Multiple sequence alignment - TraesCS6A01G125400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G125400 chr6A 100.000 5924 0 0 932 6855 98918377 98912454 0.000000e+00 10903.0
1 TraesCS6A01G125400 chr6A 84.630 2674 368 34 2911 5568 98323025 98320379 0.000000e+00 2621.0
2 TraesCS6A01G125400 chr6A 84.921 2341 328 21 2905 5234 98255614 98253288 0.000000e+00 2344.0
3 TraesCS6A01G125400 chr6A 80.391 2402 419 39 2933 5315 99015329 99012961 0.000000e+00 1779.0
4 TraesCS6A01G125400 chr6A 85.806 782 110 1 2106 2887 98813659 98812879 0.000000e+00 828.0
5 TraesCS6A01G125400 chr6A 85.096 785 114 1 2106 2887 98323905 98323121 0.000000e+00 798.0
6 TraesCS6A01G125400 chr6A 93.431 274 11 5 952 1220 21623972 21624243 3.850000e-107 399.0
7 TraesCS6A01G125400 chr6A 100.000 191 0 0 1 191 98919308 98919118 3.040000e-93 353.0
8 TraesCS6A01G125400 chr6A 76.836 708 87 38 5595 6263 98978917 98978248 1.840000e-85 327.0
9 TraesCS6A01G125400 chr6A 79.212 457 47 28 5837 6270 99012522 99012091 2.440000e-69 274.0
10 TraesCS6A01G125400 chr6A 76.604 530 70 27 1416 1928 98888879 98888387 6.870000e-60 243.0
11 TraesCS6A01G125400 chr6A 93.103 116 8 0 73 188 21623028 21623143 3.290000e-38 171.0
12 TraesCS6A01G125400 chr6A 88.506 87 8 2 5367 5452 98979132 98979047 3.380000e-18 104.0
13 TraesCS6A01G125400 chr6A 100.000 31 0 0 5594 5624 98306366 98306336 2.670000e-04 58.4
14 TraesCS6A01G125400 chr6D 92.525 5137 275 41 1216 6290 82210670 82205581 0.000000e+00 7258.0
15 TraesCS6A01G125400 chr6D 85.062 2671 362 27 2911 5568 81934555 81931909 0.000000e+00 2687.0
16 TraesCS6A01G125400 chr6D 81.468 3475 468 89 2884 6270 82236857 82233471 0.000000e+00 2687.0
17 TraesCS6A01G125400 chr6D 85.182 2497 331 26 2884 5369 82138337 82135869 0.000000e+00 2525.0
18 TraesCS6A01G125400 chr6D 82.435 2579 418 27 2884 5453 81773070 81770518 0.000000e+00 2220.0
19 TraesCS6A01G125400 chr6D 86.573 782 105 0 2106 2887 82139187 82138406 0.000000e+00 863.0
20 TraesCS6A01G125400 chr6D 85.096 785 114 1 2106 2887 81935435 81934651 0.000000e+00 798.0
21 TraesCS6A01G125400 chr6D 77.951 576 75 32 5652 6210 82217020 82216480 5.160000e-81 313.0
22 TraesCS6A01G125400 chr6D 74.503 553 93 28 5642 6165 81922564 81922031 5.420000e-46 196.0
23 TraesCS6A01G125400 chr6D 82.558 172 10 13 1403 1564 82139863 82139702 4.310000e-27 134.0
24 TraesCS6A01G125400 chr6D 77.922 231 30 15 1416 1632 81926521 81926298 2.600000e-24 124.0
25 TraesCS6A01G125400 chr6D 82.677 127 20 2 6002 6127 81769786 81769661 2.020000e-20 111.0
26 TraesCS6A01G125400 chr6B 92.356 5102 290 38 1216 6268 157131779 157126729 0.000000e+00 7169.0
27 TraesCS6A01G125400 chr6B 84.955 2672 361 26 2911 5568 156740169 156737525 0.000000e+00 2669.0
28 TraesCS6A01G125400 chr6B 85.342 2497 334 24 2884 5369 157026612 157024137 0.000000e+00 2555.0
29 TraesCS6A01G125400 chr6B 82.437 2585 425 22 2884 5452 156550147 156547576 0.000000e+00 2231.0
30 TraesCS6A01G125400 chr6B 86.136 779 105 1 2109 2887 157027456 157026681 0.000000e+00 837.0
31 TraesCS6A01G125400 chr6B 84.635 794 118 3 2098 2887 157900253 157901046 0.000000e+00 787.0
32 TraesCS6A01G125400 chr6B 79.630 702 80 34 5591 6259 157485214 157484543 4.880000e-121 446.0
33 TraesCS6A01G125400 chr6B 95.045 222 11 0 6296 6517 48530983 48530762 3.930000e-92 350.0
34 TraesCS6A01G125400 chr6B 89.674 184 13 3 1216 1399 157146215 157146038 5.350000e-56 230.0
35 TraesCS6A01G125400 chr6B 79.130 230 28 12 1416 1632 156655175 156654953 2.580000e-29 141.0
36 TraesCS6A01G125400 chr6B 96.203 79 3 0 1470 1548 157133503 157133425 5.580000e-26 130.0
37 TraesCS6A01G125400 chr6B 82.278 158 11 9 1416 1564 157028124 157027975 3.360000e-23 121.0
38 TraesCS6A01G125400 chr6B 76.875 160 25 5 1779 1931 157766332 157766178 5.700000e-11 80.5
39 TraesCS6A01G125400 chr6B 90.000 60 6 0 1776 1835 39809841 39809782 2.050000e-10 78.7
40 TraesCS6A01G125400 chr5D 84.509 794 117 5 2098 2888 372064165 372063375 0.000000e+00 780.0
41 TraesCS6A01G125400 chr5D 93.243 222 11 2 6634 6855 45218832 45219049 2.380000e-84 324.0
42 TraesCS6A01G125400 chr5D 92.105 114 9 0 6510 6623 45218680 45218793 1.980000e-35 161.0
43 TraesCS6A01G125400 chr5D 100.000 29 0 0 1193 1221 534616998 534616970 3.000000e-03 54.7
44 TraesCS6A01G125400 chr2A 96.833 221 7 0 6294 6514 440097130 440097350 3.020000e-98 370.0
45 TraesCS6A01G125400 chr2A 93.304 224 15 0 6294 6517 21259031 21258808 1.430000e-86 331.0
46 TraesCS6A01G125400 chr2A 86.316 190 8 5 20 191 32243729 32243918 2.520000e-44 191.0
47 TraesCS6A01G125400 chr4A 95.909 220 9 0 6295 6514 522132773 522132992 2.350000e-94 357.0
48 TraesCS6A01G125400 chr4A 92.308 247 17 2 977 1223 625527071 625527315 3.930000e-92 350.0
49 TraesCS6A01G125400 chr4A 92.593 243 14 4 6274 6514 620392223 620392463 5.090000e-91 346.0
50 TraesCS6A01G125400 chr4A 89.437 142 14 1 51 191 625526025 625526166 1.960000e-40 178.0
51 TraesCS6A01G125400 chr4A 93.878 49 3 0 18 66 625525974 625526022 2.650000e-09 75.0
52 TraesCS6A01G125400 chr7A 95.392 217 10 0 6298 6514 130190846 130191062 5.090000e-91 346.0
53 TraesCS6A01G125400 chr7A 93.722 223 14 0 6295 6517 252946402 252946180 1.100000e-87 335.0
54 TraesCS6A01G125400 chr7A 89.474 114 10 2 6511 6623 34786353 34786241 7.170000e-30 143.0
55 TraesCS6A01G125400 chr7A 86.957 115 12 3 6511 6623 34767101 34766988 7.220000e-25 126.0
56 TraesCS6A01G125400 chr5A 94.595 222 10 1 6634 6855 402642399 402642618 6.580000e-90 342.0
57 TraesCS6A01G125400 chr5A 94.144 222 13 0 6296 6517 307714225 307714004 8.520000e-89 339.0
58 TraesCS6A01G125400 chr3A 91.803 244 17 3 6277 6517 110776056 110775813 3.060000e-88 337.0
59 TraesCS6A01G125400 chr3A 95.455 198 7 1 6658 6855 699307805 699307610 1.440000e-81 315.0
60 TraesCS6A01G125400 chr3A 90.351 114 10 1 6511 6623 699308191 699308078 1.540000e-31 148.0
61 TraesCS6A01G125400 chr3A 100.000 29 0 0 1193 1221 696705065 696705093 3.000000e-03 54.7
62 TraesCS6A01G125400 chr1A 92.511 227 12 2 6634 6855 32875609 32875835 3.080000e-83 320.0
63 TraesCS6A01G125400 chr1A 87.500 272 26 5 932 1203 224823542 224823805 2.400000e-79 307.0
64 TraesCS6A01G125400 chr1A 89.437 142 14 1 51 191 224822760 224822901 1.960000e-40 178.0
65 TraesCS6A01G125400 chr1A 92.105 114 8 1 6511 6623 32875442 32875555 7.120000e-35 159.0
66 TraesCS6A01G125400 chr4D 92.342 222 13 3 6634 6855 490639645 490639428 5.160000e-81 313.0
67 TraesCS6A01G125400 chr4D 100.000 30 0 0 1191 1220 502380006 502379977 1.000000e-03 56.5
68 TraesCS6A01G125400 chr7B 85.390 308 21 9 932 1216 10234077 10233771 1.450000e-76 298.0
69 TraesCS6A01G125400 chr1B 85.965 285 31 6 932 1216 341141737 341141462 5.200000e-76 296.0
70 TraesCS6A01G125400 chr1B 90.083 121 11 1 63 182 341142420 341142300 9.210000e-34 156.0
71 TraesCS6A01G125400 chr1B 100.000 28 0 0 1192 1219 146118789 146118816 1.200000e-02 52.8
72 TraesCS6A01G125400 chr2B 96.774 31 1 0 1193 1223 442534952 442534982 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G125400 chr6A 98912454 98919308 6854 True 5628.0 10903 100.000000 1 6855 2 chr6A.!!$R6 6854
1 TraesCS6A01G125400 chr6A 98253288 98255614 2326 True 2344.0 2344 84.921000 2905 5234 1 chr6A.!!$R1 2329
2 TraesCS6A01G125400 chr6A 98320379 98323905 3526 True 1709.5 2621 84.863000 2106 5568 2 chr6A.!!$R5 3462
3 TraesCS6A01G125400 chr6A 99012091 99015329 3238 True 1026.5 1779 79.801500 2933 6270 2 chr6A.!!$R8 3337
4 TraesCS6A01G125400 chr6A 98812879 98813659 780 True 828.0 828 85.806000 2106 2887 1 chr6A.!!$R3 781
5 TraesCS6A01G125400 chr6A 21623028 21624243 1215 False 285.0 399 93.267000 73 1220 2 chr6A.!!$F1 1147
6 TraesCS6A01G125400 chr6A 98978248 98979132 884 True 215.5 327 82.671000 5367 6263 2 chr6A.!!$R7 896
7 TraesCS6A01G125400 chr6D 82205581 82210670 5089 True 7258.0 7258 92.525000 1216 6290 1 chr6D.!!$R1 5074
8 TraesCS6A01G125400 chr6D 82233471 82236857 3386 True 2687.0 2687 81.468000 2884 6270 1 chr6D.!!$R3 3386
9 TraesCS6A01G125400 chr6D 81931909 81935435 3526 True 1742.5 2687 85.079000 2106 5568 2 chr6D.!!$R6 3462
10 TraesCS6A01G125400 chr6D 82135869 82139863 3994 True 1174.0 2525 84.771000 1403 5369 3 chr6D.!!$R7 3966
11 TraesCS6A01G125400 chr6D 81769661 81773070 3409 True 1165.5 2220 82.556000 2884 6127 2 chr6D.!!$R4 3243
12 TraesCS6A01G125400 chr6D 82216480 82217020 540 True 313.0 313 77.951000 5652 6210 1 chr6D.!!$R2 558
13 TraesCS6A01G125400 chr6B 157126729 157133503 6774 True 3649.5 7169 94.279500 1216 6268 2 chr6B.!!$R10 5052
14 TraesCS6A01G125400 chr6B 156737525 156740169 2644 True 2669.0 2669 84.955000 2911 5568 1 chr6B.!!$R5 2657
15 TraesCS6A01G125400 chr6B 156547576 156550147 2571 True 2231.0 2231 82.437000 2884 5452 1 chr6B.!!$R3 2568
16 TraesCS6A01G125400 chr6B 157024137 157028124 3987 True 1171.0 2555 84.585333 1416 5369 3 chr6B.!!$R9 3953
17 TraesCS6A01G125400 chr6B 157900253 157901046 793 False 787.0 787 84.635000 2098 2887 1 chr6B.!!$F1 789
18 TraesCS6A01G125400 chr6B 157484543 157485214 671 True 446.0 446 79.630000 5591 6259 1 chr6B.!!$R7 668
19 TraesCS6A01G125400 chr5D 372063375 372064165 790 True 780.0 780 84.509000 2098 2888 1 chr5D.!!$R1 790
20 TraesCS6A01G125400 chr4A 625525974 625527315 1341 False 201.0 350 91.874333 18 1223 3 chr4A.!!$F3 1205
21 TraesCS6A01G125400 chr3A 699307610 699308191 581 True 231.5 315 92.903000 6511 6855 2 chr3A.!!$R2 344
22 TraesCS6A01G125400 chr1A 224822760 224823805 1045 False 242.5 307 88.468500 51 1203 2 chr1A.!!$F2 1152
23 TraesCS6A01G125400 chr1B 341141462 341142420 958 True 226.0 296 88.024000 63 1216 2 chr1B.!!$R1 1153

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 90 3.449227 CGTACCCAGCTCGCCAGA 61.449 66.667 0.00 0.0 0.00 3.86 F
1258 2154 0.482446 AGGTTCCAAAGGACCATGCA 59.518 50.000 0.00 0.0 0.00 3.96 F
2200 3216 0.583438 CGACAAGACACACAGCAAGG 59.417 55.000 0.00 0.0 0.00 3.61 F
3144 4307 1.075601 TCTCCAACCTGCCCAATCTT 58.924 50.000 0.00 0.0 0.00 2.40 F
3889 5058 1.153369 ATCCCACAATCGGTCTGCG 60.153 57.895 0.00 0.0 0.00 5.18 F
3954 5123 0.032678 CAGGTACTATCCCAGCTGCG 59.967 60.000 8.66 0.0 36.02 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1625 2535 0.250901 AGGCCATTGCAAACGAGAGT 60.251 50.000 5.01 0.0 44.00 3.24 R
2860 3879 0.331616 AGGTTGTTGTATCCAGCCCC 59.668 55.000 0.00 0.0 34.04 5.80 R
3804 4973 0.397564 TCAGCTGACCAATCTGTGCA 59.602 50.000 13.74 0.0 0.00 4.57 R
3954 5123 1.001406 AGGTAGTGCAGTCTGTTCAGC 59.999 52.381 0.00 0.0 0.00 4.26 R
5214 6398 1.208052 GGATCAGCTTCTACACTGGCA 59.792 52.381 0.00 0.0 34.57 4.92 R
5906 7476 0.822121 GTGAGGCCCGTGGTTTCTTT 60.822 55.000 0.00 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 90 3.449227 CGTACCCAGCTCGCCAGA 61.449 66.667 0.00 0.00 0.00 3.86
1142 2038 2.073816 CGTCCGCTGGAGTGTTATTTT 58.926 47.619 0.00 0.00 29.39 1.82
1149 2045 4.631813 CGCTGGAGTGTTATTTTTAGCTCT 59.368 41.667 0.00 0.00 0.00 4.09
1257 2153 2.492088 GTTAGGTTCCAAAGGACCATGC 59.508 50.000 0.00 0.00 0.00 4.06
1258 2154 0.482446 AGGTTCCAAAGGACCATGCA 59.518 50.000 0.00 0.00 0.00 3.96
1259 2155 1.077663 AGGTTCCAAAGGACCATGCAT 59.922 47.619 0.00 0.00 0.00 3.96
1260 2156 1.205417 GGTTCCAAAGGACCATGCATG 59.795 52.381 20.19 20.19 0.00 4.06
1261 2157 1.895131 GTTCCAAAGGACCATGCATGT 59.105 47.619 24.58 13.09 0.00 3.21
1262 2158 1.838112 TCCAAAGGACCATGCATGTC 58.162 50.000 24.58 19.86 0.00 3.06
1263 2159 0.819582 CCAAAGGACCATGCATGTCC 59.180 55.000 27.40 27.40 37.53 4.02
1264 2160 1.548081 CAAAGGACCATGCATGTCCA 58.452 50.000 31.95 0.00 39.60 4.02
1317 2213 3.029483 TGATCAGCATCAGAGGAGAGT 57.971 47.619 0.00 0.00 33.80 3.24
1459 2361 4.377021 ACGTAAACATCAGACAAAGCTCA 58.623 39.130 0.00 0.00 0.00 4.26
1508 2418 5.874897 ATCAAGAGGATGGAAGAGAGAAG 57.125 43.478 0.00 0.00 34.06 2.85
1625 2535 1.408702 TGATTGAGACGCCGATGATCA 59.591 47.619 0.00 0.00 0.00 2.92
1632 2542 1.356979 CGCCGATGATCACTCTCGT 59.643 57.895 14.30 0.00 0.00 4.18
1646 2556 0.597568 TCTCGTTTGCAATGGCCTTG 59.402 50.000 3.32 7.45 40.13 3.61
1661 2571 1.386533 CCTTGCTGAAATGATCGCCT 58.613 50.000 0.00 0.00 0.00 5.52
1668 2578 2.609459 CTGAAATGATCGCCTGTGTACC 59.391 50.000 0.00 0.00 0.00 3.34
1680 2590 1.521681 GTGTACCATCTCGCCAGCC 60.522 63.158 0.00 0.00 0.00 4.85
1738 2657 6.723298 TTCAAAAGATGCCTTTTCCTGTTA 57.277 33.333 0.00 0.00 46.49 2.41
1850 2774 2.103432 TGTCAGGGAAAGCAAAGTACGA 59.897 45.455 0.00 0.00 0.00 3.43
2012 2939 3.575858 CTGAAACGTCAGTGTGAAGTG 57.424 47.619 0.00 0.00 45.44 3.16
2200 3216 0.583438 CGACAAGACACACAGCAAGG 59.417 55.000 0.00 0.00 0.00 3.61
2214 3230 3.214328 CAGCAAGGTATTCCACATACCC 58.786 50.000 7.31 0.00 43.85 3.69
2562 3578 3.812053 CCAGCAGCATTACTATCCTTGAC 59.188 47.826 0.00 0.00 0.00 3.18
2696 3715 1.619827 CACCACATGGAAAGCAATGGT 59.380 47.619 4.53 0.00 41.11 3.55
2763 3782 7.448469 GGGCAGATACCAACTCATTTATGTAAT 59.552 37.037 0.00 0.00 0.00 1.89
2784 3803 3.047718 CTCGCCGTCCTTCGCTGTA 62.048 63.158 0.00 0.00 38.35 2.74
2895 4058 3.265791 CAACCTCAGTGGAGCTATTGAC 58.734 50.000 0.00 0.00 39.96 3.18
2917 4080 2.997986 GGTACACACATAACCAACCTCG 59.002 50.000 0.00 0.00 33.28 4.63
2920 4083 2.289444 ACACACATAACCAACCTCGGAG 60.289 50.000 0.00 0.00 0.00 4.63
2972 4135 1.471684 CTTCAGTGGCAAGATTCCAGC 59.528 52.381 0.00 0.00 33.63 4.85
3144 4307 1.075601 TCTCCAACCTGCCCAATCTT 58.924 50.000 0.00 0.00 0.00 2.40
3366 4529 3.838317 TCCTTAAGAGCAGCAAGAACCTA 59.162 43.478 3.36 0.00 0.00 3.08
3448 4611 6.729690 TTGATGGTTTTGGAAATCTTCAGT 57.270 33.333 3.52 0.00 0.00 3.41
3572 4735 1.212935 ACCAATACCAGGCTGGATCAC 59.787 52.381 38.99 0.00 40.96 3.06
3691 4854 2.290641 GACAACGCAACTCATTTGGACT 59.709 45.455 0.00 0.00 35.51 3.85
3745 4914 2.143122 CAGCACTTCAATACCGTGTGT 58.857 47.619 0.00 0.00 0.00 3.72
3785 4954 6.744537 GCAGTGTTGAATCTAAGCAATAACAG 59.255 38.462 0.00 0.00 0.00 3.16
3798 4967 5.373222 AGCAATAACAGTTTCACAGGTGTA 58.627 37.500 0.00 0.00 0.00 2.90
3804 4973 5.048846 ACAGTTTCACAGGTGTAATTCCT 57.951 39.130 0.00 0.00 35.45 3.36
3825 4994 1.467734 GCACAGATTGGTCAGCTGAAG 59.532 52.381 20.19 5.19 33.94 3.02
3889 5058 1.153369 ATCCCACAATCGGTCTGCG 60.153 57.895 0.00 0.00 0.00 5.18
3940 5109 2.637382 TCCAGCAACAATCTCACAGGTA 59.363 45.455 0.00 0.00 0.00 3.08
3954 5123 0.032678 CAGGTACTATCCCAGCTGCG 59.967 60.000 8.66 0.00 36.02 5.18
3971 5140 0.667487 GCGCTGAACAGACTGCACTA 60.667 55.000 0.00 0.00 35.10 2.74
4002 5171 9.878667 TCAGCATTCAATATTTCAAACAATGAT 57.121 25.926 0.00 0.00 38.03 2.45
4021 5190 3.904339 TGATCTAGAAGGGCCTATTCCAC 59.096 47.826 6.41 0.00 0.00 4.02
4080 5249 3.192001 TCAATGAGAATCCAAAGCTGTGC 59.808 43.478 0.00 0.00 0.00 4.57
4154 5335 5.212194 CACAAAAACACGACATAAGAAGGG 58.788 41.667 0.00 0.00 0.00 3.95
4170 5351 5.468540 AGAAGGGTCTTTTTGTAATTGCC 57.531 39.130 0.00 0.00 0.00 4.52
4219 5400 1.040339 TCTTTTGTTGCTGGGGCGTT 61.040 50.000 0.00 0.00 42.25 4.84
4228 5409 0.170339 GCTGGGGCGTTTCATTGTAC 59.830 55.000 0.00 0.00 0.00 2.90
4258 5439 7.067372 TCAGGATAAATGGCATTACAACAAGAG 59.933 37.037 14.05 0.00 0.00 2.85
4266 5447 6.946340 TGGCATTACAACAAGAGATAGAAGA 58.054 36.000 0.00 0.00 0.00 2.87
4368 5552 4.339530 GGGAAGACAGAAGAAAACAAGCTT 59.660 41.667 0.00 0.00 0.00 3.74
4383 5567 4.974591 ACAAGCTTAAATTCGCTGACATC 58.025 39.130 0.00 0.00 36.45 3.06
4488 5672 2.231964 TGGCTCCAAGCTTGCAATTAAG 59.768 45.455 21.43 10.91 41.99 1.85
4503 5687 4.142600 GCAATTAAGAAGCTCAACGGTGAT 60.143 41.667 2.20 0.00 31.85 3.06
4671 5855 5.239525 GGATGATTGGCTTCATAACAGGTAC 59.760 44.000 3.93 0.00 36.48 3.34
4806 5990 5.882000 TGACATCAAATCCAGTAACATCCTG 59.118 40.000 0.00 0.00 0.00 3.86
5194 6378 3.457380 TCAATTCAGAAGGCCAGCTATCT 59.543 43.478 5.01 0.00 0.00 1.98
5214 6398 3.529734 TCTCAGATGTAGTCTCCTCCCTT 59.470 47.826 0.00 0.00 34.00 3.95
5221 6405 1.197430 AGTCTCCTCCCTTGCCAGTG 61.197 60.000 0.00 0.00 0.00 3.66
5245 6429 5.244189 AGAAGCTGATCCATAGATGCAAT 57.756 39.130 0.00 0.00 30.90 3.56
5336 6533 9.064804 TGTAAGTATGTAACATTCGTAGTTTCG 57.935 33.333 0.00 0.00 0.00 3.46
5337 6534 9.277565 GTAAGTATGTAACATTCGTAGTTTCGA 57.722 33.333 0.00 0.00 38.08 3.71
5358 6563 7.987750 TCGATAGAACTGCTACTTCTGATAT 57.012 36.000 2.47 0.00 46.15 1.63
5362 6567 9.238368 GATAGAACTGCTACTTCTGATATACCT 57.762 37.037 2.47 0.00 0.00 3.08
5397 6602 7.717875 TGTTTTGTACTTTGTACAGAGCCTAAT 59.282 33.333 13.09 0.00 0.00 1.73
5526 6991 7.921786 TGGGACAAAGTTAGTATGAGAAATG 57.078 36.000 0.00 0.00 31.92 2.32
5739 7284 4.400036 GTTAGTCCAACCATCGAACAAC 57.600 45.455 0.00 0.00 0.00 3.32
5801 7358 8.826710 TCTTCAAATTTATATAACTCAGCACGG 58.173 33.333 0.00 0.00 0.00 4.94
5834 7397 9.243637 GAATGAAGTCACTAGCAGAATAAGTAG 57.756 37.037 0.00 0.00 0.00 2.57
5900 7470 2.471255 GAAGGATTCACGTGGGCAG 58.529 57.895 17.00 0.00 46.62 4.85
5928 7499 2.951475 GAAACCACGGGCCTCACACA 62.951 60.000 0.84 0.00 0.00 3.72
5930 7501 4.704833 CCACGGGCCTCACACAGG 62.705 72.222 0.84 0.00 46.82 4.00
6124 7724 2.125552 CGGCATTGCGTCAGAGGA 60.126 61.111 1.91 0.00 0.00 3.71
6125 7725 1.741401 CGGCATTGCGTCAGAGGAA 60.741 57.895 1.91 0.00 0.00 3.36
6126 7726 1.091771 CGGCATTGCGTCAGAGGAAT 61.092 55.000 1.91 0.00 32.28 3.01
6127 7727 1.806247 CGGCATTGCGTCAGAGGAATA 60.806 52.381 1.91 0.00 30.94 1.75
6128 7728 1.599542 GGCATTGCGTCAGAGGAATAC 59.400 52.381 1.91 0.00 30.94 1.89
6129 7729 1.258982 GCATTGCGTCAGAGGAATACG 59.741 52.381 0.00 0.00 39.55 3.06
6131 7731 2.561733 TTGCGTCAGAGGAATACGAG 57.438 50.000 0.00 0.00 38.89 4.18
6193 7847 3.111939 CGAGTAGGAGGAGGCACG 58.888 66.667 0.00 0.00 0.00 5.34
6281 7943 0.941542 CGAAAGCGAAAGGGTGTTGA 59.058 50.000 0.00 0.00 40.82 3.18
6282 7944 1.535462 CGAAAGCGAAAGGGTGTTGAT 59.465 47.619 0.00 0.00 40.82 2.57
6283 7945 2.031157 CGAAAGCGAAAGGGTGTTGATT 60.031 45.455 0.00 0.00 40.82 2.57
6284 7946 3.550030 CGAAAGCGAAAGGGTGTTGATTT 60.550 43.478 0.00 0.00 40.82 2.17
6285 7947 4.368315 GAAAGCGAAAGGGTGTTGATTTT 58.632 39.130 0.00 0.00 0.00 1.82
6286 7948 4.400529 AAGCGAAAGGGTGTTGATTTTT 57.599 36.364 0.00 0.00 0.00 1.94
6313 7975 9.624697 TTTATTTTACTAGCAAAAGAGCATGTG 57.375 29.630 6.97 0.00 36.85 3.21
6314 7976 4.685169 TTACTAGCAAAAGAGCATGTGC 57.315 40.909 0.00 0.00 42.49 4.57
6315 7977 7.111865 ATTTTACTAGCAAAAGAGCATGTGCG 61.112 38.462 6.97 0.00 41.90 5.34
6316 7978 9.383183 ATTTTACTAGCAAAAGAGCATGTGCGT 62.383 37.037 6.97 0.00 41.90 5.24
6338 8000 5.969741 GTTGCAACGGGAAAAGAAAATAAC 58.030 37.500 14.90 0.00 0.00 1.89
6339 8001 4.291783 TGCAACGGGAAAAGAAAATAACG 58.708 39.130 0.00 0.00 0.00 3.18
6340 8002 3.120616 GCAACGGGAAAAGAAAATAACGC 59.879 43.478 0.00 0.00 0.00 4.84
6341 8003 4.291783 CAACGGGAAAAGAAAATAACGCA 58.708 39.130 0.00 0.00 0.00 5.24
6342 8004 3.892522 ACGGGAAAAGAAAATAACGCAC 58.107 40.909 0.00 0.00 0.00 5.34
6343 8005 2.906161 CGGGAAAAGAAAATAACGCACG 59.094 45.455 0.00 0.00 0.00 5.34
6344 8006 3.239254 GGGAAAAGAAAATAACGCACGG 58.761 45.455 0.00 0.00 0.00 4.94
6345 8007 2.659757 GGAAAAGAAAATAACGCACGGC 59.340 45.455 0.00 0.00 0.00 5.68
6346 8008 2.341318 AAAGAAAATAACGCACGGCC 57.659 45.000 0.00 0.00 0.00 6.13
6347 8009 0.524414 AAGAAAATAACGCACGGCCC 59.476 50.000 0.00 0.00 0.00 5.80
6348 8010 0.322187 AGAAAATAACGCACGGCCCT 60.322 50.000 0.00 0.00 0.00 5.19
6349 8011 1.065998 AGAAAATAACGCACGGCCCTA 60.066 47.619 0.00 0.00 0.00 3.53
6350 8012 1.738908 GAAAATAACGCACGGCCCTAA 59.261 47.619 0.00 0.00 0.00 2.69
6351 8013 1.089112 AAATAACGCACGGCCCTAAC 58.911 50.000 0.00 0.00 0.00 2.34
6352 8014 0.745486 AATAACGCACGGCCCTAACC 60.745 55.000 0.00 0.00 0.00 2.85
6353 8015 2.598098 ATAACGCACGGCCCTAACCC 62.598 60.000 0.00 0.00 0.00 4.11
6355 8017 4.708386 CGCACGGCCCTAACCCAA 62.708 66.667 0.00 0.00 0.00 4.12
6356 8018 2.044352 GCACGGCCCTAACCCAAT 60.044 61.111 0.00 0.00 0.00 3.16
6357 8019 1.225148 GCACGGCCCTAACCCAATA 59.775 57.895 0.00 0.00 0.00 1.90
6358 8020 0.394625 GCACGGCCCTAACCCAATAA 60.395 55.000 0.00 0.00 0.00 1.40
6359 8021 1.385528 CACGGCCCTAACCCAATAAC 58.614 55.000 0.00 0.00 0.00 1.89
6360 8022 0.256752 ACGGCCCTAACCCAATAACC 59.743 55.000 0.00 0.00 0.00 2.85
6361 8023 0.256464 CGGCCCTAACCCAATAACCA 59.744 55.000 0.00 0.00 0.00 3.67
6362 8024 1.133606 CGGCCCTAACCCAATAACCAT 60.134 52.381 0.00 0.00 0.00 3.55
6363 8025 2.316108 GGCCCTAACCCAATAACCATG 58.684 52.381 0.00 0.00 0.00 3.66
6364 8026 2.091555 GGCCCTAACCCAATAACCATGA 60.092 50.000 0.00 0.00 0.00 3.07
6365 8027 2.956333 GCCCTAACCCAATAACCATGAC 59.044 50.000 0.00 0.00 0.00 3.06
6366 8028 3.372675 GCCCTAACCCAATAACCATGACT 60.373 47.826 0.00 0.00 0.00 3.41
6367 8029 4.141344 GCCCTAACCCAATAACCATGACTA 60.141 45.833 0.00 0.00 0.00 2.59
6368 8030 5.632902 GCCCTAACCCAATAACCATGACTAA 60.633 44.000 0.00 0.00 0.00 2.24
6369 8031 6.062095 CCCTAACCCAATAACCATGACTAAG 58.938 44.000 0.00 0.00 0.00 2.18
6370 8032 6.126594 CCCTAACCCAATAACCATGACTAAGA 60.127 42.308 0.00 0.00 0.00 2.10
6371 8033 6.766467 CCTAACCCAATAACCATGACTAAGAC 59.234 42.308 0.00 0.00 0.00 3.01
6372 8034 6.388619 AACCCAATAACCATGACTAAGACT 57.611 37.500 0.00 0.00 0.00 3.24
6373 8035 5.990668 ACCCAATAACCATGACTAAGACTC 58.009 41.667 0.00 0.00 0.00 3.36
6374 8036 5.104485 ACCCAATAACCATGACTAAGACTCC 60.104 44.000 0.00 0.00 0.00 3.85
6375 8037 5.104527 CCCAATAACCATGACTAAGACTCCA 60.105 44.000 0.00 0.00 0.00 3.86
6376 8038 6.414732 CCAATAACCATGACTAAGACTCCAA 58.585 40.000 0.00 0.00 0.00 3.53
6377 8039 7.056635 CCAATAACCATGACTAAGACTCCAAT 58.943 38.462 0.00 0.00 0.00 3.16
6378 8040 8.210946 CCAATAACCATGACTAAGACTCCAATA 58.789 37.037 0.00 0.00 0.00 1.90
6379 8041 9.265901 CAATAACCATGACTAAGACTCCAATAG 57.734 37.037 0.00 0.00 0.00 1.73
6380 8042 8.783660 ATAACCATGACTAAGACTCCAATAGA 57.216 34.615 0.00 0.00 0.00 1.98
6381 8043 7.682787 AACCATGACTAAGACTCCAATAGAT 57.317 36.000 0.00 0.00 0.00 1.98
6382 8044 8.783660 AACCATGACTAAGACTCCAATAGATA 57.216 34.615 0.00 0.00 0.00 1.98
6383 8045 8.964533 ACCATGACTAAGACTCCAATAGATAT 57.035 34.615 0.00 0.00 0.00 1.63
6384 8046 9.386122 ACCATGACTAAGACTCCAATAGATATT 57.614 33.333 0.00 0.00 0.00 1.28
6385 8047 9.650539 CCATGACTAAGACTCCAATAGATATTG 57.349 37.037 5.73 5.73 42.00 1.90
6386 8048 9.149225 CATGACTAAGACTCCAATAGATATTGC 57.851 37.037 7.00 0.00 41.23 3.56
6387 8049 7.671302 TGACTAAGACTCCAATAGATATTGCC 58.329 38.462 7.00 0.00 41.23 4.52
6388 8050 7.290014 TGACTAAGACTCCAATAGATATTGCCA 59.710 37.037 7.00 0.00 41.23 4.92
6389 8051 8.034313 ACTAAGACTCCAATAGATATTGCCAA 57.966 34.615 7.00 0.00 41.23 4.52
6390 8052 8.153550 ACTAAGACTCCAATAGATATTGCCAAG 58.846 37.037 7.00 6.66 41.23 3.61
6391 8053 5.874093 AGACTCCAATAGATATTGCCAAGG 58.126 41.667 7.00 0.00 41.23 3.61
6392 8054 4.401925 ACTCCAATAGATATTGCCAAGGC 58.598 43.478 3.61 3.61 41.23 4.35
6393 8055 3.411446 TCCAATAGATATTGCCAAGGCG 58.589 45.455 6.60 0.00 45.51 5.52
6394 8056 3.149196 CCAATAGATATTGCCAAGGCGT 58.851 45.455 6.60 0.28 45.51 5.68
6395 8057 3.189287 CCAATAGATATTGCCAAGGCGTC 59.811 47.826 6.60 2.44 45.51 5.19
6396 8058 4.067896 CAATAGATATTGCCAAGGCGTCT 58.932 43.478 6.60 9.41 45.51 4.18
6397 8059 2.246719 AGATATTGCCAAGGCGTCTC 57.753 50.000 6.60 1.09 45.51 3.36
6398 8060 1.765314 AGATATTGCCAAGGCGTCTCT 59.235 47.619 6.60 3.36 45.51 3.10
6399 8061 2.139118 GATATTGCCAAGGCGTCTCTC 58.861 52.381 6.60 0.00 45.51 3.20
6400 8062 1.195115 TATTGCCAAGGCGTCTCTCT 58.805 50.000 6.60 0.00 45.51 3.10
6401 8063 0.107945 ATTGCCAAGGCGTCTCTCTC 60.108 55.000 6.60 0.00 45.51 3.20
6402 8064 2.202676 GCCAAGGCGTCTCTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
6403 8065 2.492090 CCAAGGCGTCTCTCTCGG 59.508 66.667 0.00 0.00 0.00 4.63
6409 8071 3.171705 GCGTCTCTCTCGGCATTAG 57.828 57.895 0.00 0.00 0.00 1.73
6410 8072 0.663688 GCGTCTCTCTCGGCATTAGA 59.336 55.000 0.00 0.00 0.00 2.10
6411 8073 1.268352 GCGTCTCTCTCGGCATTAGAT 59.732 52.381 0.00 0.00 0.00 1.98
6412 8074 2.920227 GCGTCTCTCTCGGCATTAGATG 60.920 54.545 0.00 0.00 0.00 2.90
6413 8075 2.550180 CGTCTCTCTCGGCATTAGATGA 59.450 50.000 0.00 0.00 0.00 2.92
6414 8076 3.364864 CGTCTCTCTCGGCATTAGATGAG 60.365 52.174 0.00 0.00 0.00 2.90
6415 8077 3.818210 GTCTCTCTCGGCATTAGATGAGA 59.182 47.826 0.00 0.00 36.18 3.27
6416 8078 4.277174 GTCTCTCTCGGCATTAGATGAGAA 59.723 45.833 0.00 0.00 37.06 2.87
6417 8079 5.048083 GTCTCTCTCGGCATTAGATGAGAAT 60.048 44.000 0.00 0.00 37.06 2.40
6418 8080 5.182950 TCTCTCTCGGCATTAGATGAGAATC 59.817 44.000 0.00 0.00 37.06 2.52
6419 8081 5.076182 TCTCTCGGCATTAGATGAGAATCT 58.924 41.667 0.00 0.00 37.06 2.40
6420 8082 5.048154 TCTCTCGGCATTAGATGAGAATCTG 60.048 44.000 0.00 0.00 37.06 2.90
6421 8083 3.657634 TCGGCATTAGATGAGAATCTGC 58.342 45.455 0.00 0.00 34.92 4.26
6422 8084 3.323115 TCGGCATTAGATGAGAATCTGCT 59.677 43.478 0.00 0.00 34.92 4.24
6423 8085 4.063689 CGGCATTAGATGAGAATCTGCTT 58.936 43.478 0.00 0.00 34.92 3.91
6424 8086 4.514441 CGGCATTAGATGAGAATCTGCTTT 59.486 41.667 0.00 0.00 34.92 3.51
6425 8087 5.698089 CGGCATTAGATGAGAATCTGCTTTA 59.302 40.000 0.00 0.00 34.92 1.85
6426 8088 6.370994 CGGCATTAGATGAGAATCTGCTTTAT 59.629 38.462 0.00 0.00 34.92 1.40
6427 8089 7.094890 CGGCATTAGATGAGAATCTGCTTTATT 60.095 37.037 0.00 0.00 34.92 1.40
6428 8090 8.574737 GGCATTAGATGAGAATCTGCTTTATTT 58.425 33.333 0.00 0.00 34.92 1.40
6429 8091 9.962783 GCATTAGATGAGAATCTGCTTTATTTT 57.037 29.630 0.00 0.00 34.92 1.82
6434 8096 8.136165 AGATGAGAATCTGCTTTATTTTCATGC 58.864 33.333 13.21 7.98 37.93 4.06
6435 8097 7.160547 TGAGAATCTGCTTTATTTTCATGCA 57.839 32.000 0.00 0.00 34.92 3.96
6436 8098 7.604549 TGAGAATCTGCTTTATTTTCATGCAA 58.395 30.769 0.00 0.00 34.92 4.08
6437 8099 8.255206 TGAGAATCTGCTTTATTTTCATGCAAT 58.745 29.630 0.00 0.00 34.92 3.56
6438 8100 9.740239 GAGAATCTGCTTTATTTTCATGCAATA 57.260 29.630 0.00 0.00 33.07 1.90
6450 8112 6.724694 TTTCATGCAATATTTTGTCAAGGC 57.275 33.333 0.00 0.00 35.17 4.35
6451 8113 4.422840 TCATGCAATATTTTGTCAAGGCG 58.577 39.130 0.00 0.00 35.17 5.52
6452 8114 3.932545 TGCAATATTTTGTCAAGGCGT 57.067 38.095 0.00 0.00 35.17 5.68
6453 8115 5.124617 TCATGCAATATTTTGTCAAGGCGTA 59.875 36.000 0.00 0.00 35.17 4.42
6454 8116 4.728534 TGCAATATTTTGTCAAGGCGTAC 58.271 39.130 0.00 0.00 35.17 3.67
6455 8117 4.216472 TGCAATATTTTGTCAAGGCGTACA 59.784 37.500 0.00 0.00 35.17 2.90
6456 8118 5.105957 TGCAATATTTTGTCAAGGCGTACAT 60.106 36.000 0.00 0.00 35.17 2.29
6457 8119 5.229887 GCAATATTTTGTCAAGGCGTACATG 59.770 40.000 0.00 0.00 35.17 3.21
6458 8120 2.697431 TTTTGTCAAGGCGTACATGC 57.303 45.000 0.00 0.00 0.00 4.06
6459 8121 1.598882 TTTGTCAAGGCGTACATGCA 58.401 45.000 0.00 0.00 36.28 3.96
6460 8122 1.598882 TTGTCAAGGCGTACATGCAA 58.401 45.000 0.00 0.00 36.28 4.08
6461 8123 1.155889 TGTCAAGGCGTACATGCAAG 58.844 50.000 0.00 0.00 36.28 4.01
6462 8124 0.447801 GTCAAGGCGTACATGCAAGG 59.552 55.000 0.00 0.00 36.28 3.61
6463 8125 0.036164 TCAAGGCGTACATGCAAGGT 59.964 50.000 0.00 0.00 36.28 3.50
6464 8126 0.881118 CAAGGCGTACATGCAAGGTT 59.119 50.000 0.00 0.00 36.28 3.50
6465 8127 2.080693 CAAGGCGTACATGCAAGGTTA 58.919 47.619 0.00 0.00 36.28 2.85
6466 8128 2.682856 CAAGGCGTACATGCAAGGTTAT 59.317 45.455 0.00 0.00 36.28 1.89
6467 8129 2.561569 AGGCGTACATGCAAGGTTATC 58.438 47.619 0.00 0.00 36.28 1.75
6468 8130 1.260561 GGCGTACATGCAAGGTTATCG 59.739 52.381 0.00 0.44 36.28 2.92
6469 8131 2.198406 GCGTACATGCAAGGTTATCGA 58.802 47.619 0.00 0.00 34.15 3.59
6470 8132 2.034001 GCGTACATGCAAGGTTATCGAC 60.034 50.000 0.00 0.00 34.15 4.20
6471 8133 2.215587 CGTACATGCAAGGTTATCGACG 59.784 50.000 0.00 0.00 28.09 5.12
6472 8134 1.651987 ACATGCAAGGTTATCGACGG 58.348 50.000 0.00 0.00 0.00 4.79
6473 8135 1.066430 ACATGCAAGGTTATCGACGGT 60.066 47.619 0.00 0.00 0.00 4.83
6474 8136 2.006888 CATGCAAGGTTATCGACGGTT 58.993 47.619 0.00 0.00 0.00 4.44
6475 8137 2.172851 TGCAAGGTTATCGACGGTTT 57.827 45.000 0.00 0.00 0.00 3.27
6476 8138 2.070783 TGCAAGGTTATCGACGGTTTC 58.929 47.619 0.00 0.00 0.00 2.78
6477 8139 2.289195 TGCAAGGTTATCGACGGTTTCT 60.289 45.455 0.00 0.00 0.00 2.52
6478 8140 2.740447 GCAAGGTTATCGACGGTTTCTT 59.260 45.455 0.00 0.00 0.00 2.52
6479 8141 3.181523 GCAAGGTTATCGACGGTTTCTTC 60.182 47.826 0.00 0.00 0.00 2.87
6480 8142 4.243270 CAAGGTTATCGACGGTTTCTTCT 58.757 43.478 0.00 0.00 0.00 2.85
6481 8143 3.846360 AGGTTATCGACGGTTTCTTCTG 58.154 45.455 0.00 0.00 0.00 3.02
6482 8144 3.257624 AGGTTATCGACGGTTTCTTCTGT 59.742 43.478 0.00 0.00 0.00 3.41
6483 8145 3.611549 GGTTATCGACGGTTTCTTCTGTC 59.388 47.826 0.00 0.00 39.51 3.51
6484 8146 4.483311 GTTATCGACGGTTTCTTCTGTCT 58.517 43.478 0.00 0.00 40.40 3.41
6485 8147 2.701073 TCGACGGTTTCTTCTGTCTC 57.299 50.000 0.00 0.00 40.40 3.36
6486 8148 1.268899 TCGACGGTTTCTTCTGTCTCC 59.731 52.381 0.00 0.00 40.40 3.71
6487 8149 1.000607 CGACGGTTTCTTCTGTCTCCA 60.001 52.381 0.00 0.00 40.40 3.86
6488 8150 2.545113 CGACGGTTTCTTCTGTCTCCAA 60.545 50.000 0.00 0.00 40.40 3.53
6489 8151 3.665190 GACGGTTTCTTCTGTCTCCAAT 58.335 45.455 0.00 0.00 39.71 3.16
6490 8152 4.065789 GACGGTTTCTTCTGTCTCCAATT 58.934 43.478 0.00 0.00 39.71 2.32
6491 8153 4.461198 ACGGTTTCTTCTGTCTCCAATTT 58.539 39.130 0.00 0.00 0.00 1.82
6492 8154 4.275936 ACGGTTTCTTCTGTCTCCAATTTG 59.724 41.667 0.00 0.00 0.00 2.32
6493 8155 4.320494 CGGTTTCTTCTGTCTCCAATTTGG 60.320 45.833 9.28 9.28 39.43 3.28
6494 8156 4.550422 GTTTCTTCTGTCTCCAATTTGGC 58.450 43.478 10.76 0.00 37.47 4.52
6495 8157 3.795688 TCTTCTGTCTCCAATTTGGCT 57.204 42.857 10.76 0.00 37.47 4.75
6496 8158 4.104383 TCTTCTGTCTCCAATTTGGCTT 57.896 40.909 10.76 0.00 37.47 4.35
6497 8159 4.473444 TCTTCTGTCTCCAATTTGGCTTT 58.527 39.130 10.76 0.00 37.47 3.51
6498 8160 4.279169 TCTTCTGTCTCCAATTTGGCTTTG 59.721 41.667 10.76 1.59 37.47 2.77
6499 8161 3.831323 TCTGTCTCCAATTTGGCTTTGA 58.169 40.909 10.76 3.81 37.47 2.69
6500 8162 4.410099 TCTGTCTCCAATTTGGCTTTGAT 58.590 39.130 10.76 0.00 37.47 2.57
6501 8163 5.569355 TCTGTCTCCAATTTGGCTTTGATA 58.431 37.500 10.76 4.30 37.47 2.15
6502 8164 5.649395 TCTGTCTCCAATTTGGCTTTGATAG 59.351 40.000 10.76 12.19 37.47 2.08
6503 8165 4.706476 TGTCTCCAATTTGGCTTTGATAGG 59.294 41.667 10.76 0.00 37.47 2.57
6504 8166 4.098501 GTCTCCAATTTGGCTTTGATAGGG 59.901 45.833 10.76 0.00 37.47 3.53
6505 8167 4.026052 CTCCAATTTGGCTTTGATAGGGT 58.974 43.478 10.76 0.00 37.47 4.34
6506 8168 3.768757 TCCAATTTGGCTTTGATAGGGTG 59.231 43.478 10.76 0.00 37.47 4.61
6507 8169 3.515104 CCAATTTGGCTTTGATAGGGTGT 59.485 43.478 1.71 0.00 0.00 4.16
6508 8170 4.020307 CCAATTTGGCTTTGATAGGGTGTT 60.020 41.667 1.71 0.00 0.00 3.32
6509 8171 5.170748 CAATTTGGCTTTGATAGGGTGTTC 58.829 41.667 0.00 0.00 0.00 3.18
6514 8176 3.429410 GGCTTTGATAGGGTGTTCATTGC 60.429 47.826 0.00 0.00 0.00 3.56
6531 8193 1.140804 GCAAAAACGCCACACCACT 59.859 52.632 0.00 0.00 0.00 4.00
6561 8223 2.088423 TCCAATTTAATCCAACGCGCT 58.912 42.857 5.73 0.00 0.00 5.92
6566 8228 2.658373 TTAATCCAACGCGCTCTACA 57.342 45.000 5.73 0.00 0.00 2.74
6574 8236 2.152699 CGCGCTCTACACGTTCCAG 61.153 63.158 5.56 0.00 0.00 3.86
6575 8237 1.080705 GCGCTCTACACGTTCCAGT 60.081 57.895 0.00 0.00 0.00 4.00
6581 8243 0.732880 CTACACGTTCCAGTGAGCCG 60.733 60.000 4.00 0.00 44.43 5.52
6653 8316 1.838715 GACTTAACTCCTTCCTCCCCC 59.161 57.143 0.00 0.00 0.00 5.40
6654 8317 1.153565 ACTTAACTCCTTCCTCCCCCA 59.846 52.381 0.00 0.00 0.00 4.96
6655 8318 1.560146 CTTAACTCCTTCCTCCCCCAC 59.440 57.143 0.00 0.00 0.00 4.61
6656 8319 0.253020 TAACTCCTTCCTCCCCCACC 60.253 60.000 0.00 0.00 0.00 4.61
6673 8574 3.434309 CCACCACTCCCTCAATTCATTT 58.566 45.455 0.00 0.00 0.00 2.32
6681 8582 2.302445 CCCTCAATTCATTTGGCAACCA 59.698 45.455 0.00 0.00 35.92 3.67
6706 8607 0.108585 TGCTCCGCTCTTTGGTTCTT 59.891 50.000 0.00 0.00 0.00 2.52
6765 8666 3.069318 GGCGACTCCTTCTCCGGT 61.069 66.667 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.147732 TCTATTGGAGATGCTCTGAATACTTTA 57.852 33.333 0.00 0.00 0.00 1.85
4 5 7.930865 GTCTATTGGAGATGCTCTGAATACTTT 59.069 37.037 0.00 0.00 36.29 2.66
8 9 6.018589 CGTCTATTGGAGATGCTCTGAATA 57.981 41.667 0.00 0.00 36.29 1.75
9 10 4.880759 CGTCTATTGGAGATGCTCTGAAT 58.119 43.478 0.00 0.00 36.29 2.57
11 12 3.998099 CGTCTATTGGAGATGCTCTGA 57.002 47.619 0.00 0.00 36.29 3.27
20 21 5.828299 TTAATTTTGGGCGTCTATTGGAG 57.172 39.130 0.00 0.00 0.00 3.86
26 27 5.047847 CGAGAGATTAATTTTGGGCGTCTA 58.952 41.667 0.00 0.00 0.00 2.59
31 32 2.854805 GCGCGAGAGATTAATTTTGGGC 60.855 50.000 12.10 0.00 0.00 5.36
71 90 3.133464 CGCGTGGCCATGACCATT 61.133 61.111 29.54 0.00 43.01 3.16
1175 2071 3.162666 CCCAATATCAGCCTCGTACCTA 58.837 50.000 0.00 0.00 0.00 3.08
1180 2076 1.069765 CGCCCAATATCAGCCTCGT 59.930 57.895 0.00 0.00 0.00 4.18
1257 2153 0.589708 CTGTGCTGTGTGTGGACATG 59.410 55.000 0.00 0.00 35.36 3.21
1258 2154 0.535780 CCTGTGCTGTGTGTGGACAT 60.536 55.000 0.00 0.00 35.36 3.06
1259 2155 1.153188 CCTGTGCTGTGTGTGGACA 60.153 57.895 0.00 0.00 34.72 4.02
1260 2156 2.546494 GCCTGTGCTGTGTGTGGAC 61.546 63.158 0.00 0.00 33.53 4.02
1261 2157 2.203195 GCCTGTGCTGTGTGTGGA 60.203 61.111 0.00 0.00 33.53 4.02
1262 2158 3.653009 CGCCTGTGCTGTGTGTGG 61.653 66.667 0.00 0.00 34.43 4.17
1263 2159 2.378945 GAACGCCTGTGCTGTGTGTG 62.379 60.000 0.00 0.00 34.43 3.82
1264 2160 2.124736 AACGCCTGTGCTGTGTGT 60.125 55.556 0.00 0.00 34.43 3.72
1314 2210 2.109126 GCCGGCTGGTTCATCACTC 61.109 63.158 22.15 0.00 37.67 3.51
1317 2213 3.329889 AGGCCGGCTGGTTCATCA 61.330 61.111 28.56 0.00 37.67 3.07
1459 2361 5.659971 ACTTACCCTTATCACCTTATCACGT 59.340 40.000 0.00 0.00 0.00 4.49
1508 2418 3.702147 CCTGCTGGGTGATCATCTC 57.298 57.895 5.82 0.00 0.00 2.75
1625 2535 0.250901 AGGCCATTGCAAACGAGAGT 60.251 50.000 5.01 0.00 44.00 3.24
1646 2556 1.089920 ACACAGGCGATCATTTCAGC 58.910 50.000 0.00 0.00 0.00 4.26
1668 2578 1.728971 GAATATTCGGCTGGCGAGATG 59.271 52.381 25.05 0.00 0.00 2.90
1680 2590 6.122850 TGGTGAAGATTTGCAGAATATTCG 57.877 37.500 9.78 6.40 32.27 3.34
1850 2774 5.880332 TCCTTAATGAATTCTTACAGCGCTT 59.120 36.000 7.50 1.63 0.00 4.68
2006 2933 3.270027 CCAGTTCACACTTCACACTTCA 58.730 45.455 0.00 0.00 0.00 3.02
2007 2934 2.614057 CCCAGTTCACACTTCACACTTC 59.386 50.000 0.00 0.00 0.00 3.01
2008 2935 2.238646 TCCCAGTTCACACTTCACACTT 59.761 45.455 0.00 0.00 0.00 3.16
2009 2936 1.837439 TCCCAGTTCACACTTCACACT 59.163 47.619 0.00 0.00 0.00 3.55
2010 2937 2.325583 TCCCAGTTCACACTTCACAC 57.674 50.000 0.00 0.00 0.00 3.82
2011 2938 2.917933 CTTCCCAGTTCACACTTCACA 58.082 47.619 0.00 0.00 0.00 3.58
2012 2939 1.604278 GCTTCCCAGTTCACACTTCAC 59.396 52.381 0.00 0.00 0.00 3.18
2093 3087 4.574013 CACTGACTGGATAAAGCATCTTCC 59.426 45.833 0.00 0.00 33.78 3.46
2200 3216 3.181443 CCAAGGGAGGGTATGTGGAATAC 60.181 52.174 0.00 0.00 0.00 1.89
2214 3230 3.259633 AAGTGCGAGGCCAAGGGAG 62.260 63.158 5.01 0.00 0.00 4.30
2272 3288 1.000270 AGCTCTTCTCCTGCTCCGA 60.000 57.895 0.00 0.00 30.41 4.55
2423 3439 2.356667 CCTGGAGGCCCTTCCAAC 59.643 66.667 14.32 0.00 46.20 3.77
2426 3442 3.653122 TACCCCTGGAGGCCCTTCC 62.653 68.421 0.00 0.25 37.77 3.46
2443 3459 2.187958 CCCAAGGGACTGTGAGATGTA 58.812 52.381 0.00 0.00 40.86 2.29
2696 3715 3.761657 GCATTGAGTGCGATCAAATTCA 58.238 40.909 7.40 0.00 45.23 2.57
2763 3782 4.189188 GCGAAGGACGGCGAGCTA 62.189 66.667 16.62 0.00 42.83 3.32
2784 3803 7.601856 TGAATTTGTTGAAAGACAGTTCAAGT 58.398 30.769 0.76 0.00 45.65 3.16
2860 3879 0.331616 AGGTTGTTGTATCCAGCCCC 59.668 55.000 0.00 0.00 34.04 5.80
2895 4058 2.997986 GAGGTTGGTTATGTGTGTACCG 59.002 50.000 0.00 0.00 34.62 4.02
2917 4080 5.622346 AGATCAAGGGTTACAAGATCTCC 57.378 43.478 0.00 0.00 40.93 3.71
2920 4083 5.745227 TCCAAGATCAAGGGTTACAAGATC 58.255 41.667 0.00 0.00 36.29 2.75
2972 4135 7.226325 CCAATTTCTTGAGCTGTCCTATAGAAG 59.774 40.741 0.00 0.00 34.04 2.85
3366 4529 1.256812 GCCCCATAAGCAGTGTTGTT 58.743 50.000 0.00 0.00 0.00 2.83
3448 4611 7.624360 AATTGCAACCTTGTATATCGAGAAA 57.376 32.000 0.00 0.00 0.00 2.52
3572 4735 8.469200 CCATATAGAAGAGATTGCTTAGAGAGG 58.531 40.741 0.00 0.00 0.00 3.69
3691 4854 1.141657 AGGCAGCTCAAAGACTGTTGA 59.858 47.619 0.00 0.00 36.26 3.18
3745 4914 4.098914 ACACTGCTGGGAAAGATGTAAA 57.901 40.909 0.00 0.00 0.00 2.01
3798 4967 3.087031 CTGACCAATCTGTGCAGGAATT 58.913 45.455 0.00 0.00 0.00 2.17
3804 4973 0.397564 TCAGCTGACCAATCTGTGCA 59.602 50.000 13.74 0.00 0.00 4.57
3825 4994 1.884235 AGTCAAGTACAGCAAGCACC 58.116 50.000 0.00 0.00 0.00 5.01
3889 5058 1.334869 CACCTGCAAGTTTGTGAGGTC 59.665 52.381 12.17 0.00 39.57 3.85
3954 5123 1.001406 AGGTAGTGCAGTCTGTTCAGC 59.999 52.381 0.00 0.00 0.00 4.26
3963 5132 2.867109 ATGCTGAAAGGTAGTGCAGT 57.133 45.000 0.00 0.00 37.07 4.40
3971 5140 8.149647 TGTTTGAAATATTGAATGCTGAAAGGT 58.850 29.630 0.00 0.00 0.00 3.50
4002 5171 2.250273 AGGTGGAATAGGCCCTTCTAGA 59.750 50.000 13.70 0.00 0.00 2.43
4064 5233 1.589716 GCCGCACAGCTTTGGATTCT 61.590 55.000 1.35 0.00 0.00 2.40
4154 5335 5.815222 ACACCAAAGGCAATTACAAAAAGAC 59.185 36.000 0.00 0.00 0.00 3.01
4170 5351 2.223805 GCCTCCAAAGAACACACCAAAG 60.224 50.000 0.00 0.00 0.00 2.77
4219 5400 9.066892 GCCATTTATCCTGATTAGTACAATGAA 57.933 33.333 0.00 0.00 0.00 2.57
4228 5409 8.849168 TGTTGTAATGCCATTTATCCTGATTAG 58.151 33.333 0.00 0.00 0.00 1.73
4266 5447 6.656902 TGCTTCAACATCTCCATTATTCTCT 58.343 36.000 0.00 0.00 0.00 3.10
4368 5552 5.412594 AGCTTTCAAGATGTCAGCGAATTTA 59.587 36.000 0.00 0.00 35.53 1.40
4383 5567 6.806249 TGTCAAAGTTGTTTGTAGCTTTCAAG 59.194 34.615 0.00 0.00 43.22 3.02
4488 5672 3.262420 ACACATATCACCGTTGAGCTTC 58.738 45.455 0.00 0.00 34.35 3.86
4503 5687 4.104086 ACTCCCTTTCCATCAGACACATA 58.896 43.478 0.00 0.00 0.00 2.29
4671 5855 4.748600 TCAAGAAATGAGCTAGCATCATCG 59.251 41.667 21.98 12.77 36.38 3.84
4806 5990 7.814587 ACATAAGCTTTAAATTCTTTGTCCAGC 59.185 33.333 3.20 0.00 0.00 4.85
5194 6378 3.636679 CAAGGGAGGAGACTACATCTGA 58.363 50.000 0.00 0.00 46.31 3.27
5214 6398 1.208052 GGATCAGCTTCTACACTGGCA 59.792 52.381 0.00 0.00 34.57 4.92
5221 6405 5.144692 TGCATCTATGGATCAGCTTCTAC 57.855 43.478 0.00 0.00 0.00 2.59
5245 6429 7.828717 TGTAGTTCATTTTATCTTGGCTGATCA 59.171 33.333 0.00 0.00 0.00 2.92
5314 6504 9.661187 CTATCGAAACTACGAATGTTACATACT 57.339 33.333 0.00 0.00 45.16 2.12
5315 6505 9.655769 TCTATCGAAACTACGAATGTTACATAC 57.344 33.333 0.00 0.00 45.16 2.39
5317 6507 9.017669 GTTCTATCGAAACTACGAATGTTACAT 57.982 33.333 0.00 0.00 45.16 2.29
5318 6508 8.239314 AGTTCTATCGAAACTACGAATGTTACA 58.761 33.333 0.00 0.00 45.16 2.41
5319 6509 8.521860 CAGTTCTATCGAAACTACGAATGTTAC 58.478 37.037 0.82 0.00 45.16 2.50
5320 6510 7.219535 GCAGTTCTATCGAAACTACGAATGTTA 59.780 37.037 0.82 0.00 45.16 2.41
5321 6511 6.034683 GCAGTTCTATCGAAACTACGAATGTT 59.965 38.462 0.82 0.00 45.16 2.71
5336 6533 9.238368 AGGTATATCAGAAGTAGCAGTTCTATC 57.762 37.037 6.09 0.00 35.80 2.08
5337 6534 9.594936 AAGGTATATCAGAAGTAGCAGTTCTAT 57.405 33.333 6.09 1.60 35.80 1.98
5397 6602 4.462483 CCTAAAGCTCAAAATGGCAACCTA 59.538 41.667 0.00 0.00 0.00 3.08
5688 7169 9.706691 ACCTTGATGTATAGTAATTCGGTAATG 57.293 33.333 0.00 0.00 0.00 1.90
5739 7284 5.869753 ACGTTCTCAAATTCTCATTCCAG 57.130 39.130 0.00 0.00 0.00 3.86
5801 7358 3.126000 GCTAGTGACTTCATTCTGTTGCC 59.874 47.826 0.00 0.00 0.00 4.52
5834 7397 3.821600 TCTGATAGCCATTCCTCTCGTAC 59.178 47.826 0.00 0.00 0.00 3.67
5906 7476 0.822121 GTGAGGCCCGTGGTTTCTTT 60.822 55.000 0.00 0.00 0.00 2.52
5952 7541 3.046390 CGGAAGAACTCTGATGCGTATC 58.954 50.000 6.54 6.54 31.20 2.24
5967 7566 3.079578 TCGTAGAAGAAGCTTCGGAAGA 58.920 45.455 21.45 13.13 39.20 2.87
6124 7724 1.681793 ACGCTGGCATCTACTCGTATT 59.318 47.619 0.00 0.00 0.00 1.89
6125 7725 1.001268 CACGCTGGCATCTACTCGTAT 60.001 52.381 0.00 0.00 0.00 3.06
6126 7726 0.380733 CACGCTGGCATCTACTCGTA 59.619 55.000 0.00 0.00 0.00 3.43
6127 7727 1.139734 CACGCTGGCATCTACTCGT 59.860 57.895 0.00 0.00 0.00 4.18
6128 7728 2.233654 GCACGCTGGCATCTACTCG 61.234 63.158 0.00 0.00 0.00 4.18
6129 7729 2.233654 CGCACGCTGGCATCTACTC 61.234 63.158 0.00 0.00 0.00 2.59
6131 7731 3.929948 GCGCACGCTGGCATCTAC 61.930 66.667 7.96 0.00 38.26 2.59
6180 7821 2.439701 CGGACGTGCCTCCTCCTA 60.440 66.667 0.00 0.00 0.00 2.94
6287 7949 9.624697 CACATGCTCTTTTGCTAGTAAAATAAA 57.375 29.630 17.51 7.27 0.00 1.40
6288 7950 7.754924 GCACATGCTCTTTTGCTAGTAAAATAA 59.245 33.333 17.51 9.35 38.21 1.40
6289 7951 7.250569 GCACATGCTCTTTTGCTAGTAAAATA 58.749 34.615 17.51 10.71 38.21 1.40
6290 7952 6.095377 GCACATGCTCTTTTGCTAGTAAAAT 58.905 36.000 17.51 1.79 38.21 1.82
6291 7953 5.460646 GCACATGCTCTTTTGCTAGTAAAA 58.539 37.500 16.48 16.48 38.21 1.52
6292 7954 4.378356 CGCACATGCTCTTTTGCTAGTAAA 60.378 41.667 1.42 1.42 39.32 2.01
6293 7955 3.125146 CGCACATGCTCTTTTGCTAGTAA 59.875 43.478 1.82 0.00 39.32 2.24
6294 7956 2.672874 CGCACATGCTCTTTTGCTAGTA 59.327 45.455 1.82 0.00 39.32 1.82
6295 7957 1.466167 CGCACATGCTCTTTTGCTAGT 59.534 47.619 1.82 0.00 39.32 2.57
6296 7958 1.466167 ACGCACATGCTCTTTTGCTAG 59.534 47.619 1.82 0.00 39.32 3.42
6297 7959 1.522668 ACGCACATGCTCTTTTGCTA 58.477 45.000 1.82 0.00 39.32 3.49
6298 7960 0.670162 AACGCACATGCTCTTTTGCT 59.330 45.000 1.82 0.00 39.32 3.91
6299 7961 0.780002 CAACGCACATGCTCTTTTGC 59.220 50.000 1.82 0.00 39.32 3.68
6300 7962 0.780002 GCAACGCACATGCTCTTTTG 59.220 50.000 1.82 1.92 40.64 2.44
6301 7963 0.385029 TGCAACGCACATGCTCTTTT 59.615 45.000 1.82 0.00 44.14 2.27
6302 7964 0.385029 TTGCAACGCACATGCTCTTT 59.615 45.000 0.00 0.00 44.14 2.52
6303 7965 0.318107 GTTGCAACGCACATGCTCTT 60.318 50.000 14.90 0.00 44.14 2.85
6304 7966 1.283793 GTTGCAACGCACATGCTCT 59.716 52.632 14.90 0.00 44.14 4.09
6305 7967 2.076628 CGTTGCAACGCACATGCTC 61.077 57.895 35.89 2.57 46.06 4.26
6306 7968 2.051076 CGTTGCAACGCACATGCT 60.051 55.556 35.89 0.00 46.06 3.79
6315 7977 5.331980 CGTTATTTTCTTTTCCCGTTGCAAC 60.332 40.000 19.89 19.89 0.00 4.17
6316 7978 4.740695 CGTTATTTTCTTTTCCCGTTGCAA 59.259 37.500 0.00 0.00 0.00 4.08
6317 7979 4.291783 CGTTATTTTCTTTTCCCGTTGCA 58.708 39.130 0.00 0.00 0.00 4.08
6318 7980 3.120616 GCGTTATTTTCTTTTCCCGTTGC 59.879 43.478 0.00 0.00 0.00 4.17
6319 7981 4.147479 GTGCGTTATTTTCTTTTCCCGTTG 59.853 41.667 0.00 0.00 0.00 4.10
6320 7982 4.292599 GTGCGTTATTTTCTTTTCCCGTT 58.707 39.130 0.00 0.00 0.00 4.44
6321 7983 3.607542 CGTGCGTTATTTTCTTTTCCCGT 60.608 43.478 0.00 0.00 0.00 5.28
6322 7984 2.906161 CGTGCGTTATTTTCTTTTCCCG 59.094 45.455 0.00 0.00 0.00 5.14
6323 7985 3.239254 CCGTGCGTTATTTTCTTTTCCC 58.761 45.455 0.00 0.00 0.00 3.97
6324 7986 2.659757 GCCGTGCGTTATTTTCTTTTCC 59.340 45.455 0.00 0.00 0.00 3.13
6325 7987 2.659757 GGCCGTGCGTTATTTTCTTTTC 59.340 45.455 0.00 0.00 0.00 2.29
6326 7988 2.608506 GGGCCGTGCGTTATTTTCTTTT 60.609 45.455 0.00 0.00 0.00 2.27
6327 7989 1.068125 GGGCCGTGCGTTATTTTCTTT 60.068 47.619 0.00 0.00 0.00 2.52
6328 7990 0.524414 GGGCCGTGCGTTATTTTCTT 59.476 50.000 0.00 0.00 0.00 2.52
6329 7991 0.322187 AGGGCCGTGCGTTATTTTCT 60.322 50.000 0.00 0.00 0.00 2.52
6330 7992 1.371595 TAGGGCCGTGCGTTATTTTC 58.628 50.000 8.57 0.00 0.00 2.29
6331 7993 1.469703 GTTAGGGCCGTGCGTTATTTT 59.530 47.619 8.57 0.00 0.00 1.82
6332 7994 1.089112 GTTAGGGCCGTGCGTTATTT 58.911 50.000 8.57 0.00 0.00 1.40
6333 7995 0.745486 GGTTAGGGCCGTGCGTTATT 60.745 55.000 8.57 0.00 0.00 1.40
6334 7996 1.153309 GGTTAGGGCCGTGCGTTAT 60.153 57.895 8.57 0.00 0.00 1.89
6335 7997 2.265424 GGTTAGGGCCGTGCGTTA 59.735 61.111 8.57 0.00 0.00 3.18
6336 7998 4.710167 GGGTTAGGGCCGTGCGTT 62.710 66.667 8.57 0.00 0.00 4.84
6338 8000 2.596553 TATTGGGTTAGGGCCGTGCG 62.597 60.000 8.57 0.00 0.00 5.34
6339 8001 0.394625 TTATTGGGTTAGGGCCGTGC 60.395 55.000 8.57 0.47 0.00 5.34
6340 8002 1.385528 GTTATTGGGTTAGGGCCGTG 58.614 55.000 8.57 0.00 0.00 4.94
6341 8003 0.256752 GGTTATTGGGTTAGGGCCGT 59.743 55.000 2.24 2.24 0.00 5.68
6342 8004 0.256464 TGGTTATTGGGTTAGGGCCG 59.744 55.000 0.00 0.00 0.00 6.13
6343 8005 2.091555 TCATGGTTATTGGGTTAGGGCC 60.092 50.000 0.00 0.00 0.00 5.80
6344 8006 2.956333 GTCATGGTTATTGGGTTAGGGC 59.044 50.000 0.00 0.00 0.00 5.19
6345 8007 4.519906 AGTCATGGTTATTGGGTTAGGG 57.480 45.455 0.00 0.00 0.00 3.53
6346 8008 6.766467 GTCTTAGTCATGGTTATTGGGTTAGG 59.234 42.308 0.00 0.00 0.00 2.69
6347 8009 7.565680 AGTCTTAGTCATGGTTATTGGGTTAG 58.434 38.462 0.00 0.00 0.00 2.34
6348 8010 7.365295 GGAGTCTTAGTCATGGTTATTGGGTTA 60.365 40.741 0.00 0.00 0.00 2.85
6349 8011 6.388619 AGTCTTAGTCATGGTTATTGGGTT 57.611 37.500 0.00 0.00 0.00 4.11
6350 8012 5.104485 GGAGTCTTAGTCATGGTTATTGGGT 60.104 44.000 0.00 0.00 0.00 4.51
6351 8013 5.104527 TGGAGTCTTAGTCATGGTTATTGGG 60.105 44.000 0.00 0.00 0.00 4.12
6352 8014 5.989477 TGGAGTCTTAGTCATGGTTATTGG 58.011 41.667 0.00 0.00 0.00 3.16
6353 8015 9.265901 CTATTGGAGTCTTAGTCATGGTTATTG 57.734 37.037 0.00 0.00 0.00 1.90
6354 8016 9.213777 TCTATTGGAGTCTTAGTCATGGTTATT 57.786 33.333 0.00 0.00 0.00 1.40
6355 8017 8.783660 TCTATTGGAGTCTTAGTCATGGTTAT 57.216 34.615 0.00 0.00 0.00 1.89
6356 8018 8.783660 ATCTATTGGAGTCTTAGTCATGGTTA 57.216 34.615 0.00 0.00 0.00 2.85
6357 8019 7.682787 ATCTATTGGAGTCTTAGTCATGGTT 57.317 36.000 0.00 0.00 0.00 3.67
6358 8020 8.964533 ATATCTATTGGAGTCTTAGTCATGGT 57.035 34.615 0.00 0.00 0.00 3.55
6359 8021 9.650539 CAATATCTATTGGAGTCTTAGTCATGG 57.349 37.037 0.00 0.00 39.42 3.66
6360 8022 9.149225 GCAATATCTATTGGAGTCTTAGTCATG 57.851 37.037 10.97 0.00 42.46 3.07
6361 8023 8.317679 GGCAATATCTATTGGAGTCTTAGTCAT 58.682 37.037 10.97 0.00 42.46 3.06
6362 8024 7.290014 TGGCAATATCTATTGGAGTCTTAGTCA 59.710 37.037 10.97 0.00 42.46 3.41
6363 8025 7.671302 TGGCAATATCTATTGGAGTCTTAGTC 58.329 38.462 10.97 0.00 42.46 2.59
6364 8026 7.618019 TGGCAATATCTATTGGAGTCTTAGT 57.382 36.000 10.97 0.00 42.46 2.24
6365 8027 7.605691 CCTTGGCAATATCTATTGGAGTCTTAG 59.394 40.741 0.00 0.00 42.46 2.18
6366 8028 7.453393 CCTTGGCAATATCTATTGGAGTCTTA 58.547 38.462 0.00 0.00 42.46 2.10
6367 8029 6.302269 CCTTGGCAATATCTATTGGAGTCTT 58.698 40.000 0.00 0.00 42.46 3.01
6368 8030 5.747248 GCCTTGGCAATATCTATTGGAGTCT 60.747 44.000 6.79 0.00 42.46 3.24
6369 8031 4.457257 GCCTTGGCAATATCTATTGGAGTC 59.543 45.833 6.79 0.00 42.46 3.36
6370 8032 4.401925 GCCTTGGCAATATCTATTGGAGT 58.598 43.478 6.79 0.00 42.46 3.85
6371 8033 3.438087 CGCCTTGGCAATATCTATTGGAG 59.562 47.826 12.45 0.00 42.46 3.86
6372 8034 3.181445 ACGCCTTGGCAATATCTATTGGA 60.181 43.478 12.45 0.00 42.46 3.53
6373 8035 3.149196 ACGCCTTGGCAATATCTATTGG 58.851 45.455 12.45 0.00 42.46 3.16
6374 8036 4.067896 AGACGCCTTGGCAATATCTATTG 58.932 43.478 12.45 5.71 44.44 1.90
6375 8037 4.040952 AGAGACGCCTTGGCAATATCTATT 59.959 41.667 12.45 0.00 0.00 1.73
6376 8038 3.580458 AGAGACGCCTTGGCAATATCTAT 59.420 43.478 12.45 3.49 0.00 1.98
6377 8039 2.965831 AGAGACGCCTTGGCAATATCTA 59.034 45.455 12.45 0.00 0.00 1.98
6378 8040 1.765314 AGAGACGCCTTGGCAATATCT 59.235 47.619 12.45 8.13 0.00 1.98
6379 8041 2.139118 GAGAGACGCCTTGGCAATATC 58.861 52.381 12.45 6.01 0.00 1.63
6380 8042 1.765314 AGAGAGACGCCTTGGCAATAT 59.235 47.619 12.45 0.00 0.00 1.28
6381 8043 1.137086 GAGAGAGACGCCTTGGCAATA 59.863 52.381 12.45 0.00 0.00 1.90
6382 8044 0.107945 GAGAGAGACGCCTTGGCAAT 60.108 55.000 12.45 0.00 0.00 3.56
6383 8045 1.293498 GAGAGAGACGCCTTGGCAA 59.707 57.895 12.45 0.00 0.00 4.52
6384 8046 2.973899 GAGAGAGACGCCTTGGCA 59.026 61.111 12.45 0.00 0.00 4.92
6385 8047 2.202676 CGAGAGAGACGCCTTGGC 60.203 66.667 0.75 0.75 0.00 4.52
6386 8048 2.492090 CCGAGAGAGACGCCTTGG 59.508 66.667 0.00 0.00 0.00 3.61
6387 8049 2.202676 GCCGAGAGAGACGCCTTG 60.203 66.667 0.00 0.00 0.00 3.61
6388 8050 1.608717 AATGCCGAGAGAGACGCCTT 61.609 55.000 0.00 0.00 0.00 4.35
6389 8051 0.752009 TAATGCCGAGAGAGACGCCT 60.752 55.000 0.00 0.00 0.00 5.52
6390 8052 0.318275 CTAATGCCGAGAGAGACGCC 60.318 60.000 0.00 0.00 0.00 5.68
6391 8053 0.663688 TCTAATGCCGAGAGAGACGC 59.336 55.000 0.00 0.00 0.00 5.19
6392 8054 2.550180 TCATCTAATGCCGAGAGAGACG 59.450 50.000 0.00 0.00 0.00 4.18
6393 8055 3.818210 TCTCATCTAATGCCGAGAGAGAC 59.182 47.826 0.00 0.00 31.11 3.36
6394 8056 4.092116 TCTCATCTAATGCCGAGAGAGA 57.908 45.455 0.00 0.00 31.11 3.10
6395 8057 4.844998 TTCTCATCTAATGCCGAGAGAG 57.155 45.455 0.00 0.00 35.99 3.20
6396 8058 5.048154 CAGATTCTCATCTAATGCCGAGAGA 60.048 44.000 0.00 0.00 37.71 3.10
6397 8059 5.162794 CAGATTCTCATCTAATGCCGAGAG 58.837 45.833 0.00 0.00 37.71 3.20
6398 8060 4.560311 GCAGATTCTCATCTAATGCCGAGA 60.560 45.833 0.00 0.00 37.71 4.04
6399 8061 3.679025 GCAGATTCTCATCTAATGCCGAG 59.321 47.826 0.00 0.00 37.71 4.63
6400 8062 3.323115 AGCAGATTCTCATCTAATGCCGA 59.677 43.478 0.00 0.00 37.71 5.54
6401 8063 3.661944 AGCAGATTCTCATCTAATGCCG 58.338 45.455 0.00 0.00 37.71 5.69
6402 8064 7.684937 ATAAAGCAGATTCTCATCTAATGCC 57.315 36.000 0.00 0.00 37.71 4.40
6403 8065 9.962783 AAAATAAAGCAGATTCTCATCTAATGC 57.037 29.630 0.00 0.00 37.71 3.56
6408 8070 8.136165 GCATGAAAATAAAGCAGATTCTCATCT 58.864 33.333 0.00 0.00 40.79 2.90
6409 8071 7.919091 TGCATGAAAATAAAGCAGATTCTCATC 59.081 33.333 0.00 0.00 0.00 2.92
6410 8072 7.778083 TGCATGAAAATAAAGCAGATTCTCAT 58.222 30.769 0.00 0.00 0.00 2.90
6411 8073 7.160547 TGCATGAAAATAAAGCAGATTCTCA 57.839 32.000 0.00 0.00 0.00 3.27
6412 8074 8.644318 ATTGCATGAAAATAAAGCAGATTCTC 57.356 30.769 0.00 0.00 36.47 2.87
6424 8086 8.881743 GCCTTGACAAAATATTGCATGAAAATA 58.118 29.630 0.00 0.00 40.34 1.40
6425 8087 7.413219 CGCCTTGACAAAATATTGCATGAAAAT 60.413 33.333 0.00 0.00 40.34 1.82
6426 8088 6.128607 CGCCTTGACAAAATATTGCATGAAAA 60.129 34.615 0.00 0.00 40.34 2.29
6427 8089 5.348179 CGCCTTGACAAAATATTGCATGAAA 59.652 36.000 0.00 0.00 40.34 2.69
6428 8090 4.863689 CGCCTTGACAAAATATTGCATGAA 59.136 37.500 0.00 0.00 40.34 2.57
6429 8091 4.082300 ACGCCTTGACAAAATATTGCATGA 60.082 37.500 0.00 0.00 40.34 3.07
6430 8092 4.175516 ACGCCTTGACAAAATATTGCATG 58.824 39.130 0.00 0.00 40.34 4.06
6431 8093 4.454728 ACGCCTTGACAAAATATTGCAT 57.545 36.364 0.00 0.00 40.34 3.96
6432 8094 3.932545 ACGCCTTGACAAAATATTGCA 57.067 38.095 0.00 0.00 40.34 4.08
6433 8095 4.728534 TGTACGCCTTGACAAAATATTGC 58.271 39.130 0.00 0.00 40.34 3.56
6434 8096 5.229887 GCATGTACGCCTTGACAAAATATTG 59.770 40.000 0.00 0.00 42.46 1.90
6435 8097 5.105957 TGCATGTACGCCTTGACAAAATATT 60.106 36.000 0.00 0.00 0.00 1.28
6436 8098 4.397730 TGCATGTACGCCTTGACAAAATAT 59.602 37.500 0.00 0.00 0.00 1.28
6437 8099 3.753797 TGCATGTACGCCTTGACAAAATA 59.246 39.130 0.00 0.00 0.00 1.40
6438 8100 2.556189 TGCATGTACGCCTTGACAAAAT 59.444 40.909 0.00 0.00 0.00 1.82
6439 8101 1.950216 TGCATGTACGCCTTGACAAAA 59.050 42.857 0.00 0.00 0.00 2.44
6440 8102 1.598882 TGCATGTACGCCTTGACAAA 58.401 45.000 0.00 0.00 0.00 2.83
6441 8103 1.535028 CTTGCATGTACGCCTTGACAA 59.465 47.619 0.00 0.00 0.00 3.18
6442 8104 1.155889 CTTGCATGTACGCCTTGACA 58.844 50.000 0.00 0.00 0.00 3.58
6443 8105 0.447801 CCTTGCATGTACGCCTTGAC 59.552 55.000 0.00 0.00 0.00 3.18
6444 8106 0.036164 ACCTTGCATGTACGCCTTGA 59.964 50.000 0.00 0.00 0.00 3.02
6445 8107 0.881118 AACCTTGCATGTACGCCTTG 59.119 50.000 0.00 0.00 0.00 3.61
6446 8108 2.483014 TAACCTTGCATGTACGCCTT 57.517 45.000 0.00 0.00 0.00 4.35
6447 8109 2.561569 GATAACCTTGCATGTACGCCT 58.438 47.619 0.00 0.00 0.00 5.52
6448 8110 1.260561 CGATAACCTTGCATGTACGCC 59.739 52.381 0.00 0.00 0.00 5.68
6449 8111 2.034001 GTCGATAACCTTGCATGTACGC 60.034 50.000 0.00 0.00 0.00 4.42
6450 8112 2.215587 CGTCGATAACCTTGCATGTACG 59.784 50.000 0.00 0.00 0.00 3.67
6451 8113 2.538449 CCGTCGATAACCTTGCATGTAC 59.462 50.000 0.00 0.00 0.00 2.90
6452 8114 2.166870 ACCGTCGATAACCTTGCATGTA 59.833 45.455 0.00 0.00 0.00 2.29
6453 8115 1.066430 ACCGTCGATAACCTTGCATGT 60.066 47.619 0.00 0.00 0.00 3.21
6454 8116 1.651987 ACCGTCGATAACCTTGCATG 58.348 50.000 0.00 0.00 0.00 4.06
6455 8117 2.396590 AACCGTCGATAACCTTGCAT 57.603 45.000 0.00 0.00 0.00 3.96
6456 8118 2.070783 GAAACCGTCGATAACCTTGCA 58.929 47.619 0.00 0.00 0.00 4.08
6457 8119 2.344025 AGAAACCGTCGATAACCTTGC 58.656 47.619 0.00 0.00 0.00 4.01
6458 8120 4.091509 CAGAAGAAACCGTCGATAACCTTG 59.908 45.833 0.00 0.00 0.00 3.61
6459 8121 4.243270 CAGAAGAAACCGTCGATAACCTT 58.757 43.478 0.00 0.00 0.00 3.50
6460 8122 3.257624 ACAGAAGAAACCGTCGATAACCT 59.742 43.478 0.00 0.00 0.00 3.50
6461 8123 3.582780 ACAGAAGAAACCGTCGATAACC 58.417 45.455 0.00 0.00 0.00 2.85
6462 8124 4.483311 AGACAGAAGAAACCGTCGATAAC 58.517 43.478 0.00 0.00 33.56 1.89
6463 8125 4.380233 GGAGACAGAAGAAACCGTCGATAA 60.380 45.833 0.00 0.00 33.56 1.75
6464 8126 3.128242 GGAGACAGAAGAAACCGTCGATA 59.872 47.826 0.00 0.00 33.56 2.92
6465 8127 2.094649 GGAGACAGAAGAAACCGTCGAT 60.095 50.000 0.00 0.00 33.56 3.59
6466 8128 1.268899 GGAGACAGAAGAAACCGTCGA 59.731 52.381 0.00 0.00 33.56 4.20
6467 8129 1.000607 TGGAGACAGAAGAAACCGTCG 60.001 52.381 0.00 0.00 35.01 5.12
6468 8130 2.814280 TGGAGACAGAAGAAACCGTC 57.186 50.000 0.00 0.00 35.01 4.79
6469 8131 3.771577 ATTGGAGACAGAAGAAACCGT 57.228 42.857 0.00 0.00 44.54 4.83
6470 8132 4.320494 CCAAATTGGAGACAGAAGAAACCG 60.320 45.833 6.04 0.00 40.96 4.44
6471 8133 4.559502 GCCAAATTGGAGACAGAAGAAACC 60.560 45.833 17.47 0.00 40.96 3.27
6472 8134 4.279420 AGCCAAATTGGAGACAGAAGAAAC 59.721 41.667 17.47 0.00 40.96 2.78
6473 8135 4.473444 AGCCAAATTGGAGACAGAAGAAA 58.527 39.130 17.47 0.00 40.96 2.52
6474 8136 4.104383 AGCCAAATTGGAGACAGAAGAA 57.896 40.909 17.47 0.00 40.96 2.52
6475 8137 3.795688 AGCCAAATTGGAGACAGAAGA 57.204 42.857 17.47 0.00 40.96 2.87
6476 8138 4.279169 TCAAAGCCAAATTGGAGACAGAAG 59.721 41.667 17.47 0.00 40.96 2.85
6477 8139 4.214310 TCAAAGCCAAATTGGAGACAGAA 58.786 39.130 17.47 0.00 40.96 3.02
6478 8140 3.831323 TCAAAGCCAAATTGGAGACAGA 58.169 40.909 17.47 3.49 40.96 3.41
6479 8141 4.796038 ATCAAAGCCAAATTGGAGACAG 57.204 40.909 17.47 1.00 40.96 3.51
6480 8142 4.706476 CCTATCAAAGCCAAATTGGAGACA 59.294 41.667 17.47 0.00 40.96 3.41
6481 8143 4.098501 CCCTATCAAAGCCAAATTGGAGAC 59.901 45.833 17.47 0.00 40.96 3.36
6482 8144 4.264352 ACCCTATCAAAGCCAAATTGGAGA 60.264 41.667 17.47 7.70 40.96 3.71
6483 8145 4.026052 ACCCTATCAAAGCCAAATTGGAG 58.974 43.478 17.47 1.82 40.96 3.86
6484 8146 3.768757 CACCCTATCAAAGCCAAATTGGA 59.231 43.478 17.47 0.00 40.96 3.53
6485 8147 3.515104 ACACCCTATCAAAGCCAAATTGG 59.485 43.478 7.84 7.84 41.55 3.16
6486 8148 4.806640 ACACCCTATCAAAGCCAAATTG 57.193 40.909 0.00 0.00 0.00 2.32
6487 8149 4.837860 TGAACACCCTATCAAAGCCAAATT 59.162 37.500 0.00 0.00 0.00 1.82
6488 8150 4.415596 TGAACACCCTATCAAAGCCAAAT 58.584 39.130 0.00 0.00 0.00 2.32
6489 8151 3.838565 TGAACACCCTATCAAAGCCAAA 58.161 40.909 0.00 0.00 0.00 3.28
6490 8152 3.517296 TGAACACCCTATCAAAGCCAA 57.483 42.857 0.00 0.00 0.00 4.52
6491 8153 3.737559 ATGAACACCCTATCAAAGCCA 57.262 42.857 0.00 0.00 0.00 4.75
6492 8154 3.429410 GCAATGAACACCCTATCAAAGCC 60.429 47.826 0.00 0.00 0.00 4.35
6493 8155 3.193267 TGCAATGAACACCCTATCAAAGC 59.807 43.478 0.00 0.00 33.01 3.51
6494 8156 5.389859 TTGCAATGAACACCCTATCAAAG 57.610 39.130 0.00 0.00 0.00 2.77
6495 8157 5.798125 TTTGCAATGAACACCCTATCAAA 57.202 34.783 0.00 0.00 0.00 2.69
6496 8158 5.798125 TTTTGCAATGAACACCCTATCAA 57.202 34.783 0.00 0.00 0.00 2.57
6497 8159 5.537188 GTTTTTGCAATGAACACCCTATCA 58.463 37.500 16.81 0.00 0.00 2.15
6498 8160 4.621034 CGTTTTTGCAATGAACACCCTATC 59.379 41.667 19.82 0.00 0.00 2.08
6499 8161 4.555262 CGTTTTTGCAATGAACACCCTAT 58.445 39.130 19.82 0.00 0.00 2.57
6500 8162 3.797184 GCGTTTTTGCAATGAACACCCTA 60.797 43.478 19.82 0.00 34.15 3.53
6501 8163 2.820330 CGTTTTTGCAATGAACACCCT 58.180 42.857 19.82 0.00 0.00 4.34
6502 8164 1.260297 GCGTTTTTGCAATGAACACCC 59.740 47.619 19.82 8.72 34.15 4.61
6503 8165 1.260297 GGCGTTTTTGCAATGAACACC 59.740 47.619 19.82 16.94 36.28 4.16
6504 8166 1.929836 TGGCGTTTTTGCAATGAACAC 59.070 42.857 19.82 13.22 36.28 3.32
6505 8167 1.929836 GTGGCGTTTTTGCAATGAACA 59.070 42.857 19.82 6.15 36.28 3.18
6506 8168 1.929836 TGTGGCGTTTTTGCAATGAAC 59.070 42.857 0.00 8.00 36.28 3.18
6507 8169 1.929836 GTGTGGCGTTTTTGCAATGAA 59.070 42.857 0.00 0.00 36.28 2.57
6508 8170 1.565305 GTGTGGCGTTTTTGCAATGA 58.435 45.000 0.00 0.00 36.28 2.57
6509 8171 0.581053 GGTGTGGCGTTTTTGCAATG 59.419 50.000 0.00 0.00 36.28 2.82
6514 8176 1.276415 CAAGTGGTGTGGCGTTTTTG 58.724 50.000 0.00 0.00 0.00 2.44
6561 8223 0.601558 GGCTCACTGGAACGTGTAGA 59.398 55.000 0.00 0.00 35.21 2.59
6566 8228 0.878961 GAAACGGCTCACTGGAACGT 60.879 55.000 0.00 0.00 38.03 3.99
6595 8258 2.672996 GGCCCACACAACAGCGAT 60.673 61.111 0.00 0.00 0.00 4.58
6599 8262 2.981560 GCGATGGCCCACACAACAG 61.982 63.158 0.00 0.00 0.00 3.16
6602 8265 2.359850 GAGCGATGGCCCACACAA 60.360 61.111 0.00 0.00 41.24 3.33
6633 8296 1.838715 GGGGGAGGAAGGAGTTAAGTC 59.161 57.143 1.31 1.31 0.00 3.01
6634 8297 1.153565 TGGGGGAGGAAGGAGTTAAGT 59.846 52.381 0.00 0.00 0.00 2.24
6635 8298 1.560146 GTGGGGGAGGAAGGAGTTAAG 59.440 57.143 0.00 0.00 0.00 1.85
6636 8299 1.665137 GTGGGGGAGGAAGGAGTTAA 58.335 55.000 0.00 0.00 0.00 2.01
6637 8300 0.253020 GGTGGGGGAGGAAGGAGTTA 60.253 60.000 0.00 0.00 0.00 2.24
6638 8301 1.541620 GGTGGGGGAGGAAGGAGTT 60.542 63.158 0.00 0.00 0.00 3.01
6639 8302 2.125225 GGTGGGGGAGGAAGGAGT 59.875 66.667 0.00 0.00 0.00 3.85
6640 8303 2.124996 TGGTGGGGGAGGAAGGAG 59.875 66.667 0.00 0.00 0.00 3.69
6641 8304 2.204090 GTGGTGGGGGAGGAAGGA 60.204 66.667 0.00 0.00 0.00 3.36
6642 8305 2.204151 AGTGGTGGGGGAGGAAGG 60.204 66.667 0.00 0.00 0.00 3.46
6643 8306 2.301738 GGAGTGGTGGGGGAGGAAG 61.302 68.421 0.00 0.00 0.00 3.46
6644 8307 2.204090 GGAGTGGTGGGGGAGGAA 60.204 66.667 0.00 0.00 0.00 3.36
6645 8308 4.348495 GGGAGTGGTGGGGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
6646 8309 4.354943 AGGGAGTGGTGGGGGAGG 62.355 72.222 0.00 0.00 0.00 4.30
6647 8310 2.689034 GAGGGAGTGGTGGGGGAG 60.689 72.222 0.00 0.00 0.00 4.30
6648 8311 2.431047 ATTGAGGGAGTGGTGGGGGA 62.431 60.000 0.00 0.00 0.00 4.81
6649 8312 1.509548 AATTGAGGGAGTGGTGGGGG 61.510 60.000 0.00 0.00 0.00 5.40
6650 8313 0.034089 GAATTGAGGGAGTGGTGGGG 60.034 60.000 0.00 0.00 0.00 4.96
6651 8314 0.698238 TGAATTGAGGGAGTGGTGGG 59.302 55.000 0.00 0.00 0.00 4.61
6652 8315 2.814805 ATGAATTGAGGGAGTGGTGG 57.185 50.000 0.00 0.00 0.00 4.61
6653 8316 3.194116 CCAAATGAATTGAGGGAGTGGTG 59.806 47.826 0.00 0.00 41.85 4.17
6654 8317 3.434309 CCAAATGAATTGAGGGAGTGGT 58.566 45.455 0.00 0.00 41.85 4.16
6655 8318 2.167075 GCCAAATGAATTGAGGGAGTGG 59.833 50.000 0.00 0.00 41.85 4.00
6656 8319 2.827322 TGCCAAATGAATTGAGGGAGTG 59.173 45.455 0.00 0.00 41.85 3.51
6673 8574 4.254709 AGCAGAGCGTGGTTGCCA 62.255 61.111 0.00 0.00 38.58 4.92
6719 8620 0.110867 CGACAGATAGAGAGAGCGCG 60.111 60.000 0.00 0.00 0.00 6.86
6730 8631 2.713770 GCTCGCCGTCGACAGATA 59.286 61.111 17.16 0.00 40.21 1.98
6731 8632 4.538283 CGCTCGCCGTCGACAGAT 62.538 66.667 17.16 0.00 40.21 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.