | 908 | 1.497991 | CCGAACTTGACGCAGAAGAA | 58.502 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
907 | 909 | 1.192534 | CCGAACTTGACGCAGAAGAAC | 59.807 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
935 | 937 | 0.906775 | CCCTAGCCCGAGGTTGTTTA | 59.093 | 55.000 | 0.00 | 0.00 | 34.45 | 2.01 |
944 | 946 | 1.287425 | GAGGTTGTTTAGATCCGCGG | 58.713 | 55.000 | 22.12 | 22.12 | 0.00 | 6.46 |
967 | 969 | 0.596859 | GTATGAACCCTAGCGCCGTC | 60.597 | 60.000 | 2.29 | 0.00 | 0.00 | 4.79 |
968 | 970 | 2.067091 | TATGAACCCTAGCGCCGTCG | 62.067 | 60.000 | 2.29 | 0.00 | 39.07 | 5.12 |
985 | 987 | 3.782443 | GCCAATCCCCCGTCGACT | 61.782 | 66.667 | 14.70 | 0.00 | 0.00 | 4.18 |
986 | 988 | 2.499685 | CCAATCCCCCGTCGACTC | 59.500 | 66.667 | 14.70 | 0.00 | 0.00 | 3.36 |
999 | 1004 | 2.683933 | GACTCCGAGGCCCCAAGA | 60.684 | 66.667 | 0.00 | 0.00 | 0.00 | 3.02 |
1000 | 1005 | 3.003763 | ACTCCGAGGCCCCAAGAC | 61.004 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1001 | 1006 | 3.003173 | CTCCGAGGCCCCAAGACA | 61.003 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
1006 | 1013 | 1.152830 | GAGGCCCCAAGACACCAAA | 59.847 | 57.895 | 0.00 | 0.00 | 0.00 | 3.28 |
1011 | 1018 | 1.547675 | GCCCCAAGACACCAAAGATCA | 60.548 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
1016 | 1023 | 1.348064 | AGACACCAAAGATCACCGGA | 58.652 | 50.000 | 9.46 | 0.00 | 0.00 | 5.14 |
1030 | 1037 | 2.363406 | CGGAGGGGGTAGAACGGT | 60.363 | 66.667 | 0.00 | 0.00 | 0.00 | 4.83 |
1035 | 1042 | 1.763655 | GGGGGTAGAACGGTAGGGG | 60.764 | 68.421 | 0.00 | 0.00 | 0.00 | 4.79 |
1038 | 1045 | 0.259938 | GGGTAGAACGGTAGGGGAGA | 59.740 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1041 | 1049 | 2.357569 | GGTAGAACGGTAGGGGAGAGAA | 60.358 | 54.545 | 0.00 | 0.00 | 0.00 | 2.87 |
1056 | 1064 | 1.026584 | GAGAAGTCTCTACGGGAGGC | 58.973 | 60.000 | 0.87 | 4.45 | 46.30 | 4.70 |
1080 | 1088 | 2.194212 | GCCATCGCCGAGAGTAGGA | 61.194 | 63.158 | 0.00 | 0.00 | 0.00 | 2.94 |
1104 | 1112 | 2.406205 | CCTAACGAGAGGGGAGACG | 58.594 | 63.158 | 0.00 | 0.00 | 32.39 | 4.18 |
1105 | 1113 | 0.394080 | CCTAACGAGAGGGGAGACGT | 60.394 | 60.000 | 0.00 | 0.00 | 40.64 | 4.34 |
1106 | 1114 | 4.515718 | AACGAGAGGGGAGACGTT | 57.484 | 55.556 | 0.00 | 0.00 | 42.60 | 3.99 |
1107 | 1115 | 1.817447 | CTAACGAGAGGGGAGACGTTT | 59.183 | 52.381 | 0.00 | 0.00 | 44.46 | 3.60 |
1108 | 1116 | 0.602060 | AACGAGAGGGGAGACGTTTC | 59.398 | 55.000 | 0.00 | 0.00 | 44.46 | 2.78 |
1109 | 1117 | 0.251253 | ACGAGAGGGGAGACGTTTCT | 60.251 | 55.000 | 6.02 | 0.00 | 35.47 | 2.52 |
1110 | 1118 | 0.889306 | CGAGAGGGGAGACGTTTCTT | 59.111 | 55.000 | 6.02 | 0.00 | 29.47 | 2.52 |
1111 | 1119 | 1.402984 | CGAGAGGGGAGACGTTTCTTG | 60.403 | 57.143 | 6.02 | 0.00 | 29.47 | 3.02 |
1112 | 1120 | 1.893801 | GAGAGGGGAGACGTTTCTTGA | 59.106 | 52.381 | 6.02 | 0.00 | 29.47 | 3.02 |
1113 | 1121 | 2.498078 | GAGAGGGGAGACGTTTCTTGAT | 59.502 | 50.000 | 6.02 | 0.00 | 29.47 | 2.57 |
1114 | 1122 | 2.907042 | AGAGGGGAGACGTTTCTTGATT | 59.093 | 45.455 | 6.02 | 0.00 | 29.47 | 2.57 |
1115 | 1123 | 3.003480 | GAGGGGAGACGTTTCTTGATTG | 58.997 | 50.000 | 6.02 | 0.00 | 29.47 | 2.67 |
1116 | 1124 | 2.372172 | AGGGGAGACGTTTCTTGATTGT | 59.628 | 45.455 | 6.02 | 0.00 | 29.47 | 2.71 |
1117 | 1125 | 3.146847 | GGGGAGACGTTTCTTGATTGTT | 58.853 | 45.455 | 6.02 | 0.00 | 29.47 | 2.83 |
1118 | 1126 | 3.568430 | GGGGAGACGTTTCTTGATTGTTT | 59.432 | 43.478 | 6.02 | 0.00 | 29.47 | 2.83 |
1119 | 1127 | 4.037565 | GGGGAGACGTTTCTTGATTGTTTT | 59.962 | 41.667 | 6.02 | 0.00 | 29.47 | 2.43 |
1130 | 1138 | 4.588106 | TCTTGATTGTTTTCATTCAGCCCA | 59.412 | 37.500 | 0.00 | 0.00 | 39.99 | 5.36 |
1175 | 1183 | 3.185880 | ACTGACCTAACAGGCCTTCTA | 57.814 | 47.619 | 0.00 | 0.00 | 39.63 | 2.10 |
1200 | 1208 | 1.145156 | TCATATGGGCCGAACACCG | 59.855 | 57.895 | 2.13 | 0.00 | 38.18 | 4.94 |
1209 | 1234 | 0.109919 | GCCGAACACCGTTTCATTCC | 60.110 | 55.000 | 0.00 | 0.00 | 36.31 | 3.01 |
1473 | 1808 | 2.517402 | CCGACTCGAGGAGGGAGG | 60.517 | 72.222 | 18.41 | 6.55 | 35.82 | 4.30 |
1591 | 1926 | 1.959226 | TGTTCTCGCAACCTTCGCC | 60.959 | 57.895 | 0.00 | 0.00 | 0.00 | 5.54 |
1617 | 1952 | 3.451894 | CACCAGCGCCCCCAAATC | 61.452 | 66.667 | 2.29 | 0.00 | 0.00 | 2.17 |
1811 | 2148 | 2.644992 | GAGTTTTGCCGCTGGTGG | 59.355 | 61.111 | 0.00 | 0.00 | 0.00 | 4.61 |
1875 | 2212 | 1.016130 | CGATTGCTGACTCCAAGCGT | 61.016 | 55.000 | 3.93 | 0.00 | 44.28 | 5.07 |
1938 | 2275 | 0.689080 | TTTGCCCACTTTTGCCCTCA | 60.689 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1979 | 2334 | 3.291584 | CTGCTGGTAGTAGGAGATGTGA | 58.708 | 50.000 | 0.00 | 0.00 | 38.28 | 3.58 |
1980 | 2335 | 3.291584 | TGCTGGTAGTAGGAGATGTGAG | 58.708 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1981 | 2336 | 3.053619 | TGCTGGTAGTAGGAGATGTGAGA | 60.054 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
1982 | 2337 | 4.148838 | GCTGGTAGTAGGAGATGTGAGAT | 58.851 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
1983 | 2338 | 4.022416 | GCTGGTAGTAGGAGATGTGAGATG | 60.022 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1984 | 2339 | 5.130705 | TGGTAGTAGGAGATGTGAGATGT | 57.869 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
1985 | 2340 | 4.889995 | TGGTAGTAGGAGATGTGAGATGTG | 59.110 | 45.833 | 0.00 | 0.00 | 0.00 | 3.21 |
2001 | 2356 | 1.087202 | TGTGACTGTGCGGTGTTGAC | 61.087 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2037 | 2392 | 2.292103 | ATCTGCAGCTCGTTTCTCTC | 57.708 | 50.000 | 9.47 | 0.00 | 0.00 | 3.20 |
2142 | 2497 | 4.105486 | GCGCCTCATCTGTTTTTATTTCC | 58.895 | 43.478 | 0.00 | 0.00 | 0.00 | 3.13 |
2153 | 2508 | 5.757886 | TGTTTTTATTTCCGCTGAGTTCAG | 58.242 | 37.500 | 4.77 | 4.77 | 46.40 | 3.02 |
2178 | 2533 | 2.815503 | TGTGTGATGTTTGAGCTGGATG | 59.184 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
2187 | 2542 | 2.362120 | AGCTGGATGGCTTGTGGC | 60.362 | 61.111 | 0.00 | 0.00 | 39.86 | 5.01 |
2191 | 2546 | 1.592400 | CTGGATGGCTTGTGGCTGTG | 61.592 | 60.000 | 0.00 | 0.00 | 41.46 | 3.66 |
2261 | 2616 | 5.418310 | TGAACTGCTTGCTGTAAGTTTAC | 57.582 | 39.130 | 7.33 | 0.00 | 38.70 | 2.01 |
2262 | 2617 | 4.878971 | TGAACTGCTTGCTGTAAGTTTACA | 59.121 | 37.500 | 7.33 | 4.78 | 41.06 | 2.41 |
2264 | 2619 | 5.828299 | ACTGCTTGCTGTAAGTTTACAAA | 57.172 | 34.783 | 7.33 | 0.00 | 42.55 | 2.83 |
2269 | 2624 | 7.708051 | TGCTTGCTGTAAGTTTACAAAATGTA | 58.292 | 30.769 | 7.33 | 0.00 | 42.55 | 2.29 |
2270 | 2625 | 8.356657 | TGCTTGCTGTAAGTTTACAAAATGTAT | 58.643 | 29.630 | 7.33 | 0.00 | 42.55 | 2.29 |
2284 | 2639 | 9.621629 | TTACAAAATGTATAGATTACCCTGTGG | 57.378 | 33.333 | 0.00 | 0.00 | 32.20 | 4.17 |
2292 | 2647 | 3.624777 | AGATTACCCTGTGGCATTCAAG | 58.375 | 45.455 | 0.00 | 0.00 | 33.59 | 3.02 |
2294 | 2649 | 4.227300 | AGATTACCCTGTGGCATTCAAGTA | 59.773 | 41.667 | 0.00 | 0.00 | 33.59 | 2.24 |
2295 | 2650 | 2.969821 | ACCCTGTGGCATTCAAGTAA | 57.030 | 45.000 | 0.00 | 0.00 | 33.59 | 2.24 |
2418 | 2773 | 1.606601 | GTCTGCCCCCTTTTCCCAC | 60.607 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
2443 | 2798 | 9.490379 | ACGGTAAATCATGATAATAAAGTCCTC | 57.510 | 33.333 | 9.04 | 0.00 | 0.00 | 3.71 |
2596 | 2951 | 7.104043 | ACTTTGTCATTGCAGCACATATTAT | 57.896 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2817 | 3172 | 2.417243 | CCGGTTCAATGATTTTGCCTCC | 60.417 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2830 | 3185 | 1.288508 | TGCCTCCCCATTGCTGGTAT | 61.289 | 55.000 | 0.00 | 0.00 | 41.37 | 2.73 |
2848 | 3203 | 6.877322 | GCTGGTATAGACTTCTGTTTAAACCA | 59.123 | 38.462 | 15.59 | 1.58 | 0.00 | 3.67 |
2850 | 3205 | 9.449719 | CTGGTATAGACTTCTGTTTAAACCATT | 57.550 | 33.333 | 15.59 | 0.00 | 0.00 | 3.16 |
2857 | 3212 | 7.979537 | AGACTTCTGTTTAAACCATTGTTTTCC | 59.020 | 33.333 | 15.59 | 0.00 | 41.92 | 3.13 |
2884 | 3239 | 8.797350 | ATGATTTACAGATCACAATGTTCTCA | 57.203 | 30.769 | 0.00 | 0.00 | 38.75 | 3.27 |
2888 | 3243 | 4.978099 | ACAGATCACAATGTTCTCAACCT | 58.022 | 39.130 | 0.00 | 0.00 | 0.00 | 3.50 |
2907 | 3262 | 5.972327 | ACCTCATCTTCTTTCATCCTGAT | 57.028 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
2923 | 3278 | 7.341030 | TCATCCTGATTGTGTTATTGAGTCAT | 58.659 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
3122 | 3477 | 6.509418 | TTCATTTTTAGCCACACCATCTAC | 57.491 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
3479 | 3835 | 8.607441 | TGTAGCATGATGTGAGGATTTAATAC | 57.393 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
3480 | 3836 | 8.432013 | TGTAGCATGATGTGAGGATTTAATACT | 58.568 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
3481 | 3837 | 7.976135 | AGCATGATGTGAGGATTTAATACTC | 57.024 | 36.000 | 10.12 | 10.12 | 40.81 | 2.59 |
3482 | 3838 | 6.939163 | AGCATGATGTGAGGATTTAATACTCC | 59.061 | 38.462 | 14.02 | 6.70 | 39.62 | 3.85 |
3483 | 3839 | 6.150140 | GCATGATGTGAGGATTTAATACTCCC | 59.850 | 42.308 | 14.02 | 3.79 | 39.62 | 4.30 |
3484 | 3840 | 7.456725 | CATGATGTGAGGATTTAATACTCCCT | 58.543 | 38.462 | 14.02 | 0.00 | 39.62 | 4.20 |
3485 | 3841 | 7.067496 | TGATGTGAGGATTTAATACTCCCTC | 57.933 | 40.000 | 14.02 | 8.71 | 39.62 | 4.30 |
3486 | 3842 | 5.888982 | TGTGAGGATTTAATACTCCCTCC | 57.111 | 43.478 | 14.02 | 1.53 | 39.62 | 4.30 |
3487 | 3843 | 4.344102 | TGTGAGGATTTAATACTCCCTCCG | 59.656 | 45.833 | 14.02 | 0.00 | 39.62 | 4.63 |
3488 | 3844 | 4.344390 | GTGAGGATTTAATACTCCCTCCGT | 59.656 | 45.833 | 14.02 | 0.00 | 39.62 | 4.69 |
3489 | 3845 | 4.587684 | TGAGGATTTAATACTCCCTCCGTC | 59.412 | 45.833 | 14.02 | 0.00 | 39.62 | 4.79 |
3490 | 3846 | 3.902467 | AGGATTTAATACTCCCTCCGTCC | 59.098 | 47.826 | 0.00 | 0.00 | 31.49 | 4.79 |
3491 | 3847 | 3.007723 | GGATTTAATACTCCCTCCGTCCC | 59.992 | 52.174 | 0.00 | 0.00 | 0.00 | 4.46 |
3492 | 3848 | 2.852714 | TTAATACTCCCTCCGTCCCA | 57.147 | 50.000 | 0.00 | 0.00 | 0.00 | 4.37 |
3493 | 3849 | 3.339713 | TTAATACTCCCTCCGTCCCAT | 57.660 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
3494 | 3850 | 4.474303 | TTAATACTCCCTCCGTCCCATA | 57.526 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
3495 | 3851 | 3.339713 | AATACTCCCTCCGTCCCATAA | 57.660 | 47.619 | 0.00 | 0.00 | 0.00 | 1.90 |
3496 | 3852 | 3.562108 | ATACTCCCTCCGTCCCATAAT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
3497 | 3853 | 4.687262 | ATACTCCCTCCGTCCCATAATA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
3498 | 3854 | 3.562108 | ACTCCCTCCGTCCCATAATAT | 57.438 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
3499 | 3855 | 4.687262 | ACTCCCTCCGTCCCATAATATA | 57.313 | 45.455 | 0.00 | 0.00 | 0.00 | 0.86 |
3500 | 3856 | 5.019657 | ACTCCCTCCGTCCCATAATATAA | 57.980 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
3501 | 3857 | 5.024118 | ACTCCCTCCGTCCCATAATATAAG | 58.976 | 45.833 | 0.00 | 0.00 | 0.00 | 1.73 |
3502 | 3858 | 5.222484 | ACTCCCTCCGTCCCATAATATAAGA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3503 | 3859 | 5.269991 | TCCCTCCGTCCCATAATATAAGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
3504 | 3860 | 4.141914 | CCCTCCGTCCCATAATATAAGAGC | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
3505 | 3861 | 4.440250 | CCTCCGTCCCATAATATAAGAGCG | 60.440 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
3506 | 3862 | 4.084287 | TCCGTCCCATAATATAAGAGCGT | 58.916 | 43.478 | 0.00 | 0.00 | 0.00 | 5.07 |
3507 | 3863 | 4.525487 | TCCGTCCCATAATATAAGAGCGTT | 59.475 | 41.667 | 0.00 | 0.00 | 0.00 | 4.84 |
3508 | 3864 | 5.011329 | TCCGTCCCATAATATAAGAGCGTTT | 59.989 | 40.000 | 0.00 | 0.00 | 0.00 | 3.60 |
3509 | 3865 | 5.699458 | CCGTCCCATAATATAAGAGCGTTTT | 59.301 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
3510 | 3866 | 6.204108 | CCGTCCCATAATATAAGAGCGTTTTT | 59.796 | 38.462 | 0.00 | 0.00 | 0.00 | 1.94 |
3535 | 3891 | 9.748708 | TTTATACTAGTGTAGTGTCAAAAACGT | 57.251 | 29.630 | 5.39 | 0.00 | 39.81 | 3.99 |
3536 | 3892 | 9.748708 | TTATACTAGTGTAGTGTCAAAAACGTT | 57.251 | 29.630 | 5.39 | 0.00 | 39.81 | 3.99 |
3537 | 3893 | 6.579491 | ACTAGTGTAGTGTCAAAAACGTTC | 57.421 | 37.500 | 0.00 | 0.00 | 37.69 | 3.95 |
3538 | 3894 | 6.335777 | ACTAGTGTAGTGTCAAAAACGTTCT | 58.664 | 36.000 | 0.00 | 0.00 | 37.69 | 3.01 |
3539 | 3895 | 6.815142 | ACTAGTGTAGTGTCAAAAACGTTCTT | 59.185 | 34.615 | 0.00 | 0.00 | 37.69 | 2.52 |
3540 | 3896 | 7.975616 | ACTAGTGTAGTGTCAAAAACGTTCTTA | 59.024 | 33.333 | 0.00 | 0.00 | 37.69 | 2.10 |
3541 | 3897 | 7.781548 | AGTGTAGTGTCAAAAACGTTCTTAT | 57.218 | 32.000 | 0.00 | 0.00 | 0.00 | 1.73 |
3542 | 3898 | 8.876275 | AGTGTAGTGTCAAAAACGTTCTTATA | 57.124 | 30.769 | 0.00 | 0.00 | 0.00 | 0.98 |
3543 | 3899 | 9.485206 | AGTGTAGTGTCAAAAACGTTCTTATAT | 57.515 | 29.630 | 0.00 | 0.00 | 0.00 | 0.86 |
3549 | 3905 | 9.498307 | GTGTCAAAAACGTTCTTATATTATGGG | 57.502 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
3550 | 3906 | 9.451002 | TGTCAAAAACGTTCTTATATTATGGGA | 57.549 | 29.630 | 0.00 | 0.00 | 0.00 | 4.37 |
3551 | 3907 | 9.712359 | GTCAAAAACGTTCTTATATTATGGGAC | 57.288 | 33.333 | 0.00 | 0.00 | 0.00 | 4.46 |
3552 | 3908 | 8.605746 | TCAAAAACGTTCTTATATTATGGGACG | 58.394 | 33.333 | 0.00 | 9.33 | 0.00 | 4.79 |
3553 | 3909 | 7.486802 | AAAACGTTCTTATATTATGGGACGG | 57.513 | 36.000 | 0.00 | 1.76 | 0.00 | 4.79 |
3554 | 3910 | 6.409524 | AACGTTCTTATATTATGGGACGGA | 57.590 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
3555 | 3911 | 6.022163 | ACGTTCTTATATTATGGGACGGAG | 57.978 | 41.667 | 13.18 | 0.00 | 0.00 | 4.63 |
3556 | 3912 | 5.047519 | ACGTTCTTATATTATGGGACGGAGG | 60.048 | 44.000 | 13.18 | 0.00 | 0.00 | 4.30 |
3557 | 3913 | 5.184479 | CGTTCTTATATTATGGGACGGAGGA | 59.816 | 44.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3558 | 3914 | 6.294899 | CGTTCTTATATTATGGGACGGAGGAA | 60.295 | 42.308 | 0.00 | 0.00 | 0.00 | 3.36 |
3559 | 3915 | 6.852420 | TCTTATATTATGGGACGGAGGAAG | 57.148 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
3560 | 3916 | 6.320518 | TCTTATATTATGGGACGGAGGAAGT | 58.679 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3561 | 3917 | 7.472741 | TCTTATATTATGGGACGGAGGAAGTA | 58.527 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
3675 | 4033 | 1.141645 | TTATCACGACGGTGTTGTGC | 58.858 | 50.000 | 11.60 | 0.00 | 44.87 | 4.57 |
3802 | 4160 | 9.337091 | ACACGTGTAAAATATTTATGCACTTTC | 57.663 | 29.630 | 21.98 | 0.00 | 0.00 | 2.62 |
3871 | 4229 | 7.180322 | TCAATTTGCATTCCCTATTTGCTTA | 57.820 | 32.000 | 0.00 | 0.00 | 37.28 | 3.09 |
3918 | 4276 | 9.745018 | TTATCCCATTGATCTCTCATATTTTCC | 57.255 | 33.333 | 0.00 | 0.00 | 34.76 | 3.13 |
3953 | 4311 | 4.161189 | TCAGGATCTGATGAAAGGACTGTC | 59.839 | 45.833 | 0.00 | 0.00 | 35.39 | 3.51 |
3980 | 4338 | 3.367703 | GCAATACAATTGCAGTCCAAGCT | 60.368 | 43.478 | 17.41 | 0.00 | 44.34 | 3.74 |
4004 | 4362 | 6.422333 | TGATATGCCTTTCAATGGTCTTACA | 58.578 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4198 | 4556 | 1.760029 | GGTGAAAAGCAAAGGACCCAA | 59.240 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
4606 | 4966 | 9.207868 | AGTCCTCTTCTCTATAATGCTTTAAGT | 57.792 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
4644 | 5005 | 2.897969 | TCTGGAGACTGAAGGTTGTACC | 59.102 | 50.000 | 0.00 | 0.00 | 35.13 | 3.34 |
4645 | 5006 | 2.632996 | CTGGAGACTGAAGGTTGTACCA | 59.367 | 50.000 | 0.00 | 0.00 | 41.95 | 3.25 |
4646 | 5007 | 3.042682 | TGGAGACTGAAGGTTGTACCAA | 58.957 | 45.455 | 0.00 | 0.00 | 41.95 | 3.67 |
4647 | 5008 | 3.456644 | TGGAGACTGAAGGTTGTACCAAA | 59.543 | 43.478 | 0.00 | 0.00 | 41.95 | 3.28 |
4648 | 5009 | 4.080243 | TGGAGACTGAAGGTTGTACCAAAA | 60.080 | 41.667 | 0.00 | 0.00 | 41.95 | 2.44 |
4651 | 5039 | 5.445964 | AGACTGAAGGTTGTACCAAAATGT | 58.554 | 37.500 | 0.00 | 0.00 | 41.95 | 2.71 |
4673 | 5061 | 9.807649 | AATGTATATTCTTGAAGACCAAAATGC | 57.192 | 29.630 | 0.00 | 0.00 | 33.76 | 3.56 |
4908 | 5296 | 2.132762 | GTGATCGCCGGGTAAGTAATG | 58.867 | 52.381 | 2.18 | 0.00 | 0.00 | 1.90 |
4909 | 5297 | 1.758280 | TGATCGCCGGGTAAGTAATGT | 59.242 | 47.619 | 2.18 | 0.00 | 0.00 | 2.71 |
4910 | 5298 | 2.132762 | GATCGCCGGGTAAGTAATGTG | 58.867 | 52.381 | 2.18 | 0.00 | 0.00 | 3.21 |
4911 | 5299 | 0.896923 | TCGCCGGGTAAGTAATGTGT | 59.103 | 50.000 | 2.18 | 0.00 | 0.00 | 3.72 |
4912 | 5300 | 1.135024 | TCGCCGGGTAAGTAATGTGTC | 60.135 | 52.381 | 2.18 | 0.00 | 0.00 | 3.67 |
4915 | 5303 | 2.612212 | GCCGGGTAAGTAATGTGTCATG | 59.388 | 50.000 | 2.18 | 0.00 | 0.00 | 3.07 |
4922 | 5322 | 6.238374 | GGGTAAGTAATGTGTCATGTGTATGC | 60.238 | 42.308 | 0.00 | 0.00 | 34.21 | 3.14 |
4926 | 5326 | 7.395190 | AGTAATGTGTCATGTGTATGCAATT | 57.605 | 32.000 | 0.00 | 0.00 | 34.21 | 2.32 |
5051 | 5451 | 0.478072 | TTGGCCAGCTGAAGAAGGAA | 59.522 | 50.000 | 17.39 | 0.00 | 0.00 | 3.36 |
5173 | 5618 | 7.658575 | CCAAGATGAAACCAAATGAATTTCAGT | 59.341 | 33.333 | 5.21 | 0.00 | 43.52 | 3.41 |
5179 | 5637 | 4.805219 | ACCAAATGAATTTCAGTTACGCC | 58.195 | 39.130 | 11.36 | 0.00 | 31.77 | 5.68 |
5299 | 5757 | 3.382832 | CGGGCGACTTCCCTGACT | 61.383 | 66.667 | 0.00 | 0.00 | 44.30 | 3.41 |
5448 | 5906 | 2.271944 | ACCCTTACCAGTGAACTTGC | 57.728 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
5539 | 5997 | 1.307097 | GCAAGCATGAGAGACCCATC | 58.693 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5570 | 6028 | 0.108662 | GTTATGCCTGCCCTTTGTGC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
5579 | 6037 | 1.006220 | CCCTTTGTGCGGGAAAAGC | 60.006 | 57.895 | 0.00 | 0.00 | 44.90 | 3.51 |
5598 | 6056 | 4.379374 | AGCGATAAACGTGTAACACAAC | 57.621 | 40.909 | 0.00 | 0.00 | 44.60 | 3.32 |
5608 | 6066 | 3.061403 | CGTGTAACACAACGTTCAGAGAC | 60.061 | 47.826 | 0.00 | 0.00 | 39.14 | 3.36 |
5711 | 6170 | 4.951715 | TGGTGGGAGAATTCAAGATGAATG | 59.048 | 41.667 | 8.44 | 0.00 | 45.57 | 2.67 |
5927 | 6396 | 2.207590 | GCTTAAAATCCCGTCCCGTAG | 58.792 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
6088 | 6591 | 2.283298 | CCATCCGTCCATCACAGAAAG | 58.717 | 52.381 | 0.00 | 0.00 | 0.00 | 2.62 |
6089 | 6592 | 2.283298 | CATCCGTCCATCACAGAAAGG | 58.717 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
6092 | 6595 | 1.026718 | CGTCCATCACAGAAAGGGGC | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
6114 | 6622 | 2.649531 | AAAAATCCGTCCACCAGACA | 57.350 | 45.000 | 0.00 | 0.00 | 46.69 | 3.41 |
6115 | 6623 | 2.185004 | AAAATCCGTCCACCAGACAG | 57.815 | 50.000 | 0.00 | 0.00 | 46.69 | 3.51 |
6116 | 6624 | 1.348064 | AAATCCGTCCACCAGACAGA | 58.652 | 50.000 | 0.00 | 0.00 | 46.69 | 3.41 |
6117 | 6625 | 0.608640 | AATCCGTCCACCAGACAGAC | 59.391 | 55.000 | 0.00 | 0.00 | 46.69 | 3.51 |
6273 | 6787 | 1.087771 | GGACGCGGTCGATTGGAATT | 61.088 | 55.000 | 12.47 | 0.00 | 39.41 | 2.17 |
6274 | 6788 | 0.026285 | GACGCGGTCGATTGGAATTG | 59.974 | 55.000 | 12.47 | 0.00 | 39.41 | 2.32 |
6275 | 6789 | 1.351707 | CGCGGTCGATTGGAATTGG | 59.648 | 57.895 | 0.00 | 0.00 | 38.10 | 3.16 |
6276 | 6790 | 1.087202 | CGCGGTCGATTGGAATTGGA | 61.087 | 55.000 | 0.00 | 0.00 | 38.10 | 3.53 |
6277 | 6791 | 1.091537 | GCGGTCGATTGGAATTGGAA | 58.908 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
6278 | 6792 | 1.676006 | GCGGTCGATTGGAATTGGAAT | 59.324 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
6409 | 6924 | 3.379445 | GTGGAGTCGCCGAGGGAA | 61.379 | 66.667 | 0.00 | 0.00 | 40.66 | 3.97 |
6410 | 6925 | 3.068691 | TGGAGTCGCCGAGGGAAG | 61.069 | 66.667 | 0.00 | 0.00 | 40.66 | 3.46 |
6411 | 6926 | 3.839432 | GGAGTCGCCGAGGGAAGG | 61.839 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
6467 | 6982 | 4.838486 | CGAGGCGAGCGAGACCAC | 62.838 | 72.222 | 0.00 | 0.00 | 0.00 | 4.16 |
6468 | 6983 | 3.749064 | GAGGCGAGCGAGACCACA | 61.749 | 66.667 | 0.00 | 0.00 | 0.00 | 4.17 |
6469 | 6984 | 3.973267 | GAGGCGAGCGAGACCACAC | 62.973 | 68.421 | 0.00 | 0.00 | 0.00 | 3.82 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
44 | 45 | 1.484653 | TCCCATGTACAACCAGGATCG | 59.515 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
46 | 47 | 5.930209 | ATAATCCCATGTACAACCAGGAT | 57.070 | 39.130 | 0.00 | 6.58 | 35.64 | 3.24 |
53 | 54 | 6.155910 | ACCATGCAAAATAATCCCATGTACAA | 59.844 | 34.615 | 0.00 | 0.00 | 33.29 | 2.41 |
60 | 61 | 3.625853 | TCGACCATGCAAAATAATCCCA | 58.374 | 40.909 | 0.00 | 0.00 | 0.00 | 4.37 |
64 | 65 | 2.942376 | TCGCTCGACCATGCAAAATAAT | 59.058 | 40.909 | 0.00 | 0.00 | 0.00 | 1.28 |
263 | 264 | 4.197750 | GAGAGATTGCCTGATTGATGTGT | 58.802 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
268 | 269 | 5.883685 | ACTATGAGAGATTGCCTGATTGA | 57.116 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
289 | 290 | 2.930682 | GCGAGTCATCTTCAGGGTAAAC | 59.069 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
310 | 311 | 4.605183 | TCAGAAAGAAGGACTCCCTAGAG | 58.395 | 47.826 | 0.00 | 0.00 | 43.48 | 2.43 |
370 | 371 | 1.439679 | GTGTCCGGGTGAGAATTGAC | 58.560 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
376 | 377 | 3.986006 | GTGCGTGTCCGGGTGAGA | 61.986 | 66.667 | 0.00 | 0.00 | 33.68 | 3.27 |
421 | 422 | 5.531287 | GGGCGAATTCATATTTACTGAACCT | 59.469 | 40.000 | 6.22 | 0.00 | 35.57 | 3.50 |
429 | 430 | 4.509970 | CGACAGTGGGCGAATTCATATTTA | 59.490 | 41.667 | 6.22 | 0.00 | 0.00 | 1.40 |
582 | 584 | 2.645797 | AGGACCGTGGAATTTTAAGGGA | 59.354 | 45.455 | 0.00 | 0.00 | 0.00 | 4.20 |
592 | 594 | 1.278127 | GATGGAAGAAGGACCGTGGAA | 59.722 | 52.381 | 0.00 | 0.00 | 0.00 | 3.53 |
661 | 663 | 2.203126 | GATCAGGCCGCTTGAGGG | 60.203 | 66.667 | 11.21 | 0.00 | 0.00 | 4.30 |
736 | 738 | 4.322198 | GGTACACTCCGACAAATCCTACAA | 60.322 | 45.833 | 0.00 | 0.00 | 0.00 | 2.41 |
752 | 754 | 2.488355 | CGATCGCCACGGTACACT | 59.512 | 61.111 | 0.26 | 0.00 | 0.00 | 3.55 |
806 | 808 | 2.069776 | CAGGATGTGGTGGTGGAGT | 58.930 | 57.895 | 0.00 | 0.00 | 0.00 | 3.85 |
867 | 869 | 1.943340 | GGAACAGCCAAATCCGATCTC | 59.057 | 52.381 | 0.00 | 0.00 | 36.34 | 2.75 |
906 | 908 | 2.464403 | GGGCTAGGGCATCATGGGT | 61.464 | 63.158 | 0.00 | 0.00 | 40.87 | 4.51 |
907 | 909 | 2.437897 | GGGCTAGGGCATCATGGG | 59.562 | 66.667 | 0.00 | 0.00 | 40.87 | 4.00 |
944 | 946 | 1.300697 | CGCTAGGGTTCATACCGCC | 60.301 | 63.158 | 0.00 | 0.00 | 46.04 | 6.13 |
968 | 970 | 3.735037 | GAGTCGACGGGGGATTGGC | 62.735 | 68.421 | 10.46 | 0.00 | 0.00 | 4.52 |
973 | 975 | 4.790962 | CTCGGAGTCGACGGGGGA | 62.791 | 72.222 | 10.46 | 5.75 | 40.88 | 4.81 |
980 | 982 | 4.689549 | TTGGGGCCTCGGAGTCGA | 62.690 | 66.667 | 0.84 | 0.00 | 43.86 | 4.20 |
982 | 984 | 2.683933 | TCTTGGGGCCTCGGAGTC | 60.684 | 66.667 | 0.84 | 0.00 | 0.00 | 3.36 |
983 | 985 | 3.003763 | GTCTTGGGGCCTCGGAGT | 61.004 | 66.667 | 0.84 | 0.00 | 0.00 | 3.85 |
984 | 986 | 3.003173 | TGTCTTGGGGCCTCGGAG | 61.003 | 66.667 | 0.84 | 0.00 | 0.00 | 4.63 |
985 | 987 | 3.319198 | GTGTCTTGGGGCCTCGGA | 61.319 | 66.667 | 0.84 | 0.00 | 0.00 | 4.55 |
986 | 988 | 4.410400 | GGTGTCTTGGGGCCTCGG | 62.410 | 72.222 | 0.84 | 0.00 | 0.00 | 4.63 |
999 | 1004 | 0.324943 | CCTCCGGTGATCTTTGGTGT | 59.675 | 55.000 | 4.76 | 0.00 | 0.00 | 4.16 |
1000 | 1005 | 0.392998 | CCCTCCGGTGATCTTTGGTG | 60.393 | 60.000 | 4.76 | 0.00 | 0.00 | 4.17 |
1001 | 1006 | 1.562672 | CCCCTCCGGTGATCTTTGGT | 61.563 | 60.000 | 4.76 | 0.00 | 0.00 | 3.67 |
1006 | 1013 | 1.233369 | CTACCCCCTCCGGTGATCT | 59.767 | 63.158 | 4.76 | 0.00 | 36.56 | 2.75 |
1011 | 1018 | 2.363406 | CGTTCTACCCCCTCCGGT | 60.363 | 66.667 | 0.00 | 0.00 | 40.13 | 5.28 |
1016 | 1023 | 1.312437 | CCCTACCGTTCTACCCCCT | 59.688 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
1021 | 1028 | 2.725221 | TCTCTCCCCTACCGTTCTAC | 57.275 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1023 | 1030 | 1.358445 | ACTTCTCTCCCCTACCGTTCT | 59.642 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
1027 | 1034 | 1.682740 | GAGACTTCTCTCCCCTACCG | 58.317 | 60.000 | 0.00 | 0.00 | 37.56 | 4.02 |
1038 | 1045 | 0.396001 | GGCCTCCCGTAGAGACTTCT | 60.396 | 60.000 | 0.00 | 0.00 | 46.50 | 2.85 |
1041 | 1049 | 1.076632 | CTGGCCTCCCGTAGAGACT | 60.077 | 63.158 | 3.32 | 0.00 | 46.50 | 3.24 |
1101 | 1109 | 7.565789 | GCTGAATGAAAACAATCAAGAAACGTC | 60.566 | 37.037 | 0.00 | 0.00 | 32.06 | 4.34 |
1102 | 1110 | 6.198966 | GCTGAATGAAAACAATCAAGAAACGT | 59.801 | 34.615 | 0.00 | 0.00 | 32.06 | 3.99 |
1103 | 1111 | 6.346040 | GGCTGAATGAAAACAATCAAGAAACG | 60.346 | 38.462 | 0.00 | 0.00 | 32.06 | 3.60 |
1104 | 1112 | 6.073602 | GGGCTGAATGAAAACAATCAAGAAAC | 60.074 | 38.462 | 0.00 | 0.00 | 32.06 | 2.78 |
1105 | 1113 | 5.990996 | GGGCTGAATGAAAACAATCAAGAAA | 59.009 | 36.000 | 0.00 | 0.00 | 32.06 | 2.52 |
1106 | 1114 | 5.070180 | TGGGCTGAATGAAAACAATCAAGAA | 59.930 | 36.000 | 0.00 | 0.00 | 32.06 | 2.52 |
1107 | 1115 | 4.588106 | TGGGCTGAATGAAAACAATCAAGA | 59.412 | 37.500 | 0.00 | 0.00 | 32.06 | 3.02 |
1108 | 1116 | 4.885413 | TGGGCTGAATGAAAACAATCAAG | 58.115 | 39.130 | 0.00 | 0.00 | 32.06 | 3.02 |
1109 | 1117 | 4.588106 | TCTGGGCTGAATGAAAACAATCAA | 59.412 | 37.500 | 0.00 | 0.00 | 32.06 | 2.57 |
1110 | 1118 | 4.151121 | TCTGGGCTGAATGAAAACAATCA | 58.849 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
1111 | 1119 | 4.789012 | TCTGGGCTGAATGAAAACAATC | 57.211 | 40.909 | 0.00 | 0.00 | 0.00 | 2.67 |
1112 | 1120 | 4.773674 | TCATCTGGGCTGAATGAAAACAAT | 59.226 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
1113 | 1121 | 4.151121 | TCATCTGGGCTGAATGAAAACAA | 58.849 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
1114 | 1122 | 3.765381 | TCATCTGGGCTGAATGAAAACA | 58.235 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
1115 | 1123 | 4.789012 | TTCATCTGGGCTGAATGAAAAC | 57.211 | 40.909 | 6.53 | 0.00 | 0.00 | 2.43 |
1116 | 1124 | 5.539574 | TCTTTTCATCTGGGCTGAATGAAAA | 59.460 | 36.000 | 21.47 | 21.47 | 44.14 | 2.29 |
1117 | 1125 | 5.078949 | TCTTTTCATCTGGGCTGAATGAAA | 58.921 | 37.500 | 13.67 | 13.67 | 38.84 | 2.69 |
1118 | 1126 | 4.665451 | TCTTTTCATCTGGGCTGAATGAA | 58.335 | 39.130 | 5.33 | 5.33 | 32.94 | 2.57 |
1119 | 1127 | 4.305539 | TCTTTTCATCTGGGCTGAATGA | 57.694 | 40.909 | 0.00 | 0.00 | 32.94 | 2.57 |
1175 | 1183 | 2.628657 | GTTCGGCCCATATGACTAGACT | 59.371 | 50.000 | 3.65 | 0.00 | 0.00 | 3.24 |
1200 | 1208 | 7.201435 | GCTCGGAATTATTGTTTGGAATGAAAC | 60.201 | 37.037 | 0.00 | 0.00 | 36.53 | 2.78 |
1209 | 1234 | 3.425404 | CGGTGCTCGGAATTATTGTTTG | 58.575 | 45.455 | 0.00 | 0.00 | 34.75 | 2.93 |
1473 | 1808 | 2.663188 | GCGATCTCCATCCACGGC | 60.663 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
1575 | 1910 | 2.736995 | CGGCGAAGGTTGCGAGAA | 60.737 | 61.111 | 0.00 | 0.00 | 0.00 | 2.87 |
1613 | 1948 | 1.215423 | CCCCTCCCAATCCTTCGATTT | 59.785 | 52.381 | 0.00 | 0.00 | 36.54 | 2.17 |
1616 | 1951 | 0.030092 | ATCCCCTCCCAATCCTTCGA | 60.030 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1617 | 1952 | 0.109342 | CATCCCCTCCCAATCCTTCG | 59.891 | 60.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1618 | 1953 | 0.480252 | CCATCCCCTCCCAATCCTTC | 59.520 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1811 | 2148 | 3.553904 | ACGGACTAGTTAGACTCCCATC | 58.446 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1838 | 2175 | 2.115291 | GCCCAGACCTTGAATCGGC | 61.115 | 63.158 | 0.00 | 0.00 | 0.00 | 5.54 |
1839 | 2176 | 1.815421 | CGCCCAGACCTTGAATCGG | 60.815 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
1875 | 2212 | 1.684734 | GAAGCCGAGGTACCCCTGA | 60.685 | 63.158 | 8.74 | 0.00 | 42.86 | 3.86 |
1938 | 2275 | 2.431942 | CAGACGCGCCTAAACGGT | 60.432 | 61.111 | 5.73 | 0.00 | 34.25 | 4.83 |
1979 | 2334 | 0.106708 | AACACCGCACAGTCACATCT | 59.893 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1980 | 2335 | 0.235665 | CAACACCGCACAGTCACATC | 59.764 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1981 | 2336 | 0.179059 | TCAACACCGCACAGTCACAT | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1982 | 2337 | 1.087202 | GTCAACACCGCACAGTCACA | 61.087 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1983 | 2338 | 1.641677 | GTCAACACCGCACAGTCAC | 59.358 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
1984 | 2339 | 1.880796 | CGTCAACACCGCACAGTCA | 60.881 | 57.895 | 0.00 | 0.00 | 0.00 | 3.41 |
1985 | 2340 | 2.594962 | CCGTCAACACCGCACAGTC | 61.595 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
2001 | 2356 | 1.531149 | AGATTGCAACAGACGAAACCG | 59.469 | 47.619 | 0.00 | 0.00 | 0.00 | 4.44 |
2091 | 2446 | 2.041620 | AGCCCACATCATAACAAGGTGT | 59.958 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
2153 | 2508 | 1.605710 | AGCTCAAACATCACACACAGC | 59.394 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
2178 | 2533 | 1.592400 | GCAAACACAGCCACAAGCC | 60.592 | 57.895 | 0.00 | 0.00 | 45.47 | 4.35 |
2187 | 2542 | 3.370366 | GCTACTCAGATCTGCAAACACAG | 59.630 | 47.826 | 18.36 | 10.48 | 39.12 | 3.66 |
2191 | 2546 | 3.305629 | CGAAGCTACTCAGATCTGCAAAC | 59.694 | 47.826 | 18.36 | 6.20 | 0.00 | 2.93 |
2261 | 2616 | 6.545666 | TGCCACAGGGTAATCTATACATTTTG | 59.454 | 38.462 | 0.00 | 0.00 | 36.17 | 2.44 |
2262 | 2617 | 6.668645 | TGCCACAGGGTAATCTATACATTTT | 58.331 | 36.000 | 0.00 | 0.00 | 36.17 | 1.82 |
2264 | 2619 | 5.904984 | TGCCACAGGGTAATCTATACATT | 57.095 | 39.130 | 0.00 | 0.00 | 36.17 | 2.71 |
2269 | 2624 | 5.103940 | ACTTGAATGCCACAGGGTAATCTAT | 60.104 | 40.000 | 0.00 | 0.00 | 36.17 | 1.98 |
2270 | 2625 | 4.227300 | ACTTGAATGCCACAGGGTAATCTA | 59.773 | 41.667 | 0.00 | 0.00 | 36.17 | 1.98 |
2273 | 2628 | 3.456380 | ACTTGAATGCCACAGGGTAAT | 57.544 | 42.857 | 0.00 | 0.00 | 36.17 | 1.89 |
2277 | 2632 | 4.806640 | AATTTACTTGAATGCCACAGGG | 57.193 | 40.909 | 0.00 | 0.00 | 37.18 | 4.45 |
2284 | 2639 | 4.993905 | AGGCGGTAAATTTACTTGAATGC | 58.006 | 39.130 | 23.89 | 17.52 | 34.16 | 3.56 |
2292 | 2647 | 4.251268 | AGTGTGAGAGGCGGTAAATTTAC | 58.749 | 43.478 | 18.30 | 18.30 | 0.00 | 2.01 |
2294 | 2649 | 3.418684 | AGTGTGAGAGGCGGTAAATTT | 57.581 | 42.857 | 0.00 | 0.00 | 0.00 | 1.82 |
2295 | 2650 | 4.251268 | GTTAGTGTGAGAGGCGGTAAATT | 58.749 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
2418 | 2773 | 9.712305 | AGAGGACTTTATTATCATGATTTACCG | 57.288 | 33.333 | 14.65 | 1.67 | 0.00 | 4.02 |
2760 | 3115 | 5.613358 | AAGGCTTCAGTTTTTCGATGTAG | 57.387 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
2817 | 3172 | 4.141620 | ACAGAAGTCTATACCAGCAATGGG | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
2850 | 3205 | 9.513906 | TTGTGATCTGTAAATCATAGGAAAACA | 57.486 | 29.630 | 0.00 | 0.00 | 37.93 | 2.83 |
2855 | 3210 | 9.330063 | GAACATTGTGATCTGTAAATCATAGGA | 57.670 | 33.333 | 0.00 | 0.00 | 37.93 | 2.94 |
2884 | 3239 | 5.768980 | TCAGGATGAAAGAAGATGAGGTT | 57.231 | 39.130 | 0.00 | 0.00 | 45.97 | 3.50 |
3122 | 3477 | 6.869913 | TGTTATAGAGAAACGTACCACCAAAG | 59.130 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
3346 | 3701 | 7.599998 | AGCTGATGTTTTCCAATCAACATAAAC | 59.400 | 33.333 | 0.00 | 0.00 | 42.46 | 2.01 |
3479 | 3835 | 5.269991 | TCTTATATTATGGGACGGAGGGAG | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
3480 | 3836 | 5.269991 | CTCTTATATTATGGGACGGAGGGA | 58.730 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
3481 | 3837 | 4.141914 | GCTCTTATATTATGGGACGGAGGG | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3482 | 3838 | 4.440250 | CGCTCTTATATTATGGGACGGAGG | 60.440 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3483 | 3839 | 4.158025 | ACGCTCTTATATTATGGGACGGAG | 59.842 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
3484 | 3840 | 4.084287 | ACGCTCTTATATTATGGGACGGA | 58.916 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
3485 | 3841 | 4.451629 | ACGCTCTTATATTATGGGACGG | 57.548 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
3486 | 3842 | 6.780706 | AAAACGCTCTTATATTATGGGACG | 57.219 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
3509 | 3865 | 9.748708 | ACGTTTTTGACACTACACTAGTATAAA | 57.251 | 29.630 | 0.00 | 0.00 | 37.23 | 1.40 |
3510 | 3866 | 9.748708 | AACGTTTTTGACACTACACTAGTATAA | 57.251 | 29.630 | 0.00 | 0.00 | 37.23 | 0.98 |
3511 | 3867 | 9.398170 | GAACGTTTTTGACACTACACTAGTATA | 57.602 | 33.333 | 0.46 | 0.00 | 37.23 | 1.47 |
3512 | 3868 | 8.139989 | AGAACGTTTTTGACACTACACTAGTAT | 58.860 | 33.333 | 0.46 | 0.00 | 37.23 | 2.12 |
3513 | 3869 | 7.483307 | AGAACGTTTTTGACACTACACTAGTA | 58.517 | 34.615 | 0.46 | 0.00 | 37.23 | 1.82 |
3514 | 3870 | 6.335777 | AGAACGTTTTTGACACTACACTAGT | 58.664 | 36.000 | 0.46 | 0.00 | 40.28 | 2.57 |
3515 | 3871 | 6.823678 | AGAACGTTTTTGACACTACACTAG | 57.176 | 37.500 | 0.46 | 0.00 | 0.00 | 2.57 |
3516 | 3872 | 8.876275 | ATAAGAACGTTTTTGACACTACACTA | 57.124 | 30.769 | 13.87 | 0.00 | 0.00 | 2.74 |
3517 | 3873 | 7.781548 | ATAAGAACGTTTTTGACACTACACT | 57.218 | 32.000 | 13.87 | 0.00 | 0.00 | 3.55 |
3523 | 3879 | 9.498307 | CCCATAATATAAGAACGTTTTTGACAC | 57.502 | 33.333 | 13.87 | 0.00 | 0.00 | 3.67 |
3524 | 3880 | 9.451002 | TCCCATAATATAAGAACGTTTTTGACA | 57.549 | 29.630 | 13.87 | 0.01 | 0.00 | 3.58 |
3525 | 3881 | 9.712359 | GTCCCATAATATAAGAACGTTTTTGAC | 57.288 | 33.333 | 13.87 | 5.89 | 0.00 | 3.18 |
3526 | 3882 | 8.605746 | CGTCCCATAATATAAGAACGTTTTTGA | 58.394 | 33.333 | 13.87 | 2.81 | 0.00 | 2.69 |
3527 | 3883 | 7.853929 | CCGTCCCATAATATAAGAACGTTTTTG | 59.146 | 37.037 | 13.87 | 0.00 | 0.00 | 2.44 |
3528 | 3884 | 7.769970 | TCCGTCCCATAATATAAGAACGTTTTT | 59.230 | 33.333 | 9.22 | 9.22 | 0.00 | 1.94 |
3529 | 3885 | 7.274447 | TCCGTCCCATAATATAAGAACGTTTT | 58.726 | 34.615 | 0.46 | 0.00 | 0.00 | 2.43 |
3530 | 3886 | 6.819284 | TCCGTCCCATAATATAAGAACGTTT | 58.181 | 36.000 | 0.46 | 0.00 | 0.00 | 3.60 |
3531 | 3887 | 6.409524 | TCCGTCCCATAATATAAGAACGTT | 57.590 | 37.500 | 0.00 | 0.00 | 0.00 | 3.99 |
3532 | 3888 | 5.047519 | CCTCCGTCCCATAATATAAGAACGT | 60.048 | 44.000 | 0.00 | 0.00 | 0.00 | 3.99 |
3533 | 3889 | 5.184479 | TCCTCCGTCCCATAATATAAGAACG | 59.816 | 44.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3534 | 3890 | 6.600882 | TCCTCCGTCCCATAATATAAGAAC | 57.399 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
3535 | 3891 | 6.785963 | ACTTCCTCCGTCCCATAATATAAGAA | 59.214 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
3536 | 3892 | 6.320518 | ACTTCCTCCGTCCCATAATATAAGA | 58.679 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3537 | 3893 | 6.607004 | ACTTCCTCCGTCCCATAATATAAG | 57.393 | 41.667 | 0.00 | 0.00 | 0.00 | 1.73 |
3538 | 3894 | 7.243824 | ACTACTTCCTCCGTCCCATAATATAA | 58.756 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
3539 | 3895 | 6.797707 | ACTACTTCCTCCGTCCCATAATATA | 58.202 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
3540 | 3896 | 5.652324 | ACTACTTCCTCCGTCCCATAATAT | 58.348 | 41.667 | 0.00 | 0.00 | 0.00 | 1.28 |
3541 | 3897 | 5.070823 | ACTACTTCCTCCGTCCCATAATA | 57.929 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
3542 | 3898 | 3.924922 | ACTACTTCCTCCGTCCCATAAT | 58.075 | 45.455 | 0.00 | 0.00 | 0.00 | 1.28 |
3543 | 3899 | 3.393426 | ACTACTTCCTCCGTCCCATAA | 57.607 | 47.619 | 0.00 | 0.00 | 0.00 | 1.90 |
3544 | 3900 | 3.028850 | CAACTACTTCCTCCGTCCCATA | 58.971 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3545 | 3901 | 1.831736 | CAACTACTTCCTCCGTCCCAT | 59.168 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
3546 | 3902 | 1.263356 | CAACTACTTCCTCCGTCCCA | 58.737 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
3547 | 3903 | 0.108281 | GCAACTACTTCCTCCGTCCC | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
3548 | 3904 | 0.896226 | AGCAACTACTTCCTCCGTCC | 59.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3549 | 3905 | 2.745515 | AAGCAACTACTTCCTCCGTC | 57.254 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3550 | 3906 | 3.139077 | CAAAAGCAACTACTTCCTCCGT | 58.861 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
3551 | 3907 | 3.139077 | ACAAAAGCAACTACTTCCTCCG | 58.861 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
3552 | 3908 | 5.299531 | AGAAACAAAAGCAACTACTTCCTCC | 59.700 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3553 | 3909 | 6.378710 | AGAAACAAAAGCAACTACTTCCTC | 57.621 | 37.500 | 0.00 | 0.00 | 0.00 | 3.71 |
3554 | 3910 | 7.502561 | ACATAGAAACAAAAGCAACTACTTCCT | 59.497 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
3555 | 3911 | 7.649057 | ACATAGAAACAAAAGCAACTACTTCC | 58.351 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
3556 | 3912 | 8.342634 | TGACATAGAAACAAAAGCAACTACTTC | 58.657 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
3557 | 3913 | 8.220755 | TGACATAGAAACAAAAGCAACTACTT | 57.779 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
3558 | 3914 | 7.520614 | GCTGACATAGAAACAAAAGCAACTACT | 60.521 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3559 | 3915 | 6.578919 | GCTGACATAGAAACAAAAGCAACTAC | 59.421 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
3560 | 3916 | 6.262049 | TGCTGACATAGAAACAAAAGCAACTA | 59.738 | 34.615 | 0.00 | 0.00 | 36.54 | 2.24 |
3561 | 3917 | 5.067674 | TGCTGACATAGAAACAAAAGCAACT | 59.932 | 36.000 | 0.00 | 0.00 | 36.54 | 3.16 |
3675 | 4033 | 6.250819 | CCATTGTATTTCAGCAAACTACGAG | 58.749 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3774 | 4132 | 7.812648 | AGTGCATAAATATTTTACACGTGTGT | 58.187 | 30.769 | 30.83 | 15.70 | 46.87 | 3.72 |
3802 | 4160 | 3.571401 | AGCCACAAATCCTGTCTCAAAAG | 59.429 | 43.478 | 0.00 | 0.00 | 35.47 | 2.27 |
3918 | 4276 | 0.471617 | GATCCTGACTGATGTGGGGG | 59.528 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
3953 | 4311 | 1.826720 | ACTGCAATTGTATTGCCAGGG | 59.173 | 47.619 | 18.60 | 10.39 | 44.32 | 4.45 |
3980 | 4338 | 6.422333 | TGTAAGACCATTGAAAGGCATATCA | 58.578 | 36.000 | 0.00 | 0.00 | 0.00 | 2.15 |
4004 | 4362 | 0.983467 | GGAATGCACCCCCAAATGTT | 59.017 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4198 | 4556 | 5.790593 | ACACCAGTGAAATCATAACTACGT | 58.209 | 37.500 | 4.48 | 0.00 | 0.00 | 3.57 |
4439 | 4799 | 2.435372 | AATCATGTGTGCCGGGTTAT | 57.565 | 45.000 | 2.18 | 0.00 | 0.00 | 1.89 |
4617 | 4977 | 5.308237 | ACAACCTTCAGTCTCCAGAAGTAAT | 59.692 | 40.000 | 0.00 | 0.00 | 39.61 | 1.89 |
4647 | 5008 | 9.807649 | GCATTTTGGTCTTCAAGAATATACATT | 57.192 | 29.630 | 0.00 | 0.00 | 36.62 | 2.71 |
4648 | 5009 | 8.970020 | TGCATTTTGGTCTTCAAGAATATACAT | 58.030 | 29.630 | 0.00 | 0.00 | 36.62 | 2.29 |
4651 | 5039 | 8.461222 | CACTGCATTTTGGTCTTCAAGAATATA | 58.539 | 33.333 | 0.00 | 0.00 | 36.62 | 0.86 |
4908 | 5296 | 9.603298 | CATATAAGAATTGCATACACATGACAC | 57.397 | 33.333 | 0.00 | 0.00 | 33.67 | 3.67 |
4909 | 5297 | 8.785946 | CCATATAAGAATTGCATACACATGACA | 58.214 | 33.333 | 0.00 | 0.00 | 33.67 | 3.58 |
4910 | 5298 | 9.002600 | TCCATATAAGAATTGCATACACATGAC | 57.997 | 33.333 | 0.00 | 0.00 | 33.67 | 3.06 |
4911 | 5299 | 9.002600 | GTCCATATAAGAATTGCATACACATGA | 57.997 | 33.333 | 0.00 | 0.00 | 33.67 | 3.07 |
4912 | 5300 | 9.006839 | AGTCCATATAAGAATTGCATACACATG | 57.993 | 33.333 | 0.00 | 0.00 | 35.07 | 3.21 |
4915 | 5303 | 7.041167 | TGCAGTCCATATAAGAATTGCATACAC | 60.041 | 37.037 | 10.22 | 0.00 | 33.62 | 2.90 |
4922 | 5322 | 9.674824 | GAAATTCTGCAGTCCATATAAGAATTG | 57.325 | 33.333 | 14.67 | 0.00 | 41.24 | 2.32 |
4926 | 5326 | 8.985315 | ATTGAAATTCTGCAGTCCATATAAGA | 57.015 | 30.769 | 14.67 | 0.00 | 0.00 | 2.10 |
5051 | 5451 | 0.031917 | TCCCCATCATTGCAGGCATT | 60.032 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
5130 | 5530 | 2.552599 | TGGGACGCTGTTTTGTATGA | 57.447 | 45.000 | 0.00 | 0.00 | 0.00 | 2.15 |
5173 | 5618 | 2.984562 | TGAATCAAGATGCAGGCGTAA | 58.015 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
5179 | 5637 | 6.513180 | AGGCAATTTATGAATCAAGATGCAG | 58.487 | 36.000 | 6.27 | 0.00 | 33.14 | 4.41 |
5223 | 5681 | 1.078918 | CTCAGGCGTCAATGGAGCA | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
5295 | 5753 | 1.134128 | TGCTTGAAGTGCTCCAAGTCA | 60.134 | 47.619 | 0.46 | 0.00 | 41.21 | 3.41 |
5299 | 5757 | 0.183492 | ACCTGCTTGAAGTGCTCCAA | 59.817 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
5539 | 5997 | 0.526096 | GGCATAACCTTGCACATGCG | 60.526 | 55.000 | 0.00 | 0.00 | 43.72 | 4.73 |
5564 | 6022 | 1.524848 | TATCGCTTTTCCCGCACAAA | 58.475 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
5570 | 6028 | 1.461897 | ACACGTTTATCGCTTTTCCCG | 59.538 | 47.619 | 0.00 | 0.00 | 44.19 | 5.14 |
5579 | 6037 | 4.359041 | ACGTTGTGTTACACGTTTATCG | 57.641 | 40.909 | 11.07 | 10.50 | 46.00 | 2.92 |
5598 | 6056 | 3.000080 | GCCAACGCGTCTCTGAACG | 62.000 | 63.158 | 14.44 | 0.00 | 45.31 | 3.95 |
5608 | 6066 | 0.310854 | AAAAGGAAAGAGCCAACGCG | 59.689 | 50.000 | 3.53 | 3.53 | 41.18 | 6.01 |
5711 | 6170 | 3.705072 | ACACAAGTCCTACTATAGTGCCC | 59.295 | 47.826 | 15.90 | 1.11 | 32.43 | 5.36 |
5845 | 6314 | 1.378514 | CATGGTAAGCAGGCGGGTT | 60.379 | 57.895 | 7.33 | 7.33 | 40.94 | 4.11 |
5857 | 6326 | 0.388006 | CGACACAGCGACACATGGTA | 60.388 | 55.000 | 0.00 | 0.00 | 0.00 | 3.25 |
5884 | 6353 | 2.205074 | ACGATTCGTGGATGAGATTGC | 58.795 | 47.619 | 11.56 | 0.00 | 39.18 | 3.56 |
6359 | 6874 | 0.171455 | TTTGTGTGTTTGGTCGGCAC | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
6360 | 6875 | 0.171455 | GTTTGTGTGTTTGGTCGGCA | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
6361 | 6876 | 0.171455 | TGTTTGTGTGTTTGGTCGGC | 59.829 | 50.000 | 0.00 | 0.00 | 0.00 | 5.54 |
6362 | 6877 | 2.525055 | CTTGTTTGTGTGTTTGGTCGG | 58.475 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
6363 | 6878 | 2.525055 | CCTTGTTTGTGTGTTTGGTCG | 58.475 | 47.619 | 0.00 | 0.00 | 0.00 | 4.79 |
6364 | 6879 | 2.267426 | GCCTTGTTTGTGTGTTTGGTC | 58.733 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
6365 | 6880 | 1.403514 | CGCCTTGTTTGTGTGTTTGGT | 60.404 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.