AutoCloner

Multiple sequence alignment - TraesCS6A01G129300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G129300	chr6A	100.000	3554	0	0	1	3554	101353223	101356776	0.000000e+00	6564
1	TraesCS6A01G129300	chr6A	93.708	2066	98	16	1054	3102	101315187	101317237	0.000000e+00	3066
2	TraesCS6A01G129300	chr6A	98.453	1487	22	1	1	1486	101338668	101340154	0.000000e+00	2617
3	TraesCS6A01G129300	chr6A	93.519	432	16	5	3101	3522	101317396	101317825	1.800000e-177	632
4	TraesCS6A01G129300	chr6A	95.302	149	7	0	909	1057	101306426	101306574	1.650000e-58	237
5	TraesCS6A01G129300	chr6A	82.110	218	31	5	906	1117	588410942	588410727	2.820000e-41	180
6	TraesCS6A01G129300	chr6D	93.048	2661	150	14	885	3522	84084252	84086900	0.000000e+00	3856
7	TraesCS6A01G129300	chr6D	81.552	1778	239	48	941	2685	439922040	439920319	0.000000e+00	1384
8	TraesCS6A01G129300	chr6D	80.769	234	37	5	906	1133	440210756	440210525	3.650000e-40	176
9	TraesCS6A01G129300	chr6B	92.523	2675	165	17	863	3522	159702484	159705138	0.000000e+00	3799
10	TraesCS6A01G129300	chr6B	83.110	1794	249	25	935	2685	95237607	95235825	0.000000e+00	1585
11	TraesCS6A01G129300	chr6B	81.451	1833	249	51	886	2685	665162317	665160543	0.000000e+00	1417
12	TraesCS6A01G129300	chr6B	86.032	315	39	1	552	866	255977581	255977890	2.040000e-87	333
13	TraesCS6A01G129300	chr2D	83.085	1815	269	22	889	2686	493883340	493881547	0.000000e+00	1616
14	TraesCS6A01G129300	chr2A	84.539	1617	226	15	899	2497	639694726	639696336	0.000000e+00	1580
15	TraesCS6A01G129300	chr2A	93.333	885	34	2	1	865	767804617	767803738	0.000000e+00	1284
16	TraesCS6A01G129300	chr7A	79.913	1837	302	33	887	2683	219396886	219398695	0.000000e+00	1286
17	TraesCS6A01G129300	chr7A	84.979	233	17	5	3303	3522	628489111	628488884	1.660000e-53	220
18	TraesCS6A01G129300	chr7A	81.366	161	14	4	3306	3453	628523423	628523580	2.240000e-22	117
19	TraesCS6A01G129300	chr7B	92.110	545	43	0	2	546	107945877	107945333	0.000000e+00	769
20	TraesCS6A01G129300	chr7B	89.091	330	25	5	541	866	107941864	107941542	1.990000e-107	399
21	TraesCS6A01G129300	chr7B	83.691	233	20	12	3303	3522	589697678	589697451	1.670000e-48	204
22	TraesCS6A01G129300	chrUn	79.736	908	130	25	2	865	338656879	338657776	3.030000e-170	608
23	TraesCS6A01G129300	chr5B	79.736	908	130	25	2	865	569118234	569117337	3.030000e-170	608
24	TraesCS6A01G129300	chr5B	79.736	908	130	25	2	865	569135256	569134359	3.030000e-170	608
25	TraesCS6A01G129300	chr5B	79.736	908	130	28	2	865	569236295	569235398	3.030000e-170	608
26	TraesCS6A01G129300	chr3B	89.474	247	20	2	622	868	66468501	66468741	1.240000e-79	307
27	TraesCS6A01G129300	chr5D	84.878	205	13	8	3301	3491	331840061	331840261	1.300000e-44	191

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G129300	chr6A	101353223	101356776	3553	False	6564	6564	100.0000	1	3554	1	chr6A.!!$F3	3553
1	TraesCS6A01G129300	chr6A	101338668	101340154	1486	False	2617	2617	98.4530	1	1486	1	chr6A.!!$F2	1485
2	TraesCS6A01G129300	chr6A	101315187	101317825	2638	False	1849	3066	93.6135	1054	3522	2	chr6A.!!$F4	2468
3	TraesCS6A01G129300	chr6D	84084252	84086900	2648	False	3856	3856	93.0480	885	3522	1	chr6D.!!$F1	2637
4	TraesCS6A01G129300	chr6D	439920319	439922040	1721	True	1384	1384	81.5520	941	2685	1	chr6D.!!$R1	1744
5	TraesCS6A01G129300	chr6B	159702484	159705138	2654	False	3799	3799	92.5230	863	3522	1	chr6B.!!$F1	2659
6	TraesCS6A01G129300	chr6B	95235825	95237607	1782	True	1585	1585	83.1100	935	2685	1	chr6B.!!$R1	1750
7	TraesCS6A01G129300	chr6B	665160543	665162317	1774	True	1417	1417	81.4510	886	2685	1	chr6B.!!$R2	1799
8	TraesCS6A01G129300	chr2D	493881547	493883340	1793	True	1616	1616	83.0850	889	2686	1	chr2D.!!$R1	1797
9	TraesCS6A01G129300	chr2A	639694726	639696336	1610	False	1580	1580	84.5390	899	2497	1	chr2A.!!$F1	1598
10	TraesCS6A01G129300	chr2A	767803738	767804617	879	True	1284	1284	93.3330	1	865	1	chr2A.!!$R1	864
11	TraesCS6A01G129300	chr7A	219396886	219398695	1809	False	1286	1286	79.9130	887	2683	1	chr7A.!!$F1	1796
12	TraesCS6A01G129300	chr7B	107941542	107945877	4335	True	584	769	90.6005	2	866	2	chr7B.!!$R2	864
13	TraesCS6A01G129300	chrUn	338656879	338657776	897	False	608	608	79.7360	2	865	1	chrUn.!!$F1	863
14	TraesCS6A01G129300	chr5B	569117337	569118234	897	True	608	608	79.7360	2	865	1	chr5B.!!$R1	863
15	TraesCS6A01G129300	chr5B	569134359	569135256	897	True	608	608	79.7360	2	865	1	chr5B.!!$R2	863
16	TraesCS6A01G129300	chr5B	569235398	569236295	897	True	608	608	79.7360	2	865	1	chr5B.!!$R3	863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
641	4159	5.212532	TGCAAGAAAAATAAGCACACCAT	57.787	34.783	0.0	0.00	0.00	3.55	F
1199	4764	0.534203	GAGTTGCTCCGGACCAACAA	60.534	55.000	33.5	18.92	42.77	2.83	F
2421	6007	1.000955	GACAGGAAGATGTGTGGACGT	59.999	52.381	0.0	0.00	32.25	4.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2421	6007	0.036164	CGGGATCCAAGTCACCACAA	59.964	55.0	15.23	0.00	0.0	3.33	R
2525	6112	0.036732	AAAGTGAATCAGAGCCGGCA	59.963	50.0	31.54	8.23	0.0	5.69	R
3533	7362	0.108472	GTTGTGGGCCGTAGAGGTAC	60.108	60.0	0.00	0.00	43.7	3.34	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
641	4159	5.212532	TGCAAGAAAAATAAGCACACCAT	57.787	34.783	0.00	0.00	0.00	3.55
1199	4764	0.534203	GAGTTGCTCCGGACCAACAA	60.534	55.000	33.50	18.92	42.77	2.83
1207	4772	2.258286	GGACCAACAATGCCGTGC	59.742	61.111	0.00	0.00	0.00	5.34
1501	5066	4.487412	GGCTGCGCAACATGAGGC	62.487	66.667	13.05	9.53	0.00	4.70
1808	5373	8.211116	TCGGATAAGACTCTTGAGTTAACTAG	57.789	38.462	8.42	4.82	0.00	2.57
1812	5377	9.575783	GATAAGACTCTTGAGTTAACTAGGTTG	57.424	37.037	8.42	2.27	0.00	3.77
1840	5405	5.531287	GCTAATGTTCCTTCCATAACCGATT	59.469	40.000	0.00	0.00	0.00	3.34
1961	5533	3.277416	AGTAACTTGAGGGGGTCTTCT	57.723	47.619	0.00	0.00	0.00	2.85
1962	5534	3.174779	AGTAACTTGAGGGGGTCTTCTC	58.825	50.000	0.00	0.00	0.00	2.87
1963	5535	1.363246	AACTTGAGGGGGTCTTCTCC	58.637	55.000	0.00	0.00	0.00	3.71
2011	5596	4.083271	GGAACCTGCACTGAGTTTGTATTC	60.083	45.833	0.00	0.00	0.00	1.75
2167	5753	1.002502	GCACCCTCCCTAAAAGCGT	60.003	57.895	0.00	0.00	0.00	5.07
2250	5836	1.620822	ATGGTTTCTGCGAAAAGGCT	58.379	45.000	5.51	0.00	0.00	4.58
2309	5895	4.578105	GCACAAGAATCTGGCTAAGCTTAT	59.422	41.667	6.64	0.00	0.00	1.73
2314	5900	7.659390	ACAAGAATCTGGCTAAGCTTATCATAC	59.341	37.037	6.64	0.00	0.00	2.39
2319	5905	5.307976	TCTGGCTAAGCTTATCATACATGGT	59.692	40.000	6.64	0.00	0.00	3.55
2421	6007	1.000955	GACAGGAAGATGTGTGGACGT	59.999	52.381	0.00	0.00	32.25	4.34
2477	6063	7.392766	AGGTTTGTCCATCAAGATATCCATA	57.607	36.000	0.00	0.00	37.35	2.74
2478	6064	7.993416	AGGTTTGTCCATCAAGATATCCATAT	58.007	34.615	0.00	0.00	37.35	1.78
2493	6079	4.731313	TCCATATACTGCTGAGGAGAGA	57.269	45.455	8.31	0.00	0.00	3.10
2508	6094	2.238395	GGAGAGAAAGAGGGCAGTTGAT	59.762	50.000	0.00	0.00	0.00	2.57
2525	6112	1.055849	GATGGGTTGGGTTTGGCTTT	58.944	50.000	0.00	0.00	0.00	3.51
2546	6133	1.373570	CCGGCTCTGATTCACTTTCC	58.626	55.000	0.00	0.00	0.00	3.13
2563	6150	7.590279	TCACTTTCCGTCCTAAATGAAAAATC	58.410	34.615	0.00	0.00	0.00	2.17
2751	6392	7.412237	GCACTTTTGATGCATTGGAATAAGTTC	60.412	37.037	0.00	0.00	42.88	3.01
2776	6417	2.637382	TGTTCACTGCTTCCATAGTCCA	59.363	45.455	0.00	0.00	0.00	4.02
2777	6418	3.264193	TGTTCACTGCTTCCATAGTCCAT	59.736	43.478	0.00	0.00	0.00	3.41
2812	6453	4.892934	AGGATTAGTGCAGGAACAACAAAA	59.107	37.500	0.00	0.00	0.00	2.44
2813	6454	4.982295	GGATTAGTGCAGGAACAACAAAAC	59.018	41.667	0.00	0.00	0.00	2.43
2814	6455	5.451242	GGATTAGTGCAGGAACAACAAAACA	60.451	40.000	0.00	0.00	0.00	2.83
2815	6456	3.508744	AGTGCAGGAACAACAAAACAG	57.491	42.857	0.00	0.00	0.00	3.16
2844	6486	1.610673	ACTCATGTCGCCCTCCACT	60.611	57.895	0.00	0.00	0.00	4.00
2848	6490	1.021390	CATGTCGCCCTCCACTGTTC	61.021	60.000	0.00	0.00	0.00	3.18
3002	6656	0.392998	CAGATCGGTGGTTCAAGGGG	60.393	60.000	0.00	0.00	0.00	4.79
3039	6694	6.719370	TCCAACTTATTTCTGCTACAATTGGT	59.281	34.615	10.83	0.00	35.46	3.67
3095	6750	2.293955	TGCATGGGTTATCATGATTGCG	59.706	45.455	14.65	0.00	45.30	4.85
3138	6953	7.227116	CCAATTGGTTGTTGTTGAGAAAATCAT	59.773	33.333	16.90	0.00	33.93	2.45
3234	7053	5.586643	CCCTGCTTTAGTAAATCTCTTGGAC	59.413	44.000	0.00	0.00	0.00	4.02
3270	7090	3.304257	CTCGCATTAGATGAAGACCTCG	58.696	50.000	0.00	0.00	0.00	4.63
3356	7176	2.413837	ACTCATAGTGAAACGTGTGCC	58.586	47.619	0.00	0.00	45.86	5.01
3382	7206	7.132863	GTGATTGGTCTTGAAAGTCTGTTTAC	58.867	38.462	0.00	0.00	0.00	2.01
3419	7245	5.818136	TCTGTTGTCTTTTTCACTGGAAG	57.182	39.130	0.00	0.00	42.29	3.46
3522	7351	4.336280	AGAAGTTTGGGCCTCTAAATGTC	58.664	43.478	4.53	4.49	0.00	3.06
3523	7352	3.806949	AGTTTGGGCCTCTAAATGTCA	57.193	42.857	4.53	0.00	0.00	3.58
3524	7353	3.421844	AGTTTGGGCCTCTAAATGTCAC	58.578	45.455	4.53	0.00	0.00	3.67
3525	7354	2.107950	TTGGGCCTCTAAATGTCACG	57.892	50.000	4.53	0.00	0.00	4.35
3526	7355	0.251916	TGGGCCTCTAAATGTCACGG	59.748	55.000	4.53	0.00	0.00	4.94
3527	7356	0.539986	GGGCCTCTAAATGTCACGGA	59.460	55.000	0.84	0.00	0.00	4.69
3528	7357	1.141053	GGGCCTCTAAATGTCACGGAT	59.859	52.381	0.84	0.00	0.00	4.18
3529	7358	2.484889	GGCCTCTAAATGTCACGGATC	58.515	52.381	0.00	0.00	0.00	3.36
3530	7359	2.484889	GCCTCTAAATGTCACGGATCC	58.515	52.381	0.00	0.00	0.00	3.36
3531	7360	2.158957	GCCTCTAAATGTCACGGATCCA	60.159	50.000	13.41	0.00	0.00	3.41
3532	7361	3.681594	GCCTCTAAATGTCACGGATCCAA	60.682	47.826	13.41	0.00	0.00	3.53
3533	7362	4.122776	CCTCTAAATGTCACGGATCCAAG	58.877	47.826	13.41	3.05	0.00	3.61
3534	7363	4.383118	CCTCTAAATGTCACGGATCCAAGT	60.383	45.833	13.41	0.00	0.00	3.16
3535	7364	5.163447	CCTCTAAATGTCACGGATCCAAGTA	60.163	44.000	13.41	0.00	0.00	2.24
3536	7365	5.657474	TCTAAATGTCACGGATCCAAGTAC	58.343	41.667	13.41	4.63	0.00	2.73
3537	7366	2.981859	ATGTCACGGATCCAAGTACC	57.018	50.000	13.41	0.00	0.00	3.34
3538	7367	1.933021	TGTCACGGATCCAAGTACCT	58.067	50.000	13.41	0.00	0.00	3.08
3539	7368	1.822990	TGTCACGGATCCAAGTACCTC	59.177	52.381	13.41	0.00	0.00	3.85
3540	7369	2.100989	GTCACGGATCCAAGTACCTCT	58.899	52.381	13.41	0.00	0.00	3.69
3541	7370	3.285484	GTCACGGATCCAAGTACCTCTA	58.715	50.000	13.41	0.00	0.00	2.43
3542	7371	3.066481	GTCACGGATCCAAGTACCTCTAC	59.934	52.174	13.41	0.00	0.00	2.59
3543	7372	2.033049	CACGGATCCAAGTACCTCTACG	59.967	54.545	13.41	0.00	0.00	3.51
3544	7373	1.607628	CGGATCCAAGTACCTCTACGG	59.392	57.143	13.41	0.00	39.35	4.02
3545	7374	1.340568	GGATCCAAGTACCTCTACGGC	59.659	57.143	6.95	0.00	35.61	5.68
3546	7375	1.340568	GATCCAAGTACCTCTACGGCC	59.659	57.143	0.00	0.00	35.61	6.13
3547	7376	0.685458	TCCAAGTACCTCTACGGCCC	60.685	60.000	0.00	0.00	35.61	5.80
3548	7377	0.974010	CCAAGTACCTCTACGGCCCA	60.974	60.000	0.00	0.00	35.61	5.36
3549	7378	0.175073	CAAGTACCTCTACGGCCCAC	59.825	60.000	0.00	0.00	35.61	4.61
3550	7379	0.251922	AAGTACCTCTACGGCCCACA	60.252	55.000	0.00	0.00	35.61	4.17
3551	7380	0.251922	AGTACCTCTACGGCCCACAA	60.252	55.000	0.00	0.00	35.61	3.33
3552	7381	0.108472	GTACCTCTACGGCCCACAAC	60.108	60.000	0.00	0.00	35.61	3.32
3553	7382	1.259840	TACCTCTACGGCCCACAACC	61.260	60.000	0.00	0.00	35.61	3.77

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
491	493	2.366266	GCATGGAGGGGTTATACGTACA	59.634	50.000	0.00	0.00	0.00	2.90
641	4159	0.703488	TCATTCAATGTGGGGCAGGA	59.297	50.000	0.00	0.00	0.00	3.86
677	4196	0.466372	TGGTGTGGCATTCGGTTTCA	60.466	50.000	0.00	0.00	0.00	2.69
678	4197	0.240945	CTGGTGTGGCATTCGGTTTC	59.759	55.000	0.00	0.00	0.00	2.78
970	4511	4.961511	AGCGGCGTCTTCGTTGCA	62.962	61.111	9.37	0.00	40.01	4.08
1207	4772	7.590322	GCTCAAGATGCTATTTGTTACATGATG	59.410	37.037	0.00	0.00	0.00	3.07
1501	5066	2.162681	GGGAATGTCCAGTTCACCAAG	58.837	52.381	0.00	0.00	38.64	3.61
1808	5373	3.367395	GGAAGGAACATTAGCAAGCAACC	60.367	47.826	0.00	0.00	0.00	3.77
1812	5377	5.450550	GGTTATGGAAGGAACATTAGCAAGC	60.451	44.000	0.00	0.00	0.00	4.01
1840	5405	7.523293	TTTCACTTCTAAAATCCAGATGCAA	57.477	32.000	0.00	0.00	0.00	4.08
1961	5533	1.899814	ACTACATTCTCAACTGGCGGA	59.100	47.619	0.00	0.00	0.00	5.54
1962	5534	2.386661	ACTACATTCTCAACTGGCGG	57.613	50.000	0.00	0.00	0.00	6.13
1963	5535	7.307396	CCATATAAACTACATTCTCAACTGGCG	60.307	40.741	0.00	0.00	0.00	5.69
2167	5753	3.054508	TGATCCCATACTGTGATGCACAA	60.055	43.478	1.64	0.00	44.08	3.33
2250	5836	1.300620	CGGCTTCCACTTCACGTCA	60.301	57.895	0.00	0.00	0.00	4.35
2319	5905	0.106918	AGTTGCCGTCAGGTTGGAAA	60.107	50.000	0.00	0.00	40.50	3.13
2421	6007	0.036164	CGGGATCCAAGTCACCACAA	59.964	55.000	15.23	0.00	0.00	3.33
2477	6063	3.960102	CCTCTTTCTCTCCTCAGCAGTAT	59.040	47.826	0.00	0.00	0.00	2.12
2478	6064	3.360867	CCTCTTTCTCTCCTCAGCAGTA	58.639	50.000	0.00	0.00	0.00	2.74
2493	6079	0.779997	ACCCATCAACTGCCCTCTTT	59.220	50.000	0.00	0.00	0.00	2.52
2508	6094	1.977293	GCAAAGCCAAACCCAACCCA	61.977	55.000	0.00	0.00	0.00	4.51
2525	6112	0.036732	AAAGTGAATCAGAGCCGGCA	59.963	50.000	31.54	8.23	0.00	5.69
2546	6133	4.970003	GCCGATGATTTTTCATTTAGGACG	59.030	41.667	8.99	0.00	0.00	4.79
2563	6150	3.649073	TGATAAGAATACGGTGCCGATG	58.351	45.455	18.16	0.00	42.83	3.84
2711	6352	4.879545	TCAAAAGTGCTCGGTTCTAACTTT	59.120	37.500	0.00	0.00	41.54	2.66
2713	6354	4.067972	TCAAAAGTGCTCGGTTCTAACT	57.932	40.909	0.00	0.00	0.00	2.24
2723	6364	3.581024	TCCAATGCATCAAAAGTGCTC	57.419	42.857	0.00	0.00	42.92	4.26
2725	6366	5.870978	ACTTATTCCAATGCATCAAAAGTGC	59.129	36.000	0.00	0.00	42.81	4.40
2751	6392	4.005650	ACTATGGAAGCAGTGAACACATG	58.994	43.478	7.68	0.00	0.00	3.21
2776	6417	8.097038	CCTGCACTAATCCTTATGTATGTGTAT	58.903	37.037	0.00	0.00	0.00	2.29
2777	6418	7.289084	TCCTGCACTAATCCTTATGTATGTGTA	59.711	37.037	0.00	0.00	0.00	2.90
2812	6453	2.224621	ACATGAGTGCTTGCTTACCTGT	60.225	45.455	0.00	0.00	0.00	4.00
2813	6454	2.417933	GACATGAGTGCTTGCTTACCTG	59.582	50.000	0.00	0.00	0.00	4.00
2814	6455	2.704572	GACATGAGTGCTTGCTTACCT	58.295	47.619	0.00	0.00	0.00	3.08
2815	6456	1.394917	CGACATGAGTGCTTGCTTACC	59.605	52.381	0.00	0.00	0.00	2.85
2844	6486	4.133820	CACTGTCCACACAAATAGGAACA	58.866	43.478	0.00	0.00	32.30	3.18
2848	6490	5.047306	TCTCTACACTGTCCACACAAATAGG	60.047	44.000	0.00	0.00	29.82	2.57
2977	6631	1.153369	AACCACCGATCTGCATCCG	60.153	57.895	0.00	0.00	0.00	4.18
3039	6694	8.659925	TTTTGTTCTAGGACATTTACGTACAA	57.340	30.769	4.23	0.00	0.00	2.41
3095	6750	7.581011	CCAATTGGTTTACTCAACTATTTGC	57.419	36.000	16.90	0.00	36.56	3.68
3152	6967	7.718314	TCTCCAAATGGAAGAACATGAGATATG	59.282	37.037	0.00	0.00	44.91	1.78
3204	7023	4.944317	AGATTTACTAAAGCAGGGCAACTC	59.056	41.667	0.00	0.00	0.00	3.01
3234	7053	7.710896	TCTAATGCGAGGATATGTCATATGAG	58.289	38.462	10.15	0.71	0.00	2.90
3356	7176	3.809832	ACAGACTTTCAAGACCAATCACG	59.190	43.478	0.00	0.00	0.00	4.35
3412	7238	1.273759	TGCATCTCTGAGCTTCCAGT	58.726	50.000	0.00	0.00	35.71	4.00
3419	7245	2.328819	AGGTCAATGCATCTCTGAGC	57.671	50.000	17.39	17.39	37.75	4.26
3522	7351	2.033049	CGTAGAGGTACTTGGATCCGTG	59.967	54.545	7.39	4.71	41.55	4.94
3523	7352	2.295885	CGTAGAGGTACTTGGATCCGT	58.704	52.381	7.39	2.09	41.55	4.69
3524	7353	1.607628	CCGTAGAGGTACTTGGATCCG	59.392	57.143	7.39	0.00	41.55	4.18
3525	7354	1.340568	GCCGTAGAGGTACTTGGATCC	59.659	57.143	4.20	4.20	41.55	3.36
3526	7355	1.340568	GGCCGTAGAGGTACTTGGATC	59.659	57.143	0.00	0.00	41.55	3.36
3527	7356	1.411041	GGCCGTAGAGGTACTTGGAT	58.589	55.000	0.00	0.00	41.55	3.41
3528	7357	0.685458	GGGCCGTAGAGGTACTTGGA	60.685	60.000	0.00	0.00	41.55	3.53
3529	7358	0.974010	TGGGCCGTAGAGGTACTTGG	60.974	60.000	0.00	0.00	41.55	3.61
3530	7359	0.175073	GTGGGCCGTAGAGGTACTTG	59.825	60.000	0.00	0.00	41.55	3.16
3531	7360	0.251922	TGTGGGCCGTAGAGGTACTT	60.252	55.000	0.00	0.00	41.55	2.24
3533	7362	0.108472	GTTGTGGGCCGTAGAGGTAC	60.108	60.000	0.00	0.00	43.70	3.34
3534	7363	1.259840	GGTTGTGGGCCGTAGAGGTA	61.260	60.000	0.00	0.00	43.70	3.08
3535	7364	2.590114	GGTTGTGGGCCGTAGAGGT	61.590	63.158	0.00	0.00	43.70	3.85
3536	7365	2.267961	GGTTGTGGGCCGTAGAGG	59.732	66.667	0.00	0.00	44.97	3.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.