Multiple sequence alignment - TraesCS6A01G125500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G125500 chr6A 100.000 5519 0 0 1 5519 98983533 98978015 0.000000e+00 10192.0
1 TraesCS6A01G125500 chr6A 88.637 4550 445 27 696 5222 99016653 99012153 0.000000e+00 5472.0
2 TraesCS6A01G125500 chr6A 83.414 4540 621 66 768 5215 98888514 98884015 0.000000e+00 4091.0
3 TraesCS6A01G125500 chr6A 80.053 3800 639 81 1065 4788 98316058 98312302 0.000000e+00 2708.0
4 TraesCS6A01G125500 chr6A 80.591 3215 584 34 1144 4342 98309997 98306807 0.000000e+00 2444.0
5 TraesCS6A01G125500 chr6A 76.836 708 87 38 4617 5286 98913714 98913046 1.480000e-85 327.0
6 TraesCS6A01G125500 chr6A 80.665 331 27 15 273 599 99016981 99016684 7.200000e-54 222.0
7 TraesCS6A01G125500 chr6A 78.799 283 42 11 4880 5154 98312225 98311953 2.040000e-39 174.0
8 TraesCS6A01G125500 chr6A 88.506 87 8 2 4402 4487 98913942 98913857 2.720000e-18 104.0
9 TraesCS6A01G125500 chr6D 89.543 3433 347 9 1037 4464 82220617 82217192 0.000000e+00 4340.0
10 TraesCS6A01G125500 chr6D 83.498 4248 592 59 1028 5215 82204115 82199917 0.000000e+00 3860.0
11 TraesCS6A01G125500 chr6D 81.830 3858 616 61 696 4492 82238121 82234288 0.000000e+00 3162.0
12 TraesCS6A01G125500 chr6D 80.934 3362 586 41 1065 4395 81926272 81922935 0.000000e+00 2606.0
13 TraesCS6A01G125500 chr6D 79.727 3665 645 64 697 4303 82139620 82135996 0.000000e+00 2562.0
14 TraesCS6A01G125500 chr6D 79.290 3718 678 58 690 4338 81935900 81932206 0.000000e+00 2516.0
15 TraesCS6A01G125500 chr6D 81.048 3150 556 32 1216 4342 81773822 81770691 0.000000e+00 2471.0
16 TraesCS6A01G125500 chr6D 82.602 2437 378 27 768 3171 83108956 83106533 0.000000e+00 2109.0
17 TraesCS6A01G125500 chr6D 79.914 2569 417 61 1996 4490 82208964 82206421 0.000000e+00 1794.0
18 TraesCS6A01G125500 chr6D 90.212 756 60 11 291 1043 82222271 82221527 0.000000e+00 974.0
19 TraesCS6A01G125500 chr6D 88.503 748 46 12 4490 5233 82217192 82216481 0.000000e+00 869.0
20 TraesCS6A01G125500 chr6D 89.121 239 21 4 1 239 82224264 82224031 5.410000e-75 292.0
21 TraesCS6A01G125500 chr6D 74.194 713 121 35 4541 5213 81917118 81916429 7.150000e-59 239.0
22 TraesCS6A01G125500 chr6D 78.947 380 41 15 261 638 82238461 82238119 7.200000e-54 222.0
23 TraesCS6A01G125500 chr6D 84.579 214 19 4 5314 5519 82216453 82216246 3.370000e-47 200.0
24 TraesCS6A01G125500 chr6D 86.154 130 13 3 4402 4526 81917515 81917386 9.640000e-28 135.0
25 TraesCS6A01G125500 chr6D 87.879 99 9 3 4405 4502 81770600 81770504 4.520000e-21 113.0
26 TraesCS6A01G125500 chr6B 83.864 3768 520 47 847 4545 157109720 157105972 0.000000e+00 3509.0
27 TraesCS6A01G125500 chr6B 81.776 4088 656 57 459 4492 157489989 157485937 0.000000e+00 3339.0
28 TraesCS6A01G125500 chr6B 80.964 3362 585 40 1065 4395 156654927 156651590 0.000000e+00 2612.0
29 TraesCS6A01G125500 chr6B 80.831 3224 572 37 1144 4342 156550970 156547768 0.000000e+00 2488.0
30 TraesCS6A01G125500 chr6B 80.560 643 97 15 4585 5215 157104006 157103380 2.330000e-128 470.0
31 TraesCS6A01G125500 chr6B 79.046 692 95 25 4617 5282 157485210 157484543 3.950000e-116 429.0
32 TraesCS6A01G125500 chr6B 83.924 423 44 15 64 471 157490744 157490331 3.120000e-102 383.0
33 TraesCS6A01G125500 chr6B 76.197 710 86 33 4617 5286 157127400 157126734 1.160000e-76 298.0
34 TraesCS6A01G125500 chr6B 78.824 170 24 11 1 164 157110653 157110490 2.720000e-18 104.0
35 TraesCS6A01G125500 chr7D 74.065 2487 549 57 744 3168 560999793 561002245 0.000000e+00 931.0
36 TraesCS6A01G125500 chr7A 73.883 2305 526 48 939 3185 645087604 645089890 0.000000e+00 852.0
37 TraesCS6A01G125500 chr7B 73.924 2278 522 45 947 3168 608900036 608902297 0.000000e+00 850.0
38 TraesCS6A01G125500 chr5D 82.143 84 13 2 903 986 372060534 372060453 2.760000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G125500 chr6A 98978015 98983533 5518 True 10192.000000 10192 100.000000 1 5519 1 chr6A.!!$R2 5518
1 TraesCS6A01G125500 chr6A 98884015 98888514 4499 True 4091.000000 4091 83.414000 768 5215 1 chr6A.!!$R1 4447
2 TraesCS6A01G125500 chr6A 99012153 99016981 4828 True 2847.000000 5472 84.651000 273 5222 2 chr6A.!!$R5 4949
3 TraesCS6A01G125500 chr6A 98306807 98316058 9251 True 1775.333333 2708 79.814333 1065 5154 3 chr6A.!!$R3 4089
4 TraesCS6A01G125500 chr6A 98913046 98913942 896 True 215.500000 327 82.671000 4402 5286 2 chr6A.!!$R4 884
5 TraesCS6A01G125500 chr6D 82199917 82208964 9047 True 2827.000000 3860 81.706000 1028 5215 2 chr6D.!!$R7 4187
6 TraesCS6A01G125500 chr6D 81922935 81926272 3337 True 2606.000000 2606 80.934000 1065 4395 1 chr6D.!!$R1 3330
7 TraesCS6A01G125500 chr6D 82135996 82139620 3624 True 2562.000000 2562 79.727000 697 4303 1 chr6D.!!$R3 3606
8 TraesCS6A01G125500 chr6D 81932206 81935900 3694 True 2516.000000 2516 79.290000 690 4338 1 chr6D.!!$R2 3648
9 TraesCS6A01G125500 chr6D 83106533 83108956 2423 True 2109.000000 2109 82.602000 768 3171 1 chr6D.!!$R4 2403
10 TraesCS6A01G125500 chr6D 82234288 82238461 4173 True 1692.000000 3162 80.388500 261 4492 2 chr6D.!!$R9 4231
11 TraesCS6A01G125500 chr6D 82216246 82224264 8018 True 1335.000000 4340 88.391600 1 5519 5 chr6D.!!$R8 5518
12 TraesCS6A01G125500 chr6D 81770504 81773822 3318 True 1292.000000 2471 84.463500 1216 4502 2 chr6D.!!$R5 3286
13 TraesCS6A01G125500 chr6B 156651590 156654927 3337 True 2612.000000 2612 80.964000 1065 4395 1 chr6B.!!$R2 3330
14 TraesCS6A01G125500 chr6B 156547768 156550970 3202 True 2488.000000 2488 80.831000 1144 4342 1 chr6B.!!$R1 3198
15 TraesCS6A01G125500 chr6B 157484543 157490744 6201 True 1383.666667 3339 81.582000 64 5282 3 chr6B.!!$R5 5218
16 TraesCS6A01G125500 chr6B 157103380 157110653 7273 True 1361.000000 3509 81.082667 1 5215 3 chr6B.!!$R4 5214
17 TraesCS6A01G125500 chr6B 157126734 157127400 666 True 298.000000 298 76.197000 4617 5286 1 chr6B.!!$R3 669
18 TraesCS6A01G125500 chr7D 560999793 561002245 2452 False 931.000000 931 74.065000 744 3168 1 chr7D.!!$F1 2424
19 TraesCS6A01G125500 chr7A 645087604 645089890 2286 False 852.000000 852 73.883000 939 3185 1 chr7A.!!$F1 2246
20 TraesCS6A01G125500 chr7B 608900036 608902297 2261 False 850.000000 850 73.924000 947 3168 1 chr7B.!!$F1 2221

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 2117 0.168128 GGTCCACAATAGTGCGCAAC 59.832 55.0 14.00 6.79 44.53 4.17 F
1162 5924 0.035739 TTCCCGTGCTAGTTTCACCC 59.964 55.0 0.00 0.00 0.00 4.61 F
1256 6022 0.108472 CTCTTGTGCTGCTGATCGGA 60.108 55.0 5.48 0.00 0.00 4.55 F
2261 13023 0.179040 GGTGGAACAACTTCACCGGA 60.179 55.0 9.46 0.00 46.61 5.14 F
3563 14343 0.181114 ATGGCTCGAAGCTGGCAATA 59.819 50.0 2.06 0.00 41.99 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 12537 0.032403 GCACAGTGAGCAATGGCAAA 59.968 50.000 4.15 0.00 44.61 3.68 R
2182 12944 0.172352 GACCTTGTCGAGCTCTCCAG 59.828 60.000 12.85 6.09 0.00 3.86 R
3191 13959 0.107459 GGATCAGAGGTGGTGAAGCC 60.107 60.000 0.00 0.00 37.90 4.35 R
3568 14348 1.063174 GACACATTTCATCGCTGAGCC 59.937 52.381 0.00 0.00 31.68 4.70 R
4960 17833 0.321564 TGGGAAGTGTTCTGATGCCG 60.322 55.000 0.00 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 111 4.515567 CAGCTAACATCAGCACATCATCAT 59.484 41.667 0.00 0.00 44.35 2.45
166 201 7.747888 TGAAATGTGATTCTTATACAACACCG 58.252 34.615 0.00 0.00 0.00 4.94
219 260 3.940209 ACTAATACACGGTTCGGTTCA 57.060 42.857 0.00 0.00 0.00 3.18
224 265 2.027003 ACACGGTTCGGTTCAAAAGA 57.973 45.000 0.00 0.00 0.00 2.52
269 339 0.610232 ACAAGCATCAGAACCAGCCC 60.610 55.000 0.00 0.00 0.00 5.19
271 341 2.825836 GCATCAGAACCAGCCCGG 60.826 66.667 0.00 0.00 42.50 5.73
276 346 2.606519 AGAACCAGCCCGGCACTA 60.607 61.111 13.15 0.00 39.03 2.74
307 2056 4.214758 ACACACGCTACCCTGTTTATTTTC 59.785 41.667 0.00 0.00 0.00 2.29
363 2117 0.168128 GGTCCACAATAGTGCGCAAC 59.832 55.000 14.00 6.79 44.53 4.17
493 2615 0.773644 ACTCCAGCAGGTCAACCATT 59.226 50.000 1.33 0.00 38.89 3.16
517 2641 2.423538 CCCCGTCCATAAAGCAAGAAAG 59.576 50.000 0.00 0.00 0.00 2.62
518 2642 3.343617 CCCGTCCATAAAGCAAGAAAGA 58.656 45.455 0.00 0.00 0.00 2.52
519 2643 3.756434 CCCGTCCATAAAGCAAGAAAGAA 59.244 43.478 0.00 0.00 0.00 2.52
520 2644 4.217550 CCCGTCCATAAAGCAAGAAAGAAA 59.782 41.667 0.00 0.00 0.00 2.52
521 2645 5.105756 CCCGTCCATAAAGCAAGAAAGAAAT 60.106 40.000 0.00 0.00 0.00 2.17
524 2648 7.857885 CCGTCCATAAAGCAAGAAAGAAATATC 59.142 37.037 0.00 0.00 0.00 1.63
536 2660 7.301068 AGAAAGAAATATCGCACTTCTTCTG 57.699 36.000 0.90 0.00 38.21 3.02
624 2749 2.423577 GCGCCTTCCGGTAATAATCAT 58.576 47.619 0.00 0.00 37.44 2.45
629 2754 4.322198 GCCTTCCGGTAATAATCATCCGTA 60.322 45.833 0.00 0.00 41.17 4.02
658 2783 1.065102 CGATGGCTGAATTTCCTGCAG 59.935 52.381 6.78 6.78 33.40 4.41
675 2800 1.135859 GCAGATCTTCAGCAACCGTTG 60.136 52.381 6.91 6.91 0.00 4.10
677 2802 2.096069 CAGATCTTCAGCAACCGTTGTG 60.096 50.000 12.77 9.60 0.00 3.33
739 2865 8.054152 TGATGCATCAAGAAGCAATAGTTTAA 57.946 30.769 26.87 0.00 44.88 1.52
765 2892 1.974957 TGCTAGTGGTAAGCAGGTCAA 59.025 47.619 0.00 0.00 44.78 3.18
777 2905 6.016610 GGTAAGCAGGTCAAATTGTTTAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
853 3063 8.902040 AAAAATCATCGAGAATTAAGTCAAGC 57.098 30.769 5.62 0.00 0.00 4.01
938 3183 2.240667 AGTAGATTCCAGCATGCAACCT 59.759 45.455 21.98 4.24 31.97 3.50
1020 3287 2.952978 TGTGTAAAATCCAAGCGTGGTT 59.047 40.909 18.61 7.54 46.11 3.67
1022 3289 4.214545 TGTGTAAAATCCAAGCGTGGTTAG 59.785 41.667 18.61 0.00 46.11 2.34
1050 5789 2.387757 ACAAGGCACAGAACAAATGGT 58.612 42.857 0.00 0.00 0.00 3.55
1053 5792 3.788227 AGGCACAGAACAAATGGTAGA 57.212 42.857 0.00 0.00 0.00 2.59
1141 5900 2.838202 TCAGGGGACAACATAACCTCTC 59.162 50.000 0.00 0.00 31.47 3.20
1162 5924 0.035739 TTCCCGTGCTAGTTTCACCC 59.964 55.000 0.00 0.00 0.00 4.61
1212 5975 3.064545 CAGCAAGGCTTACAGCAAGATAC 59.935 47.826 10.23 0.00 44.75 2.24
1254 6020 1.017701 TGCTCTTGTGCTGCTGATCG 61.018 55.000 0.00 0.00 0.00 3.69
1256 6022 0.108472 CTCTTGTGCTGCTGATCGGA 60.108 55.000 5.48 0.00 0.00 4.55
1282 6048 1.480137 CTCTCCTACCAGTTCCTGCAG 59.520 57.143 6.78 6.78 0.00 4.41
1676 12438 4.576873 TCGAGCAATTTGTTTACAGGACAA 59.423 37.500 0.00 0.00 35.36 3.18
1710 12472 4.998672 CCACATGGCAAGTGATGAAAAATT 59.001 37.500 23.23 0.00 39.30 1.82
1775 12537 2.493278 GCCAAGTCATTTATGCACCAGT 59.507 45.455 0.00 0.00 0.00 4.00
1783 12545 4.020396 TCATTTATGCACCAGTTTGCCATT 60.020 37.500 0.00 0.00 42.25 3.16
1784 12546 3.316071 TTATGCACCAGTTTGCCATTG 57.684 42.857 0.00 0.00 42.25 2.82
1813 12575 3.877508 GTGCTTGAACTCTGTTACAACCT 59.122 43.478 0.00 0.00 0.00 3.50
1823 12585 5.542635 ACTCTGTTACAACCTATTCAGTGGA 59.457 40.000 0.00 0.00 0.00 4.02
1826 12588 6.269077 TCTGTTACAACCTATTCAGTGGAAGA 59.731 38.462 0.00 0.00 36.25 2.87
1851 12613 2.609737 CCGTCTGGACTTGGTAGTTGTC 60.610 54.545 0.00 0.00 37.49 3.18
1896 12658 0.958822 CCACAACAACCTTAGTGGGC 59.041 55.000 0.00 0.00 45.96 5.36
1901 12663 2.304761 CAACAACCTTAGTGGGCCTCTA 59.695 50.000 11.18 11.18 41.11 2.43
1916 12678 4.336280 GGCCTCTACCAGATGAACTTTTT 58.664 43.478 0.00 0.00 0.00 1.94
1924 12686 9.383519 TCTACCAGATGAACTTTTTAATGCTAG 57.616 33.333 0.00 0.00 0.00 3.42
1957 12719 4.846168 ACCTCTCTTTCCCCAAGAATAC 57.154 45.455 0.00 0.00 41.25 1.89
1994 12756 3.925379 TGAAGATGCACGTATTGTCAGT 58.075 40.909 0.00 0.00 0.00 3.41
2046 12808 5.048434 GGAGAGAACAATTTCAGTGGAAAGG 60.048 44.000 0.00 0.00 45.58 3.11
2048 12810 5.300286 AGAGAACAATTTCAGTGGAAAGGTG 59.700 40.000 0.00 0.00 45.58 4.00
2069 12831 3.969976 TGCCAGAATCTATAGGTCAGCTT 59.030 43.478 0.00 0.00 0.00 3.74
2070 12832 4.039730 TGCCAGAATCTATAGGTCAGCTTC 59.960 45.833 0.00 0.00 0.00 3.86
2072 12834 5.537188 CCAGAATCTATAGGTCAGCTTCAC 58.463 45.833 0.00 0.00 0.00 3.18
2113 12875 7.866898 CCATTTGAACAATAACAACATGTCTGA 59.133 33.333 0.00 0.00 0.00 3.27
2117 12879 6.942005 TGAACAATAACAACATGTCTGAGGAT 59.058 34.615 0.00 0.00 0.00 3.24
2120 12882 7.851228 ACAATAACAACATGTCTGAGGATCTA 58.149 34.615 0.00 0.00 34.92 1.98
2175 12937 4.170468 ACCATTGACCTCAAGAACAACT 57.830 40.909 0.00 0.00 39.47 3.16
2176 12938 4.536765 ACCATTGACCTCAAGAACAACTT 58.463 39.130 0.00 0.00 39.47 2.66
2194 12956 1.815613 CTTGTTCTCTGGAGAGCTCGA 59.184 52.381 8.37 0.00 41.80 4.04
2233 12995 8.575649 TCCAATCTACCCAATCTAAAAACTTC 57.424 34.615 0.00 0.00 0.00 3.01
2245 13007 7.693969 ATCTAAAAACTTCAGATCTTGGGTG 57.306 36.000 0.00 0.00 0.00 4.61
2261 13023 0.179040 GGTGGAACAACTTCACCGGA 60.179 55.000 9.46 0.00 46.61 5.14
2295 13057 1.593070 GCATCTATTCGTGCAGCAACG 60.593 52.381 0.00 3.65 44.92 4.10
2315 13077 2.202566 GTAACTGCACTTCGGCTATCC 58.797 52.381 0.00 0.00 34.04 2.59
2422 13184 9.431887 TCTTACAAATATCACAAGTACACTTCC 57.568 33.333 0.00 0.00 33.11 3.46
2431 13193 4.842139 CAAGTACACTTCCGATACTTGC 57.158 45.455 9.67 0.00 45.14 4.01
2432 13194 4.242475 CAAGTACACTTCCGATACTTGCA 58.758 43.478 9.67 0.00 45.14 4.08
2443 13205 3.806521 CCGATACTTGCAAGATCCAAGAG 59.193 47.826 32.50 15.26 41.64 2.85
2495 13257 2.408271 TGAATGAGACCATGCCAGAC 57.592 50.000 0.00 0.00 32.36 3.51
2545 13307 6.605471 TCTTCAGGTTCTAGCAATAACAGA 57.395 37.500 0.00 0.00 0.00 3.41
2565 13327 1.691196 TTGCTCACTGTTGGGGAAAG 58.309 50.000 0.00 0.00 28.98 2.62
2643 13405 8.109634 ACAATCAATTAACAGGACAGATACCTT 58.890 33.333 0.00 0.00 35.35 3.50
2727 13489 3.290710 GAAATCCCAGCAGCCTTAATGA 58.709 45.455 0.00 0.00 0.00 2.57
2941 13709 6.072838 TCACTCAATTTCAGCTTCAATGACTC 60.073 38.462 0.00 0.00 0.00 3.36
2944 13712 7.041635 TCAATTTCAGCTTCAATGACTCAAA 57.958 32.000 0.00 0.00 0.00 2.69
3191 13959 4.793071 TGCTAATTCACAAATGTGGTTCG 58.207 39.130 13.22 6.70 45.65 3.95
3215 13983 1.003573 ACCACCTCTGATCCCCTCC 59.996 63.158 0.00 0.00 0.00 4.30
3219 13987 1.211457 CACCTCTGATCCCCTCCAAAG 59.789 57.143 0.00 0.00 0.00 2.77
3224 13992 0.618458 TGATCCCCTCCAAAGAACGG 59.382 55.000 0.00 0.00 0.00 4.44
3334 14102 6.998074 TCAATCAGAGTCAATGGTTTTACAGT 59.002 34.615 0.00 0.00 0.00 3.55
3363 14131 7.765695 AATACAACAGACAAGAACAATGGAT 57.234 32.000 0.00 0.00 0.00 3.41
3474 14254 6.060028 TCACTGACATTTTGAAAGCTACAC 57.940 37.500 0.00 0.00 0.00 2.90
3541 14321 7.038659 GGATTAGTATACAAGGCAGAGCTATG 58.961 42.308 3.34 3.34 0.00 2.23
3563 14343 0.181114 ATGGCTCGAAGCTGGCAATA 59.819 50.000 2.06 0.00 41.99 1.90
3568 14348 3.174375 GCTCGAAGCTGGCAATAAAAAG 58.826 45.455 0.00 0.00 38.45 2.27
3574 14354 2.494870 AGCTGGCAATAAAAAGGCTCAG 59.505 45.455 0.00 0.00 0.00 3.35
3677 14457 0.998928 TGTGGGGTTACTGCATCCAT 59.001 50.000 0.00 0.00 0.00 3.41
3953 14733 1.904287 TGATCCTTCCCAACCAAACG 58.096 50.000 0.00 0.00 0.00 3.60
4133 14913 0.251341 AACTTGTCCCATGGGTGCTC 60.251 55.000 30.28 18.28 36.47 4.26
4188 14968 1.207089 TGGATCCAACACTTAGAGGCG 59.793 52.381 13.46 0.00 0.00 5.52
4192 14972 0.037326 CCAACACTTAGAGGCGCAGA 60.037 55.000 10.83 0.00 0.00 4.26
4202 14982 3.827008 AGAGGCGCAGAATATGAAGAA 57.173 42.857 10.83 0.00 0.00 2.52
4339 15123 2.938451 TGCAAAGATCAGCCAAGATACG 59.062 45.455 0.00 0.00 0.00 3.06
4349 15152 8.412456 AGATCAGCCAAGATACGATAATAGATG 58.588 37.037 0.00 0.00 0.00 2.90
4350 15153 7.468141 TCAGCCAAGATACGATAATAGATGT 57.532 36.000 0.00 0.00 0.00 3.06
4351 15154 7.539436 TCAGCCAAGATACGATAATAGATGTC 58.461 38.462 0.00 0.00 0.00 3.06
4352 15155 7.394641 TCAGCCAAGATACGATAATAGATGTCT 59.605 37.037 0.00 0.00 0.00 3.41
4355 15158 7.626664 GCCAAGATACGATAATAGATGTCTCGT 60.627 40.741 0.00 0.00 44.04 4.18
4400 15408 9.052759 ACATGTAACTTTCTTAGTTTCGTCAAT 57.947 29.630 0.00 0.00 44.73 2.57
4465 15497 6.385649 TTTTGAGCTTTCGTGGTTCTTTAT 57.614 33.333 0.00 0.00 0.00 1.40
4579 16598 5.237127 TCACAAGCATGAAACAGAGTGTAAG 59.763 40.000 0.00 0.00 0.00 2.34
4615 17407 5.106157 ACAATCTTGCTTTATCGGTGAAAGG 60.106 40.000 6.71 0.00 34.97 3.11
4677 17477 6.395629 CAGTCATCTTTTTGCTTTGGATCAT 58.604 36.000 0.00 0.00 0.00 2.45
4737 17552 5.435557 CGAATTACTAGCTACAGCAAATGC 58.564 41.667 3.70 0.00 45.16 3.56
4738 17553 5.559035 CGAATTACTAGCTACAGCAAATGCC 60.559 44.000 3.70 0.00 45.16 4.40
4778 17593 6.308766 GTCGAACAAATGGAATGAGAAAATGG 59.691 38.462 0.00 0.00 0.00 3.16
5040 17928 0.942410 TCGCGGTCCAAGAAAAGACG 60.942 55.000 6.13 0.00 33.66 4.18
5132 18020 2.285220 CCGGTATTGCGTCAGAGAAATG 59.715 50.000 0.00 0.00 0.00 2.32
5136 18030 4.212214 GGTATTGCGTCAGAGAAATGGATC 59.788 45.833 0.00 0.00 0.00 3.36
5146 18040 4.569180 AATGGATCCCAGGGCGCG 62.569 66.667 9.90 0.00 36.75 6.86
5155 18049 2.591429 CAGGGCGCGCATGGAATA 60.591 61.111 34.42 0.00 0.00 1.75
5156 18050 2.281070 AGGGCGCGCATGGAATAG 60.281 61.111 34.42 0.00 0.00 1.73
5157 18051 3.357079 GGGCGCGCATGGAATAGG 61.357 66.667 34.42 0.00 0.00 2.57
5158 18052 3.357079 GGCGCGCATGGAATAGGG 61.357 66.667 34.42 0.00 0.00 3.53
5159 18053 4.030452 GCGCGCATGGAATAGGGC 62.030 66.667 29.10 0.00 39.94 5.19
5244 18154 1.154035 CCGGCGAAAATGGTTGAGC 60.154 57.895 9.30 0.00 0.00 4.26
5247 18157 0.598065 GGCGAAAATGGTTGAGCTGT 59.402 50.000 0.00 0.00 0.00 4.40
5289 18200 2.049618 GGCGATAGAGCTGCCGAG 60.050 66.667 0.00 0.00 39.30 4.63
5290 18201 2.732843 GCGATAGAGCTGCCGAGC 60.733 66.667 0.00 0.00 46.64 5.03
5298 18209 3.793144 GCTGCCGAGCGGTCAAAG 61.793 66.667 15.89 9.37 37.24 2.77
5299 18210 3.793144 CTGCCGAGCGGTCAAAGC 61.793 66.667 15.89 14.09 37.65 3.51
5300 18211 4.617520 TGCCGAGCGGTCAAAGCA 62.618 61.111 15.89 16.50 37.65 3.91
5301 18212 3.793144 GCCGAGCGGTCAAAGCAG 61.793 66.667 15.89 0.00 37.65 4.24
5302 18213 3.121030 CCGAGCGGTCAAAGCAGG 61.121 66.667 15.89 2.36 37.01 4.85
5303 18214 2.048222 CGAGCGGTCAAAGCAGGA 60.048 61.111 15.89 0.00 37.01 3.86
5304 18215 2.097038 CGAGCGGTCAAAGCAGGAG 61.097 63.158 15.89 0.00 37.01 3.69
5305 18216 1.743252 GAGCGGTCAAAGCAGGAGG 60.743 63.158 10.30 0.00 37.01 4.30
5306 18217 2.747855 GCGGTCAAAGCAGGAGGG 60.748 66.667 0.00 0.00 34.19 4.30
5307 18218 2.747855 CGGTCAAAGCAGGAGGGC 60.748 66.667 0.00 0.00 0.00 5.19
5308 18219 2.361737 GGTCAAAGCAGGAGGGCC 60.362 66.667 0.00 0.00 0.00 5.80
5309 18220 2.361737 GTCAAAGCAGGAGGGCCC 60.362 66.667 16.46 16.46 33.31 5.80
5344 18255 3.414700 GTGCGCTTGGTCAGTCCG 61.415 66.667 9.73 0.00 39.52 4.79
5345 18256 3.923864 TGCGCTTGGTCAGTCCGT 61.924 61.111 9.73 0.00 39.52 4.69
5346 18257 3.112709 GCGCTTGGTCAGTCCGTC 61.113 66.667 0.00 0.00 39.52 4.79
5347 18258 2.432628 CGCTTGGTCAGTCCGTCC 60.433 66.667 0.00 0.00 39.52 4.79
5354 18265 3.515286 TCAGTCCGTCCGATCGCC 61.515 66.667 10.32 0.86 0.00 5.54
5359 18270 4.933064 CCGTCCGATCGCCAGCTC 62.933 72.222 10.32 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 143 9.288124 TGTATAAGAATCACATTTCATTTTGCG 57.712 29.630 0.00 0.00 0.00 4.85
141 150 7.604545 TCGGTGTTGTATAAGAATCACATTTCA 59.395 33.333 0.00 0.00 0.00 2.69
219 260 4.223923 TGGTTGTGTGGAAATGGTTCTTTT 59.776 37.500 0.00 0.00 33.92 2.27
224 265 2.461695 TGTGGTTGTGTGGAAATGGTT 58.538 42.857 0.00 0.00 0.00 3.67
230 271 1.102154 CAGCTTGTGGTTGTGTGGAA 58.898 50.000 0.00 0.00 0.00 3.53
269 339 1.738099 GTGTGCTCTGGTAGTGCCG 60.738 63.158 0.00 0.00 41.21 5.69
271 341 1.284982 CGTGTGTGCTCTGGTAGTGC 61.285 60.000 0.00 0.00 35.45 4.40
276 346 1.006102 GTAGCGTGTGTGCTCTGGT 60.006 57.895 0.00 0.00 45.87 4.00
307 2056 3.191162 TCATCTGAATTTGGAAGCGGTTG 59.809 43.478 3.70 0.00 0.00 3.77
363 2117 0.914644 TTCCATTCTCCTGGCTCCAG 59.085 55.000 8.93 8.93 43.26 3.86
423 2178 4.752101 CCTGAGGCATTAACTTCCTTATCG 59.248 45.833 0.00 0.00 0.00 2.92
493 2615 0.693622 TTGCTTTATGGACGGGGTGA 59.306 50.000 0.00 0.00 0.00 4.02
517 2641 3.002759 GGCCAGAAGAAGTGCGATATTTC 59.997 47.826 0.00 0.00 0.00 2.17
518 2642 2.945668 GGCCAGAAGAAGTGCGATATTT 59.054 45.455 0.00 0.00 0.00 1.40
519 2643 2.565841 GGCCAGAAGAAGTGCGATATT 58.434 47.619 0.00 0.00 0.00 1.28
520 2644 1.202698 GGGCCAGAAGAAGTGCGATAT 60.203 52.381 4.39 0.00 0.00 1.63
521 2645 0.178068 GGGCCAGAAGAAGTGCGATA 59.822 55.000 4.39 0.00 0.00 2.92
524 2648 1.743252 GAGGGCCAGAAGAAGTGCG 60.743 63.158 6.18 0.00 0.00 5.34
624 2749 3.939592 CAGCCATCGAGATAGTATACGGA 59.060 47.826 0.00 0.00 0.00 4.69
629 2754 6.212388 AGGAAATTCAGCCATCGAGATAGTAT 59.788 38.462 0.00 0.00 0.00 2.12
641 2766 2.025605 AGATCTGCAGGAAATTCAGCCA 60.026 45.455 15.13 0.00 0.00 4.75
658 2783 1.197721 CCACAACGGTTGCTGAAGATC 59.802 52.381 20.20 0.00 0.00 2.75
729 2855 8.268850 ACCACTAGCACTGAATTAAACTATTG 57.731 34.615 0.00 0.00 0.00 1.90
739 2865 3.369892 CCTGCTTACCACTAGCACTGAAT 60.370 47.826 0.00 0.00 43.30 2.57
765 2892 7.719633 TCTCTAACTGGCTTTCACTAAACAATT 59.280 33.333 0.00 0.00 0.00 2.32
777 2905 5.221722 TGACATCACTTCTCTAACTGGCTTT 60.222 40.000 0.00 0.00 0.00 3.51
853 3063 7.615582 TTGCATTGTAGATTTTCTAGTCCTG 57.384 36.000 0.00 0.00 28.01 3.86
1020 3287 3.770046 TCTGTGCCTTGTAGTGGTACTA 58.230 45.455 0.00 0.00 40.19 1.82
1022 3289 3.064931 GTTCTGTGCCTTGTAGTGGTAC 58.935 50.000 0.00 0.00 39.99 3.34
1070 5811 4.885907 ACCATGAAAGAGCATGATGGTAAG 59.114 41.667 10.40 0.00 46.64 2.34
1162 5924 2.290367 TGAAGTGTCTGCATGGTTTTCG 59.710 45.455 0.00 0.00 0.00 3.46
1212 5975 1.755179 CCAAGGGAAGGTATGTGCAG 58.245 55.000 0.00 0.00 0.00 4.41
1254 6020 0.761802 CTGGTAGGAGAGGCCAATCC 59.238 60.000 16.60 16.60 40.02 3.01
1256 6022 1.840635 GAACTGGTAGGAGAGGCCAAT 59.159 52.381 5.01 0.00 40.02 3.16
1282 6048 3.082701 AGCCCTGCTCCTGCTCTC 61.083 66.667 0.00 0.00 40.48 3.20
1306 6072 4.660938 GCCCGGCAAGGAACTGGT 62.661 66.667 3.91 0.00 45.00 4.00
1676 12438 0.394352 GCCATGTGGAGGACGGAAAT 60.394 55.000 2.55 0.00 37.39 2.17
1733 12495 0.523519 GCTGCCCAGTAAAGCTGTTC 59.476 55.000 0.00 0.00 43.55 3.18
1759 12521 3.253230 GGCAAACTGGTGCATAAATGAC 58.747 45.455 7.71 0.00 46.81 3.06
1775 12537 0.032403 GCACAGTGAGCAATGGCAAA 59.968 50.000 4.15 0.00 44.61 3.68
1783 12545 1.139654 AGAGTTCAAGCACAGTGAGCA 59.860 47.619 15.15 0.00 0.00 4.26
1784 12546 1.530293 CAGAGTTCAAGCACAGTGAGC 59.470 52.381 4.15 4.14 0.00 4.26
1823 12585 2.372172 ACCAAGTCCAGACGGAATTCTT 59.628 45.455 5.23 0.00 46.53 2.52
1851 12613 0.035881 TTGAGCACTCTGAGCTTGGG 59.964 55.000 4.19 0.00 43.58 4.12
1889 12651 1.573857 TCATCTGGTAGAGGCCCACTA 59.426 52.381 0.00 0.25 0.00 2.74
1896 12658 7.337942 AGCATTAAAAAGTTCATCTGGTAGAGG 59.662 37.037 0.00 0.00 0.00 3.69
1901 12663 6.660949 AGCTAGCATTAAAAAGTTCATCTGGT 59.339 34.615 18.83 0.00 0.00 4.00
1916 12678 3.067742 GGTACTCCAACGAGCTAGCATTA 59.932 47.826 18.83 0.00 40.03 1.90
1994 12756 7.786943 AGATCAAGGGTTATGAGATTACTGAGA 59.213 37.037 0.00 0.00 0.00 3.27
2046 12808 3.323403 AGCTGACCTATAGATTCTGGCAC 59.677 47.826 0.00 0.00 0.00 5.01
2048 12810 4.039730 TGAAGCTGACCTATAGATTCTGGC 59.960 45.833 0.00 6.55 40.29 4.85
2099 12861 5.719563 TGGTAGATCCTCAGACATGTTGTTA 59.280 40.000 0.00 0.00 37.07 2.41
2113 12875 3.312890 CTCAGGGTTGATGGTAGATCCT 58.687 50.000 0.00 0.00 37.07 3.24
2117 12879 1.951209 TGCTCAGGGTTGATGGTAGA 58.049 50.000 0.00 0.00 31.68 2.59
2120 12882 0.773644 AGTTGCTCAGGGTTGATGGT 59.226 50.000 0.00 0.00 31.68 3.55
2175 12937 1.542030 GTCGAGCTCTCCAGAGAACAA 59.458 52.381 12.85 0.00 44.74 2.83
2176 12938 1.169577 GTCGAGCTCTCCAGAGAACA 58.830 55.000 12.85 0.00 44.74 3.18
2177 12939 1.169577 TGTCGAGCTCTCCAGAGAAC 58.830 55.000 12.85 0.00 44.74 3.01
2181 12943 0.251386 ACCTTGTCGAGCTCTCCAGA 60.251 55.000 12.85 0.00 0.00 3.86
2182 12944 0.172352 GACCTTGTCGAGCTCTCCAG 59.828 60.000 12.85 6.09 0.00 3.86
2194 12956 4.713792 AGATTGGAGAAGTTGACCTTGT 57.286 40.909 0.00 0.00 32.03 3.16
2204 12966 8.678199 GTTTTTAGATTGGGTAGATTGGAGAAG 58.322 37.037 0.00 0.00 0.00 2.85
2233 12995 3.146104 AGTTGTTCCACCCAAGATCTG 57.854 47.619 0.00 0.00 0.00 2.90
2245 13007 3.786516 TTTTTCCGGTGAAGTTGTTCC 57.213 42.857 0.00 0.00 0.00 3.62
2261 13023 7.756722 CACGAATAGATGCTTTCTGGAATTTTT 59.243 33.333 0.00 0.00 35.79 1.94
2282 13044 0.579630 CAGTTACGTTGCTGCACGAA 59.420 50.000 23.94 14.18 43.15 3.85
2295 13057 2.159085 AGGATAGCCGAAGTGCAGTTAC 60.159 50.000 6.80 0.00 39.96 2.50
2315 13077 4.100498 AGCTGGCCATGGAAATTATTGAAG 59.900 41.667 18.40 0.00 0.00 3.02
2363 13125 5.222870 ACAAGTGATAGGAATGAGAGGGAT 58.777 41.667 0.00 0.00 0.00 3.85
2422 13184 4.437239 ACTCTTGGATCTTGCAAGTATCG 58.563 43.478 25.19 14.47 44.69 2.92
2431 13193 3.594134 GTGGTGAGACTCTTGGATCTTG 58.406 50.000 3.68 0.00 0.00 3.02
2432 13194 2.569404 GGTGGTGAGACTCTTGGATCTT 59.431 50.000 3.68 0.00 0.00 2.40
2443 13205 3.610911 CCAATAAGAAGGGTGGTGAGAC 58.389 50.000 0.00 0.00 0.00 3.36
2511 13273 6.652900 GCTAGAACCTGAAGATTCTCAAAACT 59.347 38.462 0.00 0.00 36.56 2.66
2545 13307 2.242043 CTTTCCCCAACAGTGAGCAAT 58.758 47.619 0.00 0.00 0.00 3.56
2553 13315 2.649531 TGTGGTACTTTCCCCAACAG 57.350 50.000 0.00 0.00 31.17 3.16
2625 13387 6.258354 TCCAGTAAGGTATCTGTCCTGTTAA 58.742 40.000 0.00 0.00 39.02 2.01
2643 13405 5.885912 GGAATTTTAGGCTGTTGATCCAGTA 59.114 40.000 0.00 0.00 34.84 2.74
2715 13477 2.026641 TGGCATCTTCATTAAGGCTGC 58.973 47.619 0.00 0.00 39.27 5.25
2727 13489 5.045012 TCTGATCTTAGCATTGGCATCTT 57.955 39.130 0.00 0.00 44.61 2.40
2941 13709 4.081406 TGATTGTGGGATCTGTCCTTTTG 58.919 43.478 0.00 0.00 44.44 2.44
2944 13712 4.598036 ATTGATTGTGGGATCTGTCCTT 57.402 40.909 0.00 0.00 44.44 3.36
3191 13959 0.107459 GGATCAGAGGTGGTGAAGCC 60.107 60.000 0.00 0.00 37.90 4.35
3215 13983 2.749621 AGCCTTCTTATGCCGTTCTTTG 59.250 45.455 0.00 0.00 0.00 2.77
3219 13987 2.317530 AGAGCCTTCTTATGCCGTTC 57.682 50.000 0.00 0.00 0.00 3.95
3224 13992 4.178545 TGCAAAAAGAGCCTTCTTATGC 57.821 40.909 14.50 14.50 46.30 3.14
3346 14114 8.593492 TTCGATATATCCATTGTTCTTGTCTG 57.407 34.615 7.15 0.00 0.00 3.51
3363 14131 7.872993 GGAGTTGGATGAAGTTGATTCGATATA 59.127 37.037 0.00 0.00 41.14 0.86
3382 14150 2.260844 TTGCTCTGAACTGGAGTTGG 57.739 50.000 0.00 0.00 38.56 3.77
3474 14254 6.506147 TGATGTTCTCCTTGTCAAAATTGTG 58.494 36.000 0.00 0.00 0.00 3.33
3541 14321 2.467826 GCCAGCTTCGAGCCATCAC 61.468 63.158 3.66 0.00 43.77 3.06
3551 14331 3.056607 TGAGCCTTTTTATTGCCAGCTTC 60.057 43.478 0.00 0.00 0.00 3.86
3563 14343 3.256631 ACATTTCATCGCTGAGCCTTTTT 59.743 39.130 0.00 0.00 31.68 1.94
3568 14348 1.063174 GACACATTTCATCGCTGAGCC 59.937 52.381 0.00 0.00 31.68 4.70
3574 14354 5.484173 TTCCATAAGACACATTTCATCGC 57.516 39.130 0.00 0.00 0.00 4.58
3677 14457 1.434188 TGAGGAGCCTTGAGTTTCCA 58.566 50.000 0.00 0.00 32.02 3.53
3953 14733 3.363970 CGACCAACTCAGTTGTAACATGC 60.364 47.826 16.50 0.00 41.41 4.06
4001 14781 1.416243 CAACCCATGCTTGCCCATAT 58.584 50.000 0.00 0.00 0.00 1.78
4133 14913 1.195115 TTCCCTTGGACCTCATCTCG 58.805 55.000 0.00 0.00 0.00 4.04
4188 14968 6.558009 TCAGCATTTGTTCTTCATATTCTGC 58.442 36.000 0.00 0.00 32.47 4.26
4192 14972 7.318141 CACCTTCAGCATTTGTTCTTCATATT 58.682 34.615 0.00 0.00 0.00 1.28
4202 14982 2.309613 TCAAGCACCTTCAGCATTTGT 58.690 42.857 0.00 0.00 0.00 2.83
4397 15405 9.347934 TGTACAAAGTACAAAACAAACTCATTG 57.652 29.630 7.49 0.00 44.95 2.82
4400 15408 8.325421 TCTGTACAAAGTACAAAACAAACTCA 57.675 30.769 10.77 0.00 0.00 3.41
4487 15519 9.351570 CTTGCAAAAGAAATCTAAAGGAAGATC 57.648 33.333 0.00 0.00 35.10 2.75
4579 16598 4.491676 AGCAAGATTGTCATTTCACATGC 58.508 39.130 0.00 0.00 0.00 4.06
4640 17432 8.671921 CAAAAAGATGACTGCACATACTATCTT 58.328 33.333 0.00 0.00 35.57 2.40
4677 17477 7.716123 TCCAACTTTAGTGGTTTCTAAAATCGA 59.284 33.333 0.00 0.00 38.75 3.59
4778 17593 1.400494 GTGGTGGTCGTATTGCATTCC 59.600 52.381 0.00 0.00 0.00 3.01
4840 17683 3.056821 TGATCGACATTCCTCTCGTGTTT 60.057 43.478 0.00 0.00 0.00 2.83
4957 17830 1.608025 GGAAGTGTTCTGATGCCGTGA 60.608 52.381 0.00 0.00 0.00 4.35
4958 17831 0.798776 GGAAGTGTTCTGATGCCGTG 59.201 55.000 0.00 0.00 0.00 4.94
4959 17832 0.321653 GGGAAGTGTTCTGATGCCGT 60.322 55.000 0.00 0.00 0.00 5.68
4960 17833 0.321564 TGGGAAGTGTTCTGATGCCG 60.322 55.000 0.00 0.00 0.00 5.69
4961 17834 1.815003 CTTGGGAAGTGTTCTGATGCC 59.185 52.381 0.00 0.00 0.00 4.40
5103 17991 1.138671 CGCAATACCGGCCTTTTGG 59.861 57.895 0.00 0.00 44.18 3.28
5115 18003 4.380531 GGATCCATTTCTCTGACGCAATA 58.619 43.478 6.95 0.00 0.00 1.90
5146 18040 2.320587 CGCTCGCCCTATTCCATGC 61.321 63.158 0.00 0.00 0.00 4.06
5147 18041 1.069765 ACGCTCGCCCTATTCCATG 59.930 57.895 0.00 0.00 0.00 3.66
5148 18042 1.069765 CACGCTCGCCCTATTCCAT 59.930 57.895 0.00 0.00 0.00 3.41
5149 18043 2.499205 CACGCTCGCCCTATTCCA 59.501 61.111 0.00 0.00 0.00 3.53
5150 18044 2.280186 CCACGCTCGCCCTATTCC 60.280 66.667 0.00 0.00 0.00 3.01
5151 18045 0.876342 CTTCCACGCTCGCCCTATTC 60.876 60.000 0.00 0.00 0.00 1.75
5152 18046 1.144057 CTTCCACGCTCGCCCTATT 59.856 57.895 0.00 0.00 0.00 1.73
5153 18047 2.815308 CTTCCACGCTCGCCCTAT 59.185 61.111 0.00 0.00 0.00 2.57
5154 18048 4.143333 GCTTCCACGCTCGCCCTA 62.143 66.667 0.00 0.00 0.00 3.53
5160 18054 3.991536 GACCCTCGCTTCCACGCTC 62.992 68.421 0.00 0.00 0.00 5.03
5161 18055 4.070552 GACCCTCGCTTCCACGCT 62.071 66.667 0.00 0.00 0.00 5.07
5233 18143 2.146342 CGAGTCACAGCTCAACCATTT 58.854 47.619 0.00 0.00 35.33 2.32
5244 18154 4.803426 GCTCCCGGCGAGTCACAG 62.803 72.222 9.30 0.00 41.10 3.66
5263 18174 1.872197 GCTCTATCGCCATCGCTCCT 61.872 60.000 0.00 0.00 35.26 3.69
5289 18200 2.747855 CCCTCCTGCTTTGACCGC 60.748 66.667 0.00 0.00 0.00 5.68
5290 18201 2.747855 GCCCTCCTGCTTTGACCG 60.748 66.667 0.00 0.00 0.00 4.79
5291 18202 2.361737 GGCCCTCCTGCTTTGACC 60.362 66.667 0.00 0.00 0.00 4.02
5292 18203 2.361737 GGGCCCTCCTGCTTTGAC 60.362 66.667 17.04 0.00 0.00 3.18
5293 18204 2.532715 AGGGCCCTCCTGCTTTGA 60.533 61.111 22.28 0.00 46.07 2.69
5301 18212 1.482593 CGATACATATCAGGGCCCTCC 59.517 57.143 25.77 0.00 32.98 4.30
5302 18213 1.134670 GCGATACATATCAGGGCCCTC 60.135 57.143 25.77 6.56 32.98 4.30
5303 18214 0.905357 GCGATACATATCAGGGCCCT 59.095 55.000 22.28 22.28 32.98 5.19
5304 18215 0.905357 AGCGATACATATCAGGGCCC 59.095 55.000 16.46 16.46 32.98 5.80
5305 18216 2.770164 AAGCGATACATATCAGGGCC 57.230 50.000 0.00 0.00 32.98 5.80
5306 18217 4.568359 CACATAAGCGATACATATCAGGGC 59.432 45.833 0.00 0.00 32.98 5.19
5307 18218 4.568359 GCACATAAGCGATACATATCAGGG 59.432 45.833 0.00 0.00 32.98 4.45
5308 18219 5.709011 GCACATAAGCGATACATATCAGG 57.291 43.478 0.00 0.00 32.98 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.