Multiple sequence alignment - TraesCS6A01G124300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G124300 chr6A 100.000 5408 0 0 1 5408 98065920 98060513 0.000000e+00 9987
1 TraesCS6A01G124300 chr6A 84.547 1922 283 10 1077 2991 100803086 100805000 0.000000e+00 1892
2 TraesCS6A01G124300 chr6A 81.852 2182 346 25 828 2992 100755253 100757401 0.000000e+00 1790
3 TraesCS6A01G124300 chr6A 76.083 3140 677 59 1037 4133 98982312 98979204 0.000000e+00 1570
4 TraesCS6A01G124300 chr6A 76.231 3067 630 77 1046 4055 98256372 98253348 0.000000e+00 1533
5 TraesCS6A01G124300 chr6A 76.372 2260 467 54 1826 4044 98916379 98914146 0.000000e+00 1153
6 TraesCS6A01G124300 chr6D 91.801 4232 270 30 195 4403 81674634 81670457 0.000000e+00 5821
7 TraesCS6A01G124300 chr6D 84.913 1962 281 11 1036 2991 83540613 83542565 0.000000e+00 1969
8 TraesCS6A01G124300 chr6D 84.862 1962 282 11 1036 2991 83057914 83055962 0.000000e+00 1964
9 TraesCS6A01G124300 chr6D 84.952 1894 275 6 1089 2977 83046806 83044918 0.000000e+00 1910
10 TraesCS6A01G124300 chr6D 75.643 3071 659 68 1037 4055 81763882 81760849 0.000000e+00 1445
11 TraesCS6A01G124300 chr6D 75.187 3079 686 62 1037 4070 81759648 81756603 0.000000e+00 1382
12 TraesCS6A01G124300 chr6D 85.337 341 29 9 4775 5100 81670271 81669937 3.120000e-87 333
13 TraesCS6A01G124300 chr6B 94.431 3591 182 7 703 4280 156376286 156372701 0.000000e+00 5507
14 TraesCS6A01G124300 chr6B 85.008 1941 272 14 1059 2991 158149765 158147836 0.000000e+00 1954
15 TraesCS6A01G124300 chr6B 84.459 1924 278 12 1059 2977 158076713 158074806 0.000000e+00 1877
16 TraesCS6A01G124300 chr6B 75.283 3087 665 74 1090 4121 157109275 157106232 0.000000e+00 1384
17 TraesCS6A01G124300 chr6B 75.033 3008 680 56 1080 4044 156528822 156525843 0.000000e+00 1328
18 TraesCS6A01G124300 chr6B 88.252 1081 77 26 4268 5303 156372188 156371113 0.000000e+00 1247
19 TraesCS6A01G124300 chr6B 92.035 226 16 1 176 401 156376869 156376646 3.140000e-82 316
20 TraesCS6A01G124300 chr6B 83.613 238 20 7 470 702 156376622 156376399 7.100000e-49 206
21 TraesCS6A01G124300 chr7D 71.397 1374 347 37 1075 2422 546129843 546128490 8.740000e-83 318
22 TraesCS6A01G124300 chr7D 71.297 1411 355 40 1075 2457 545660122 545661510 3.140000e-82 316


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G124300 chr6A 98060513 98065920 5407 True 9987.0 9987 100.00000 1 5408 1 chr6A.!!$R1 5407
1 TraesCS6A01G124300 chr6A 100803086 100805000 1914 False 1892.0 1892 84.54700 1077 2991 1 chr6A.!!$F2 1914
2 TraesCS6A01G124300 chr6A 100755253 100757401 2148 False 1790.0 1790 81.85200 828 2992 1 chr6A.!!$F1 2164
3 TraesCS6A01G124300 chr6A 98979204 98982312 3108 True 1570.0 1570 76.08300 1037 4133 1 chr6A.!!$R4 3096
4 TraesCS6A01G124300 chr6A 98253348 98256372 3024 True 1533.0 1533 76.23100 1046 4055 1 chr6A.!!$R2 3009
5 TraesCS6A01G124300 chr6A 98914146 98916379 2233 True 1153.0 1153 76.37200 1826 4044 1 chr6A.!!$R3 2218
6 TraesCS6A01G124300 chr6D 81669937 81674634 4697 True 3077.0 5821 88.56900 195 5100 2 chr6D.!!$R3 4905
7 TraesCS6A01G124300 chr6D 83540613 83542565 1952 False 1969.0 1969 84.91300 1036 2991 1 chr6D.!!$F1 1955
8 TraesCS6A01G124300 chr6D 83055962 83057914 1952 True 1964.0 1964 84.86200 1036 2991 1 chr6D.!!$R2 1955
9 TraesCS6A01G124300 chr6D 83044918 83046806 1888 True 1910.0 1910 84.95200 1089 2977 1 chr6D.!!$R1 1888
10 TraesCS6A01G124300 chr6D 81756603 81763882 7279 True 1413.5 1445 75.41500 1037 4070 2 chr6D.!!$R4 3033
11 TraesCS6A01G124300 chr6B 158147836 158149765 1929 True 1954.0 1954 85.00800 1059 2991 1 chr6B.!!$R4 1932
12 TraesCS6A01G124300 chr6B 158074806 158076713 1907 True 1877.0 1877 84.45900 1059 2977 1 chr6B.!!$R3 1918
13 TraesCS6A01G124300 chr6B 156371113 156376869 5756 True 1819.0 5507 89.58275 176 5303 4 chr6B.!!$R5 5127
14 TraesCS6A01G124300 chr6B 157106232 157109275 3043 True 1384.0 1384 75.28300 1090 4121 1 chr6B.!!$R2 3031
15 TraesCS6A01G124300 chr6B 156525843 156528822 2979 True 1328.0 1328 75.03300 1080 4044 1 chr6B.!!$R1 2964
16 TraesCS6A01G124300 chr7D 546128490 546129843 1353 True 318.0 318 71.39700 1075 2422 1 chr7D.!!$R1 1347
17 TraesCS6A01G124300 chr7D 545660122 545661510 1388 False 316.0 316 71.29700 1075 2457 1 chr7D.!!$F1 1382

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.040514 TTTGCGCAGGACGTTCATTG 60.041 50.0 11.31 0.0 46.11 2.82 F
88 89 0.094730 GCGCAGGACGTTCATTGTAC 59.905 55.0 0.30 0.0 46.11 2.90 F
887 1029 0.172352 CCTGAGAGCGACCTGAGAAC 59.828 60.0 0.00 0.0 0.00 3.01 F
1911 2090 0.034767 TGGAGGAGCTGCATTTGGAG 60.035 55.0 8.35 0.0 36.50 3.86 F
2577 6999 0.180406 AGTCGGACAAAACTGCACCT 59.820 50.0 11.27 0.0 0.00 4.00 F
2786 7211 0.445436 GCAATCAGCAACCTCACGAG 59.555 55.0 0.00 0.0 44.79 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1241 1407 0.944311 TCGAGAAGCCAGCGAAACAC 60.944 55.000 0.0 0.0 0.0 3.32 R
1293 1459 1.684734 GAGGAGGCCGGTGAGGTTA 60.685 63.158 1.9 0.0 43.7 2.85 R
2577 6999 1.699634 ACAGGCAGCTCAAAGACCTTA 59.300 47.619 0.0 0.0 0.0 2.69 R
2998 7424 2.039084 GGGTGATCAGAGGTGTTTCAGT 59.961 50.000 0.0 0.0 0.0 3.41 R
4289 9268 0.034896 GTGTTGCGAAGAGGGGAAGA 59.965 55.000 0.0 0.0 0.0 2.87 R
4580 9570 0.328258 AGCCGTTTTGCAGGTCCTAT 59.672 50.000 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.435586 GACCACATCAGCAGCGCT 60.436 61.111 2.64 2.64 40.77 5.92
37 38 3.341823 CTGGATTAGCTGTCTGCAAAGT 58.658 45.455 0.00 0.00 45.94 2.66
38 39 4.507710 CTGGATTAGCTGTCTGCAAAGTA 58.492 43.478 0.00 0.00 45.94 2.24
39 40 4.905429 TGGATTAGCTGTCTGCAAAGTAA 58.095 39.130 0.00 0.00 45.94 2.24
40 41 5.312895 TGGATTAGCTGTCTGCAAAGTAAA 58.687 37.500 0.00 0.00 45.94 2.01
41 42 5.767665 TGGATTAGCTGTCTGCAAAGTAAAA 59.232 36.000 0.00 0.00 45.94 1.52
42 43 6.264292 TGGATTAGCTGTCTGCAAAGTAAAAA 59.736 34.615 0.00 0.00 45.94 1.94
61 62 2.618442 AAAAATTGGTGTGGTGCTGG 57.382 45.000 0.00 0.00 0.00 4.85
62 63 0.106521 AAAATTGGTGTGGTGCTGGC 59.893 50.000 0.00 0.00 0.00 4.85
63 64 1.757423 AAATTGGTGTGGTGCTGGCC 61.757 55.000 0.00 0.00 0.00 5.36
64 65 4.912395 TTGGTGTGGTGCTGGCCC 62.912 66.667 0.00 0.00 0.00 5.80
66 67 4.684134 GGTGTGGTGCTGGCCCAT 62.684 66.667 0.00 0.00 33.76 4.00
67 68 2.601367 GTGTGGTGCTGGCCCATT 60.601 61.111 0.00 0.00 33.76 3.16
68 69 2.200930 TGTGGTGCTGGCCCATTT 59.799 55.556 0.00 0.00 33.76 2.32
69 70 2.208619 TGTGGTGCTGGCCCATTTG 61.209 57.895 0.00 0.00 33.76 2.32
70 71 3.312718 TGGTGCTGGCCCATTTGC 61.313 61.111 0.00 0.00 0.00 3.68
71 72 4.440127 GGTGCTGGCCCATTTGCG 62.440 66.667 0.00 0.00 0.00 4.85
74 75 4.807039 GCTGGCCCATTTGCGCAG 62.807 66.667 11.31 0.00 34.59 5.18
75 76 4.137872 CTGGCCCATTTGCGCAGG 62.138 66.667 11.31 9.96 0.00 4.85
76 77 4.675161 TGGCCCATTTGCGCAGGA 62.675 61.111 16.91 7.78 0.00 3.86
77 78 4.133796 GGCCCATTTGCGCAGGAC 62.134 66.667 16.91 10.61 0.00 3.85
79 80 3.055719 CCCATTTGCGCAGGACGT 61.056 61.111 15.29 0.00 46.11 4.34
80 81 2.625823 CCCATTTGCGCAGGACGTT 61.626 57.895 15.29 0.00 46.11 3.99
81 82 1.154225 CCATTTGCGCAGGACGTTC 60.154 57.895 11.31 0.00 46.11 3.95
82 83 1.573932 CATTTGCGCAGGACGTTCA 59.426 52.632 11.31 0.00 46.11 3.18
83 84 0.168788 CATTTGCGCAGGACGTTCAT 59.831 50.000 11.31 0.00 46.11 2.57
84 85 0.881118 ATTTGCGCAGGACGTTCATT 59.119 45.000 11.31 0.00 46.11 2.57
85 86 0.040514 TTTGCGCAGGACGTTCATTG 60.041 50.000 11.31 0.00 46.11 2.82
86 87 1.163420 TTGCGCAGGACGTTCATTGT 61.163 50.000 11.31 0.00 46.11 2.71
87 88 0.319986 TGCGCAGGACGTTCATTGTA 60.320 50.000 5.66 0.00 46.11 2.41
88 89 0.094730 GCGCAGGACGTTCATTGTAC 59.905 55.000 0.30 0.00 46.11 2.90
89 90 0.719465 CGCAGGACGTTCATTGTACC 59.281 55.000 0.00 0.00 36.87 3.34
90 91 0.719465 GCAGGACGTTCATTGTACCG 59.281 55.000 0.00 0.00 0.00 4.02
91 92 1.670674 GCAGGACGTTCATTGTACCGA 60.671 52.381 0.00 0.00 0.00 4.69
92 93 1.990563 CAGGACGTTCATTGTACCGAC 59.009 52.381 0.00 0.00 0.00 4.79
93 94 1.067354 AGGACGTTCATTGTACCGACC 60.067 52.381 0.00 0.00 35.81 4.79
94 95 0.986992 GACGTTCATTGTACCGACCG 59.013 55.000 0.00 0.00 0.00 4.79
95 96 1.010419 ACGTTCATTGTACCGACCGC 61.010 55.000 0.00 0.00 0.00 5.68
96 97 1.705727 GTTCATTGTACCGACCGCG 59.294 57.895 0.00 0.00 37.24 6.46
97 98 0.733566 GTTCATTGTACCGACCGCGA 60.734 55.000 8.23 0.00 40.82 5.87
98 99 0.733566 TTCATTGTACCGACCGCGAC 60.734 55.000 8.23 0.00 40.82 5.19
99 100 1.153901 CATTGTACCGACCGCGACT 60.154 57.895 8.23 0.00 40.82 4.18
100 101 1.153901 ATTGTACCGACCGCGACTG 60.154 57.895 8.23 0.00 40.82 3.51
101 102 2.552585 ATTGTACCGACCGCGACTGG 62.553 60.000 8.23 8.47 40.82 4.00
103 104 3.740397 TACCGACCGCGACTGGTG 61.740 66.667 21.25 1.60 44.01 4.17
105 106 4.129737 CCGACCGCGACTGGTGAT 62.130 66.667 8.23 0.00 44.01 3.06
106 107 2.880879 CGACCGCGACTGGTGATG 60.881 66.667 8.23 0.00 44.01 3.07
107 108 2.261671 GACCGCGACTGGTGATGT 59.738 61.111 8.23 0.00 44.01 3.06
108 109 1.509463 GACCGCGACTGGTGATGTA 59.491 57.895 8.23 0.00 44.01 2.29
109 110 0.525668 GACCGCGACTGGTGATGTAG 60.526 60.000 8.23 0.00 44.01 2.74
110 111 0.963856 ACCGCGACTGGTGATGTAGA 60.964 55.000 8.23 0.00 41.85 2.59
111 112 0.248661 CCGCGACTGGTGATGTAGAG 60.249 60.000 8.23 0.00 0.00 2.43
112 113 0.867753 CGCGACTGGTGATGTAGAGC 60.868 60.000 0.00 0.00 0.00 4.09
113 114 0.528684 GCGACTGGTGATGTAGAGCC 60.529 60.000 0.00 0.00 0.00 4.70
114 115 0.817654 CGACTGGTGATGTAGAGCCA 59.182 55.000 0.00 0.00 0.00 4.75
115 116 1.469940 CGACTGGTGATGTAGAGCCAC 60.470 57.143 0.00 0.00 0.00 5.01
116 117 0.532573 ACTGGTGATGTAGAGCCACG 59.467 55.000 0.00 0.00 0.00 4.94
117 118 0.817654 CTGGTGATGTAGAGCCACGA 59.182 55.000 0.00 0.00 0.00 4.35
118 119 1.204704 CTGGTGATGTAGAGCCACGAA 59.795 52.381 0.00 0.00 0.00 3.85
119 120 1.621317 TGGTGATGTAGAGCCACGAAA 59.379 47.619 0.00 0.00 0.00 3.46
120 121 2.000447 GGTGATGTAGAGCCACGAAAC 59.000 52.381 0.00 0.00 0.00 2.78
121 122 2.611971 GGTGATGTAGAGCCACGAAACA 60.612 50.000 0.00 0.00 0.00 2.83
122 123 3.064207 GTGATGTAGAGCCACGAAACAA 58.936 45.455 0.00 0.00 0.00 2.83
123 124 3.496884 GTGATGTAGAGCCACGAAACAAA 59.503 43.478 0.00 0.00 0.00 2.83
124 125 3.745975 TGATGTAGAGCCACGAAACAAAG 59.254 43.478 0.00 0.00 0.00 2.77
125 126 3.462483 TGTAGAGCCACGAAACAAAGA 57.538 42.857 0.00 0.00 0.00 2.52
126 127 3.799366 TGTAGAGCCACGAAACAAAGAA 58.201 40.909 0.00 0.00 0.00 2.52
127 128 3.807622 TGTAGAGCCACGAAACAAAGAAG 59.192 43.478 0.00 0.00 0.00 2.85
128 129 1.604278 AGAGCCACGAAACAAAGAAGC 59.396 47.619 0.00 0.00 0.00 3.86
129 130 1.333619 GAGCCACGAAACAAAGAAGCA 59.666 47.619 0.00 0.00 0.00 3.91
130 131 1.748493 AGCCACGAAACAAAGAAGCAA 59.252 42.857 0.00 0.00 0.00 3.91
131 132 1.852280 GCCACGAAACAAAGAAGCAAC 59.148 47.619 0.00 0.00 0.00 4.17
132 133 2.479560 GCCACGAAACAAAGAAGCAACT 60.480 45.455 0.00 0.00 0.00 3.16
133 134 3.108144 CCACGAAACAAAGAAGCAACTG 58.892 45.455 0.00 0.00 0.00 3.16
134 135 3.108144 CACGAAACAAAGAAGCAACTGG 58.892 45.455 0.00 0.00 0.00 4.00
135 136 2.752903 ACGAAACAAAGAAGCAACTGGT 59.247 40.909 0.00 0.00 0.00 4.00
136 137 3.181500 ACGAAACAAAGAAGCAACTGGTC 60.181 43.478 0.00 0.00 0.00 4.02
137 138 3.706698 GAAACAAAGAAGCAACTGGTCC 58.293 45.455 0.00 0.00 0.00 4.46
138 139 2.435372 ACAAAGAAGCAACTGGTCCA 57.565 45.000 0.00 0.00 0.00 4.02
139 140 2.733956 ACAAAGAAGCAACTGGTCCAA 58.266 42.857 0.00 0.00 0.00 3.53
140 141 3.299503 ACAAAGAAGCAACTGGTCCAAT 58.700 40.909 0.00 0.00 0.00 3.16
141 142 3.706086 ACAAAGAAGCAACTGGTCCAATT 59.294 39.130 0.00 0.00 0.00 2.32
142 143 4.162131 ACAAAGAAGCAACTGGTCCAATTT 59.838 37.500 0.00 0.00 0.00 1.82
143 144 4.326504 AAGAAGCAACTGGTCCAATTTG 57.673 40.909 8.09 8.09 0.00 2.32
144 145 3.565307 AGAAGCAACTGGTCCAATTTGA 58.435 40.909 14.55 0.00 0.00 2.69
145 146 3.960102 AGAAGCAACTGGTCCAATTTGAA 59.040 39.130 14.55 0.00 0.00 2.69
146 147 4.405358 AGAAGCAACTGGTCCAATTTGAAA 59.595 37.500 14.55 0.00 0.00 2.69
147 148 4.058721 AGCAACTGGTCCAATTTGAAAC 57.941 40.909 14.55 0.00 0.00 2.78
148 149 3.130633 GCAACTGGTCCAATTTGAAACC 58.869 45.455 14.55 11.77 0.00 3.27
149 150 3.431486 GCAACTGGTCCAATTTGAAACCA 60.431 43.478 17.40 17.40 39.42 3.67
154 155 5.017294 TGGTCCAATTTGAAACCAGAAAC 57.983 39.130 15.51 0.00 36.88 2.78
155 156 4.467795 TGGTCCAATTTGAAACCAGAAACA 59.532 37.500 15.51 0.00 36.88 2.83
156 157 4.808895 GGTCCAATTTGAAACCAGAAACAC 59.191 41.667 13.12 0.00 0.00 3.32
157 158 5.395214 GGTCCAATTTGAAACCAGAAACACT 60.395 40.000 13.12 0.00 0.00 3.55
158 159 5.748630 GTCCAATTTGAAACCAGAAACACTC 59.251 40.000 0.00 0.00 0.00 3.51
159 160 5.049828 CCAATTTGAAACCAGAAACACTCC 58.950 41.667 0.00 0.00 0.00 3.85
160 161 5.163416 CCAATTTGAAACCAGAAACACTCCT 60.163 40.000 0.00 0.00 0.00 3.69
161 162 5.774498 ATTTGAAACCAGAAACACTCCTC 57.226 39.130 0.00 0.00 0.00 3.71
162 163 4.503714 TTGAAACCAGAAACACTCCTCT 57.496 40.909 0.00 0.00 0.00 3.69
163 164 4.503714 TGAAACCAGAAACACTCCTCTT 57.496 40.909 0.00 0.00 0.00 2.85
164 165 4.451900 TGAAACCAGAAACACTCCTCTTC 58.548 43.478 0.00 0.00 0.00 2.87
165 166 3.493767 AACCAGAAACACTCCTCTTCC 57.506 47.619 0.00 0.00 0.00 3.46
166 167 2.408565 ACCAGAAACACTCCTCTTCCA 58.591 47.619 0.00 0.00 0.00 3.53
167 168 2.982488 ACCAGAAACACTCCTCTTCCAT 59.018 45.455 0.00 0.00 0.00 3.41
168 169 3.008485 ACCAGAAACACTCCTCTTCCATC 59.992 47.826 0.00 0.00 0.00 3.51
169 170 3.604582 CAGAAACACTCCTCTTCCATCC 58.395 50.000 0.00 0.00 0.00 3.51
170 171 3.008375 CAGAAACACTCCTCTTCCATCCA 59.992 47.826 0.00 0.00 0.00 3.41
171 172 3.848975 AGAAACACTCCTCTTCCATCCAT 59.151 43.478 0.00 0.00 0.00 3.41
172 173 5.032846 AGAAACACTCCTCTTCCATCCATA 58.967 41.667 0.00 0.00 0.00 2.74
173 174 5.669447 AGAAACACTCCTCTTCCATCCATAT 59.331 40.000 0.00 0.00 0.00 1.78
174 175 5.983333 AACACTCCTCTTCCATCCATATT 57.017 39.130 0.00 0.00 0.00 1.28
282 283 1.199789 TCCAAAATCATGCTCACACGC 59.800 47.619 0.00 0.00 0.00 5.34
379 381 0.393537 CCATGCAGTTCCCTCTGGAC 60.394 60.000 0.00 0.00 41.57 4.02
408 410 3.595173 CCTCACCGATCACACATTGTAA 58.405 45.455 0.00 0.00 0.00 2.41
410 412 4.142902 CCTCACCGATCACACATTGTAAAC 60.143 45.833 0.00 0.00 0.00 2.01
429 431 1.878522 CGGTTTGGATCTCTCCGCG 60.879 63.158 0.00 0.00 45.37 6.46
439 441 0.944311 TCTCTCCGCGACAAACAAGC 60.944 55.000 8.23 0.00 0.00 4.01
441 443 2.966309 CTCCGCGACAAACAAGCCC 61.966 63.158 8.23 0.00 0.00 5.19
450 452 2.623416 GACAAACAAGCCCTTTACTGCT 59.377 45.455 0.00 0.00 40.17 4.24
454 456 1.251251 CAAGCCCTTTACTGCTGCTT 58.749 50.000 0.00 0.00 42.62 3.91
521 528 6.108687 TCTGTCACCAAATAATACAGCAGAG 58.891 40.000 0.00 0.00 37.94 3.35
526 533 4.096984 ACCAAATAATACAGCAGAGCAAGC 59.903 41.667 0.00 0.00 0.00 4.01
554 561 0.747255 TCCAGTTAGGAGAGCGATGC 59.253 55.000 0.00 0.00 43.07 3.91
575 582 6.811253 TGCCAGATCAAGTAAATTAAACGT 57.189 33.333 0.00 0.00 0.00 3.99
580 587 8.450964 CCAGATCAAGTAAATTAAACGTGTGAT 58.549 33.333 0.00 6.90 0.00 3.06
589 596 9.623687 GTAAATTAAACGTGTGATATAACGGAC 57.376 33.333 9.18 0.00 43.96 4.79
593 600 4.395959 ACGTGTGATATAACGGACCATT 57.604 40.909 9.18 0.00 43.96 3.16
615 626 7.201767 CCATTAAGGACTTGATCAAGAATGACC 60.202 40.741 36.15 26.79 39.24 4.02
625 636 6.216569 TGATCAAGAATGACCGCTAAGTATC 58.783 40.000 0.00 0.00 38.69 2.24
629 640 4.694339 AGAATGACCGCTAAGTATCAACC 58.306 43.478 0.00 0.00 0.00 3.77
652 670 2.703007 ACCAGGATAGGAGAAGTGATGC 59.297 50.000 0.00 0.00 0.00 3.91
693 716 3.490896 CGCGTGCAGTAACAGATCATTAT 59.509 43.478 0.00 0.00 0.00 1.28
694 717 4.679654 CGCGTGCAGTAACAGATCATTATA 59.320 41.667 0.00 0.00 0.00 0.98
695 718 5.174943 CGCGTGCAGTAACAGATCATTATAA 59.825 40.000 0.00 0.00 0.00 0.98
696 719 6.584954 GCGTGCAGTAACAGATCATTATAAG 58.415 40.000 0.00 0.00 0.00 1.73
697 720 6.201044 GCGTGCAGTAACAGATCATTATAAGT 59.799 38.462 0.00 0.00 0.00 2.24
698 721 7.381408 GCGTGCAGTAACAGATCATTATAAGTA 59.619 37.037 0.00 0.00 0.00 2.24
700 723 9.751542 GTGCAGTAACAGATCATTATAAGTACT 57.248 33.333 0.00 0.00 0.00 2.73
732 865 4.712051 TCATGGATGCCTGCTAACTATT 57.288 40.909 0.00 0.00 0.00 1.73
738 871 4.211374 GGATGCCTGCTAACTATTAACACG 59.789 45.833 0.00 0.00 0.00 4.49
744 877 5.277345 CCTGCTAACTATTAACACGGCAATC 60.277 44.000 0.00 0.00 0.00 2.67
753 886 0.608856 ACACGGCAATCCATGAGCAA 60.609 50.000 0.00 0.00 0.00 3.91
805 947 3.488384 GCGAAAATGTCAAGGTGTGAACA 60.488 43.478 0.00 0.00 38.23 3.18
887 1029 0.172352 CCTGAGAGCGACCTGAGAAC 59.828 60.000 0.00 0.00 0.00 3.01
1028 1170 4.440127 GCCACGCCATTGCCCAAG 62.440 66.667 0.00 0.00 0.00 3.61
1069 1226 3.123620 CGCTCTTGCTGCTGGTCC 61.124 66.667 0.00 0.00 36.97 4.46
1070 1227 2.350514 GCTCTTGCTGCTGGTCCT 59.649 61.111 0.00 0.00 36.03 3.85
1071 1228 1.744741 GCTCTTGCTGCTGGTCCTC 60.745 63.158 0.00 0.00 36.03 3.71
1072 1229 1.447489 CTCTTGCTGCTGGTCCTCG 60.447 63.158 0.00 0.00 0.00 4.63
1073 1230 2.164865 CTCTTGCTGCTGGTCCTCGT 62.165 60.000 0.00 0.00 0.00 4.18
1241 1407 4.838152 CGATGGGGCGGTCACTGG 62.838 72.222 0.00 0.00 0.00 4.00
1272 1438 0.972983 CTTCTCGAGGCCTCAAGGGA 60.973 60.000 31.67 19.12 37.23 4.20
1293 1459 4.779733 ATCTCGCCGTCCCTGGGT 62.780 66.667 13.56 0.00 0.00 4.51
1677 1843 1.291132 GGCTCAGTAATTGCTCCGTC 58.709 55.000 0.00 0.00 0.00 4.79
1681 1847 1.134367 TCAGTAATTGCTCCGTCCTCG 59.866 52.381 0.00 0.00 0.00 4.63
1814 1992 1.203758 CAATGGCATCAGCAAGCTCAA 59.796 47.619 0.00 0.00 44.61 3.02
1815 1993 1.103803 ATGGCATCAGCAAGCTCAAG 58.896 50.000 0.00 0.00 44.61 3.02
1911 2090 0.034767 TGGAGGAGCTGCATTTGGAG 60.035 55.000 8.35 0.00 36.50 3.86
2131 2310 1.753649 TGACTGCACTGAGGCTATCTC 59.246 52.381 0.00 0.00 42.74 2.75
2218 2397 7.562454 TCACTTGTTAAAAACTCCCTTACAG 57.438 36.000 0.00 0.00 0.00 2.74
2316 2495 1.211457 GAGACCATGCCAGAGGATGTT 59.789 52.381 0.00 0.00 0.00 2.71
2320 2499 1.224075 CATGCCAGAGGATGTTAGCG 58.776 55.000 0.00 0.00 0.00 4.26
2325 2504 2.544685 CCAGAGGATGTTAGCGTTGAG 58.455 52.381 0.00 0.00 0.00 3.02
2497 6907 7.201875 GCCTAAACTTGCTCTTCTATCTAGACT 60.202 40.741 0.00 0.00 30.81 3.24
2562 6972 3.814842 TGGATATGCCAATGCTAAAGTCG 59.185 43.478 0.00 0.00 45.87 4.18
2577 6999 0.180406 AGTCGGACAAAACTGCACCT 59.820 50.000 11.27 0.00 0.00 4.00
2667 7092 9.947189 TTTCCTAAAGTACTGAATCTAGGGATA 57.053 33.333 0.00 0.00 0.00 2.59
2773 7198 2.437281 GGAGAGATCCCAGAAGCAATCA 59.563 50.000 0.00 0.00 0.00 2.57
2786 7211 0.445436 GCAATCAGCAACCTCACGAG 59.555 55.000 0.00 0.00 44.79 4.18
2972 7398 2.468831 CAACCCAAAATTGTGTGGTCG 58.531 47.619 8.68 0.00 32.60 4.79
2992 7418 3.753797 TCGTATGCTTGTAAACCATTGCA 59.246 39.130 0.00 0.00 37.32 4.08
2998 7424 3.552684 GCTTGTAAACCATTGCAGCTCAA 60.553 43.478 0.00 1.85 39.32 3.02
3495 7946 4.125703 GCATACAGGGAGATTCAAGACTG 58.874 47.826 0.00 0.00 0.00 3.51
3555 8006 0.465460 GGCTTCACAACAGGGACACA 60.465 55.000 0.00 0.00 0.00 3.72
3765 8216 1.800586 CCCAACAGAACTCATGTGACG 59.199 52.381 0.94 0.00 0.00 4.35
3825 8276 3.890926 GGGCAGGGATGGGTAGCC 61.891 72.222 3.29 3.29 44.48 3.93
3940 8391 2.097110 TGTCAAGTGGGTACAGGAGT 57.903 50.000 0.00 0.00 0.00 3.85
3969 8420 3.575687 CCAAAGGGAAGCTGATTGAAGTT 59.424 43.478 0.00 0.00 35.59 2.66
3981 8432 4.002982 TGATTGAAGTTCTGGATCCAACG 58.997 43.478 17.00 5.17 0.00 4.10
4059 8510 2.270352 GTGTCAACCACAATCCTGGA 57.730 50.000 0.00 0.00 43.92 3.86
4083 8534 1.153086 GCCAGCCATACAGGAGGTG 60.153 63.158 0.00 0.00 41.22 4.00
4102 8553 2.673368 GTGGTATCTTTCCTGAACAGCG 59.327 50.000 0.00 0.00 0.00 5.18
4255 8709 6.619801 AGTTCTTTTGTACAGATTGTGACC 57.380 37.500 0.00 0.00 0.00 4.02
4256 8710 6.357367 AGTTCTTTTGTACAGATTGTGACCT 58.643 36.000 0.00 0.00 0.00 3.85
4289 9268 6.653989 ACGGAAATCTTGTAATTCATCTCCT 58.346 36.000 0.00 0.00 0.00 3.69
4302 9281 1.686052 CATCTCCTCTTCCCCTCTTCG 59.314 57.143 0.00 0.00 0.00 3.79
4335 9316 5.586243 ACTGTGTGCCATGAGTAATGATAAC 59.414 40.000 0.00 0.00 38.72 1.89
4336 9317 5.495640 TGTGTGCCATGAGTAATGATAACA 58.504 37.500 0.00 0.00 38.72 2.41
4360 9341 0.931005 GTTGCTCGGTTCATCGATCC 59.069 55.000 0.00 0.00 38.55 3.36
4449 9431 2.526888 AGGAGACAATCGTAGGGTCA 57.473 50.000 0.00 0.00 34.04 4.02
4470 9452 2.981400 CGTGGCGGAAACAAAAGTAT 57.019 45.000 0.00 0.00 0.00 2.12
4477 9459 6.307077 GTGGCGGAAACAAAAGTATTGAATAC 59.693 38.462 7.23 7.23 35.99 1.89
4481 9463 9.615295 GCGGAAACAAAAGTATTGAATACTAAA 57.385 29.630 17.39 0.00 44.94 1.85
4499 9488 8.795842 ATACTAAATCAACACGGGTAAAATCA 57.204 30.769 0.00 0.00 0.00 2.57
4501 9490 7.758495 ACTAAATCAACACGGGTAAAATCATC 58.242 34.615 0.00 0.00 0.00 2.92
4503 9492 6.582677 AATCAACACGGGTAAAATCATCAA 57.417 33.333 0.00 0.00 0.00 2.57
4510 9499 3.443681 CGGGTAAAATCATCAAGTTGGCT 59.556 43.478 2.34 0.00 0.00 4.75
4527 9516 3.278574 TGGCTAATTCGATGGTCCAAAG 58.721 45.455 0.00 0.00 0.00 2.77
4540 9530 0.776810 TCCAAAGGTGGGATGAGCAA 59.223 50.000 0.00 0.00 46.01 3.91
4541 9531 1.146774 TCCAAAGGTGGGATGAGCAAA 59.853 47.619 0.00 0.00 46.01 3.68
4549 9539 2.562298 GTGGGATGAGCAAACAAATGGA 59.438 45.455 0.00 0.00 0.00 3.41
4552 9542 3.489738 GGGATGAGCAAACAAATGGATCG 60.490 47.826 0.00 0.00 0.00 3.69
4571 9561 2.542178 TCGAGAACATCACCACAAAACG 59.458 45.455 0.00 0.00 0.00 3.60
4574 9564 3.486383 AGAACATCACCACAAAACGGAT 58.514 40.909 0.00 0.00 0.00 4.18
4580 9570 3.024547 TCACCACAAAACGGATTGGAAA 58.975 40.909 7.27 0.00 34.56 3.13
4587 9577 4.461431 ACAAAACGGATTGGAAATAGGACC 59.539 41.667 7.27 0.00 34.56 4.46
4592 9582 3.631250 GGATTGGAAATAGGACCTGCAA 58.369 45.455 3.53 0.00 0.00 4.08
4594 9584 4.466015 GGATTGGAAATAGGACCTGCAAAA 59.534 41.667 3.53 0.00 0.00 2.44
4595 9585 4.864704 TTGGAAATAGGACCTGCAAAAC 57.135 40.909 3.53 0.00 0.00 2.43
4598 9588 1.173913 AATAGGACCTGCAAAACGGC 58.826 50.000 3.53 0.00 0.00 5.68
4616 9606 4.648651 ACGGCTAGTTAGAACACCAAAAT 58.351 39.130 0.00 0.00 0.00 1.82
4636 9626 0.251742 TGCCACCAAATGCTAAGGCT 60.252 50.000 0.00 0.00 42.46 4.58
4647 9637 0.249657 GCTAAGGCTCGACCCATCAG 60.250 60.000 0.00 0.00 40.58 2.90
4664 9654 1.973515 TCAGCAAGTCTCTGTGGTGAT 59.026 47.619 1.67 0.00 44.84 3.06
4675 9665 3.425578 GTGGTGATCTCGTCCACTG 57.574 57.895 16.55 0.00 45.46 3.66
4697 9687 1.808411 AGTCGCAACCTACAATGTGG 58.192 50.000 0.00 0.00 0.00 4.17
4705 9695 4.938832 GCAACCTACAATGTGGTGTGTATA 59.061 41.667 7.96 0.00 36.57 1.47
4706 9696 5.413213 GCAACCTACAATGTGGTGTGTATAA 59.587 40.000 7.96 0.00 36.57 0.98
4707 9697 6.403200 GCAACCTACAATGTGGTGTGTATAAG 60.403 42.308 7.96 0.00 36.57 1.73
4728 9718 6.875972 AAGAGCTAAATCCTGAAACCTAGA 57.124 37.500 0.00 0.00 0.00 2.43
4740 9730 0.178873 AACCTAGAAGGGGCAGACCA 60.179 55.000 0.00 0.00 40.58 4.02
4765 9760 2.106332 GCACCCATACCGAGACCG 59.894 66.667 0.00 0.00 0.00 4.79
4783 9802 1.203065 CGATAACCTACGGCGTTTCC 58.797 55.000 21.24 1.65 0.00 3.13
4850 9869 0.912487 AGGCACCCTTATCACCGGAA 60.912 55.000 9.46 0.00 0.00 4.30
4921 9940 2.730069 CAACGAGCAAACTGAAATGCA 58.270 42.857 0.00 0.00 44.95 3.96
4954 9978 3.678252 GCGGAGTAAAGAGTAAGGAACCC 60.678 52.174 0.00 0.00 0.00 4.11
5218 10262 8.664211 ACCATTTCGGCATTTTTAAACTAAAA 57.336 26.923 0.00 0.00 39.03 1.52
5260 10308 0.817634 TCAACTTGGGCCGACACTTG 60.818 55.000 0.00 0.00 0.00 3.16
5261 10309 2.193536 AACTTGGGCCGACACTTGC 61.194 57.895 0.00 0.00 0.00 4.01
5262 10310 3.726517 CTTGGGCCGACACTTGCG 61.727 66.667 0.00 0.00 0.00 4.85
5263 10311 4.555709 TTGGGCCGACACTTGCGT 62.556 61.111 0.00 0.00 0.00 5.24
5286 10344 1.599542 GACATTGTGAGGCTAATCCGC 59.400 52.381 0.00 0.00 40.77 5.54
5321 10379 3.991051 CCAGCACGACACGACCCT 61.991 66.667 0.00 0.00 0.00 4.34
5322 10380 2.029073 CAGCACGACACGACCCTT 59.971 61.111 0.00 0.00 0.00 3.95
5323 10381 1.594293 CAGCACGACACGACCCTTT 60.594 57.895 0.00 0.00 0.00 3.11
5324 10382 1.145377 AGCACGACACGACCCTTTT 59.855 52.632 0.00 0.00 0.00 2.27
5325 10383 0.390124 AGCACGACACGACCCTTTTA 59.610 50.000 0.00 0.00 0.00 1.52
5326 10384 1.001633 AGCACGACACGACCCTTTTAT 59.998 47.619 0.00 0.00 0.00 1.40
5327 10385 2.231964 AGCACGACACGACCCTTTTATA 59.768 45.455 0.00 0.00 0.00 0.98
5328 10386 2.995258 GCACGACACGACCCTTTTATAA 59.005 45.455 0.00 0.00 0.00 0.98
5329 10387 3.432933 GCACGACACGACCCTTTTATAAA 59.567 43.478 0.00 0.00 0.00 1.40
5330 10388 4.083908 GCACGACACGACCCTTTTATAAAA 60.084 41.667 10.16 10.16 0.00 1.52
5331 10389 5.560567 GCACGACACGACCCTTTTATAAAAA 60.561 40.000 11.62 0.00 0.00 1.94
5332 10390 6.075280 CACGACACGACCCTTTTATAAAAAG 58.925 40.000 11.62 5.91 0.00 2.27
5333 10391 5.179929 ACGACACGACCCTTTTATAAAAAGG 59.820 40.000 19.77 19.77 44.90 3.11
5334 10392 5.381174 ACACGACCCTTTTATAAAAAGGC 57.619 39.130 20.86 12.57 44.17 4.35
5335 10393 5.074804 ACACGACCCTTTTATAAAAAGGCT 58.925 37.500 20.86 11.07 44.17 4.58
5336 10394 6.240145 ACACGACCCTTTTATAAAAAGGCTA 58.760 36.000 20.86 0.00 44.17 3.93
5337 10395 6.149973 ACACGACCCTTTTATAAAAAGGCTAC 59.850 38.462 20.86 13.41 44.17 3.58
5338 10396 6.149807 CACGACCCTTTTATAAAAAGGCTACA 59.850 38.462 20.86 0.00 44.17 2.74
5339 10397 6.888088 ACGACCCTTTTATAAAAAGGCTACAT 59.112 34.615 20.86 5.66 44.17 2.29
5340 10398 7.148137 ACGACCCTTTTATAAAAAGGCTACATG 60.148 37.037 20.86 11.48 44.17 3.21
5341 10399 7.418337 ACCCTTTTATAAAAAGGCTACATGG 57.582 36.000 20.86 11.20 44.17 3.66
5342 10400 6.382859 ACCCTTTTATAAAAAGGCTACATGGG 59.617 38.462 20.86 19.26 44.17 4.00
5343 10401 6.609616 CCCTTTTATAAAAAGGCTACATGGGA 59.390 38.462 20.81 0.00 44.17 4.37
5344 10402 7.290014 CCCTTTTATAAAAAGGCTACATGGGAT 59.710 37.037 20.81 0.00 44.17 3.85
5345 10403 8.143835 CCTTTTATAAAAAGGCTACATGGGATG 58.856 37.037 16.03 0.00 40.17 3.51
5346 10404 8.830915 TTTTATAAAAAGGCTACATGGGATGA 57.169 30.769 8.20 0.00 0.00 2.92
5347 10405 8.463930 TTTATAAAAAGGCTACATGGGATGAG 57.536 34.615 0.00 0.00 0.00 2.90
5348 10406 3.303351 AAAAGGCTACATGGGATGAGG 57.697 47.619 0.00 0.00 0.00 3.86
5349 10407 0.475906 AAGGCTACATGGGATGAGGC 59.524 55.000 0.00 0.00 35.12 4.70
5350 10408 1.073897 GGCTACATGGGATGAGGCC 59.926 63.158 0.00 0.00 41.15 5.19
5351 10409 1.302033 GCTACATGGGATGAGGCCG 60.302 63.158 0.00 0.00 0.00 6.13
5352 10410 1.302033 CTACATGGGATGAGGCCGC 60.302 63.158 0.00 0.00 0.00 6.53
5353 10411 2.738213 CTACATGGGATGAGGCCGCC 62.738 65.000 3.22 0.00 0.00 6.13
5354 10412 4.962836 CATGGGATGAGGCCGCCC 62.963 72.222 16.29 16.29 42.38 6.13
5357 10415 3.249189 GGGATGAGGCCGCCCATA 61.249 66.667 17.70 0.00 41.64 2.74
5358 10416 2.606587 GGGATGAGGCCGCCCATAT 61.607 63.158 17.70 0.00 41.64 1.78
5359 10417 1.377725 GGATGAGGCCGCCCATATG 60.378 63.158 5.55 0.00 0.00 1.78
5360 10418 1.679311 GATGAGGCCGCCCATATGA 59.321 57.895 5.55 0.00 0.00 2.15
5361 10419 0.674895 GATGAGGCCGCCCATATGAC 60.675 60.000 5.55 0.00 0.00 3.06
5362 10420 2.032681 GAGGCCGCCCATATGACC 59.967 66.667 5.55 0.00 0.00 4.02
5363 10421 2.772191 AGGCCGCCCATATGACCA 60.772 61.111 5.55 0.00 0.00 4.02
5364 10422 2.281761 GGCCGCCCATATGACCAG 60.282 66.667 3.65 0.00 0.00 4.00
5365 10423 2.281761 GCCGCCCATATGACCAGG 60.282 66.667 3.65 3.38 0.00 4.45
5366 10424 3.120086 GCCGCCCATATGACCAGGT 62.120 63.158 3.65 0.00 0.00 4.00
5367 10425 1.764571 GCCGCCCATATGACCAGGTA 61.765 60.000 3.65 0.00 0.00 3.08
5368 10426 0.984230 CCGCCCATATGACCAGGTAT 59.016 55.000 3.65 0.00 0.00 2.73
5369 10427 1.339055 CCGCCCATATGACCAGGTATG 60.339 57.143 3.65 0.00 0.00 2.39
5382 10440 4.955811 CCAGGTATGGCAGTAGTTATGA 57.044 45.455 0.00 0.00 40.52 2.15
5383 10441 5.489792 CCAGGTATGGCAGTAGTTATGAT 57.510 43.478 0.00 0.00 40.52 2.45
5384 10442 6.605471 CCAGGTATGGCAGTAGTTATGATA 57.395 41.667 0.00 0.00 40.52 2.15
5385 10443 7.187824 CCAGGTATGGCAGTAGTTATGATAT 57.812 40.000 0.00 0.00 40.52 1.63
5386 10444 8.306313 CCAGGTATGGCAGTAGTTATGATATA 57.694 38.462 0.00 0.00 40.52 0.86
5387 10445 8.198109 CCAGGTATGGCAGTAGTTATGATATAC 58.802 40.741 0.00 0.00 40.52 1.47
5388 10446 8.749354 CAGGTATGGCAGTAGTTATGATATACA 58.251 37.037 0.00 0.00 0.00 2.29
5389 10447 8.972127 AGGTATGGCAGTAGTTATGATATACAG 58.028 37.037 0.00 0.00 0.00 2.74
5390 10448 8.967918 GGTATGGCAGTAGTTATGATATACAGA 58.032 37.037 0.00 0.00 0.00 3.41
5393 10451 8.650143 TGGCAGTAGTTATGATATACAGATCA 57.350 34.615 0.00 0.00 40.08 2.92
5394 10452 8.523658 TGGCAGTAGTTATGATATACAGATCAC 58.476 37.037 0.00 0.00 38.64 3.06
5395 10453 8.523658 GGCAGTAGTTATGATATACAGATCACA 58.476 37.037 0.00 0.00 38.64 3.58
5401 10459 8.316946 AGTTATGATATACAGATCACATGTGGG 58.683 37.037 25.16 14.50 38.64 4.61
5402 10460 6.692849 ATGATATACAGATCACATGTGGGT 57.307 37.500 25.16 18.85 38.64 4.51
5403 10461 6.101650 TGATATACAGATCACATGTGGGTC 57.898 41.667 25.16 21.36 30.75 4.46
5404 10462 3.845781 ATACAGATCACATGTGGGTCC 57.154 47.619 25.16 11.80 32.02 4.46
5405 10463 0.620556 ACAGATCACATGTGGGTCCC 59.379 55.000 25.16 0.00 0.00 4.46
5406 10464 0.620030 CAGATCACATGTGGGTCCCA 59.380 55.000 25.16 6.47 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.435586 AGCGCTGCTGATGTGGTC 60.436 61.111 10.39 0.00 37.57 4.02
16 17 3.341823 ACTTTGCAGACAGCTAATCCAG 58.658 45.455 0.00 0.00 45.94 3.86
17 18 3.423539 ACTTTGCAGACAGCTAATCCA 57.576 42.857 0.00 0.00 45.94 3.41
18 19 5.880054 TTTACTTTGCAGACAGCTAATCC 57.120 39.130 0.00 0.00 45.94 3.01
42 43 1.474855 GCCAGCACCACACCAATTTTT 60.475 47.619 0.00 0.00 0.00 1.94
43 44 0.106521 GCCAGCACCACACCAATTTT 59.893 50.000 0.00 0.00 0.00 1.82
44 45 1.747774 GCCAGCACCACACCAATTT 59.252 52.632 0.00 0.00 0.00 1.82
45 46 2.209315 GGCCAGCACCACACCAATT 61.209 57.895 0.00 0.00 0.00 2.32
46 47 2.601367 GGCCAGCACCACACCAAT 60.601 61.111 0.00 0.00 0.00 3.16
47 48 4.912395 GGGCCAGCACCACACCAA 62.912 66.667 4.39 0.00 0.00 3.67
49 50 4.684134 ATGGGCCAGCACCACACC 62.684 66.667 13.78 0.00 41.58 4.16
50 51 2.209315 AAATGGGCCAGCACCACAC 61.209 57.895 13.78 0.00 41.58 3.82
51 52 2.200930 AAATGGGCCAGCACCACA 59.799 55.556 13.78 0.00 41.58 4.17
52 53 2.658422 CAAATGGGCCAGCACCAC 59.342 61.111 13.78 0.00 41.58 4.16
53 54 3.312718 GCAAATGGGCCAGCACCA 61.313 61.111 13.78 0.00 43.22 4.17
54 55 4.440127 CGCAAATGGGCCAGCACC 62.440 66.667 13.78 0.00 0.00 5.01
62 63 2.527547 GAACGTCCTGCGCAAATGGG 62.528 60.000 13.05 9.65 46.11 4.00
63 64 1.154225 GAACGTCCTGCGCAAATGG 60.154 57.895 13.05 10.09 46.11 3.16
64 65 0.168788 ATGAACGTCCTGCGCAAATG 59.831 50.000 13.05 10.86 46.11 2.32
65 66 0.881118 AATGAACGTCCTGCGCAAAT 59.119 45.000 13.05 0.00 46.11 2.32
66 67 0.040514 CAATGAACGTCCTGCGCAAA 60.041 50.000 13.05 0.00 46.11 3.68
67 68 1.163420 ACAATGAACGTCCTGCGCAA 61.163 50.000 13.05 0.00 46.11 4.85
68 69 0.319986 TACAATGAACGTCCTGCGCA 60.320 50.000 10.98 10.98 46.11 6.09
69 70 0.094730 GTACAATGAACGTCCTGCGC 59.905 55.000 0.00 0.00 46.11 6.09
71 72 0.719465 CGGTACAATGAACGTCCTGC 59.281 55.000 0.00 0.00 0.00 4.85
72 73 1.990563 GTCGGTACAATGAACGTCCTG 59.009 52.381 0.00 0.00 0.00 3.86
73 74 1.067354 GGTCGGTACAATGAACGTCCT 60.067 52.381 0.00 0.00 0.00 3.85
74 75 1.353076 GGTCGGTACAATGAACGTCC 58.647 55.000 0.00 0.00 0.00 4.79
75 76 0.986992 CGGTCGGTACAATGAACGTC 59.013 55.000 10.25 0.00 40.30 4.34
76 77 1.010419 GCGGTCGGTACAATGAACGT 61.010 55.000 17.10 0.00 46.56 3.99
78 79 0.733566 TCGCGGTCGGTACAATGAAC 60.734 55.000 6.13 0.00 36.13 3.18
79 80 0.733566 GTCGCGGTCGGTACAATGAA 60.734 55.000 6.13 0.00 36.13 2.57
80 81 1.153978 GTCGCGGTCGGTACAATGA 60.154 57.895 6.13 0.00 36.13 2.57
81 82 1.153901 AGTCGCGGTCGGTACAATG 60.154 57.895 6.13 0.00 36.13 2.82
82 83 1.153901 CAGTCGCGGTCGGTACAAT 60.154 57.895 6.13 0.00 36.13 2.71
83 84 2.256158 CAGTCGCGGTCGGTACAA 59.744 61.111 6.13 0.00 36.13 2.41
84 85 3.740397 CCAGTCGCGGTCGGTACA 61.740 66.667 6.13 0.00 36.13 2.90
85 86 3.741476 ACCAGTCGCGGTCGGTAC 61.741 66.667 6.13 0.00 32.11 3.34
86 87 3.740397 CACCAGTCGCGGTCGGTA 61.740 66.667 6.13 0.00 37.07 4.02
88 89 4.129737 ATCACCAGTCGCGGTCGG 62.130 66.667 6.13 6.67 37.07 4.79
89 90 2.261172 TACATCACCAGTCGCGGTCG 62.261 60.000 6.13 0.00 37.07 4.79
90 91 0.525668 CTACATCACCAGTCGCGGTC 60.526 60.000 6.13 0.00 37.07 4.79
91 92 0.963856 TCTACATCACCAGTCGCGGT 60.964 55.000 6.13 0.00 41.07 5.68
92 93 0.248661 CTCTACATCACCAGTCGCGG 60.249 60.000 6.13 0.00 0.00 6.46
93 94 0.867753 GCTCTACATCACCAGTCGCG 60.868 60.000 0.00 0.00 0.00 5.87
94 95 0.528684 GGCTCTACATCACCAGTCGC 60.529 60.000 0.00 0.00 0.00 5.19
95 96 0.817654 TGGCTCTACATCACCAGTCG 59.182 55.000 0.00 0.00 0.00 4.18
96 97 1.469940 CGTGGCTCTACATCACCAGTC 60.470 57.143 0.00 0.00 31.46 3.51
97 98 0.532573 CGTGGCTCTACATCACCAGT 59.467 55.000 0.00 0.00 31.46 4.00
98 99 0.817654 TCGTGGCTCTACATCACCAG 59.182 55.000 0.00 0.00 31.46 4.00
99 100 1.262417 TTCGTGGCTCTACATCACCA 58.738 50.000 0.00 0.00 0.00 4.17
100 101 2.000447 GTTTCGTGGCTCTACATCACC 59.000 52.381 0.00 0.00 0.00 4.02
101 102 2.683968 TGTTTCGTGGCTCTACATCAC 58.316 47.619 0.00 0.00 0.00 3.06
102 103 3.394674 TTGTTTCGTGGCTCTACATCA 57.605 42.857 0.00 0.00 0.00 3.07
103 104 3.994392 TCTTTGTTTCGTGGCTCTACATC 59.006 43.478 0.00 0.00 0.00 3.06
104 105 4.002906 TCTTTGTTTCGTGGCTCTACAT 57.997 40.909 0.00 0.00 0.00 2.29
105 106 3.462483 TCTTTGTTTCGTGGCTCTACA 57.538 42.857 0.00 0.00 0.00 2.74
106 107 3.364068 GCTTCTTTGTTTCGTGGCTCTAC 60.364 47.826 0.00 0.00 0.00 2.59
107 108 2.806244 GCTTCTTTGTTTCGTGGCTCTA 59.194 45.455 0.00 0.00 0.00 2.43
108 109 1.604278 GCTTCTTTGTTTCGTGGCTCT 59.396 47.619 0.00 0.00 0.00 4.09
109 110 1.333619 TGCTTCTTTGTTTCGTGGCTC 59.666 47.619 0.00 0.00 0.00 4.70
110 111 1.388547 TGCTTCTTTGTTTCGTGGCT 58.611 45.000 0.00 0.00 0.00 4.75
111 112 1.852280 GTTGCTTCTTTGTTTCGTGGC 59.148 47.619 0.00 0.00 0.00 5.01
112 113 3.108144 CAGTTGCTTCTTTGTTTCGTGG 58.892 45.455 0.00 0.00 0.00 4.94
113 114 3.108144 CCAGTTGCTTCTTTGTTTCGTG 58.892 45.455 0.00 0.00 0.00 4.35
114 115 2.752903 ACCAGTTGCTTCTTTGTTTCGT 59.247 40.909 0.00 0.00 0.00 3.85
115 116 3.363178 GACCAGTTGCTTCTTTGTTTCG 58.637 45.455 0.00 0.00 0.00 3.46
116 117 3.130340 TGGACCAGTTGCTTCTTTGTTTC 59.870 43.478 0.00 0.00 0.00 2.78
117 118 3.096092 TGGACCAGTTGCTTCTTTGTTT 58.904 40.909 0.00 0.00 0.00 2.83
118 119 2.733956 TGGACCAGTTGCTTCTTTGTT 58.266 42.857 0.00 0.00 0.00 2.83
119 120 2.435372 TGGACCAGTTGCTTCTTTGT 57.565 45.000 0.00 0.00 0.00 2.83
120 121 4.326504 AATTGGACCAGTTGCTTCTTTG 57.673 40.909 0.66 0.00 0.00 2.77
121 122 4.405358 TCAAATTGGACCAGTTGCTTCTTT 59.595 37.500 2.54 0.00 0.00 2.52
122 123 3.960102 TCAAATTGGACCAGTTGCTTCTT 59.040 39.130 2.54 0.00 0.00 2.52
123 124 3.565307 TCAAATTGGACCAGTTGCTTCT 58.435 40.909 2.54 0.00 0.00 2.85
124 125 4.320608 TTCAAATTGGACCAGTTGCTTC 57.679 40.909 2.54 0.00 0.00 3.86
125 126 4.441792 GTTTCAAATTGGACCAGTTGCTT 58.558 39.130 2.54 0.00 0.00 3.91
126 127 3.181466 GGTTTCAAATTGGACCAGTTGCT 60.181 43.478 2.54 0.00 32.41 3.91
127 128 3.130633 GGTTTCAAATTGGACCAGTTGC 58.869 45.455 2.54 0.00 32.41 4.17
128 129 4.399004 TGGTTTCAAATTGGACCAGTTG 57.601 40.909 14.86 8.15 37.26 3.16
132 133 4.467795 TGTTTCTGGTTTCAAATTGGACCA 59.532 37.500 16.88 16.88 39.72 4.02
133 134 4.808895 GTGTTTCTGGTTTCAAATTGGACC 59.191 41.667 10.93 10.93 0.00 4.46
134 135 5.660460 AGTGTTTCTGGTTTCAAATTGGAC 58.340 37.500 0.00 0.00 0.00 4.02
135 136 5.163457 GGAGTGTTTCTGGTTTCAAATTGGA 60.163 40.000 0.00 0.00 0.00 3.53
136 137 5.049828 GGAGTGTTTCTGGTTTCAAATTGG 58.950 41.667 0.00 0.00 0.00 3.16
137 138 5.906073 AGGAGTGTTTCTGGTTTCAAATTG 58.094 37.500 0.00 0.00 0.00 2.32
138 139 5.893824 AGAGGAGTGTTTCTGGTTTCAAATT 59.106 36.000 0.00 0.00 0.00 1.82
139 140 5.449553 AGAGGAGTGTTTCTGGTTTCAAAT 58.550 37.500 0.00 0.00 0.00 2.32
140 141 4.855340 AGAGGAGTGTTTCTGGTTTCAAA 58.145 39.130 0.00 0.00 0.00 2.69
141 142 4.503714 AGAGGAGTGTTTCTGGTTTCAA 57.496 40.909 0.00 0.00 0.00 2.69
142 143 4.451900 GAAGAGGAGTGTTTCTGGTTTCA 58.548 43.478 0.00 0.00 0.00 2.69
143 144 3.815962 GGAAGAGGAGTGTTTCTGGTTTC 59.184 47.826 0.00 0.00 0.00 2.78
144 145 3.202151 TGGAAGAGGAGTGTTTCTGGTTT 59.798 43.478 0.00 0.00 0.00 3.27
145 146 2.777692 TGGAAGAGGAGTGTTTCTGGTT 59.222 45.455 0.00 0.00 0.00 3.67
146 147 2.408565 TGGAAGAGGAGTGTTTCTGGT 58.591 47.619 0.00 0.00 0.00 4.00
147 148 3.604582 GATGGAAGAGGAGTGTTTCTGG 58.395 50.000 0.00 0.00 0.00 3.86
148 149 3.008375 TGGATGGAAGAGGAGTGTTTCTG 59.992 47.826 0.00 0.00 0.00 3.02
149 150 3.251484 TGGATGGAAGAGGAGTGTTTCT 58.749 45.455 0.00 0.00 0.00 2.52
150 151 3.703001 TGGATGGAAGAGGAGTGTTTC 57.297 47.619 0.00 0.00 0.00 2.78
151 152 5.983333 ATATGGATGGAAGAGGAGTGTTT 57.017 39.130 0.00 0.00 0.00 2.83
152 153 5.983333 AATATGGATGGAAGAGGAGTGTT 57.017 39.130 0.00 0.00 0.00 3.32
153 154 5.688807 CAAATATGGATGGAAGAGGAGTGT 58.311 41.667 0.00 0.00 0.00 3.55
154 155 4.518211 GCAAATATGGATGGAAGAGGAGTG 59.482 45.833 0.00 0.00 0.00 3.51
155 156 4.166725 TGCAAATATGGATGGAAGAGGAGT 59.833 41.667 0.00 0.00 0.00 3.85
156 157 4.722220 TGCAAATATGGATGGAAGAGGAG 58.278 43.478 0.00 0.00 0.00 3.69
157 158 4.794311 TGCAAATATGGATGGAAGAGGA 57.206 40.909 0.00 0.00 0.00 3.71
158 159 6.479006 TCTATGCAAATATGGATGGAAGAGG 58.521 40.000 0.00 0.00 40.89 3.69
159 160 7.991084 TTCTATGCAAATATGGATGGAAGAG 57.009 36.000 5.30 0.00 45.39 2.85
408 410 0.249398 CGGAGAGATCCAAACCGGTT 59.751 55.000 15.86 15.86 39.92 4.44
410 412 1.521681 GCGGAGAGATCCAAACCGG 60.522 63.158 0.00 0.00 43.15 5.28
429 431 2.623416 AGCAGTAAAGGGCTTGTTTGTC 59.377 45.455 0.00 0.00 36.92 3.18
439 441 2.301346 CCCATAAGCAGCAGTAAAGGG 58.699 52.381 0.00 0.00 0.00 3.95
441 443 2.368439 TGCCCATAAGCAGCAGTAAAG 58.632 47.619 0.00 0.00 38.00 1.85
450 452 0.186630 ATGCATCCTGCCCATAAGCA 59.813 50.000 0.00 0.00 44.23 3.91
454 456 2.240414 CCTGATATGCATCCTGCCCATA 59.760 50.000 0.19 0.00 44.23 2.74
462 464 3.777106 TTCACCTCCTGATATGCATCC 57.223 47.619 0.19 0.00 0.00 3.51
465 467 6.100279 AGAGTAAATTCACCTCCTGATATGCA 59.900 38.462 0.00 0.00 0.00 3.96
467 469 8.206867 TGAAGAGTAAATTCACCTCCTGATATG 58.793 37.037 0.00 0.00 31.86 1.78
521 528 4.816925 CCTAACTGGATTACCTTAGCTTGC 59.183 45.833 0.00 0.00 38.35 4.01
526 533 5.278561 CGCTCTCCTAACTGGATTACCTTAG 60.279 48.000 0.00 0.00 45.16 2.18
545 552 0.829333 ACTTGATCTGGCATCGCTCT 59.171 50.000 0.00 0.00 0.00 4.09
554 561 7.802738 TCACACGTTTAATTTACTTGATCTGG 58.197 34.615 0.00 0.00 0.00 3.86
575 582 6.325545 AGTCCTTAATGGTCCGTTATATCACA 59.674 38.462 4.32 0.00 37.07 3.58
580 587 6.795144 TCAAGTCCTTAATGGTCCGTTATA 57.205 37.500 4.32 0.00 37.07 0.98
586 593 5.745227 TCTTGATCAAGTCCTTAATGGTCC 58.255 41.667 29.80 0.00 39.38 4.46
587 594 7.554118 TCATTCTTGATCAAGTCCTTAATGGTC 59.446 37.037 28.66 0.00 39.38 4.02
589 596 7.201767 GGTCATTCTTGATCAAGTCCTTAATGG 60.202 40.741 28.66 18.49 39.38 3.16
593 600 5.419542 CGGTCATTCTTGATCAAGTCCTTA 58.580 41.667 29.80 11.86 39.38 2.69
615 626 2.550978 CTGGTGGGTTGATACTTAGCG 58.449 52.381 0.00 0.00 0.00 4.26
625 636 1.879575 TCTCCTATCCTGGTGGGTTG 58.120 55.000 0.00 0.00 36.25 3.77
629 640 2.752030 TCACTTCTCCTATCCTGGTGG 58.248 52.381 0.00 0.00 0.00 4.61
652 670 5.666878 CACGCGTTTAGTTTAATTGATCTCG 59.333 40.000 10.22 0.00 0.00 4.04
696 719 6.647067 GGCATCCATGATTAAGTACTGAGTAC 59.353 42.308 14.69 14.69 39.10 2.73
697 720 6.554982 AGGCATCCATGATTAAGTACTGAGTA 59.445 38.462 0.00 0.00 0.00 2.59
698 721 5.367937 AGGCATCCATGATTAAGTACTGAGT 59.632 40.000 0.00 0.00 0.00 3.41
700 723 5.614308 CAGGCATCCATGATTAAGTACTGA 58.386 41.667 0.00 0.00 0.00 3.41
738 871 3.256558 GACTTTTTGCTCATGGATTGCC 58.743 45.455 0.00 0.00 0.00 4.52
744 877 5.222631 GGTAAGTTGACTTTTTGCTCATGG 58.777 41.667 1.20 0.00 37.40 3.66
753 886 2.876550 GCCTGTCGGTAAGTTGACTTTT 59.123 45.455 1.20 0.00 37.40 2.27
805 947 1.227645 CCGGTGCATCATCGTCCAT 60.228 57.895 0.00 0.00 36.10 3.41
887 1029 4.321527 GGCTCCTTTTTGTTTGATCCTCTG 60.322 45.833 0.00 0.00 0.00 3.35
917 1059 1.122019 AGAGGAACGGGACACAAGCT 61.122 55.000 0.00 0.00 0.00 3.74
1069 1226 2.202492 CGGCGAGACCAAGACGAG 60.202 66.667 0.00 0.00 42.33 4.18
1070 1227 3.744719 CCGGCGAGACCAAGACGA 61.745 66.667 9.30 0.00 42.33 4.20
1241 1407 0.944311 TCGAGAAGCCAGCGAAACAC 60.944 55.000 0.00 0.00 0.00 3.32
1272 1438 2.123251 AGGGACGGCGAGATGGAT 60.123 61.111 16.62 0.00 0.00 3.41
1293 1459 1.684734 GAGGAGGCCGGTGAGGTTA 60.685 63.158 1.90 0.00 43.70 2.85
1911 2090 2.684881 CTCCCCTGACATGTTATTGTGC 59.315 50.000 0.00 0.00 0.00 4.57
2131 2310 2.037511 ACTGGCCATGGAATTTGTTGTG 59.962 45.455 18.40 0.00 0.00 3.33
2218 2397 7.271511 AGGATCTGAAGTGTTCTTGTGATATC 58.728 38.462 0.00 0.00 33.64 1.63
2316 2495 3.478857 TTCTCAAAACCCTCAACGCTA 57.521 42.857 0.00 0.00 0.00 4.26
2320 2499 4.398319 TGGAGATTCTCAAAACCCTCAAC 58.602 43.478 15.36 0.00 31.08 3.18
2325 2504 3.441500 ACCTGGAGATTCTCAAAACCC 57.558 47.619 15.36 0.00 31.08 4.11
2562 6972 2.552743 GACCTTAGGTGCAGTTTTGTCC 59.447 50.000 9.39 0.00 35.25 4.02
2577 6999 1.699634 ACAGGCAGCTCAAAGACCTTA 59.300 47.619 0.00 0.00 0.00 2.69
2667 7092 6.319658 CAGGTATCATGCCAGTGAAGTTATTT 59.680 38.462 0.00 0.00 0.00 1.40
2773 7198 2.345244 CAGGCTCGTGAGGTTGCT 59.655 61.111 0.00 0.00 0.00 3.91
2992 7418 2.435805 TCAGAGGTGTTTCAGTTGAGCT 59.564 45.455 0.00 0.00 0.00 4.09
2998 7424 2.039084 GGGTGATCAGAGGTGTTTCAGT 59.961 50.000 0.00 0.00 0.00 3.41
3079 7505 2.353406 CCAGCAAGAAAAGAATGGCCAG 60.353 50.000 13.05 0.00 0.00 4.85
3555 8006 5.704515 CCAGTCAAGAAATGAGTTGTCATCT 59.295 40.000 0.00 0.00 43.04 2.90
3612 8063 3.889538 CGTGGATGTAAGATAGACCCTGA 59.110 47.826 0.00 0.00 0.00 3.86
3765 8216 2.161030 AGAGTACCGACCAACTCAGTC 58.839 52.381 5.38 0.00 43.74 3.51
3825 8276 5.126222 ACTGTACATATCACCTCTCAGTGTG 59.874 44.000 0.00 0.00 38.91 3.82
3940 8391 2.644299 TCAGCTTCCCTTTGGATCTCAA 59.356 45.455 0.00 0.00 41.40 3.02
3959 8410 4.002982 CGTTGGATCCAGAACTTCAATCA 58.997 43.478 15.53 0.00 0.00 2.57
3969 8420 0.173481 CTCGAAGCGTTGGATCCAGA 59.827 55.000 15.53 5.99 0.00 3.86
3981 8432 1.069204 TCATATCCTGTGCCTCGAAGC 59.931 52.381 0.00 0.00 0.00 3.86
4059 8510 0.184451 CCTGTATGGCTGGCCTCATT 59.816 55.000 13.05 0.00 36.94 2.57
4083 8534 2.973945 ACGCTGTTCAGGAAAGATACC 58.026 47.619 1.97 0.00 0.00 2.73
4102 8553 4.759782 TGCTTCTGAAGGTTAGCATCTAC 58.240 43.478 18.38 0.00 38.61 2.59
4200 8654 0.950116 GAGCACAGAACTTGCAGCTT 59.050 50.000 0.00 0.00 42.83 3.74
4255 8709 3.181454 ACAAGATTTCCGTATAGGGCCAG 60.181 47.826 6.18 0.00 41.52 4.85
4256 8710 2.775384 ACAAGATTTCCGTATAGGGCCA 59.225 45.455 6.18 0.00 41.52 5.36
4289 9268 0.034896 GTGTTGCGAAGAGGGGAAGA 59.965 55.000 0.00 0.00 0.00 2.87
4360 9341 6.624423 CACAATTTAGAAGGAGAATGTTGGG 58.376 40.000 0.00 0.00 0.00 4.12
4411 9393 4.228824 TCCTACTAGTAATGGCCGGAATT 58.771 43.478 5.05 6.86 0.00 2.17
4415 9397 2.557490 GTCTCCTACTAGTAATGGCCGG 59.443 54.545 3.76 0.00 0.00 6.13
4416 9398 3.220110 TGTCTCCTACTAGTAATGGCCG 58.780 50.000 3.76 0.00 0.00 6.13
4470 9452 8.618702 TTTACCCGTGTTGATTTAGTATTCAA 57.381 30.769 0.00 0.00 0.00 2.69
4477 9459 7.757526 TGATGATTTTACCCGTGTTGATTTAG 58.242 34.615 0.00 0.00 0.00 1.85
4478 9460 7.689446 TGATGATTTTACCCGTGTTGATTTA 57.311 32.000 0.00 0.00 0.00 1.40
4481 9463 5.710099 ACTTGATGATTTTACCCGTGTTGAT 59.290 36.000 0.00 0.00 0.00 2.57
4482 9464 5.067273 ACTTGATGATTTTACCCGTGTTGA 58.933 37.500 0.00 0.00 0.00 3.18
4483 9465 5.371115 ACTTGATGATTTTACCCGTGTTG 57.629 39.130 0.00 0.00 0.00 3.33
4484 9466 5.278758 CCAACTTGATGATTTTACCCGTGTT 60.279 40.000 0.00 0.00 0.00 3.32
4488 9470 3.443681 AGCCAACTTGATGATTTTACCCG 59.556 43.478 0.00 0.00 0.00 5.28
4499 9488 4.526970 ACCATCGAATTAGCCAACTTGAT 58.473 39.130 0.00 0.00 0.00 2.57
4501 9490 3.065371 GGACCATCGAATTAGCCAACTTG 59.935 47.826 0.00 0.00 0.00 3.16
4503 9492 2.238646 TGGACCATCGAATTAGCCAACT 59.761 45.455 0.00 0.00 0.00 3.16
4527 9516 2.354003 CCATTTGTTTGCTCATCCCACC 60.354 50.000 0.00 0.00 0.00 4.61
4540 9530 4.396166 GGTGATGTTCTCGATCCATTTGTT 59.604 41.667 0.00 0.00 0.00 2.83
4541 9531 3.941483 GGTGATGTTCTCGATCCATTTGT 59.059 43.478 0.00 0.00 0.00 2.83
4549 9539 3.186409 CGTTTTGTGGTGATGTTCTCGAT 59.814 43.478 0.00 0.00 0.00 3.59
4552 9542 2.875933 TCCGTTTTGTGGTGATGTTCTC 59.124 45.455 0.00 0.00 0.00 2.87
4571 9561 3.297134 TGCAGGTCCTATTTCCAATCC 57.703 47.619 0.00 0.00 0.00 3.01
4574 9564 3.254657 CGTTTTGCAGGTCCTATTTCCAA 59.745 43.478 0.00 0.00 0.00 3.53
4580 9570 0.328258 AGCCGTTTTGCAGGTCCTAT 59.672 50.000 0.00 0.00 0.00 2.57
4587 9577 3.496884 TGTTCTAACTAGCCGTTTTGCAG 59.503 43.478 0.00 0.00 37.05 4.41
4592 9582 3.756933 TGGTGTTCTAACTAGCCGTTT 57.243 42.857 0.00 0.00 37.05 3.60
4594 9584 3.756933 TTTGGTGTTCTAACTAGCCGT 57.243 42.857 0.00 0.00 0.00 5.68
4595 9585 5.390613 CAATTTTGGTGTTCTAACTAGCCG 58.609 41.667 0.00 0.00 0.00 5.52
4598 9588 6.149633 GTGGCAATTTTGGTGTTCTAACTAG 58.850 40.000 0.00 0.00 0.00 2.57
4616 9606 0.607620 GCCTTAGCATTTGGTGGCAA 59.392 50.000 6.31 0.00 40.04 4.52
4636 9626 0.532573 GAGACTTGCTGATGGGTCGA 59.467 55.000 0.00 0.00 34.34 4.20
4647 9637 2.615869 GAGATCACCACAGAGACTTGC 58.384 52.381 0.00 0.00 0.00 4.01
4664 9654 1.285950 CGACTTGCAGTGGACGAGA 59.714 57.895 0.00 0.00 0.00 4.04
4675 9665 1.535462 ACATTGTAGGTTGCGACTTGC 59.465 47.619 3.59 0.00 46.70 4.01
4691 9681 7.499232 GGATTTAGCTCTTATACACACCACATT 59.501 37.037 0.00 0.00 0.00 2.71
4697 9687 8.604890 GTTTCAGGATTTAGCTCTTATACACAC 58.395 37.037 0.00 0.00 0.00 3.82
4705 9695 6.875972 TCTAGGTTTCAGGATTTAGCTCTT 57.124 37.500 0.00 0.00 0.00 2.85
4706 9696 6.126911 CCTTCTAGGTTTCAGGATTTAGCTCT 60.127 42.308 0.00 0.00 0.00 4.09
4707 9697 6.052360 CCTTCTAGGTTTCAGGATTTAGCTC 58.948 44.000 0.00 0.00 0.00 4.09
4728 9718 2.134630 CTCTTGCTGGTCTGCCCCTT 62.135 60.000 0.00 0.00 0.00 3.95
4740 9730 1.609783 GGTATGGGTGCCTCTTGCT 59.390 57.895 0.00 0.00 42.00 3.91
4783 9802 0.942962 GAATCTCCTGGCAGCATTCG 59.057 55.000 9.56 0.00 0.00 3.34
4818 9837 1.673168 GGTGCCTCTAAGCCATTGAG 58.327 55.000 0.00 0.00 0.00 3.02
4850 9869 4.427661 GCTGCGCGAGAGGTCTGT 62.428 66.667 12.10 0.00 0.00 3.41
5048 10085 1.298014 GAGACCCCCTGCAACTCTG 59.702 63.158 0.00 0.00 0.00 3.35
5135 10179 0.823460 AAAAGCACGGCCCATATTGG 59.177 50.000 0.00 0.00 37.25 3.16
5193 10237 8.664211 TTTTAGTTTAAAAATGCCGAAATGGT 57.336 26.923 0.00 0.00 35.96 3.55
5218 10262 2.818751 TCGGTCTTATGGGGCATTTT 57.181 45.000 0.00 0.00 0.00 1.82
5222 10266 2.025793 TGATTTTCGGTCTTATGGGGCA 60.026 45.455 0.00 0.00 0.00 5.36
5223 10267 2.650322 TGATTTTCGGTCTTATGGGGC 58.350 47.619 0.00 0.00 0.00 5.80
5224 10268 4.270008 AGTTGATTTTCGGTCTTATGGGG 58.730 43.478 0.00 0.00 0.00 4.96
5260 10308 1.207593 GCCTCACAATGTCACACGC 59.792 57.895 0.00 0.00 0.00 5.34
5261 10309 2.078849 TAGCCTCACAATGTCACACG 57.921 50.000 0.00 0.00 0.00 4.49
5262 10310 3.375299 GGATTAGCCTCACAATGTCACAC 59.625 47.826 0.00 0.00 0.00 3.82
5263 10311 3.609853 GGATTAGCCTCACAATGTCACA 58.390 45.455 0.00 0.00 0.00 3.58
5264 10312 2.609459 CGGATTAGCCTCACAATGTCAC 59.391 50.000 0.00 0.00 0.00 3.67
5269 10327 0.464036 TCGCGGATTAGCCTCACAAT 59.536 50.000 6.13 0.00 0.00 2.71
5304 10362 2.989055 AAAGGGTCGTGTCGTGCTGG 62.989 60.000 0.00 0.00 0.00 4.85
5305 10363 1.157870 AAAAGGGTCGTGTCGTGCTG 61.158 55.000 0.00 0.00 0.00 4.41
5306 10364 0.390124 TAAAAGGGTCGTGTCGTGCT 59.610 50.000 0.00 0.00 0.00 4.40
5307 10365 1.435577 ATAAAAGGGTCGTGTCGTGC 58.564 50.000 0.00 0.00 0.00 5.34
5308 10366 5.594724 TTTTATAAAAGGGTCGTGTCGTG 57.405 39.130 6.54 0.00 0.00 4.35
5309 10367 5.179929 CCTTTTTATAAAAGGGTCGTGTCGT 59.820 40.000 24.17 0.00 42.32 4.34
5310 10368 5.624292 CCTTTTTATAAAAGGGTCGTGTCG 58.376 41.667 24.17 3.54 42.32 4.35
5311 10369 5.396484 GCCTTTTTATAAAAGGGTCGTGTC 58.604 41.667 29.46 14.99 44.40 3.67
5312 10370 5.381174 GCCTTTTTATAAAAGGGTCGTGT 57.619 39.130 29.46 0.00 44.40 4.49
5318 10376 6.609616 TCCCATGTAGCCTTTTTATAAAAGGG 59.390 38.462 26.81 26.81 45.31 3.95
5320 10378 8.912988 TCATCCCATGTAGCCTTTTTATAAAAG 58.087 33.333 10.40 5.19 0.00 2.27
5321 10379 8.830915 TCATCCCATGTAGCCTTTTTATAAAA 57.169 30.769 6.54 6.54 0.00 1.52
5322 10380 7.505585 CCTCATCCCATGTAGCCTTTTTATAAA 59.494 37.037 0.00 0.00 0.00 1.40
5323 10381 7.004086 CCTCATCCCATGTAGCCTTTTTATAA 58.996 38.462 0.00 0.00 0.00 0.98
5324 10382 6.542821 CCTCATCCCATGTAGCCTTTTTATA 58.457 40.000 0.00 0.00 0.00 0.98
5325 10383 5.388654 CCTCATCCCATGTAGCCTTTTTAT 58.611 41.667 0.00 0.00 0.00 1.40
5326 10384 4.792068 CCTCATCCCATGTAGCCTTTTTA 58.208 43.478 0.00 0.00 0.00 1.52
5327 10385 3.635591 CCTCATCCCATGTAGCCTTTTT 58.364 45.455 0.00 0.00 0.00 1.94
5328 10386 2.687914 GCCTCATCCCATGTAGCCTTTT 60.688 50.000 0.00 0.00 0.00 2.27
5329 10387 1.133668 GCCTCATCCCATGTAGCCTTT 60.134 52.381 0.00 0.00 0.00 3.11
5330 10388 0.475906 GCCTCATCCCATGTAGCCTT 59.524 55.000 0.00 0.00 0.00 4.35
5331 10389 1.422161 GGCCTCATCCCATGTAGCCT 61.422 60.000 0.00 0.00 42.35 4.58
5332 10390 1.073897 GGCCTCATCCCATGTAGCC 59.926 63.158 0.00 4.52 40.40 3.93
5333 10391 1.302033 CGGCCTCATCCCATGTAGC 60.302 63.158 0.00 0.00 0.00 3.58
5334 10392 1.302033 GCGGCCTCATCCCATGTAG 60.302 63.158 0.00 0.00 0.00 2.74
5335 10393 2.818169 GGCGGCCTCATCCCATGTA 61.818 63.158 12.87 0.00 0.00 2.29
5336 10394 4.195334 GGCGGCCTCATCCCATGT 62.195 66.667 12.87 0.00 0.00 3.21
5337 10395 4.962836 GGGCGGCCTCATCCCATG 62.963 72.222 22.87 0.00 39.82 3.66
5340 10398 2.606587 ATATGGGCGGCCTCATCCC 61.607 63.158 29.87 7.37 40.47 3.85
5341 10399 1.377725 CATATGGGCGGCCTCATCC 60.378 63.158 29.87 1.69 0.00 3.51
5342 10400 0.674895 GTCATATGGGCGGCCTCATC 60.675 60.000 29.87 10.72 0.00 2.92
5343 10401 1.376466 GTCATATGGGCGGCCTCAT 59.624 57.895 29.87 20.87 0.00 2.90
5344 10402 2.818169 GGTCATATGGGCGGCCTCA 61.818 63.158 29.87 16.90 0.00 3.86
5345 10403 2.032681 GGTCATATGGGCGGCCTC 59.967 66.667 29.87 9.74 0.00 4.70
5346 10404 2.772191 TGGTCATATGGGCGGCCT 60.772 61.111 29.87 16.71 0.00 5.19
5347 10405 2.281761 CTGGTCATATGGGCGGCC 60.282 66.667 23.42 23.42 0.00 6.13
5348 10406 1.764571 TACCTGGTCATATGGGCGGC 61.765 60.000 0.63 0.00 0.00 6.53
5349 10407 0.984230 ATACCTGGTCATATGGGCGG 59.016 55.000 0.63 1.69 0.00 6.13
5350 10408 1.339055 CCATACCTGGTCATATGGGCG 60.339 57.143 16.28 0.00 42.85 6.13
5351 10409 1.614317 GCCATACCTGGTCATATGGGC 60.614 57.143 22.53 15.05 45.51 5.36
5352 10410 1.704628 TGCCATACCTGGTCATATGGG 59.295 52.381 22.53 10.31 45.51 4.00
5354 10412 3.777106 ACTGCCATACCTGGTCATATG 57.223 47.619 0.63 1.35 45.10 1.78
5355 10413 4.493618 ACTACTGCCATACCTGGTCATAT 58.506 43.478 0.63 0.00 45.10 1.78
5356 10414 3.923648 ACTACTGCCATACCTGGTCATA 58.076 45.455 0.63 0.00 45.10 2.15
5357 10415 2.764269 ACTACTGCCATACCTGGTCAT 58.236 47.619 0.63 0.00 45.10 3.06
5358 10416 2.247699 ACTACTGCCATACCTGGTCA 57.752 50.000 0.63 0.00 45.10 4.02
5359 10417 4.344102 TCATAACTACTGCCATACCTGGTC 59.656 45.833 0.63 0.00 45.10 4.02
5360 10418 4.295201 TCATAACTACTGCCATACCTGGT 58.705 43.478 4.05 4.05 45.10 4.00
5361 10419 4.955811 TCATAACTACTGCCATACCTGG 57.044 45.455 0.00 0.00 46.17 4.45
5362 10420 8.749354 TGTATATCATAACTACTGCCATACCTG 58.251 37.037 0.00 0.00 0.00 4.00
5363 10421 8.895141 TGTATATCATAACTACTGCCATACCT 57.105 34.615 0.00 0.00 0.00 3.08
5364 10422 8.967918 TCTGTATATCATAACTACTGCCATACC 58.032 37.037 0.00 0.00 0.00 2.73
5367 10425 9.259832 TGATCTGTATATCATAACTACTGCCAT 57.740 33.333 0.00 0.00 30.92 4.40
5368 10426 8.523658 GTGATCTGTATATCATAACTACTGCCA 58.476 37.037 0.00 0.00 38.13 4.92
5369 10427 8.523658 TGTGATCTGTATATCATAACTACTGCC 58.476 37.037 0.00 0.00 38.13 4.85
5375 10433 8.316946 CCCACATGTGATCTGTATATCATAACT 58.683 37.037 27.46 0.00 38.13 2.24
5376 10434 8.097038 ACCCACATGTGATCTGTATATCATAAC 58.903 37.037 27.46 0.00 38.13 1.89
5377 10435 8.206126 ACCCACATGTGATCTGTATATCATAA 57.794 34.615 27.46 0.00 38.13 1.90
5378 10436 7.093333 GGACCCACATGTGATCTGTATATCATA 60.093 40.741 27.46 0.00 38.13 2.15
5379 10437 6.296087 GGACCCACATGTGATCTGTATATCAT 60.296 42.308 27.46 0.00 38.13 2.45
5380 10438 5.012046 GGACCCACATGTGATCTGTATATCA 59.988 44.000 27.46 0.00 33.48 2.15
5381 10439 5.482908 GGACCCACATGTGATCTGTATATC 58.517 45.833 27.46 9.76 0.00 1.63
5382 10440 4.287067 GGGACCCACATGTGATCTGTATAT 59.713 45.833 27.46 1.34 0.00 0.86
5383 10441 3.646162 GGGACCCACATGTGATCTGTATA 59.354 47.826 27.46 0.00 0.00 1.47
5384 10442 2.439507 GGGACCCACATGTGATCTGTAT 59.560 50.000 27.46 3.95 0.00 2.29
5385 10443 1.837439 GGGACCCACATGTGATCTGTA 59.163 52.381 27.46 0.00 0.00 2.74
5386 10444 0.620556 GGGACCCACATGTGATCTGT 59.379 55.000 27.46 16.98 0.00 3.41
5387 10445 0.620030 TGGGACCCACATGTGATCTG 59.380 55.000 27.46 14.04 0.00 2.90
5388 10446 3.103236 TGGGACCCACATGTGATCT 57.897 52.632 27.46 8.45 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.