Multiple sequence alignment - TraesCS6A01G128000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G128000 chr6A 100.000 3284 0 0 1 3284 100733435 100736718 0.000000e+00 6065.0
1 TraesCS6A01G128000 chr6A 87.476 1541 144 18 752 2265 100426629 100425111 0.000000e+00 1731.0
2 TraesCS6A01G128000 chr6A 87.552 241 20 7 3044 3274 100366847 100366607 1.500000e-68 270.0
3 TraesCS6A01G128000 chr6A 92.432 185 13 1 741 925 100733491 100733674 2.510000e-66 263.0
4 TraesCS6A01G128000 chr6A 92.432 185 13 1 57 240 100734175 100734359 2.510000e-66 263.0
5 TraesCS6A01G128000 chr6A 83.730 252 30 6 1 243 100426703 100426454 9.170000e-56 228.0
6 TraesCS6A01G128000 chr6A 86.458 96 8 1 2275 2370 100425072 100424982 2.090000e-17 100.0
7 TraesCS6A01G128000 chr6B 91.632 2438 121 32 697 3080 159371613 159374021 0.000000e+00 3295.0
8 TraesCS6A01G128000 chr6B 87.476 1541 143 19 752 2265 158289354 158287837 0.000000e+00 1731.0
9 TraesCS6A01G128000 chr6B 86.671 1553 155 26 741 2265 159284484 159286012 0.000000e+00 1674.0
10 TraesCS6A01G128000 chr6B 87.500 240 29 1 2 240 159284429 159284668 3.230000e-70 276.0
11 TraesCS6A01G128000 chr6B 86.722 241 22 6 3044 3274 158192750 158192510 3.250000e-65 259.0
12 TraesCS6A01G128000 chr6B 91.351 185 15 1 57 240 159371656 159371840 5.440000e-63 252.0
13 TraesCS6A01G128000 chr6B 84.127 252 29 7 1 243 158289428 158289179 1.970000e-57 233.0
14 TraesCS6A01G128000 chr6B 76.712 292 38 21 2464 2749 158287678 158287411 5.720000e-28 135.0
15 TraesCS6A01G128000 chr6B 84.800 125 14 1 2275 2399 158287798 158287679 1.600000e-23 121.0
16 TraesCS6A01G128000 chr6B 89.855 69 2 2 2275 2343 159286051 159286114 2.100000e-12 84.2
17 TraesCS6A01G128000 chr6D 85.506 1711 161 37 741 2393 83489726 83491407 0.000000e+00 1705.0
18 TraesCS6A01G128000 chr6D 86.957 1541 150 20 753 2265 83225194 83223677 0.000000e+00 1685.0
19 TraesCS6A01G128000 chr6D 89.256 242 24 2 1 240 83489670 83489911 5.330000e-78 302.0
20 TraesCS6A01G128000 chr6D 87.137 241 21 7 3044 3274 83209827 83209587 6.990000e-67 265.0
21 TraesCS6A01G128000 chr6D 86.056 251 25 6 3044 3284 46902772 46903022 9.040000e-66 261.0
22 TraesCS6A01G128000 chr6D 85.714 252 25 6 1 243 83225269 83225020 4.210000e-64 255.0
23 TraesCS6A01G128000 chr6D 84.000 125 14 1 2275 2399 83223638 83223520 7.450000e-22 115.0
24 TraesCS6A01G128000 chr5B 91.928 223 16 2 241 461 449977685 449977463 8.850000e-81 311.0
25 TraesCS6A01G128000 chr5B 92.925 212 13 2 241 450 450031071 450030860 1.140000e-79 307.0
26 TraesCS6A01G128000 chr4A 91.667 216 17 1 247 461 535241067 535240852 6.890000e-77 298.0
27 TraesCS6A01G128000 chr4A 90.991 222 19 1 241 461 616718836 616719057 6.890000e-77 298.0
28 TraesCS6A01G128000 chr4A 90.583 223 19 2 241 461 618461268 618461046 8.910000e-76 294.0
29 TraesCS6A01G128000 chr4A 86.758 219 25 3 477 691 57532262 57532044 1.180000e-59 241.0
30 TraesCS6A01G128000 chr4A 86.574 216 26 3 477 691 618460972 618460759 5.480000e-58 235.0
31 TraesCS6A01G128000 chr5A 90.308 227 20 2 237 461 75385100 75384874 2.480000e-76 296.0
32 TraesCS6A01G128000 chr5A 87.037 216 25 3 477 691 367068309 367068096 1.180000e-59 241.0
33 TraesCS6A01G128000 chr2A 91.981 212 15 2 241 450 603684185 603684396 2.480000e-76 296.0
34 TraesCS6A01G128000 chr2A 86.574 216 26 3 477 691 603684481 603684694 5.480000e-58 235.0
35 TraesCS6A01G128000 chr2B 89.868 227 21 2 236 461 557239549 557239774 1.150000e-74 291.0
36 TraesCS6A01G128000 chr2B 86.977 215 28 0 477 691 181124887 181125101 3.270000e-60 243.0
37 TraesCS6A01G128000 chr3A 90.135 223 20 2 241 461 1874169 1873947 4.150000e-74 289.0
38 TraesCS6A01G128000 chr3A 86.574 216 26 3 477 691 1873873 1873660 5.480000e-58 235.0
39 TraesCS6A01G128000 chr7A 87.907 215 26 0 477 691 188573195 188572981 1.510000e-63 254.0
40 TraesCS6A01G128000 chr7A 87.037 216 25 3 477 691 598253213 598253426 1.180000e-59 241.0
41 TraesCS6A01G128000 chr3B 86.636 217 23 6 477 691 693740607 693740395 5.480000e-58 235.0
42 TraesCS6A01G128000 chrUn 90.000 50 2 1 2404 2450 134238948 134238997 9.840000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G128000 chr6A 100733435 100736718 3283 False 2197.000000 6065 94.954667 1 3284 3 chr6A.!!$F1 3283
1 TraesCS6A01G128000 chr6A 100424982 100426703 1721 True 686.333333 1731 85.888000 1 2370 3 chr6A.!!$R2 2369
2 TraesCS6A01G128000 chr6B 159371613 159374021 2408 False 1773.500000 3295 91.491500 57 3080 2 chr6B.!!$F2 3023
3 TraesCS6A01G128000 chr6B 159284429 159286114 1685 False 678.066667 1674 88.008667 2 2343 3 chr6B.!!$F1 2341
4 TraesCS6A01G128000 chr6B 158287411 158289428 2017 True 555.000000 1731 83.278750 1 2749 4 chr6B.!!$R2 2748
5 TraesCS6A01G128000 chr6D 83489670 83491407 1737 False 1003.500000 1705 87.381000 1 2393 2 chr6D.!!$F2 2392
6 TraesCS6A01G128000 chr6D 83223520 83225269 1749 True 685.000000 1685 85.557000 1 2399 3 chr6D.!!$R2 2398
7 TraesCS6A01G128000 chr4A 618460759 618461268 509 True 264.500000 294 88.578500 241 691 2 chr4A.!!$R3 450
8 TraesCS6A01G128000 chr2A 603684185 603684694 509 False 265.500000 296 89.277500 241 691 2 chr2A.!!$F1 450
9 TraesCS6A01G128000 chr3A 1873660 1874169 509 True 262.000000 289 88.354500 241 691 2 chr3A.!!$R1 450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 286 0.106469 TTGGGGCTAGTGTTGCACAA 60.106 50.0 2.01 0.0 36.74 3.33 F
1003 1070 0.250209 CGCAGGAGGAATCAGGATGG 60.250 60.0 0.00 0.0 36.16 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 1766 0.038599 AATGCTGTCCTCATGCCACA 59.961 50.0 0.00 0.00 0.00 4.17 R
2923 3080 0.528924 GCAAGGTGCATCATGAAGCA 59.471 50.0 20.99 20.99 44.26 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.202336 GCTTGTGCTGTTGTGCTTCTT 60.202 47.619 0.00 0.00 36.03 2.52
41 42 2.736400 GCTTGTGCTGTTGTGCTTCTTT 60.736 45.455 0.00 0.00 36.03 2.52
42 43 3.514645 CTTGTGCTGTTGTGCTTCTTTT 58.485 40.909 0.00 0.00 0.00 2.27
43 44 2.878580 TGTGCTGTTGTGCTTCTTTTG 58.121 42.857 0.00 0.00 0.00 2.44
44 45 2.195922 GTGCTGTTGTGCTTCTTTTGG 58.804 47.619 0.00 0.00 0.00 3.28
45 46 1.211743 GCTGTTGTGCTTCTTTTGGC 58.788 50.000 0.00 0.00 0.00 4.52
46 47 1.202452 GCTGTTGTGCTTCTTTTGGCT 60.202 47.619 0.00 0.00 0.00 4.75
47 48 2.735823 CTGTTGTGCTTCTTTTGGCTC 58.264 47.619 0.00 0.00 0.00 4.70
48 49 2.098614 TGTTGTGCTTCTTTTGGCTCA 58.901 42.857 0.00 0.00 0.00 4.26
49 50 2.495270 TGTTGTGCTTCTTTTGGCTCAA 59.505 40.909 0.00 0.00 38.84 3.02
50 51 2.869233 TGTGCTTCTTTTGGCTCAAC 57.131 45.000 0.00 0.00 0.00 3.18
51 52 1.065401 TGTGCTTCTTTTGGCTCAACG 59.935 47.619 0.00 0.00 0.00 4.10
52 53 0.667993 TGCTTCTTTTGGCTCAACGG 59.332 50.000 0.00 0.00 0.00 4.44
53 54 0.668535 GCTTCTTTTGGCTCAACGGT 59.331 50.000 0.00 0.00 0.00 4.83
54 55 1.877443 GCTTCTTTTGGCTCAACGGTA 59.123 47.619 0.00 0.00 0.00 4.02
55 56 2.095718 GCTTCTTTTGGCTCAACGGTAG 60.096 50.000 0.00 0.00 0.00 3.18
56 57 2.922740 TCTTTTGGCTCAACGGTAGT 57.077 45.000 0.00 0.00 0.00 2.73
57 58 2.489971 TCTTTTGGCTCAACGGTAGTG 58.510 47.619 0.00 0.00 0.00 2.74
58 59 0.948678 TTTTGGCTCAACGGTAGTGC 59.051 50.000 0.00 0.00 0.00 4.40
59 60 0.887387 TTTGGCTCAACGGTAGTGCC 60.887 55.000 8.45 8.45 43.89 5.01
60 61 2.436115 GGCTCAACGGTAGTGCCC 60.436 66.667 5.11 0.00 39.18 5.36
61 62 2.663196 GCTCAACGGTAGTGCCCT 59.337 61.111 0.00 0.00 0.00 5.19
62 63 1.003718 GCTCAACGGTAGTGCCCTT 60.004 57.895 0.00 0.00 0.00 3.95
63 64 1.019805 GCTCAACGGTAGTGCCCTTC 61.020 60.000 0.00 0.00 0.00 3.46
64 65 0.608640 CTCAACGGTAGTGCCCTTCT 59.391 55.000 0.00 0.00 0.00 2.85
65 66 0.320374 TCAACGGTAGTGCCCTTCTG 59.680 55.000 0.00 0.00 0.00 3.02
66 67 1.003718 AACGGTAGTGCCCTTCTGC 60.004 57.895 0.00 0.00 0.00 4.26
67 68 1.764571 AACGGTAGTGCCCTTCTGCA 61.765 55.000 0.00 0.00 39.37 4.41
68 69 1.003839 CGGTAGTGCCCTTCTGCAA 60.004 57.895 0.00 0.00 44.11 4.08
69 70 1.298859 CGGTAGTGCCCTTCTGCAAC 61.299 60.000 0.00 0.00 44.11 4.17
70 71 0.250727 GGTAGTGCCCTTCTGCAACA 60.251 55.000 0.00 0.00 44.11 3.33
71 72 1.614317 GGTAGTGCCCTTCTGCAACAT 60.614 52.381 0.00 0.00 44.11 2.71
72 73 1.740025 GTAGTGCCCTTCTGCAACATC 59.260 52.381 0.00 0.00 44.11 3.06
73 74 0.957395 AGTGCCCTTCTGCAACATCG 60.957 55.000 0.00 0.00 44.11 3.84
74 75 1.675310 TGCCCTTCTGCAACATCGG 60.675 57.895 0.00 0.00 38.56 4.18
75 76 1.377202 GCCCTTCTGCAACATCGGA 60.377 57.895 0.00 0.00 0.00 4.55
76 77 0.749454 GCCCTTCTGCAACATCGGAT 60.749 55.000 0.00 0.00 0.00 4.18
77 78 1.475034 GCCCTTCTGCAACATCGGATA 60.475 52.381 0.00 0.00 0.00 2.59
78 79 2.487934 CCCTTCTGCAACATCGGATAG 58.512 52.381 0.00 0.00 0.00 2.08
79 80 2.487934 CCTTCTGCAACATCGGATAGG 58.512 52.381 0.00 0.00 0.00 2.57
80 81 2.487934 CTTCTGCAACATCGGATAGGG 58.512 52.381 0.00 0.00 0.00 3.53
81 82 1.496060 TCTGCAACATCGGATAGGGT 58.504 50.000 0.00 0.00 0.00 4.34
82 83 2.673258 TCTGCAACATCGGATAGGGTA 58.327 47.619 0.00 0.00 0.00 3.69
83 84 3.239449 TCTGCAACATCGGATAGGGTAT 58.761 45.455 0.00 0.00 0.00 2.73
84 85 3.006859 TCTGCAACATCGGATAGGGTATG 59.993 47.826 0.00 0.00 0.00 2.39
85 86 2.969262 TGCAACATCGGATAGGGTATGA 59.031 45.455 0.00 0.00 0.00 2.15
86 87 3.244078 TGCAACATCGGATAGGGTATGAC 60.244 47.826 0.00 0.00 0.00 3.06
87 88 3.575630 CAACATCGGATAGGGTATGACG 58.424 50.000 0.00 0.00 0.00 4.35
88 89 3.150458 ACATCGGATAGGGTATGACGA 57.850 47.619 0.00 0.00 34.70 4.20
89 90 3.493334 ACATCGGATAGGGTATGACGAA 58.507 45.455 0.00 0.00 33.86 3.85
90 91 3.255149 ACATCGGATAGGGTATGACGAAC 59.745 47.826 0.00 0.00 33.86 3.95
91 92 3.219176 TCGGATAGGGTATGACGAACT 57.781 47.619 0.00 0.00 0.00 3.01
92 93 3.559069 TCGGATAGGGTATGACGAACTT 58.441 45.455 0.00 0.00 0.00 2.66
93 94 3.317149 TCGGATAGGGTATGACGAACTTG 59.683 47.826 0.00 0.00 0.00 3.16
94 95 3.067742 CGGATAGGGTATGACGAACTTGT 59.932 47.826 0.00 0.00 0.00 3.16
95 96 4.618965 GGATAGGGTATGACGAACTTGTC 58.381 47.826 0.00 0.00 39.37 3.18
104 105 4.203950 TGACGAACTTGTCAATTTTCGG 57.796 40.909 23.21 12.13 45.40 4.30
105 106 3.002862 TGACGAACTTGTCAATTTTCGGG 59.997 43.478 23.21 7.13 45.40 5.14
106 107 2.946990 ACGAACTTGTCAATTTTCGGGT 59.053 40.909 23.21 9.19 44.01 5.28
107 108 3.002965 ACGAACTTGTCAATTTTCGGGTC 59.997 43.478 23.21 5.26 44.01 4.46
108 109 3.002862 CGAACTTGTCAATTTTCGGGTCA 59.997 43.478 16.38 0.00 37.72 4.02
109 110 4.320202 CGAACTTGTCAATTTTCGGGTCAT 60.320 41.667 16.38 0.00 37.72 3.06
110 111 4.766404 ACTTGTCAATTTTCGGGTCATC 57.234 40.909 0.00 0.00 0.00 2.92
111 112 3.188460 ACTTGTCAATTTTCGGGTCATCG 59.812 43.478 0.00 0.00 0.00 3.84
112 113 2.080693 TGTCAATTTTCGGGTCATCGG 58.919 47.619 0.00 0.00 0.00 4.18
113 114 2.289756 TGTCAATTTTCGGGTCATCGGA 60.290 45.455 0.00 0.00 0.00 4.55
114 115 2.745281 GTCAATTTTCGGGTCATCGGAA 59.255 45.455 0.00 0.00 33.68 4.30
115 116 3.006940 TCAATTTTCGGGTCATCGGAAG 58.993 45.455 0.00 0.00 36.33 3.46
116 117 2.747446 CAATTTTCGGGTCATCGGAAGT 59.253 45.455 0.00 0.00 36.33 3.01
117 118 2.088950 TTTTCGGGTCATCGGAAGTC 57.911 50.000 0.00 0.00 36.33 3.01
118 119 1.263356 TTTCGGGTCATCGGAAGTCT 58.737 50.000 0.00 0.00 36.33 3.24
119 120 0.530744 TTCGGGTCATCGGAAGTCTG 59.469 55.000 0.00 0.00 32.13 3.51
120 121 0.611062 TCGGGTCATCGGAAGTCTGT 60.611 55.000 0.00 0.00 0.00 3.41
121 122 0.179134 CGGGTCATCGGAAGTCTGTC 60.179 60.000 0.00 0.00 0.00 3.51
122 123 0.895530 GGGTCATCGGAAGTCTGTCA 59.104 55.000 0.00 0.00 0.00 3.58
123 124 1.275291 GGGTCATCGGAAGTCTGTCAA 59.725 52.381 0.00 0.00 0.00 3.18
124 125 2.289444 GGGTCATCGGAAGTCTGTCAAA 60.289 50.000 0.00 0.00 0.00 2.69
125 126 2.996621 GGTCATCGGAAGTCTGTCAAAG 59.003 50.000 0.00 0.00 0.00 2.77
126 127 3.555168 GGTCATCGGAAGTCTGTCAAAGT 60.555 47.826 0.00 0.00 0.00 2.66
127 128 3.430218 GTCATCGGAAGTCTGTCAAAGTG 59.570 47.826 0.00 0.00 0.00 3.16
128 129 1.865865 TCGGAAGTCTGTCAAAGTGC 58.134 50.000 0.00 0.00 0.00 4.40
129 130 0.868406 CGGAAGTCTGTCAAAGTGCC 59.132 55.000 0.00 0.00 0.00 5.01
130 131 1.541233 CGGAAGTCTGTCAAAGTGCCT 60.541 52.381 0.00 0.00 0.00 4.75
131 132 2.576615 GGAAGTCTGTCAAAGTGCCTT 58.423 47.619 0.00 0.00 0.00 4.35
132 133 2.291741 GGAAGTCTGTCAAAGTGCCTTG 59.708 50.000 0.00 0.00 0.00 3.61
133 134 3.206150 GAAGTCTGTCAAAGTGCCTTGA 58.794 45.455 0.00 0.00 32.89 3.02
141 142 2.875933 TCAAAGTGCCTTGACTTAACGG 59.124 45.455 0.00 0.00 35.01 4.44
142 143 2.616842 CAAAGTGCCTTGACTTAACGGT 59.383 45.455 0.00 0.00 35.01 4.83
143 144 2.165319 AGTGCCTTGACTTAACGGTC 57.835 50.000 0.00 0.00 36.81 4.79
144 145 0.788391 GTGCCTTGACTTAACGGTCG 59.212 55.000 0.00 0.00 38.91 4.79
145 146 0.947180 TGCCTTGACTTAACGGTCGC 60.947 55.000 0.00 0.00 38.91 5.19
146 147 1.952266 GCCTTGACTTAACGGTCGCG 61.952 60.000 0.00 0.00 38.91 5.87
147 148 1.414897 CTTGACTTAACGGTCGCGC 59.585 57.895 0.00 0.00 38.91 6.86
148 149 1.952266 CTTGACTTAACGGTCGCGCC 61.952 60.000 0.00 5.19 38.91 6.53
149 150 2.431260 GACTTAACGGTCGCGCCA 60.431 61.111 17.57 0.00 36.97 5.69
150 151 1.808390 GACTTAACGGTCGCGCCAT 60.808 57.895 17.57 9.40 36.97 4.40
151 152 0.526096 GACTTAACGGTCGCGCCATA 60.526 55.000 17.57 8.58 36.97 2.74
152 153 0.803380 ACTTAACGGTCGCGCCATAC 60.803 55.000 17.57 3.89 36.97 2.39
153 154 0.802994 CTTAACGGTCGCGCCATACA 60.803 55.000 17.57 0.00 36.97 2.29
154 155 0.179105 TTAACGGTCGCGCCATACAT 60.179 50.000 17.57 3.58 36.97 2.29
155 156 0.872451 TAACGGTCGCGCCATACATG 60.872 55.000 17.57 0.00 36.97 3.21
170 171 6.757897 CCATACATGGCAAAGTTAGAAGAA 57.242 37.500 0.00 0.00 41.75 2.52
171 172 7.156876 CCATACATGGCAAAGTTAGAAGAAA 57.843 36.000 0.00 0.00 41.75 2.52
172 173 7.029563 CCATACATGGCAAAGTTAGAAGAAAC 58.970 38.462 0.00 0.00 41.75 2.78
173 174 7.309133 CCATACATGGCAAAGTTAGAAGAAACA 60.309 37.037 0.00 0.00 41.75 2.83
174 175 5.831997 ACATGGCAAAGTTAGAAGAAACAC 58.168 37.500 0.00 0.00 0.00 3.32
175 176 5.359576 ACATGGCAAAGTTAGAAGAAACACA 59.640 36.000 0.00 0.00 0.00 3.72
176 177 5.906113 TGGCAAAGTTAGAAGAAACACAA 57.094 34.783 0.00 0.00 0.00 3.33
177 178 6.274157 TGGCAAAGTTAGAAGAAACACAAA 57.726 33.333 0.00 0.00 0.00 2.83
178 179 6.096695 TGGCAAAGTTAGAAGAAACACAAAC 58.903 36.000 0.00 0.00 0.00 2.93
179 180 5.518847 GGCAAAGTTAGAAGAAACACAAACC 59.481 40.000 0.00 0.00 0.00 3.27
180 181 6.096695 GCAAAGTTAGAAGAAACACAAACCA 58.903 36.000 0.00 0.00 0.00 3.67
181 182 6.034577 GCAAAGTTAGAAGAAACACAAACCAC 59.965 38.462 0.00 0.00 0.00 4.16
182 183 5.479716 AGTTAGAAGAAACACAAACCACG 57.520 39.130 0.00 0.00 0.00 4.94
183 184 4.334481 AGTTAGAAGAAACACAAACCACGG 59.666 41.667 0.00 0.00 0.00 4.94
184 185 2.021457 AGAAGAAACACAAACCACGGG 58.979 47.619 0.00 0.00 0.00 5.28
185 186 0.458260 AAGAAACACAAACCACGGGC 59.542 50.000 0.00 0.00 0.00 6.13
186 187 1.298788 GAAACACAAACCACGGGCG 60.299 57.895 0.00 0.00 0.00 6.13
187 188 1.716826 GAAACACAAACCACGGGCGA 61.717 55.000 0.00 0.00 0.00 5.54
188 189 1.995646 AAACACAAACCACGGGCGAC 61.996 55.000 0.00 0.00 0.00 5.19
189 190 2.897846 CACAAACCACGGGCGACA 60.898 61.111 0.00 0.00 0.00 4.35
190 191 2.112297 ACAAACCACGGGCGACAT 59.888 55.556 0.00 0.00 0.00 3.06
191 192 1.527380 ACAAACCACGGGCGACATT 60.527 52.632 0.00 0.00 0.00 2.71
192 193 1.104577 ACAAACCACGGGCGACATTT 61.105 50.000 0.00 0.00 0.00 2.32
193 194 0.386731 CAAACCACGGGCGACATTTC 60.387 55.000 0.00 0.00 0.00 2.17
194 195 1.520600 AAACCACGGGCGACATTTCC 61.521 55.000 0.00 0.00 0.00 3.13
195 196 2.359354 CCACGGGCGACATTTCCA 60.359 61.111 0.00 0.00 0.00 3.53
196 197 1.748879 CCACGGGCGACATTTCCAT 60.749 57.895 0.00 0.00 0.00 3.41
197 198 0.462937 CCACGGGCGACATTTCCATA 60.463 55.000 0.00 0.00 0.00 2.74
198 199 1.374560 CACGGGCGACATTTCCATAA 58.625 50.000 0.00 0.00 0.00 1.90
199 200 1.740585 CACGGGCGACATTTCCATAAA 59.259 47.619 0.00 0.00 0.00 1.40
200 201 2.357637 CACGGGCGACATTTCCATAAAT 59.642 45.455 0.00 0.00 35.65 1.40
201 202 3.562141 CACGGGCGACATTTCCATAAATA 59.438 43.478 0.00 0.00 33.45 1.40
202 203 3.813166 ACGGGCGACATTTCCATAAATAG 59.187 43.478 0.00 0.00 33.45 1.73
203 204 3.364964 CGGGCGACATTTCCATAAATAGC 60.365 47.826 0.00 0.00 33.45 2.97
204 205 3.568007 GGGCGACATTTCCATAAATAGCA 59.432 43.478 0.00 0.00 33.45 3.49
205 206 4.537015 GGCGACATTTCCATAAATAGCAC 58.463 43.478 0.00 0.00 33.45 4.40
206 207 4.275936 GGCGACATTTCCATAAATAGCACT 59.724 41.667 0.00 0.00 33.45 4.40
207 208 5.468746 GGCGACATTTCCATAAATAGCACTA 59.531 40.000 0.00 0.00 33.45 2.74
208 209 6.017440 GGCGACATTTCCATAAATAGCACTAA 60.017 38.462 0.00 0.00 33.45 2.24
209 210 7.414436 GCGACATTTCCATAAATAGCACTAAA 58.586 34.615 0.00 0.00 33.45 1.85
210 211 7.587757 GCGACATTTCCATAAATAGCACTAAAG 59.412 37.037 0.00 0.00 33.45 1.85
211 212 7.587757 CGACATTTCCATAAATAGCACTAAAGC 59.412 37.037 0.00 0.00 33.45 3.51
212 213 8.292444 ACATTTCCATAAATAGCACTAAAGCA 57.708 30.769 0.00 0.00 33.45 3.91
213 214 8.748412 ACATTTCCATAAATAGCACTAAAGCAA 58.252 29.630 0.00 0.00 33.45 3.91
214 215 9.754382 CATTTCCATAAATAGCACTAAAGCAAT 57.246 29.630 0.00 0.00 33.45 3.56
215 216 9.754382 ATTTCCATAAATAGCACTAAAGCAATG 57.246 29.630 0.00 0.00 33.45 2.82
216 217 7.880160 TCCATAAATAGCACTAAAGCAATGT 57.120 32.000 0.00 0.00 36.85 2.71
217 218 7.930217 TCCATAAATAGCACTAAAGCAATGTC 58.070 34.615 0.00 0.00 36.85 3.06
218 219 7.555914 TCCATAAATAGCACTAAAGCAATGTCA 59.444 33.333 0.00 0.00 36.85 3.58
219 220 8.355169 CCATAAATAGCACTAAAGCAATGTCAT 58.645 33.333 0.00 0.00 36.85 3.06
220 221 9.740239 CATAAATAGCACTAAAGCAATGTCATT 57.260 29.630 0.00 0.00 36.85 2.57
221 222 9.740239 ATAAATAGCACTAAAGCAATGTCATTG 57.260 29.630 19.42 19.42 43.06 2.82
222 223 7.395190 AATAGCACTAAAGCAATGTCATTGA 57.605 32.000 26.36 7.06 42.83 2.57
223 224 5.306532 AGCACTAAAGCAATGTCATTGAG 57.693 39.130 26.36 17.17 42.83 3.02
224 225 3.855950 GCACTAAAGCAATGTCATTGAGC 59.144 43.478 26.36 13.64 42.83 4.26
225 226 4.616604 GCACTAAAGCAATGTCATTGAGCA 60.617 41.667 26.36 8.95 42.83 4.26
226 227 5.463286 CACTAAAGCAATGTCATTGAGCAA 58.537 37.500 26.36 9.56 42.83 3.91
227 228 5.571741 CACTAAAGCAATGTCATTGAGCAAG 59.428 40.000 26.36 18.52 42.83 4.01
228 229 4.595762 AAAGCAATGTCATTGAGCAAGT 57.404 36.364 26.36 4.68 42.83 3.16
229 230 4.595762 AAGCAATGTCATTGAGCAAGTT 57.404 36.364 26.36 8.30 42.83 2.66
230 231 4.595762 AGCAATGTCATTGAGCAAGTTT 57.404 36.364 26.36 0.00 42.83 2.66
231 232 5.710513 AGCAATGTCATTGAGCAAGTTTA 57.289 34.783 26.36 0.00 42.83 2.01
232 233 5.706916 AGCAATGTCATTGAGCAAGTTTAG 58.293 37.500 26.36 0.00 42.83 1.85
233 234 4.325472 GCAATGTCATTGAGCAAGTTTAGC 59.675 41.667 26.36 5.23 42.83 3.09
234 235 5.706916 CAATGTCATTGAGCAAGTTTAGCT 58.293 37.500 19.06 0.00 46.82 3.32
235 236 4.754372 TGTCATTGAGCAAGTTTAGCTG 57.246 40.909 0.00 0.00 43.58 4.24
236 237 4.136796 TGTCATTGAGCAAGTTTAGCTGT 58.863 39.130 0.00 0.00 43.58 4.40
237 238 4.023792 TGTCATTGAGCAAGTTTAGCTGTG 60.024 41.667 0.00 0.00 43.58 3.66
238 239 4.214119 GTCATTGAGCAAGTTTAGCTGTGA 59.786 41.667 0.00 0.00 43.58 3.58
239 240 4.214119 TCATTGAGCAAGTTTAGCTGTGAC 59.786 41.667 0.00 0.00 43.58 3.67
252 253 0.798776 CTGTGACGAGGGAATTGCAC 59.201 55.000 0.00 0.00 0.00 4.57
255 256 1.606668 GTGACGAGGGAATTGCACAAA 59.393 47.619 0.00 0.00 0.00 2.83
263 264 1.540146 GGAATTGCACAAACCACCACC 60.540 52.381 0.00 0.00 0.00 4.61
285 286 0.106469 TTGGGGCTAGTGTTGCACAA 60.106 50.000 2.01 0.00 36.74 3.33
311 312 3.434299 ACCTACTTTACGGATTTGTTGCG 59.566 43.478 0.00 0.00 45.80 4.85
320 321 2.542824 CGGATTTGTTGCGGAAAACACT 60.543 45.455 0.00 0.00 39.70 3.55
349 350 6.751514 TTGGTGTAATACATTGCAACTAGG 57.248 37.500 0.00 0.00 40.20 3.02
356 357 9.899661 TGTAATACATTGCAACTAGGTCTAATT 57.100 29.630 0.00 0.00 29.44 1.40
390 391 9.029368 TGGATACATTGACATAATTCCAAACAA 57.971 29.630 0.00 0.00 46.17 2.83
400 401 1.333177 TTCCAAACAAATGGGTCCCG 58.667 50.000 2.65 0.00 41.05 5.14
432 434 1.067213 ACATGTGGCAATAAAACCGGC 60.067 47.619 0.00 0.00 0.00 6.13
450 453 2.223548 CGGCCACATCACCAACATATTG 60.224 50.000 2.24 0.00 35.40 1.90
466 503 8.456904 CAACATATTGGACTGTCATTTTTCTG 57.543 34.615 10.38 1.08 31.63 3.02
544 606 8.926715 AAATCGAATGGGCTAAATAAAACTTC 57.073 30.769 0.00 0.00 0.00 3.01
546 608 5.065474 TCGAATGGGCTAAATAAAACTTCCG 59.935 40.000 0.00 0.00 0.00 4.30
553 615 8.266473 TGGGCTAAATAAAACTTCCGTTATCTA 58.734 33.333 0.00 0.00 31.86 1.98
554 616 8.771766 GGGCTAAATAAAACTTCCGTTATCTAG 58.228 37.037 0.00 0.00 31.86 2.43
588 650 4.821940 TCCAAATGGGGTAAAACTTTCCT 58.178 39.130 0.00 0.00 37.22 3.36
594 656 9.250246 CAAATGGGGTAAAACTTTCCTAGAATA 57.750 33.333 0.00 0.00 0.00 1.75
624 686 9.912634 CTGTACACATTTGAAATTTACTGGAAT 57.087 29.630 0.00 0.00 0.00 3.01
691 753 1.268999 TGAAACAAGTTCGGCATGTGC 60.269 47.619 0.00 0.00 39.30 4.57
692 754 1.001378 GAAACAAGTTCGGCATGTGCT 60.001 47.619 4.84 0.00 41.70 4.40
693 755 1.032014 AACAAGTTCGGCATGTGCTT 58.968 45.000 4.84 0.00 41.70 3.91
694 756 0.593128 ACAAGTTCGGCATGTGCTTC 59.407 50.000 4.84 0.00 41.70 3.86
695 757 0.877071 CAAGTTCGGCATGTGCTTCT 59.123 50.000 4.84 0.00 41.70 2.85
699 761 2.030805 AGTTCGGCATGTGCTTCTTTTC 60.031 45.455 4.84 0.00 41.70 2.29
705 767 2.847901 CATGTGCTTCTTTTCGCTCAG 58.152 47.619 0.00 0.00 33.80 3.35
718 780 1.686587 TCGCTCAGAACCTTCAACAGA 59.313 47.619 0.00 0.00 0.00 3.41
722 784 3.817647 GCTCAGAACCTTCAACAGATTGT 59.182 43.478 0.00 0.00 37.11 2.71
990 1057 0.387929 AGTCTTGTTCGTTCGCAGGA 59.612 50.000 0.00 0.00 0.00 3.86
1003 1070 0.250209 CGCAGGAGGAATCAGGATGG 60.250 60.000 0.00 0.00 36.16 3.51
1111 1178 1.606889 GTCCTGTCCTGGGAGTCGT 60.607 63.158 0.00 0.00 33.04 4.34
1389 1456 2.185350 CTGCCGTGCTTCGAGGAT 59.815 61.111 0.00 0.00 42.86 3.24
1414 1481 2.601666 TGCTCGACTGCCCTGACT 60.602 61.111 0.00 0.00 0.00 3.41
1533 1600 2.831685 TGTACATGAGCAAGTTCGGT 57.168 45.000 0.00 0.00 0.00 4.69
1554 1621 0.457443 GCTTTCTGCATGGCCCTTAC 59.543 55.000 0.00 0.00 42.31 2.34
1590 1657 4.057428 GTCCACGCGGCTGTCTCT 62.057 66.667 12.47 0.00 0.00 3.10
1619 1686 1.165270 GGTGGCAGTGTTACCATCAC 58.835 55.000 11.58 0.00 37.02 3.06
1699 1766 2.039480 ACTCACACAAGCTGGATGATGT 59.961 45.455 0.00 0.00 0.00 3.06
1767 1834 2.879026 GAGGAGCTCGAAAAACAAACCT 59.121 45.455 7.83 0.00 0.00 3.50
1797 1864 0.602638 TGCGTGTTGATCCACCAGAC 60.603 55.000 0.00 0.00 31.47 3.51
1858 1925 0.574454 GATCGCGACATGTTCAGCTC 59.426 55.000 12.93 0.00 0.00 4.09
1861 1934 1.423056 GCGACATGTTCAGCTCTGC 59.577 57.895 0.00 0.00 0.00 4.26
1884 1957 0.473886 AGCCTTACCTGGTGGAGTGT 60.474 55.000 10.23 0.00 37.04 3.55
1885 1958 0.321653 GCCTTACCTGGTGGAGTGTG 60.322 60.000 10.23 0.00 37.04 3.82
1939 2012 1.411246 GAAAGTCCCGGCTTTTGGTTT 59.589 47.619 8.27 0.00 38.64 3.27
2058 2152 0.396811 CCAGGAACTCCGTCACCTTT 59.603 55.000 0.00 0.00 42.08 3.11
2087 2181 1.255882 CCTAACAATGGCCAACTGCA 58.744 50.000 10.96 1.19 43.89 4.41
2106 2200 2.160205 CAGCAATATGATCTGGGCAGG 58.840 52.381 0.00 0.00 0.00 4.85
2149 2243 1.600916 GGAAACTTCCGCAGTGCCT 60.601 57.895 10.11 0.00 37.65 4.75
2267 2361 2.358957 TCATTCTGATCCTTGTTGCCG 58.641 47.619 0.00 0.00 0.00 5.69
2268 2362 2.027285 TCATTCTGATCCTTGTTGCCGA 60.027 45.455 0.00 0.00 0.00 5.54
2376 2500 3.250040 ACAGCTTTATGTGGTTCGAACAC 59.750 43.478 28.24 22.46 39.26 3.32
2382 2506 2.613026 TGTGGTTCGAACACATGTCT 57.387 45.000 28.24 0.00 43.35 3.41
2402 2530 8.820933 CATGTCTACAGATGGTTAAGTATTGTG 58.179 37.037 0.00 0.00 0.00 3.33
2481 2610 5.009610 CAGGTAGTATTTGGCTGTGTGTTTT 59.990 40.000 0.00 0.00 0.00 2.43
2482 2611 5.009610 AGGTAGTATTTGGCTGTGTGTTTTG 59.990 40.000 0.00 0.00 0.00 2.44
2484 2613 1.952193 ATTTGGCTGTGTGTTTTGCC 58.048 45.000 0.00 0.00 45.10 4.52
2485 2614 0.901124 TTTGGCTGTGTGTTTTGCCT 59.099 45.000 0.00 0.00 45.11 4.75
2486 2615 0.459489 TTGGCTGTGTGTTTTGCCTC 59.541 50.000 0.00 0.00 45.11 4.70
2487 2616 0.395586 TGGCTGTGTGTTTTGCCTCT 60.396 50.000 0.00 0.00 45.11 3.69
2488 2617 1.133945 TGGCTGTGTGTTTTGCCTCTA 60.134 47.619 0.00 0.00 45.11 2.43
2489 2618 1.266989 GGCTGTGTGTTTTGCCTCTAC 59.733 52.381 0.00 0.00 41.92 2.59
2490 2619 1.946768 GCTGTGTGTTTTGCCTCTACA 59.053 47.619 0.00 0.00 0.00 2.74
2491 2620 2.287009 GCTGTGTGTTTTGCCTCTACAC 60.287 50.000 0.00 0.00 41.85 2.90
2492 2621 3.206150 CTGTGTGTTTTGCCTCTACACT 58.794 45.455 0.00 0.00 41.98 3.55
2493 2622 3.202906 TGTGTGTTTTGCCTCTACACTC 58.797 45.455 0.00 0.00 41.98 3.51
2494 2623 3.118408 TGTGTGTTTTGCCTCTACACTCT 60.118 43.478 0.00 0.00 41.98 3.24
2495 2624 3.495001 GTGTGTTTTGCCTCTACACTCTC 59.505 47.826 0.00 0.00 41.98 3.20
2496 2625 3.388024 TGTGTTTTGCCTCTACACTCTCT 59.612 43.478 0.00 0.00 41.98 3.10
2497 2626 3.743396 GTGTTTTGCCTCTACACTCTCTG 59.257 47.826 0.00 0.00 39.18 3.35
2498 2627 3.388024 TGTTTTGCCTCTACACTCTCTGT 59.612 43.478 0.00 0.00 36.82 3.41
2501 2630 2.717390 TGCCTCTACACTCTCTGTCTC 58.283 52.381 0.00 0.00 33.91 3.36
2527 2670 8.275015 TGTCTACTTTTGTTCAGACATTTGAA 57.725 30.769 0.00 0.00 40.86 2.69
2589 2741 1.180029 ATCATGCTGGGAAACACTGC 58.820 50.000 0.00 0.00 0.00 4.40
2590 2742 1.210931 CATGCTGGGAAACACTGCG 59.789 57.895 0.00 0.00 35.82 5.18
2621 2773 1.202989 TGCTGGGTTGTGCCTTTATCA 60.203 47.619 0.00 0.00 37.43 2.15
2682 2839 9.686683 ATGGTACTTGCTGAATATTAACTCTTT 57.313 29.630 0.00 0.00 0.00 2.52
2706 2863 2.160219 TCTTGATGACGCTGAATTGCAC 59.840 45.455 0.00 0.00 0.00 4.57
2707 2864 0.443478 TGATGACGCTGAATTGCACG 59.557 50.000 0.00 0.00 0.00 5.34
2715 2872 2.664916 GCTGAATTGCACGTTTGTCAT 58.335 42.857 0.00 0.00 0.00 3.06
2770 2927 8.936864 GTTGTGTTTACTGCTATGATAAACTCT 58.063 33.333 7.41 0.00 38.85 3.24
2788 2945 3.258622 ACTCTGGTCCAACTTACTGCTAC 59.741 47.826 0.00 0.00 0.00 3.58
2807 2964 7.120285 ACTGCTACGATAAACTCTAACAGTACA 59.880 37.037 0.00 0.00 32.30 2.90
2812 2969 8.290663 ACGATAAACTCTAACAGTACACAAAC 57.709 34.615 0.00 0.00 32.30 2.93
2838 2995 6.865726 CCTGATAGATACATCCGACTGAAAAG 59.134 42.308 0.00 0.00 0.00 2.27
2839 2996 7.255625 CCTGATAGATACATCCGACTGAAAAGA 60.256 40.741 0.00 0.00 0.00 2.52
2840 2997 7.652727 TGATAGATACATCCGACTGAAAAGAG 58.347 38.462 0.00 0.00 0.00 2.85
2841 2998 7.502561 TGATAGATACATCCGACTGAAAAGAGA 59.497 37.037 0.00 0.00 0.00 3.10
2842 2999 6.142818 AGATACATCCGACTGAAAAGAGAG 57.857 41.667 0.00 0.00 0.00 3.20
2843 3000 5.888724 AGATACATCCGACTGAAAAGAGAGA 59.111 40.000 0.00 0.00 0.00 3.10
2846 3003 5.799213 ACATCCGACTGAAAAGAGAGAAAT 58.201 37.500 0.00 0.00 0.00 2.17
2848 3005 7.560368 ACATCCGACTGAAAAGAGAGAAATAT 58.440 34.615 0.00 0.00 0.00 1.28
2849 3006 7.708752 ACATCCGACTGAAAAGAGAGAAATATC 59.291 37.037 0.00 0.00 0.00 1.63
2850 3007 7.411486 TCCGACTGAAAAGAGAGAAATATCT 57.589 36.000 0.00 0.00 39.10 1.98
2851 3008 7.261325 TCCGACTGAAAAGAGAGAAATATCTG 58.739 38.462 0.00 0.00 35.54 2.90
2852 3009 7.122799 TCCGACTGAAAAGAGAGAAATATCTGA 59.877 37.037 0.00 0.00 35.54 3.27
2853 3010 7.221838 CCGACTGAAAAGAGAGAAATATCTGAC 59.778 40.741 0.00 0.00 35.54 3.51
2854 3011 7.757173 CGACTGAAAAGAGAGAAATATCTGACA 59.243 37.037 0.00 0.00 35.54 3.58
2855 3012 8.770438 ACTGAAAAGAGAGAAATATCTGACAC 57.230 34.615 0.00 0.00 35.54 3.67
2856 3013 7.543868 ACTGAAAAGAGAGAAATATCTGACACG 59.456 37.037 0.00 0.00 35.54 4.49
2857 3014 7.378966 TGAAAAGAGAGAAATATCTGACACGT 58.621 34.615 0.00 0.00 35.54 4.49
2858 3015 7.872993 TGAAAAGAGAGAAATATCTGACACGTT 59.127 33.333 0.00 0.00 35.54 3.99
2859 3016 9.355215 GAAAAGAGAGAAATATCTGACACGTTA 57.645 33.333 0.00 0.00 35.54 3.18
2860 3017 9.706691 AAAAGAGAGAAATATCTGACACGTTAA 57.293 29.630 0.00 0.00 35.54 2.01
2861 3018 8.690680 AAGAGAGAAATATCTGACACGTTAAC 57.309 34.615 0.00 0.00 35.54 2.01
2862 3019 7.827701 AGAGAGAAATATCTGACACGTTAACA 58.172 34.615 6.39 0.00 35.54 2.41
2863 3020 7.971168 AGAGAGAAATATCTGACACGTTAACAG 59.029 37.037 6.39 6.96 35.54 3.16
2864 3021 7.036220 AGAGAAATATCTGACACGTTAACAGG 58.964 38.462 6.39 0.00 35.54 4.00
2865 3022 5.581085 AGAAATATCTGACACGTTAACAGGC 59.419 40.000 6.39 0.00 33.59 4.85
2866 3023 2.831685 ATCTGACACGTTAACAGGCA 57.168 45.000 6.39 4.95 33.19 4.75
2867 3024 2.605837 TCTGACACGTTAACAGGCAA 57.394 45.000 6.39 0.00 33.19 4.52
2868 3025 2.907634 TCTGACACGTTAACAGGCAAA 58.092 42.857 6.39 0.00 33.19 3.68
2869 3026 3.472652 TCTGACACGTTAACAGGCAAAT 58.527 40.909 6.39 0.00 33.19 2.32
2870 3027 3.496884 TCTGACACGTTAACAGGCAAATC 59.503 43.478 6.39 0.00 33.19 2.17
2871 3028 3.472652 TGACACGTTAACAGGCAAATCT 58.527 40.909 6.39 0.00 0.00 2.40
2872 3029 4.633175 TGACACGTTAACAGGCAAATCTA 58.367 39.130 6.39 0.00 0.00 1.98
2873 3030 5.242434 TGACACGTTAACAGGCAAATCTAT 58.758 37.500 6.39 0.00 0.00 1.98
2897 3054 6.166984 TCTAGATAATGCTCCAAGGTGAAG 57.833 41.667 0.00 0.00 0.00 3.02
2898 3055 4.851639 AGATAATGCTCCAAGGTGAAGT 57.148 40.909 0.00 0.00 0.00 3.01
2923 3080 3.772025 AGTTCGGATCATCCTTGTCTTCT 59.228 43.478 1.10 0.00 33.30 2.85
2963 3122 7.388500 CCTTGCAACAATAAATTGATTTCAGGT 59.612 33.333 9.60 0.00 40.14 4.00
3080 3256 5.748630 GCACTTTTGAAAATCTTCGGTTTCT 59.251 36.000 0.00 0.00 35.26 2.52
3081 3257 6.255670 GCACTTTTGAAAATCTTCGGTTTCTT 59.744 34.615 0.00 0.00 35.26 2.52
3082 3258 7.612266 CACTTTTGAAAATCTTCGGTTTCTTG 58.388 34.615 0.00 0.00 35.26 3.02
3083 3259 7.487829 CACTTTTGAAAATCTTCGGTTTCTTGA 59.512 33.333 0.00 0.00 35.26 3.02
3084 3260 7.702348 ACTTTTGAAAATCTTCGGTTTCTTGAG 59.298 33.333 0.00 0.00 35.26 3.02
3085 3261 6.935741 TTGAAAATCTTCGGTTTCTTGAGA 57.064 33.333 0.00 0.00 35.26 3.27
3086 3262 7.510549 TTGAAAATCTTCGGTTTCTTGAGAT 57.489 32.000 0.00 0.00 35.26 2.75
3087 3263 8.615878 TTGAAAATCTTCGGTTTCTTGAGATA 57.384 30.769 0.00 0.00 35.26 1.98
3088 3264 8.256611 TGAAAATCTTCGGTTTCTTGAGATAG 57.743 34.615 0.00 0.00 35.26 2.08
3089 3265 7.334421 TGAAAATCTTCGGTTTCTTGAGATAGG 59.666 37.037 0.00 0.00 35.26 2.57
3090 3266 5.941555 ATCTTCGGTTTCTTGAGATAGGT 57.058 39.130 0.00 0.00 0.00 3.08
3091 3267 5.073311 TCTTCGGTTTCTTGAGATAGGTG 57.927 43.478 0.00 0.00 0.00 4.00
3092 3268 4.770531 TCTTCGGTTTCTTGAGATAGGTGA 59.229 41.667 0.00 0.00 0.00 4.02
3093 3269 5.422331 TCTTCGGTTTCTTGAGATAGGTGAT 59.578 40.000 0.00 0.00 0.00 3.06
3094 3270 5.677319 TCGGTTTCTTGAGATAGGTGATT 57.323 39.130 0.00 0.00 0.00 2.57
3095 3271 5.419542 TCGGTTTCTTGAGATAGGTGATTG 58.580 41.667 0.00 0.00 0.00 2.67
3096 3272 4.034510 CGGTTTCTTGAGATAGGTGATTGC 59.965 45.833 0.00 0.00 0.00 3.56
3097 3273 4.336713 GGTTTCTTGAGATAGGTGATTGCC 59.663 45.833 0.00 0.00 0.00 4.52
3098 3274 3.845781 TCTTGAGATAGGTGATTGCCC 57.154 47.619 0.00 0.00 0.00 5.36
3099 3275 3.114606 TCTTGAGATAGGTGATTGCCCA 58.885 45.455 0.00 0.00 0.00 5.36
3100 3276 3.718434 TCTTGAGATAGGTGATTGCCCAT 59.282 43.478 0.00 0.00 0.00 4.00
3101 3277 4.166725 TCTTGAGATAGGTGATTGCCCATT 59.833 41.667 0.00 0.00 0.00 3.16
3102 3278 5.369404 TCTTGAGATAGGTGATTGCCCATTA 59.631 40.000 0.00 0.00 0.00 1.90
3103 3279 5.848286 TGAGATAGGTGATTGCCCATTAT 57.152 39.130 0.00 0.00 0.00 1.28
3104 3280 6.204852 TGAGATAGGTGATTGCCCATTATT 57.795 37.500 0.00 0.00 0.00 1.40
3105 3281 6.613699 TGAGATAGGTGATTGCCCATTATTT 58.386 36.000 0.00 0.00 0.00 1.40
3106 3282 6.491062 TGAGATAGGTGATTGCCCATTATTTG 59.509 38.462 0.00 0.00 0.00 2.32
3107 3283 5.776716 AGATAGGTGATTGCCCATTATTTGG 59.223 40.000 0.00 0.00 46.00 3.28
3129 3305 9.540538 TTTGGAAAAATACCTTTCTGGATATCA 57.459 29.630 4.83 0.00 39.71 2.15
3130 3306 9.540538 TTGGAAAAATACCTTTCTGGATATCAA 57.459 29.630 4.83 0.00 39.71 2.57
3131 3307 9.540538 TGGAAAAATACCTTTCTGGATATCAAA 57.459 29.630 4.83 0.00 39.71 2.69
3133 3309 9.521503 GAAAAATACCTTTCTGGATATCAAAGC 57.478 33.333 4.83 0.00 39.71 3.51
3134 3310 8.829373 AAAATACCTTTCTGGATATCAAAGCT 57.171 30.769 4.83 0.00 39.71 3.74
3135 3311 9.920946 AAAATACCTTTCTGGATATCAAAGCTA 57.079 29.630 4.83 0.00 39.71 3.32
3136 3312 9.566432 AAATACCTTTCTGGATATCAAAGCTAG 57.434 33.333 4.83 2.92 39.71 3.42
3137 3313 5.372373 ACCTTTCTGGATATCAAAGCTAGC 58.628 41.667 6.62 6.62 39.71 3.42
3138 3314 5.104360 ACCTTTCTGGATATCAAAGCTAGCA 60.104 40.000 18.83 0.00 39.71 3.49
3139 3315 5.824624 CCTTTCTGGATATCAAAGCTAGCAA 59.175 40.000 18.83 0.00 38.35 3.91
3140 3316 6.319658 CCTTTCTGGATATCAAAGCTAGCAAA 59.680 38.462 18.83 2.80 38.35 3.68
3141 3317 7.014038 CCTTTCTGGATATCAAAGCTAGCAAAT 59.986 37.037 18.83 6.92 38.35 2.32
3142 3318 7.886629 TTCTGGATATCAAAGCTAGCAAATT 57.113 32.000 18.83 6.04 0.00 1.82
3143 3319 7.886629 TCTGGATATCAAAGCTAGCAAATTT 57.113 32.000 18.83 6.03 0.00 1.82
3144 3320 8.978874 TCTGGATATCAAAGCTAGCAAATTTA 57.021 30.769 18.83 3.39 0.00 1.40
3145 3321 9.407380 TCTGGATATCAAAGCTAGCAAATTTAA 57.593 29.630 18.83 0.00 0.00 1.52
3176 3352 9.319143 ACTAATATTGTCTAACAATCAGCTCAC 57.681 33.333 8.49 0.00 44.91 3.51
3177 3353 9.539825 CTAATATTGTCTAACAATCAGCTCACT 57.460 33.333 8.49 0.00 44.91 3.41
3178 3354 7.783090 ATATTGTCTAACAATCAGCTCACTG 57.217 36.000 8.49 0.00 44.91 3.66
3179 3355 3.930336 TGTCTAACAATCAGCTCACTGG 58.070 45.455 0.00 0.00 44.59 4.00
3180 3356 3.578282 TGTCTAACAATCAGCTCACTGGA 59.422 43.478 0.00 0.00 44.59 3.86
3181 3357 4.223700 TGTCTAACAATCAGCTCACTGGAT 59.776 41.667 0.00 0.00 44.59 3.41
3182 3358 4.808364 GTCTAACAATCAGCTCACTGGATC 59.192 45.833 0.00 0.00 44.59 3.36
3183 3359 3.708403 AACAATCAGCTCACTGGATCA 57.292 42.857 0.00 0.00 44.59 2.92
3184 3360 3.708403 ACAATCAGCTCACTGGATCAA 57.292 42.857 0.00 0.00 44.59 2.57
3185 3361 4.232188 ACAATCAGCTCACTGGATCAAT 57.768 40.909 0.00 0.00 44.59 2.57
3186 3362 5.363562 ACAATCAGCTCACTGGATCAATA 57.636 39.130 0.00 0.00 44.59 1.90
3187 3363 5.121811 ACAATCAGCTCACTGGATCAATAC 58.878 41.667 0.00 0.00 44.59 1.89
3188 3364 5.104610 ACAATCAGCTCACTGGATCAATACT 60.105 40.000 0.00 0.00 44.59 2.12
3189 3365 6.098838 ACAATCAGCTCACTGGATCAATACTA 59.901 38.462 0.00 0.00 44.59 1.82
3190 3366 5.781210 TCAGCTCACTGGATCAATACTAG 57.219 43.478 0.00 0.00 44.59 2.57
3191 3367 4.038522 TCAGCTCACTGGATCAATACTAGC 59.961 45.833 0.00 0.00 44.59 3.42
3192 3368 3.323403 AGCTCACTGGATCAATACTAGCC 59.677 47.826 0.00 0.00 0.00 3.93
3193 3369 3.323403 GCTCACTGGATCAATACTAGCCT 59.677 47.826 0.00 0.00 0.00 4.58
3194 3370 4.798924 GCTCACTGGATCAATACTAGCCTG 60.799 50.000 0.00 0.00 0.00 4.85
3195 3371 3.643320 TCACTGGATCAATACTAGCCTGG 59.357 47.826 0.00 0.00 0.00 4.45
3196 3372 3.643320 CACTGGATCAATACTAGCCTGGA 59.357 47.826 0.00 0.00 0.00 3.86
3197 3373 4.285517 CACTGGATCAATACTAGCCTGGAT 59.714 45.833 0.00 0.00 0.00 3.41
3198 3374 4.530161 ACTGGATCAATACTAGCCTGGATC 59.470 45.833 0.00 0.00 0.00 3.36
3199 3375 4.492646 TGGATCAATACTAGCCTGGATCA 58.507 43.478 0.00 2.47 34.34 2.92
3200 3376 4.907269 TGGATCAATACTAGCCTGGATCAA 59.093 41.667 0.00 3.76 34.34 2.57
3201 3377 5.369404 TGGATCAATACTAGCCTGGATCAAA 59.631 40.000 0.00 3.19 34.34 2.69
3202 3378 5.936956 GGATCAATACTAGCCTGGATCAAAG 59.063 44.000 0.00 0.00 34.34 2.77
3203 3379 4.708177 TCAATACTAGCCTGGATCAAAGC 58.292 43.478 0.00 0.00 0.00 3.51
3204 3380 4.410228 TCAATACTAGCCTGGATCAAAGCT 59.590 41.667 0.00 0.00 39.37 3.74
3205 3381 2.998316 ACTAGCCTGGATCAAAGCTC 57.002 50.000 0.00 0.00 36.79 4.09
3206 3382 2.476199 ACTAGCCTGGATCAAAGCTCT 58.524 47.619 0.00 0.00 36.79 4.09
3207 3383 3.647636 ACTAGCCTGGATCAAAGCTCTA 58.352 45.455 0.00 0.00 36.79 2.43
3208 3384 4.033709 ACTAGCCTGGATCAAAGCTCTAA 58.966 43.478 0.00 0.00 36.79 2.10
3209 3385 3.557228 AGCCTGGATCAAAGCTCTAAG 57.443 47.619 0.00 0.00 0.00 2.18
3210 3386 1.946081 GCCTGGATCAAAGCTCTAAGC 59.054 52.381 0.00 0.00 42.84 3.09
3222 3398 3.719173 GCTCTAAGCTACGTCTTCCAT 57.281 47.619 0.00 0.00 38.45 3.41
3223 3399 3.634283 GCTCTAAGCTACGTCTTCCATC 58.366 50.000 0.00 0.00 38.45 3.51
3224 3400 3.316868 GCTCTAAGCTACGTCTTCCATCT 59.683 47.826 0.00 0.00 38.45 2.90
3225 3401 4.202070 GCTCTAAGCTACGTCTTCCATCTT 60.202 45.833 0.00 0.00 38.45 2.40
3226 3402 5.008811 GCTCTAAGCTACGTCTTCCATCTTA 59.991 44.000 0.00 0.00 38.45 2.10
3227 3403 6.459848 GCTCTAAGCTACGTCTTCCATCTTAA 60.460 42.308 0.00 0.00 38.45 1.85
3228 3404 6.793349 TCTAAGCTACGTCTTCCATCTTAAC 58.207 40.000 0.00 0.00 0.00 2.01
3229 3405 5.401531 AAGCTACGTCTTCCATCTTAACA 57.598 39.130 0.00 0.00 0.00 2.41
3230 3406 5.401531 AGCTACGTCTTCCATCTTAACAA 57.598 39.130 0.00 0.00 0.00 2.83
3231 3407 5.169295 AGCTACGTCTTCCATCTTAACAAC 58.831 41.667 0.00 0.00 0.00 3.32
3232 3408 4.927425 GCTACGTCTTCCATCTTAACAACA 59.073 41.667 0.00 0.00 0.00 3.33
3233 3409 5.062308 GCTACGTCTTCCATCTTAACAACAG 59.938 44.000 0.00 0.00 0.00 3.16
3234 3410 3.746492 ACGTCTTCCATCTTAACAACAGC 59.254 43.478 0.00 0.00 0.00 4.40
3235 3411 3.125316 CGTCTTCCATCTTAACAACAGCC 59.875 47.826 0.00 0.00 0.00 4.85
3236 3412 4.327680 GTCTTCCATCTTAACAACAGCCT 58.672 43.478 0.00 0.00 0.00 4.58
3237 3413 4.393371 GTCTTCCATCTTAACAACAGCCTC 59.607 45.833 0.00 0.00 0.00 4.70
3238 3414 4.041567 TCTTCCATCTTAACAACAGCCTCA 59.958 41.667 0.00 0.00 0.00 3.86
3239 3415 4.365514 TCCATCTTAACAACAGCCTCAA 57.634 40.909 0.00 0.00 0.00 3.02
3240 3416 4.326826 TCCATCTTAACAACAGCCTCAAG 58.673 43.478 0.00 0.00 0.00 3.02
3241 3417 3.441572 CCATCTTAACAACAGCCTCAAGG 59.558 47.826 0.00 0.00 38.53 3.61
3242 3418 3.140325 TCTTAACAACAGCCTCAAGGG 57.860 47.619 0.00 0.00 35.18 3.95
3243 3419 2.162681 CTTAACAACAGCCTCAAGGGG 58.837 52.381 0.00 0.00 35.18 4.79
3244 3420 1.440618 TAACAACAGCCTCAAGGGGA 58.559 50.000 0.00 0.00 35.18 4.81
3245 3421 0.555769 AACAACAGCCTCAAGGGGAA 59.444 50.000 0.00 0.00 35.18 3.97
3246 3422 0.555769 ACAACAGCCTCAAGGGGAAA 59.444 50.000 0.00 0.00 35.18 3.13
3247 3423 1.147817 ACAACAGCCTCAAGGGGAAAT 59.852 47.619 0.00 0.00 35.18 2.17
3248 3424 2.250924 CAACAGCCTCAAGGGGAAATT 58.749 47.619 0.00 0.00 35.18 1.82
3249 3425 2.222227 ACAGCCTCAAGGGGAAATTC 57.778 50.000 0.00 0.00 35.18 2.17
3250 3426 1.272704 ACAGCCTCAAGGGGAAATTCC 60.273 52.381 2.79 2.79 35.23 3.01
3251 3427 1.084018 AGCCTCAAGGGGAAATTCCA 58.916 50.000 14.68 0.00 38.64 3.53
3252 3428 1.432807 AGCCTCAAGGGGAAATTCCAA 59.567 47.619 14.68 0.00 38.64 3.53
3253 3429 1.550524 GCCTCAAGGGGAAATTCCAAC 59.449 52.381 14.68 6.11 38.64 3.77
3254 3430 2.888212 CCTCAAGGGGAAATTCCAACA 58.112 47.619 14.68 0.00 38.64 3.33
3255 3431 2.827921 CCTCAAGGGGAAATTCCAACAG 59.172 50.000 14.68 1.14 38.64 3.16
3256 3432 2.232208 CTCAAGGGGAAATTCCAACAGC 59.768 50.000 14.68 0.00 38.64 4.40
3257 3433 1.969923 CAAGGGGAAATTCCAACAGCA 59.030 47.619 14.68 0.00 38.64 4.41
3258 3434 2.568509 CAAGGGGAAATTCCAACAGCAT 59.431 45.455 14.68 0.00 38.64 3.79
3259 3435 2.460669 AGGGGAAATTCCAACAGCATC 58.539 47.619 14.68 0.00 38.64 3.91
3260 3436 1.134946 GGGGAAATTCCAACAGCATCG 59.865 52.381 14.68 0.00 38.64 3.84
3261 3437 2.091541 GGGAAATTCCAACAGCATCGA 58.908 47.619 14.68 0.00 38.64 3.59
3262 3438 2.159379 GGGAAATTCCAACAGCATCGAC 60.159 50.000 14.68 0.00 38.64 4.20
3263 3439 2.476185 GGAAATTCCAACAGCATCGACG 60.476 50.000 7.23 0.00 36.28 5.12
3264 3440 1.086696 AATTCCAACAGCATCGACGG 58.913 50.000 0.00 0.00 0.00 4.79
3265 3441 0.249120 ATTCCAACAGCATCGACGGA 59.751 50.000 0.00 0.00 0.00 4.69
3266 3442 0.249120 TTCCAACAGCATCGACGGAT 59.751 50.000 0.00 0.00 0.00 4.18
3267 3443 1.107945 TCCAACAGCATCGACGGATA 58.892 50.000 0.00 0.00 0.00 2.59
3268 3444 1.686587 TCCAACAGCATCGACGGATAT 59.313 47.619 0.00 0.00 0.00 1.63
3269 3445 1.794701 CCAACAGCATCGACGGATATG 59.205 52.381 0.00 0.00 0.00 1.78
3272 3448 4.673403 GCATCGACGGATATGCCA 57.327 55.556 8.40 0.00 42.13 4.92
3273 3449 2.912986 GCATCGACGGATATGCCAA 58.087 52.632 8.40 0.00 42.13 4.52
3274 3450 0.512952 GCATCGACGGATATGCCAAC 59.487 55.000 8.40 0.00 42.13 3.77
3275 3451 1.873903 GCATCGACGGATATGCCAACT 60.874 52.381 8.40 0.00 42.13 3.16
3276 3452 2.061773 CATCGACGGATATGCCAACTC 58.938 52.381 0.00 0.00 35.94 3.01
3277 3453 1.107945 TCGACGGATATGCCAACTCA 58.892 50.000 0.00 0.00 35.94 3.41
3278 3454 1.478916 TCGACGGATATGCCAACTCAA 59.521 47.619 0.00 0.00 35.94 3.02
3279 3455 2.093921 TCGACGGATATGCCAACTCAAA 60.094 45.455 0.00 0.00 35.94 2.69
3280 3456 2.675844 CGACGGATATGCCAACTCAAAA 59.324 45.455 0.00 0.00 35.94 2.44
3281 3457 3.242413 CGACGGATATGCCAACTCAAAAG 60.242 47.826 0.00 0.00 35.94 2.27
3282 3458 3.686016 ACGGATATGCCAACTCAAAAGT 58.314 40.909 0.00 0.00 37.32 2.66
3283 3459 3.689649 ACGGATATGCCAACTCAAAAGTC 59.310 43.478 0.00 0.00 33.48 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.887387 GGCACTACCGTTGAGCCAAA 60.887 55.000 14.63 0.00 44.59 3.28
41 42 1.302192 GGCACTACCGTTGAGCCAA 60.302 57.895 14.63 0.00 44.59 4.52
42 43 2.345991 GGCACTACCGTTGAGCCA 59.654 61.111 14.63 0.00 44.59 4.75
43 44 2.436115 GGGCACTACCGTTGAGCC 60.436 66.667 11.87 11.87 44.48 4.70
44 45 1.003718 AAGGGCACTACCGTTGAGC 60.004 57.895 0.00 0.00 44.84 4.26
45 46 0.608640 AGAAGGGCACTACCGTTGAG 59.391 55.000 0.00 0.00 46.51 3.02
46 47 0.320374 CAGAAGGGCACTACCGTTGA 59.680 55.000 0.00 0.00 46.51 3.18
47 48 1.298859 GCAGAAGGGCACTACCGTTG 61.299 60.000 0.00 0.00 46.51 4.10
49 50 1.764571 TTGCAGAAGGGCACTACCGT 61.765 55.000 0.00 0.00 44.86 4.83
50 51 1.003839 TTGCAGAAGGGCACTACCG 60.004 57.895 0.00 0.00 44.86 4.02
51 52 0.250727 TGTTGCAGAAGGGCACTACC 60.251 55.000 0.00 0.00 44.86 3.18
52 53 1.740025 GATGTTGCAGAAGGGCACTAC 59.260 52.381 0.00 0.00 44.86 2.73
53 54 1.675714 CGATGTTGCAGAAGGGCACTA 60.676 52.381 0.00 0.00 44.86 2.74
54 55 0.957395 CGATGTTGCAGAAGGGCACT 60.957 55.000 0.00 0.00 44.86 4.40
55 56 1.503542 CGATGTTGCAGAAGGGCAC 59.496 57.895 0.00 0.00 44.86 5.01
56 57 1.675310 CCGATGTTGCAGAAGGGCA 60.675 57.895 0.00 0.00 43.19 5.36
57 58 0.749454 ATCCGATGTTGCAGAAGGGC 60.749 55.000 0.00 0.00 0.00 5.19
58 59 2.487934 CTATCCGATGTTGCAGAAGGG 58.512 52.381 0.00 0.00 0.00 3.95
59 60 2.487934 CCTATCCGATGTTGCAGAAGG 58.512 52.381 0.00 0.00 0.00 3.46
60 61 2.158900 ACCCTATCCGATGTTGCAGAAG 60.159 50.000 0.00 0.00 0.00 2.85
61 62 1.837439 ACCCTATCCGATGTTGCAGAA 59.163 47.619 0.00 0.00 0.00 3.02
62 63 1.496060 ACCCTATCCGATGTTGCAGA 58.504 50.000 0.00 0.00 0.00 4.26
63 64 3.006859 TCATACCCTATCCGATGTTGCAG 59.993 47.826 0.00 0.00 0.00 4.41
64 65 2.969262 TCATACCCTATCCGATGTTGCA 59.031 45.455 0.00 0.00 0.00 4.08
65 66 3.326747 GTCATACCCTATCCGATGTTGC 58.673 50.000 0.00 0.00 0.00 4.17
66 67 3.254903 TCGTCATACCCTATCCGATGTTG 59.745 47.826 0.00 0.00 0.00 3.33
67 68 3.493334 TCGTCATACCCTATCCGATGTT 58.507 45.455 0.00 0.00 0.00 2.71
68 69 3.150458 TCGTCATACCCTATCCGATGT 57.850 47.619 0.00 0.00 0.00 3.06
69 70 3.506455 AGTTCGTCATACCCTATCCGATG 59.494 47.826 0.00 0.00 0.00 3.84
70 71 3.764218 AGTTCGTCATACCCTATCCGAT 58.236 45.455 0.00 0.00 0.00 4.18
71 72 3.219176 AGTTCGTCATACCCTATCCGA 57.781 47.619 0.00 0.00 0.00 4.55
72 73 3.067742 ACAAGTTCGTCATACCCTATCCG 59.932 47.826 0.00 0.00 0.00 4.18
73 74 4.098960 TGACAAGTTCGTCATACCCTATCC 59.901 45.833 4.62 0.00 40.94 2.59
74 75 5.258456 TGACAAGTTCGTCATACCCTATC 57.742 43.478 4.62 0.00 40.94 2.08
75 76 5.670792 TTGACAAGTTCGTCATACCCTAT 57.329 39.130 8.37 0.00 45.03 2.57
76 77 5.670792 ATTGACAAGTTCGTCATACCCTA 57.329 39.130 8.37 0.00 45.03 3.53
77 78 4.553330 ATTGACAAGTTCGTCATACCCT 57.447 40.909 8.37 0.00 45.03 4.34
78 79 5.622770 AAATTGACAAGTTCGTCATACCC 57.377 39.130 8.37 0.00 45.03 3.69
79 80 5.788531 CGAAAATTGACAAGTTCGTCATACC 59.211 40.000 20.56 0.00 45.03 2.73
80 81 5.788531 CCGAAAATTGACAAGTTCGTCATAC 59.211 40.000 24.08 4.87 45.03 2.39
81 82 5.106869 CCCGAAAATTGACAAGTTCGTCATA 60.107 40.000 24.08 2.79 45.03 2.15
82 83 4.320202 CCCGAAAATTGACAAGTTCGTCAT 60.320 41.667 24.08 3.44 45.03 3.06
83 84 3.002862 CCCGAAAATTGACAAGTTCGTCA 59.997 43.478 24.08 4.62 44.05 4.35
84 85 3.002965 ACCCGAAAATTGACAAGTTCGTC 59.997 43.478 24.08 11.12 40.88 4.20
85 86 2.946990 ACCCGAAAATTGACAAGTTCGT 59.053 40.909 24.08 12.03 40.88 3.85
86 87 3.002862 TGACCCGAAAATTGACAAGTTCG 59.997 43.478 21.36 21.36 41.85 3.95
87 88 4.561735 TGACCCGAAAATTGACAAGTTC 57.438 40.909 0.71 3.22 0.00 3.01
88 89 4.320202 CGATGACCCGAAAATTGACAAGTT 60.320 41.667 0.00 0.00 0.00 2.66
89 90 3.188460 CGATGACCCGAAAATTGACAAGT 59.812 43.478 0.00 0.00 0.00 3.16
90 91 3.426159 CCGATGACCCGAAAATTGACAAG 60.426 47.826 0.00 0.00 0.00 3.16
91 92 2.486203 CCGATGACCCGAAAATTGACAA 59.514 45.455 0.00 0.00 0.00 3.18
92 93 2.080693 CCGATGACCCGAAAATTGACA 58.919 47.619 0.00 0.00 0.00 3.58
93 94 2.352388 TCCGATGACCCGAAAATTGAC 58.648 47.619 0.00 0.00 0.00 3.18
94 95 2.772077 TCCGATGACCCGAAAATTGA 57.228 45.000 0.00 0.00 0.00 2.57
95 96 2.747446 ACTTCCGATGACCCGAAAATTG 59.253 45.455 0.00 0.00 0.00 2.32
96 97 3.007635 GACTTCCGATGACCCGAAAATT 58.992 45.455 0.00 0.00 0.00 1.82
97 98 2.236395 AGACTTCCGATGACCCGAAAAT 59.764 45.455 0.00 0.00 0.00 1.82
98 99 1.621814 AGACTTCCGATGACCCGAAAA 59.378 47.619 0.00 0.00 0.00 2.29
99 100 1.067142 CAGACTTCCGATGACCCGAAA 60.067 52.381 0.00 0.00 0.00 3.46
100 101 0.530744 CAGACTTCCGATGACCCGAA 59.469 55.000 0.00 0.00 0.00 4.30
101 102 0.611062 ACAGACTTCCGATGACCCGA 60.611 55.000 0.00 0.00 0.00 5.14
102 103 0.179134 GACAGACTTCCGATGACCCG 60.179 60.000 0.00 0.00 0.00 5.28
103 104 0.895530 TGACAGACTTCCGATGACCC 59.104 55.000 0.00 0.00 0.00 4.46
104 105 2.743636 TTGACAGACTTCCGATGACC 57.256 50.000 0.00 0.00 0.00 4.02
105 106 3.430218 CACTTTGACAGACTTCCGATGAC 59.570 47.826 0.00 0.00 0.00 3.06
106 107 3.653344 CACTTTGACAGACTTCCGATGA 58.347 45.455 0.00 0.00 0.00 2.92
107 108 2.158449 GCACTTTGACAGACTTCCGATG 59.842 50.000 0.00 0.00 0.00 3.84
108 109 2.417719 GCACTTTGACAGACTTCCGAT 58.582 47.619 0.00 0.00 0.00 4.18
109 110 1.540363 GGCACTTTGACAGACTTCCGA 60.540 52.381 0.00 0.00 0.00 4.55
110 111 0.868406 GGCACTTTGACAGACTTCCG 59.132 55.000 0.00 0.00 0.00 4.30
111 112 2.262423 AGGCACTTTGACAGACTTCC 57.738 50.000 0.00 0.00 27.25 3.46
125 126 0.788391 CGACCGTTAAGTCAAGGCAC 59.212 55.000 0.00 0.00 36.52 5.01
126 127 0.947180 GCGACCGTTAAGTCAAGGCA 60.947 55.000 0.00 0.00 36.52 4.75
127 128 1.785951 GCGACCGTTAAGTCAAGGC 59.214 57.895 0.00 0.00 36.52 4.35
128 129 1.952266 GCGCGACCGTTAAGTCAAGG 61.952 60.000 12.10 0.00 36.52 3.61
129 130 1.414897 GCGCGACCGTTAAGTCAAG 59.585 57.895 12.10 0.00 36.52 3.02
130 131 2.023223 GGCGCGACCGTTAAGTCAA 61.023 57.895 12.10 0.00 36.52 3.18
131 132 2.431260 GGCGCGACCGTTAAGTCA 60.431 61.111 12.10 0.00 36.52 3.41
132 133 0.526096 TATGGCGCGACCGTTAAGTC 60.526 55.000 10.82 0.00 43.94 3.01
133 134 0.803380 GTATGGCGCGACCGTTAAGT 60.803 55.000 10.82 0.00 43.94 2.24
134 135 0.802994 TGTATGGCGCGACCGTTAAG 60.803 55.000 10.82 0.00 43.94 1.85
135 136 0.179105 ATGTATGGCGCGACCGTTAA 60.179 50.000 10.82 4.16 43.94 2.01
136 137 0.872451 CATGTATGGCGCGACCGTTA 60.872 55.000 10.82 5.29 43.94 3.18
137 138 2.171079 CATGTATGGCGCGACCGTT 61.171 57.895 10.82 4.82 43.94 4.44
138 139 2.584970 CATGTATGGCGCGACCGT 60.585 61.111 10.82 14.56 43.94 4.83
139 140 3.337889 CCATGTATGGCGCGACCG 61.338 66.667 10.82 0.00 43.94 4.79
148 149 7.538678 GTGTTTCTTCTAACTTTGCCATGTATG 59.461 37.037 0.00 0.00 0.00 2.39
149 150 7.230510 TGTGTTTCTTCTAACTTTGCCATGTAT 59.769 33.333 0.00 0.00 0.00 2.29
150 151 6.544197 TGTGTTTCTTCTAACTTTGCCATGTA 59.456 34.615 0.00 0.00 0.00 2.29
151 152 5.359576 TGTGTTTCTTCTAACTTTGCCATGT 59.640 36.000 0.00 0.00 0.00 3.21
152 153 5.830912 TGTGTTTCTTCTAACTTTGCCATG 58.169 37.500 0.00 0.00 0.00 3.66
153 154 6.463995 TTGTGTTTCTTCTAACTTTGCCAT 57.536 33.333 0.00 0.00 0.00 4.40
154 155 5.906113 TTGTGTTTCTTCTAACTTTGCCA 57.094 34.783 0.00 0.00 0.00 4.92
155 156 5.518847 GGTTTGTGTTTCTTCTAACTTTGCC 59.481 40.000 0.00 0.00 0.00 4.52
156 157 6.034577 GTGGTTTGTGTTTCTTCTAACTTTGC 59.965 38.462 0.00 0.00 0.00 3.68
157 158 6.250527 CGTGGTTTGTGTTTCTTCTAACTTTG 59.749 38.462 0.00 0.00 0.00 2.77
158 159 6.319399 CGTGGTTTGTGTTTCTTCTAACTTT 58.681 36.000 0.00 0.00 0.00 2.66
159 160 5.163693 CCGTGGTTTGTGTTTCTTCTAACTT 60.164 40.000 0.00 0.00 0.00 2.66
160 161 4.334481 CCGTGGTTTGTGTTTCTTCTAACT 59.666 41.667 0.00 0.00 0.00 2.24
161 162 4.496840 CCCGTGGTTTGTGTTTCTTCTAAC 60.497 45.833 0.00 0.00 0.00 2.34
162 163 3.628487 CCCGTGGTTTGTGTTTCTTCTAA 59.372 43.478 0.00 0.00 0.00 2.10
163 164 3.207778 CCCGTGGTTTGTGTTTCTTCTA 58.792 45.455 0.00 0.00 0.00 2.10
164 165 2.021457 CCCGTGGTTTGTGTTTCTTCT 58.979 47.619 0.00 0.00 0.00 2.85
165 166 1.535226 GCCCGTGGTTTGTGTTTCTTC 60.535 52.381 0.00 0.00 0.00 2.87
166 167 0.458260 GCCCGTGGTTTGTGTTTCTT 59.542 50.000 0.00 0.00 0.00 2.52
167 168 1.720694 CGCCCGTGGTTTGTGTTTCT 61.721 55.000 0.00 0.00 0.00 2.52
168 169 1.298788 CGCCCGTGGTTTGTGTTTC 60.299 57.895 0.00 0.00 0.00 2.78
169 170 1.749638 TCGCCCGTGGTTTGTGTTT 60.750 52.632 0.00 0.00 0.00 2.83
170 171 2.124653 TCGCCCGTGGTTTGTGTT 60.125 55.556 0.00 0.00 0.00 3.32
171 172 2.898343 GTCGCCCGTGGTTTGTGT 60.898 61.111 0.00 0.00 0.00 3.72
172 173 1.791103 AATGTCGCCCGTGGTTTGTG 61.791 55.000 0.00 0.00 0.00 3.33
173 174 1.104577 AAATGTCGCCCGTGGTTTGT 61.105 50.000 0.00 0.00 0.00 2.83
174 175 0.386731 GAAATGTCGCCCGTGGTTTG 60.387 55.000 0.00 0.00 0.00 2.93
175 176 1.520600 GGAAATGTCGCCCGTGGTTT 61.521 55.000 0.00 0.00 0.00 3.27
176 177 1.969589 GGAAATGTCGCCCGTGGTT 60.970 57.895 0.00 0.00 0.00 3.67
177 178 2.359478 GGAAATGTCGCCCGTGGT 60.359 61.111 0.00 0.00 0.00 4.16
178 179 0.462937 TATGGAAATGTCGCCCGTGG 60.463 55.000 0.00 0.00 0.00 4.94
179 180 1.374560 TTATGGAAATGTCGCCCGTG 58.625 50.000 0.00 0.00 0.00 4.94
180 181 2.116827 TTTATGGAAATGTCGCCCGT 57.883 45.000 0.00 0.00 0.00 5.28
181 182 3.364964 GCTATTTATGGAAATGTCGCCCG 60.365 47.826 0.00 0.00 35.96 6.13
182 183 3.568007 TGCTATTTATGGAAATGTCGCCC 59.432 43.478 0.00 0.00 35.96 6.13
183 184 4.275936 AGTGCTATTTATGGAAATGTCGCC 59.724 41.667 0.00 0.00 35.96 5.54
184 185 5.424121 AGTGCTATTTATGGAAATGTCGC 57.576 39.130 0.00 0.00 35.96 5.19
185 186 7.587757 GCTTTAGTGCTATTTATGGAAATGTCG 59.412 37.037 0.00 0.00 35.96 4.35
186 187 8.405531 TGCTTTAGTGCTATTTATGGAAATGTC 58.594 33.333 0.00 0.00 35.96 3.06
187 188 8.292444 TGCTTTAGTGCTATTTATGGAAATGT 57.708 30.769 0.00 0.00 35.96 2.71
188 189 9.754382 ATTGCTTTAGTGCTATTTATGGAAATG 57.246 29.630 0.00 0.00 35.96 2.32
189 190 9.754382 CATTGCTTTAGTGCTATTTATGGAAAT 57.246 29.630 0.00 0.00 38.79 2.17
190 191 8.748412 ACATTGCTTTAGTGCTATTTATGGAAA 58.252 29.630 0.00 0.00 0.00 3.13
191 192 8.292444 ACATTGCTTTAGTGCTATTTATGGAA 57.708 30.769 0.00 0.00 0.00 3.53
192 193 7.555914 TGACATTGCTTTAGTGCTATTTATGGA 59.444 33.333 0.00 0.00 0.00 3.41
193 194 7.706159 TGACATTGCTTTAGTGCTATTTATGG 58.294 34.615 0.00 0.00 0.00 2.74
194 195 9.740239 AATGACATTGCTTTAGTGCTATTTATG 57.260 29.630 0.00 0.00 0.00 1.90
195 196 9.740239 CAATGACATTGCTTTAGTGCTATTTAT 57.260 29.630 14.96 0.00 32.92 1.40
196 197 8.955388 TCAATGACATTGCTTTAGTGCTATTTA 58.045 29.630 21.17 0.00 40.05 1.40
197 198 7.829725 TCAATGACATTGCTTTAGTGCTATTT 58.170 30.769 21.17 0.00 40.05 1.40
198 199 7.395190 TCAATGACATTGCTTTAGTGCTATT 57.605 32.000 21.17 0.00 40.05 1.73
199 200 6.459298 GCTCAATGACATTGCTTTAGTGCTAT 60.459 38.462 21.17 0.00 40.05 2.97
200 201 5.163723 GCTCAATGACATTGCTTTAGTGCTA 60.164 40.000 21.17 1.71 40.05 3.49
201 202 4.380233 GCTCAATGACATTGCTTTAGTGCT 60.380 41.667 21.17 0.00 40.05 4.40
202 203 3.855950 GCTCAATGACATTGCTTTAGTGC 59.144 43.478 21.17 12.47 40.05 4.40
203 204 5.050644 TGCTCAATGACATTGCTTTAGTG 57.949 39.130 21.17 7.71 40.05 2.74
204 205 5.242393 ACTTGCTCAATGACATTGCTTTAGT 59.758 36.000 21.17 17.26 40.05 2.24
205 206 5.706916 ACTTGCTCAATGACATTGCTTTAG 58.293 37.500 21.17 14.69 40.05 1.85
206 207 5.710513 ACTTGCTCAATGACATTGCTTTA 57.289 34.783 21.17 5.37 40.05 1.85
207 208 4.595762 ACTTGCTCAATGACATTGCTTT 57.404 36.364 21.17 1.96 40.05 3.51
208 209 4.595762 AACTTGCTCAATGACATTGCTT 57.404 36.364 21.17 1.46 40.05 3.91
209 210 4.595762 AAACTTGCTCAATGACATTGCT 57.404 36.364 21.17 0.00 40.05 3.91
210 211 4.325472 GCTAAACTTGCTCAATGACATTGC 59.675 41.667 21.17 12.44 40.05 3.56
211 212 5.571741 CAGCTAAACTTGCTCAATGACATTG 59.428 40.000 20.15 20.15 38.92 2.82
212 213 5.242393 ACAGCTAAACTTGCTCAATGACATT 59.758 36.000 0.00 0.00 38.92 2.71
213 214 4.763793 ACAGCTAAACTTGCTCAATGACAT 59.236 37.500 0.00 0.00 38.92 3.06
214 215 4.023792 CACAGCTAAACTTGCTCAATGACA 60.024 41.667 0.00 0.00 38.92 3.58
215 216 4.214119 TCACAGCTAAACTTGCTCAATGAC 59.786 41.667 0.00 0.00 38.92 3.06
216 217 4.214119 GTCACAGCTAAACTTGCTCAATGA 59.786 41.667 0.00 0.00 38.92 2.57
217 218 4.470462 GTCACAGCTAAACTTGCTCAATG 58.530 43.478 0.00 0.00 38.92 2.82
218 219 3.187227 CGTCACAGCTAAACTTGCTCAAT 59.813 43.478 0.00 0.00 38.92 2.57
219 220 2.543848 CGTCACAGCTAAACTTGCTCAA 59.456 45.455 0.00 0.00 38.92 3.02
220 221 2.135139 CGTCACAGCTAAACTTGCTCA 58.865 47.619 0.00 0.00 38.92 4.26
221 222 2.404215 TCGTCACAGCTAAACTTGCTC 58.596 47.619 0.00 0.00 38.92 4.26
222 223 2.408050 CTCGTCACAGCTAAACTTGCT 58.592 47.619 0.00 0.00 42.06 3.91
223 224 1.461127 CCTCGTCACAGCTAAACTTGC 59.539 52.381 0.00 0.00 0.00 4.01
224 225 2.069273 CCCTCGTCACAGCTAAACTTG 58.931 52.381 0.00 0.00 0.00 3.16
225 226 1.968493 TCCCTCGTCACAGCTAAACTT 59.032 47.619 0.00 0.00 0.00 2.66
226 227 1.629043 TCCCTCGTCACAGCTAAACT 58.371 50.000 0.00 0.00 0.00 2.66
227 228 2.450609 TTCCCTCGTCACAGCTAAAC 57.549 50.000 0.00 0.00 0.00 2.01
228 229 3.334691 CAATTCCCTCGTCACAGCTAAA 58.665 45.455 0.00 0.00 0.00 1.85
229 230 2.935238 GCAATTCCCTCGTCACAGCTAA 60.935 50.000 0.00 0.00 0.00 3.09
230 231 1.405526 GCAATTCCCTCGTCACAGCTA 60.406 52.381 0.00 0.00 0.00 3.32
231 232 0.674895 GCAATTCCCTCGTCACAGCT 60.675 55.000 0.00 0.00 0.00 4.24
232 233 0.955428 TGCAATTCCCTCGTCACAGC 60.955 55.000 0.00 0.00 0.00 4.40
233 234 0.798776 GTGCAATTCCCTCGTCACAG 59.201 55.000 0.00 0.00 0.00 3.66
234 235 0.107643 TGTGCAATTCCCTCGTCACA 59.892 50.000 0.00 0.00 32.78 3.58
235 236 1.234821 TTGTGCAATTCCCTCGTCAC 58.765 50.000 0.00 0.00 0.00 3.67
236 237 1.606668 GTTTGTGCAATTCCCTCGTCA 59.393 47.619 0.00 0.00 0.00 4.35
237 238 1.068541 GGTTTGTGCAATTCCCTCGTC 60.069 52.381 0.00 0.00 0.00 4.20
238 239 0.958822 GGTTTGTGCAATTCCCTCGT 59.041 50.000 0.00 0.00 0.00 4.18
239 240 0.958091 TGGTTTGTGCAATTCCCTCG 59.042 50.000 0.00 0.00 0.00 4.63
263 264 2.017049 GTGCAACACTAGCCCCAATAG 58.983 52.381 0.00 0.00 36.32 1.73
285 286 6.731164 CAACAAATCCGTAAAGTAGGTGTTT 58.269 36.000 0.00 0.00 0.00 2.83
296 297 3.066342 TGTTTTCCGCAACAAATCCGTAA 59.934 39.130 0.00 0.00 33.60 3.18
320 321 9.402320 AGTTGCAATGTATTACACCAATATGTA 57.598 29.630 0.59 0.00 33.85 2.29
383 384 1.184970 AGCGGGACCCATTTGTTTGG 61.185 55.000 12.15 0.00 36.46 3.28
384 385 0.678950 AAGCGGGACCCATTTGTTTG 59.321 50.000 12.15 0.00 0.00 2.93
386 387 0.469144 ACAAGCGGGACCCATTTGTT 60.469 50.000 19.19 7.96 29.45 2.83
390 391 0.696501 ACTTACAAGCGGGACCCATT 59.303 50.000 12.15 1.20 0.00 3.16
400 401 1.666888 GCCACATGTGCACTTACAAGC 60.667 52.381 20.81 10.92 33.69 4.01
523 585 5.163693 ACGGAAGTTTTATTTAGCCCATTCG 60.164 40.000 0.00 0.00 46.40 3.34
544 606 5.049405 GGATCAATGGTTTGCTAGATAACGG 60.049 44.000 0.00 0.00 32.61 4.44
546 608 6.942532 TGGATCAATGGTTTGCTAGATAAC 57.057 37.500 0.00 0.00 32.61 1.89
553 615 3.054948 CCCATTTGGATCAATGGTTTGCT 60.055 43.478 18.65 0.00 37.39 3.91
554 616 3.272581 CCCATTTGGATCAATGGTTTGC 58.727 45.455 18.65 0.00 37.39 3.68
558 620 2.946791 ACCCCATTTGGATCAATGGT 57.053 45.000 18.65 3.94 37.39 3.55
662 724 6.507900 TGCCGAACTTGTTTCATTCAAATTA 58.492 32.000 0.00 0.00 33.24 1.40
668 730 3.670055 CACATGCCGAACTTGTTTCATTC 59.330 43.478 0.00 0.00 34.59 2.67
691 753 3.809832 TGAAGGTTCTGAGCGAAAAGAAG 59.190 43.478 0.00 0.00 33.21 2.85
692 754 3.804036 TGAAGGTTCTGAGCGAAAAGAA 58.196 40.909 0.00 0.00 32.41 2.52
693 755 3.469008 TGAAGGTTCTGAGCGAAAAGA 57.531 42.857 0.00 0.00 32.41 2.52
694 756 3.312421 TGTTGAAGGTTCTGAGCGAAAAG 59.688 43.478 0.00 0.00 32.41 2.27
695 757 3.275143 TGTTGAAGGTTCTGAGCGAAAA 58.725 40.909 0.00 0.00 32.41 2.29
699 761 2.154854 TCTGTTGAAGGTTCTGAGCG 57.845 50.000 0.00 0.00 0.00 5.03
705 767 5.552178 AGGACTACAATCTGTTGAAGGTTC 58.448 41.667 0.00 0.00 38.71 3.62
718 780 6.284459 GCAAGTTCATAGCTAGGACTACAAT 58.716 40.000 7.78 0.00 0.00 2.71
722 784 3.641906 GGGCAAGTTCATAGCTAGGACTA 59.358 47.826 7.78 0.00 0.00 2.59
823 886 1.029408 TGCCATGTACGGTGCAATCC 61.029 55.000 2.34 0.00 0.00 3.01
825 888 1.252175 TTTGCCATGTACGGTGCAAT 58.748 45.000 14.06 0.00 42.66 3.56
990 1057 1.637553 ACAGTTGCCATCCTGATTCCT 59.362 47.619 0.00 0.00 32.93 3.36
1003 1070 0.595825 GTGCTTGCTCCAACAGTTGC 60.596 55.000 7.88 0.00 0.00 4.17
1064 1131 1.399744 TTGAGTGTCTCGCCCACTGT 61.400 55.000 6.24 0.00 43.00 3.55
1111 1178 2.882761 GCTCCAGCATATCAGCATTCAA 59.117 45.455 0.00 0.00 41.59 2.69
1232 1299 4.157120 GCGGGTCTACCACGCCAT 62.157 66.667 18.45 0.00 44.35 4.40
1309 1376 3.892581 GTAGCCGCCCAATGCAGC 61.893 66.667 0.00 0.00 44.01 5.25
1414 1481 2.964310 GCTGCAGGAGAAGGAGGCA 61.964 63.158 17.12 0.00 0.00 4.75
1491 1558 4.767892 AGGGAGGCAAGGGGAGGG 62.768 72.222 0.00 0.00 0.00 4.30
1533 1600 0.332632 AAGGGCCATGCAGAAAGCTA 59.667 50.000 6.18 0.00 45.94 3.32
1554 1621 1.602851 ACCATCCGTAGTCGAAGATCG 59.397 52.381 0.00 0.00 40.67 3.69
1590 1657 2.435663 CTGCCACCCACATGGACA 59.564 61.111 0.00 0.00 43.02 4.02
1699 1766 0.038599 AATGCTGTCCTCATGCCACA 59.961 50.000 0.00 0.00 0.00 4.17
1797 1864 1.254284 ACGAGGAGGAACTGGAGCTG 61.254 60.000 0.00 0.00 41.55 4.24
1858 1925 0.912486 ACCAGGTAAGGCTTAGGCAG 59.088 55.000 7.33 0.18 40.87 4.85
1861 1934 1.486726 CTCCACCAGGTAAGGCTTAGG 59.513 57.143 7.33 8.29 35.89 2.69
1884 1957 5.065914 CCAACCAGAAGAAGTTCAGAATCA 58.934 41.667 5.50 0.00 34.82 2.57
1885 1958 4.083057 GCCAACCAGAAGAAGTTCAGAATC 60.083 45.833 5.50 0.00 34.82 2.52
1939 2012 1.682684 GGAGGTCAGAGAGCCGGAA 60.683 63.158 5.05 0.00 0.00 4.30
2058 2152 1.281867 CCATTGTTAGGTGGGCTGAGA 59.718 52.381 0.00 0.00 0.00 3.27
2087 2181 1.075050 CCCTGCCCAGATCATATTGCT 59.925 52.381 0.00 0.00 0.00 3.91
2160 2254 1.098050 CAAGACTGTATGGCCTTGGC 58.902 55.000 3.32 2.49 34.11 4.52
2267 2361 2.257894 CTGATCACTGCAGAAGACGTC 58.742 52.381 23.35 7.70 35.39 4.34
2268 2362 1.615883 ACTGATCACTGCAGAAGACGT 59.384 47.619 23.35 12.30 36.86 4.34
2376 2500 8.820933 CACAATACTTAACCATCTGTAGACATG 58.179 37.037 0.00 0.00 0.00 3.21
2382 2506 9.865321 GTCTTACACAATACTTAACCATCTGTA 57.135 33.333 0.00 0.00 0.00 2.74
2457 2586 3.674997 ACACACAGCCAAATACTACCTG 58.325 45.455 0.00 0.00 0.00 4.00
2481 2610 2.307392 AGAGACAGAGAGTGTAGAGGCA 59.693 50.000 0.00 0.00 40.56 4.75
2482 2611 2.682856 CAGAGACAGAGAGTGTAGAGGC 59.317 54.545 0.00 0.00 40.56 4.70
2484 2613 4.832248 AGACAGAGACAGAGAGTGTAGAG 58.168 47.826 0.00 0.00 40.56 2.43
2485 2614 4.901197 AGACAGAGACAGAGAGTGTAGA 57.099 45.455 0.00 0.00 40.56 2.59
2486 2615 5.730550 AGTAGACAGAGACAGAGAGTGTAG 58.269 45.833 0.00 0.00 40.56 2.74
2487 2616 5.748670 AGTAGACAGAGACAGAGAGTGTA 57.251 43.478 0.00 0.00 40.56 2.90
2488 2617 4.634012 AGTAGACAGAGACAGAGAGTGT 57.366 45.455 0.00 0.00 44.49 3.55
2489 2618 5.957842 AAAGTAGACAGAGACAGAGAGTG 57.042 43.478 0.00 0.00 0.00 3.51
2490 2619 5.830991 ACAAAAGTAGACAGAGACAGAGAGT 59.169 40.000 0.00 0.00 0.00 3.24
2491 2620 6.325919 ACAAAAGTAGACAGAGACAGAGAG 57.674 41.667 0.00 0.00 0.00 3.20
2492 2621 6.321435 TGAACAAAAGTAGACAGAGACAGAGA 59.679 38.462 0.00 0.00 0.00 3.10
2493 2622 6.507900 TGAACAAAAGTAGACAGAGACAGAG 58.492 40.000 0.00 0.00 0.00 3.35
2494 2623 6.321435 TCTGAACAAAAGTAGACAGAGACAGA 59.679 38.462 0.00 0.00 32.04 3.41
2495 2624 6.419413 GTCTGAACAAAAGTAGACAGAGACAG 59.581 42.308 0.00 0.00 39.39 3.51
2496 2625 6.127451 TGTCTGAACAAAAGTAGACAGAGACA 60.127 38.462 0.00 0.00 43.14 3.41
2497 2626 6.273825 TGTCTGAACAAAAGTAGACAGAGAC 58.726 40.000 0.00 0.00 43.14 3.36
2498 2627 6.465439 TGTCTGAACAAAAGTAGACAGAGA 57.535 37.500 0.00 0.00 43.14 3.10
2535 2678 4.520111 CCAGCATATTTCCGAATTCATCCA 59.480 41.667 6.22 0.00 0.00 3.41
2589 2741 2.866156 CAACCCAGCAGTATATGTCACG 59.134 50.000 0.00 0.00 0.00 4.35
2590 2742 3.623060 CACAACCCAGCAGTATATGTCAC 59.377 47.826 0.00 0.00 0.00 3.67
2621 2773 6.153170 TCACATCACAGTGCATATTTCCAAAT 59.847 34.615 0.00 0.00 39.35 2.32
2682 2839 4.635324 TGCAATTCAGCGTCATCAAGATTA 59.365 37.500 0.00 0.00 37.31 1.75
2706 2863 1.081242 GCACCTGGCATGACAAACG 60.081 57.895 1.11 0.00 43.97 3.60
2707 2864 4.972591 GCACCTGGCATGACAAAC 57.027 55.556 1.11 0.00 43.97 2.93
2770 2927 2.241160 TCGTAGCAGTAAGTTGGACCA 58.759 47.619 0.00 0.00 0.00 4.02
2788 2945 7.148689 GGGTTTGTGTACTGTTAGAGTTTATCG 60.149 40.741 0.00 0.00 35.96 2.92
2807 2964 4.899457 TCGGATGTATCTATCAGGGTTTGT 59.101 41.667 0.00 0.00 0.00 2.83
2812 2969 4.336280 TCAGTCGGATGTATCTATCAGGG 58.664 47.826 0.00 0.00 0.00 4.45
2838 2995 7.221067 CCTGTTAACGTGTCAGATATTTCTCTC 59.779 40.741 13.84 0.00 0.00 3.20
2839 2996 7.036220 CCTGTTAACGTGTCAGATATTTCTCT 58.964 38.462 13.84 0.00 0.00 3.10
2840 2997 6.237861 GCCTGTTAACGTGTCAGATATTTCTC 60.238 42.308 13.84 0.00 0.00 2.87
2841 2998 5.581085 GCCTGTTAACGTGTCAGATATTTCT 59.419 40.000 13.84 0.00 0.00 2.52
2842 2999 5.350365 TGCCTGTTAACGTGTCAGATATTTC 59.650 40.000 13.84 0.00 0.00 2.17
2843 3000 5.242434 TGCCTGTTAACGTGTCAGATATTT 58.758 37.500 13.84 0.00 0.00 1.40
2846 3003 3.945981 TGCCTGTTAACGTGTCAGATA 57.054 42.857 13.84 3.16 0.00 1.98
2848 3005 2.605837 TTGCCTGTTAACGTGTCAGA 57.394 45.000 13.84 0.00 0.00 3.27
2849 3006 3.498397 AGATTTGCCTGTTAACGTGTCAG 59.502 43.478 0.26 0.00 0.00 3.51
2850 3007 3.472652 AGATTTGCCTGTTAACGTGTCA 58.527 40.909 0.26 0.00 0.00 3.58
2851 3008 5.796350 ATAGATTTGCCTGTTAACGTGTC 57.204 39.130 0.26 0.00 0.00 3.67
2852 3009 5.938125 AGAATAGATTTGCCTGTTAACGTGT 59.062 36.000 0.26 0.00 0.00 4.49
2853 3010 6.422776 AGAATAGATTTGCCTGTTAACGTG 57.577 37.500 0.26 0.00 0.00 4.49
2854 3011 7.553334 TCTAGAATAGATTTGCCTGTTAACGT 58.447 34.615 0.26 0.00 44.15 3.99
2870 3027 7.901029 TCACCTTGGAGCATTATCTAGAATAG 58.099 38.462 0.00 0.00 41.04 1.73
2871 3028 7.855784 TCACCTTGGAGCATTATCTAGAATA 57.144 36.000 0.00 0.00 0.00 1.75
2872 3029 6.753913 TCACCTTGGAGCATTATCTAGAAT 57.246 37.500 0.00 0.00 0.00 2.40
2873 3030 6.156949 ACTTCACCTTGGAGCATTATCTAGAA 59.843 38.462 0.00 0.00 0.00 2.10
2891 3048 3.040147 TGATCCGAACTTCACTTCACC 57.960 47.619 0.00 0.00 0.00 4.02
2897 3054 3.600388 ACAAGGATGATCCGAACTTCAC 58.400 45.455 5.71 0.00 42.75 3.18
2898 3055 3.515502 AGACAAGGATGATCCGAACTTCA 59.484 43.478 5.71 0.00 42.75 3.02
2923 3080 0.528924 GCAAGGTGCATCATGAAGCA 59.471 50.000 20.99 20.99 44.26 3.91
2994 3155 4.213059 GCTTAATGAACCTAGATGCTCTGC 59.787 45.833 0.00 0.00 0.00 4.26
3059 3235 7.915397 TCTCAAGAAACCGAAGATTTTCAAAAG 59.085 33.333 0.00 0.00 33.58 2.27
3080 3256 4.524802 AATGGGCAATCACCTATCTCAA 57.475 40.909 0.00 0.00 29.26 3.02
3081 3257 5.848286 ATAATGGGCAATCACCTATCTCA 57.152 39.130 0.00 0.00 29.26 3.27
3082 3258 6.071728 CCAAATAATGGGCAATCACCTATCTC 60.072 42.308 0.00 0.00 46.27 2.75
3083 3259 5.776716 CCAAATAATGGGCAATCACCTATCT 59.223 40.000 0.00 0.00 46.27 1.98
3084 3260 6.029346 CCAAATAATGGGCAATCACCTATC 57.971 41.667 0.00 0.00 46.27 2.08
3103 3279 9.540538 TGATATCCAGAAAGGTATTTTTCCAAA 57.459 29.630 0.00 0.00 37.70 3.28
3104 3280 9.540538 TTGATATCCAGAAAGGTATTTTTCCAA 57.459 29.630 0.00 0.00 37.70 3.53
3105 3281 9.540538 TTTGATATCCAGAAAGGTATTTTTCCA 57.459 29.630 0.00 0.00 37.70 3.53
3107 3283 9.521503 GCTTTGATATCCAGAAAGGTATTTTTC 57.478 33.333 13.15 0.00 39.02 2.29
3108 3284 9.259832 AGCTTTGATATCCAGAAAGGTATTTTT 57.740 29.630 13.91 0.00 36.05 1.94
3109 3285 8.829373 AGCTTTGATATCCAGAAAGGTATTTT 57.171 30.769 13.91 0.00 36.05 1.82
3110 3286 9.566432 CTAGCTTTGATATCCAGAAAGGTATTT 57.434 33.333 18.62 0.00 38.38 1.40
3111 3287 7.663493 GCTAGCTTTGATATCCAGAAAGGTATT 59.337 37.037 18.62 0.00 38.38 1.89
3112 3288 7.164803 GCTAGCTTTGATATCCAGAAAGGTAT 58.835 38.462 18.62 0.20 38.38 2.73
3113 3289 6.099701 TGCTAGCTTTGATATCCAGAAAGGTA 59.900 38.462 17.23 17.85 38.18 3.08
3114 3290 5.104360 TGCTAGCTTTGATATCCAGAAAGGT 60.104 40.000 17.23 17.61 39.87 3.50
3115 3291 5.371526 TGCTAGCTTTGATATCCAGAAAGG 58.628 41.667 17.23 0.00 39.47 3.11
3116 3292 6.932356 TTGCTAGCTTTGATATCCAGAAAG 57.068 37.500 17.23 5.10 0.00 2.62
3117 3293 7.886629 ATTTGCTAGCTTTGATATCCAGAAA 57.113 32.000 17.23 3.44 0.00 2.52
3118 3294 7.886629 AATTTGCTAGCTTTGATATCCAGAA 57.113 32.000 17.23 0.00 0.00 3.02
3119 3295 7.886629 AAATTTGCTAGCTTTGATATCCAGA 57.113 32.000 17.23 0.00 0.00 3.86
3157 3333 4.040339 TCCAGTGAGCTGATTGTTAGACAA 59.960 41.667 0.00 0.00 45.28 3.18
3158 3334 3.578282 TCCAGTGAGCTGATTGTTAGACA 59.422 43.478 0.00 0.00 45.28 3.41
3159 3335 4.193826 TCCAGTGAGCTGATTGTTAGAC 57.806 45.455 0.00 0.00 45.28 2.59
3160 3336 4.467438 TGATCCAGTGAGCTGATTGTTAGA 59.533 41.667 0.00 0.00 45.28 2.10
3161 3337 4.763073 TGATCCAGTGAGCTGATTGTTAG 58.237 43.478 0.00 0.00 45.28 2.34
3162 3338 4.824479 TGATCCAGTGAGCTGATTGTTA 57.176 40.909 0.00 0.00 45.28 2.41
3163 3339 3.708403 TGATCCAGTGAGCTGATTGTT 57.292 42.857 0.00 0.00 45.28 2.83
3164 3340 3.708403 TTGATCCAGTGAGCTGATTGT 57.292 42.857 0.00 0.00 45.28 2.71
3165 3341 5.366460 AGTATTGATCCAGTGAGCTGATTG 58.634 41.667 0.00 0.00 45.28 2.67
3166 3342 5.627182 AGTATTGATCCAGTGAGCTGATT 57.373 39.130 0.00 0.00 45.28 2.57
3167 3343 5.279406 GCTAGTATTGATCCAGTGAGCTGAT 60.279 44.000 0.00 0.00 45.28 2.90
3168 3344 4.038522 GCTAGTATTGATCCAGTGAGCTGA 59.961 45.833 0.00 0.00 45.28 4.26
3169 3345 4.305769 GCTAGTATTGATCCAGTGAGCTG 58.694 47.826 0.00 0.00 42.22 4.24
3170 3346 3.323403 GGCTAGTATTGATCCAGTGAGCT 59.677 47.826 0.00 0.00 0.00 4.09
3171 3347 3.323403 AGGCTAGTATTGATCCAGTGAGC 59.677 47.826 0.00 0.00 0.00 4.26
3172 3348 4.262377 CCAGGCTAGTATTGATCCAGTGAG 60.262 50.000 0.00 0.00 0.00 3.51
3173 3349 3.643320 CCAGGCTAGTATTGATCCAGTGA 59.357 47.826 0.00 0.00 0.00 3.41
3174 3350 3.643320 TCCAGGCTAGTATTGATCCAGTG 59.357 47.826 0.00 0.00 0.00 3.66
3175 3351 3.928754 TCCAGGCTAGTATTGATCCAGT 58.071 45.455 0.00 0.00 0.00 4.00
3176 3352 4.529769 TGATCCAGGCTAGTATTGATCCAG 59.470 45.833 10.11 0.00 0.00 3.86
3177 3353 4.492646 TGATCCAGGCTAGTATTGATCCA 58.507 43.478 10.11 0.00 0.00 3.41
3178 3354 5.489792 TTGATCCAGGCTAGTATTGATCC 57.510 43.478 10.11 0.00 0.00 3.36
3179 3355 5.411053 GCTTTGATCCAGGCTAGTATTGATC 59.589 44.000 0.00 0.09 0.00 2.92
3180 3356 5.072872 AGCTTTGATCCAGGCTAGTATTGAT 59.927 40.000 1.12 0.00 32.94 2.57
3181 3357 4.410228 AGCTTTGATCCAGGCTAGTATTGA 59.590 41.667 1.12 0.00 32.94 2.57
3182 3358 4.712476 AGCTTTGATCCAGGCTAGTATTG 58.288 43.478 1.12 0.00 32.94 1.90
3183 3359 4.657969 AGAGCTTTGATCCAGGCTAGTATT 59.342 41.667 3.20 0.00 35.01 1.89
3184 3360 4.230455 AGAGCTTTGATCCAGGCTAGTAT 58.770 43.478 3.20 0.00 35.01 2.12
3185 3361 3.647636 AGAGCTTTGATCCAGGCTAGTA 58.352 45.455 3.20 0.00 35.01 1.82
3186 3362 2.476199 AGAGCTTTGATCCAGGCTAGT 58.524 47.619 3.20 0.00 35.01 2.57
3187 3363 4.630111 CTTAGAGCTTTGATCCAGGCTAG 58.370 47.826 3.20 0.00 35.01 3.42
3188 3364 3.181461 GCTTAGAGCTTTGATCCAGGCTA 60.181 47.826 3.20 0.00 38.45 3.93
3189 3365 2.421248 GCTTAGAGCTTTGATCCAGGCT 60.421 50.000 2.80 2.80 38.45 4.58
3190 3366 1.946081 GCTTAGAGCTTTGATCCAGGC 59.054 52.381 0.00 0.00 38.45 4.85
3202 3378 3.316868 AGATGGAAGACGTAGCTTAGAGC 59.683 47.826 0.00 0.00 42.84 4.09
3203 3379 5.508200 AAGATGGAAGACGTAGCTTAGAG 57.492 43.478 0.00 0.00 0.00 2.43
3204 3380 6.376299 TGTTAAGATGGAAGACGTAGCTTAGA 59.624 38.462 0.00 0.00 0.00 2.10
3205 3381 6.561614 TGTTAAGATGGAAGACGTAGCTTAG 58.438 40.000 0.00 0.00 0.00 2.18
3206 3382 6.519679 TGTTAAGATGGAAGACGTAGCTTA 57.480 37.500 0.00 0.00 0.00 3.09
3207 3383 5.401531 TGTTAAGATGGAAGACGTAGCTT 57.598 39.130 0.00 0.00 0.00 3.74
3208 3384 5.169295 GTTGTTAAGATGGAAGACGTAGCT 58.831 41.667 0.00 0.00 0.00 3.32
3209 3385 4.927425 TGTTGTTAAGATGGAAGACGTAGC 59.073 41.667 0.00 0.00 0.00 3.58
3210 3386 5.062308 GCTGTTGTTAAGATGGAAGACGTAG 59.938 44.000 0.00 0.00 0.00 3.51
3211 3387 4.927425 GCTGTTGTTAAGATGGAAGACGTA 59.073 41.667 0.00 0.00 0.00 3.57
3212 3388 3.746492 GCTGTTGTTAAGATGGAAGACGT 59.254 43.478 0.00 0.00 0.00 4.34
3213 3389 3.125316 GGCTGTTGTTAAGATGGAAGACG 59.875 47.826 0.00 0.00 0.00 4.18
3214 3390 4.327680 AGGCTGTTGTTAAGATGGAAGAC 58.672 43.478 0.00 0.00 0.00 3.01
3215 3391 4.041567 TGAGGCTGTTGTTAAGATGGAAGA 59.958 41.667 0.00 0.00 0.00 2.87
3216 3392 4.326826 TGAGGCTGTTGTTAAGATGGAAG 58.673 43.478 0.00 0.00 0.00 3.46
3217 3393 4.365514 TGAGGCTGTTGTTAAGATGGAA 57.634 40.909 0.00 0.00 0.00 3.53
3218 3394 4.326826 CTTGAGGCTGTTGTTAAGATGGA 58.673 43.478 0.00 0.00 0.00 3.41
3219 3395 3.441572 CCTTGAGGCTGTTGTTAAGATGG 59.558 47.826 0.00 0.00 0.00 3.51
3220 3396 3.441572 CCCTTGAGGCTGTTGTTAAGATG 59.558 47.826 0.00 0.00 0.00 2.90
3221 3397 3.562176 CCCCTTGAGGCTGTTGTTAAGAT 60.562 47.826 0.00 0.00 0.00 2.40
3222 3398 2.224769 CCCCTTGAGGCTGTTGTTAAGA 60.225 50.000 0.00 0.00 0.00 2.10
3223 3399 2.162681 CCCCTTGAGGCTGTTGTTAAG 58.837 52.381 0.00 0.00 0.00 1.85
3224 3400 1.777878 TCCCCTTGAGGCTGTTGTTAA 59.222 47.619 0.00 0.00 0.00 2.01
3225 3401 1.440618 TCCCCTTGAGGCTGTTGTTA 58.559 50.000 0.00 0.00 0.00 2.41
3226 3402 0.555769 TTCCCCTTGAGGCTGTTGTT 59.444 50.000 0.00 0.00 0.00 2.83
3227 3403 0.555769 TTTCCCCTTGAGGCTGTTGT 59.444 50.000 0.00 0.00 0.00 3.32
3228 3404 1.928868 ATTTCCCCTTGAGGCTGTTG 58.071 50.000 0.00 0.00 0.00 3.33
3229 3405 2.529632 GAATTTCCCCTTGAGGCTGTT 58.470 47.619 0.00 0.00 0.00 3.16
3230 3406 1.272704 GGAATTTCCCCTTGAGGCTGT 60.273 52.381 3.89 0.00 0.00 4.40
3231 3407 1.272648 TGGAATTTCCCCTTGAGGCTG 60.273 52.381 12.90 0.00 35.03 4.85
3232 3408 1.084018 TGGAATTTCCCCTTGAGGCT 58.916 50.000 12.90 0.00 35.03 4.58
3233 3409 1.550524 GTTGGAATTTCCCCTTGAGGC 59.449 52.381 12.90 0.00 35.03 4.70
3234 3410 2.827921 CTGTTGGAATTTCCCCTTGAGG 59.172 50.000 12.90 0.00 35.03 3.86
3235 3411 2.232208 GCTGTTGGAATTTCCCCTTGAG 59.768 50.000 12.90 3.45 35.03 3.02
3236 3412 2.247358 GCTGTTGGAATTTCCCCTTGA 58.753 47.619 12.90 0.00 35.03 3.02
3237 3413 1.969923 TGCTGTTGGAATTTCCCCTTG 59.030 47.619 12.90 2.72 35.03 3.61
3238 3414 2.397044 TGCTGTTGGAATTTCCCCTT 57.603 45.000 12.90 0.00 35.03 3.95
3239 3415 2.460669 GATGCTGTTGGAATTTCCCCT 58.539 47.619 12.90 0.00 35.03 4.79
3240 3416 1.134946 CGATGCTGTTGGAATTTCCCC 59.865 52.381 12.90 4.34 35.03 4.81
3241 3417 2.091541 TCGATGCTGTTGGAATTTCCC 58.908 47.619 12.90 0.00 35.03 3.97
3242 3418 2.476185 CGTCGATGCTGTTGGAATTTCC 60.476 50.000 8.59 8.59 36.96 3.13
3243 3419 2.476185 CCGTCGATGCTGTTGGAATTTC 60.476 50.000 0.00 0.00 0.00 2.17
3244 3420 1.468520 CCGTCGATGCTGTTGGAATTT 59.531 47.619 0.00 0.00 0.00 1.82
3245 3421 1.086696 CCGTCGATGCTGTTGGAATT 58.913 50.000 0.00 0.00 0.00 2.17
3246 3422 0.249120 TCCGTCGATGCTGTTGGAAT 59.751 50.000 0.00 0.00 0.00 3.01
3247 3423 0.249120 ATCCGTCGATGCTGTTGGAA 59.751 50.000 0.00 0.00 0.00 3.53
3248 3424 1.107945 TATCCGTCGATGCTGTTGGA 58.892 50.000 0.00 0.00 0.00 3.53
3249 3425 1.794701 CATATCCGTCGATGCTGTTGG 59.205 52.381 0.00 0.00 0.00 3.77
3250 3426 1.193203 GCATATCCGTCGATGCTGTTG 59.807 52.381 9.46 0.00 44.15 3.33
3251 3427 1.502231 GCATATCCGTCGATGCTGTT 58.498 50.000 9.46 0.00 44.15 3.16
3252 3428 0.319900 GGCATATCCGTCGATGCTGT 60.320 55.000 14.69 0.00 46.27 4.40
3253 3429 0.319813 TGGCATATCCGTCGATGCTG 60.320 55.000 14.69 0.00 46.27 4.41
3254 3430 0.392706 TTGGCATATCCGTCGATGCT 59.607 50.000 14.69 0.00 46.27 3.79
3255 3431 0.512952 GTTGGCATATCCGTCGATGC 59.487 55.000 8.47 8.47 46.31 3.91
3256 3432 2.061773 GAGTTGGCATATCCGTCGATG 58.938 52.381 0.00 0.00 37.80 3.84
3257 3433 1.686587 TGAGTTGGCATATCCGTCGAT 59.313 47.619 0.00 0.00 37.80 3.59
3258 3434 1.107945 TGAGTTGGCATATCCGTCGA 58.892 50.000 0.00 0.00 37.80 4.20
3259 3435 1.934589 TTGAGTTGGCATATCCGTCG 58.065 50.000 0.00 0.00 37.80 5.12
3260 3436 3.689649 ACTTTTGAGTTGGCATATCCGTC 59.310 43.478 0.00 0.00 37.80 4.79
3261 3437 3.686016 ACTTTTGAGTTGGCATATCCGT 58.314 40.909 0.00 0.00 37.80 4.69
3262 3438 4.278678 GACTTTTGAGTTGGCATATCCG 57.721 45.455 0.00 0.00 37.80 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.