Multiple sequence alignment - TraesCS6A01G123900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G123900 chr6A 100.000 3808 0 0 1 3808 97990462 97986655 0.000000e+00 7033.0
1 TraesCS6A01G123900 chr6A 95.646 758 28 4 3052 3808 148741812 148741059 0.000000e+00 1212.0
2 TraesCS6A01G123900 chr6B 91.846 883 60 7 2163 3042 156219738 156218865 0.000000e+00 1221.0
3 TraesCS6A01G123900 chr6B 86.288 722 50 25 571 1260 156221274 156220570 0.000000e+00 739.0
4 TraesCS6A01G123900 chr6B 85.609 542 54 14 3052 3580 283705267 283705797 7.190000e-152 547.0
5 TraesCS6A01G123900 chr6B 91.139 237 12 4 1295 1531 156220482 156220255 2.860000e-81 313.0
6 TraesCS6A01G123900 chr6B 85.890 163 14 3 4 165 132150404 132150558 8.460000e-37 165.0
7 TraesCS6A01G123900 chr2A 95.664 761 29 4 3051 3808 23433701 23434460 0.000000e+00 1219.0
8 TraesCS6A01G123900 chr2A 93.333 165 11 0 1 165 774917416 774917252 1.060000e-60 244.0
9 TraesCS6A01G123900 chr6D 90.962 852 51 10 2154 3000 81590198 81589368 0.000000e+00 1123.0
10 TraesCS6A01G123900 chr6D 91.438 584 22 14 571 1151 81591761 81591203 0.000000e+00 776.0
11 TraesCS6A01G123900 chr6D 93.522 247 14 1 326 572 80054322 80054078 2.160000e-97 366.0
12 TraesCS6A01G123900 chr6D 84.167 360 51 6 2453 2811 81572868 81572514 1.010000e-90 344.0
13 TraesCS6A01G123900 chr6D 91.870 246 8 5 1289 1531 81591171 81590935 2.190000e-87 333.0
14 TraesCS6A01G123900 chr6D 94.697 132 5 2 203 332 81591890 81591759 1.790000e-48 204.0
15 TraesCS6A01G123900 chr6D 83.088 136 17 5 1567 1700 81590929 81590798 6.680000e-23 119.0
16 TraesCS6A01G123900 chr2D 92.377 774 39 13 3045 3808 140936665 140935902 0.000000e+00 1085.0
17 TraesCS6A01G123900 chr2D 80.813 787 110 23 3052 3808 103827918 103827143 2.550000e-161 579.0
18 TraesCS6A01G123900 chr5A 94.118 442 24 2 3052 3491 602653414 602652973 0.000000e+00 671.0
19 TraesCS6A01G123900 chr5A 88.785 321 28 8 3493 3808 602652518 602652201 1.660000e-103 387.0
20 TraesCS6A01G123900 chr4B 81.703 787 106 21 3054 3808 604898819 604898039 4.180000e-174 621.0
21 TraesCS6A01G123900 chr4B 86.679 563 43 12 981 1527 238176361 238176907 2.530000e-166 595.0
22 TraesCS6A01G123900 chr7A 81.586 782 107 22 3052 3808 734469922 734470691 2.510000e-171 612.0
23 TraesCS6A01G123900 chr7A 90.943 265 23 1 332 595 112709209 112709473 4.680000e-94 355.0
24 TraesCS6A01G123900 chr7A 91.515 165 13 1 1 165 552990361 552990524 3.830000e-55 226.0
25 TraesCS6A01G123900 chr7B 80.715 783 108 27 3051 3800 44308435 44309207 1.530000e-158 569.0
26 TraesCS6A01G123900 chr2B 84.066 546 59 16 3052 3580 26570518 26569984 5.680000e-138 501.0
27 TraesCS6A01G123900 chr3D 94.332 247 14 0 330 576 511728397 511728151 2.780000e-101 379.0
28 TraesCS6A01G123900 chr3D 94.286 245 13 1 329 572 523192597 523192353 1.290000e-99 374.0
29 TraesCS6A01G123900 chr3D 87.195 164 8 6 4 165 448295691 448295843 1.410000e-39 174.0
30 TraesCS6A01G123900 chr4D 94.309 246 14 0 330 575 76612185 76611940 9.990000e-101 377.0
31 TraesCS6A01G123900 chr4D 94.606 241 13 0 332 572 30506666 30506426 1.290000e-99 374.0
32 TraesCS6A01G123900 chr5D 93.976 249 14 1 325 573 241278057 241278304 3.590000e-100 375.0
33 TraesCS6A01G123900 chr3A 93.878 245 15 0 330 574 61315646 61315402 1.670000e-98 370.0
34 TraesCS6A01G123900 chr3A 92.337 261 18 2 320 579 550451994 550452253 1.670000e-98 370.0
35 TraesCS6A01G123900 chr3A 87.805 164 7 6 4 165 589561052 589561204 3.020000e-41 180.0
36 TraesCS6A01G123900 chr1D 89.697 165 9 1 1 165 62340349 62340193 1.790000e-48 204.0
37 TraesCS6A01G123900 chr3B 86.335 161 13 3 5 165 807313754 807313603 2.350000e-37 167.0
38 TraesCS6A01G123900 chr3B 97.143 35 1 0 2643 2677 105415159 105415125 4.110000e-05 60.2
39 TraesCS6A01G123900 chrUn 77.978 277 40 13 3547 3808 303894895 303895165 1.830000e-33 154.0
40 TraesCS6A01G123900 chrUn 77.978 277 40 13 3547 3808 434848322 434848052 1.830000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G123900 chr6A 97986655 97990462 3807 True 7033.000000 7033 100.000000 1 3808 1 chr6A.!!$R1 3807
1 TraesCS6A01G123900 chr6A 148741059 148741812 753 True 1212.000000 1212 95.646000 3052 3808 1 chr6A.!!$R2 756
2 TraesCS6A01G123900 chr6B 156218865 156221274 2409 True 757.666667 1221 89.757667 571 3042 3 chr6B.!!$R1 2471
3 TraesCS6A01G123900 chr6B 283705267 283705797 530 False 547.000000 547 85.609000 3052 3580 1 chr6B.!!$F2 528
4 TraesCS6A01G123900 chr2A 23433701 23434460 759 False 1219.000000 1219 95.664000 3051 3808 1 chr2A.!!$F1 757
5 TraesCS6A01G123900 chr6D 81589368 81591890 2522 True 511.000000 1123 90.411000 203 3000 5 chr6D.!!$R3 2797
6 TraesCS6A01G123900 chr2D 140935902 140936665 763 True 1085.000000 1085 92.377000 3045 3808 1 chr2D.!!$R2 763
7 TraesCS6A01G123900 chr2D 103827143 103827918 775 True 579.000000 579 80.813000 3052 3808 1 chr2D.!!$R1 756
8 TraesCS6A01G123900 chr5A 602652201 602653414 1213 True 529.000000 671 91.451500 3052 3808 2 chr5A.!!$R1 756
9 TraesCS6A01G123900 chr4B 604898039 604898819 780 True 621.000000 621 81.703000 3054 3808 1 chr4B.!!$R1 754
10 TraesCS6A01G123900 chr4B 238176361 238176907 546 False 595.000000 595 86.679000 981 1527 1 chr4B.!!$F1 546
11 TraesCS6A01G123900 chr7A 734469922 734470691 769 False 612.000000 612 81.586000 3052 3808 1 chr7A.!!$F3 756
12 TraesCS6A01G123900 chr7B 44308435 44309207 772 False 569.000000 569 80.715000 3051 3800 1 chr7B.!!$F1 749
13 TraesCS6A01G123900 chr2B 26569984 26570518 534 True 501.000000 501 84.066000 3052 3580 1 chr2B.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.030101 CTCGTGAGATTCCTCGCCTC 59.970 60.0 0.00 0.0 44.83 4.70 F
906 917 0.033991 TCAGACTTCCCTCCTCCTCG 60.034 60.0 0.00 0.0 0.00 4.63 F
1373 1467 0.108520 GGAGATGGTGTTTCCGCGTA 60.109 55.0 4.92 0.0 39.52 4.42 F
2538 2858 0.251922 ACCTGTGCTTCCAATGGCAT 60.252 50.0 0.00 0.0 40.66 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1327 0.391263 ATCTTCTCCGCGGAAACACC 60.391 55.000 30.53 0.0 0.00 4.16 R
2555 2876 0.251165 GCCACCCAAGCAAAGAGGTA 60.251 55.000 0.00 0.0 0.00 3.08 R
2705 3026 1.071542 TCCAGGAGCAAAACGATCACA 59.928 47.619 0.00 0.0 0.00 3.58 R
3368 3721 9.833894 CGTTTTCTGAAAGTGTTCATAATTTTG 57.166 29.630 2.75 0.0 42.85 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 3.809423 TCCTCGTCGGATCTCGTG 58.191 61.111 0.00 0.00 36.69 4.35
44 45 1.219935 TCCTCGTCGGATCTCGTGA 59.780 57.895 0.00 0.00 36.69 4.35
45 46 0.810426 TCCTCGTCGGATCTCGTGAG 60.810 60.000 14.86 14.86 39.89 3.51
46 47 0.810426 CCTCGTCGGATCTCGTGAGA 60.810 60.000 19.32 1.43 41.38 3.27
55 56 0.671251 ATCTCGTGAGATTCCTCGCC 59.329 55.000 6.55 0.00 45.31 5.54
56 57 0.394488 TCTCGTGAGATTCCTCGCCT 60.394 55.000 0.00 0.00 44.83 5.52
57 58 0.030101 CTCGTGAGATTCCTCGCCTC 59.970 60.000 0.00 0.00 44.83 4.70
58 59 1.066587 CGTGAGATTCCTCGCCTCC 59.933 63.158 0.00 0.00 44.83 4.30
59 60 1.667154 CGTGAGATTCCTCGCCTCCA 61.667 60.000 0.00 0.00 44.83 3.86
60 61 0.755686 GTGAGATTCCTCGCCTCCAT 59.244 55.000 0.00 0.00 42.56 3.41
61 62 0.755079 TGAGATTCCTCGCCTCCATG 59.245 55.000 0.00 0.00 42.33 3.66
62 63 0.034616 GAGATTCCTCGCCTCCATGG 59.965 60.000 4.97 4.97 39.35 3.66
71 72 3.851955 CCTCCATGGCTCCATTGC 58.148 61.111 6.96 0.00 33.90 3.56
78 79 2.123982 GGCTCCATTGCCCTCCAG 60.124 66.667 0.00 0.00 46.82 3.86
79 80 2.832201 GCTCCATTGCCCTCCAGC 60.832 66.667 0.00 0.00 0.00 4.85
80 81 2.123982 CTCCATTGCCCTCCAGCC 60.124 66.667 0.00 0.00 0.00 4.85
81 82 4.113815 TCCATTGCCCTCCAGCCG 62.114 66.667 0.00 0.00 0.00 5.52
84 85 4.365111 ATTGCCCTCCAGCCGCAA 62.365 61.111 0.00 0.00 45.77 4.85
88 89 3.710722 CCCTCCAGCCGCAAGAGT 61.711 66.667 8.40 0.00 43.02 3.24
89 90 2.125350 CCTCCAGCCGCAAGAGTC 60.125 66.667 8.40 0.00 43.02 3.36
90 91 2.659016 CTCCAGCCGCAAGAGTCA 59.341 61.111 0.00 0.00 43.02 3.41
91 92 1.739562 CTCCAGCCGCAAGAGTCAC 60.740 63.158 0.00 0.00 43.02 3.67
92 93 2.743928 CCAGCCGCAAGAGTCACC 60.744 66.667 0.00 0.00 43.02 4.02
93 94 3.114616 CAGCCGCAAGAGTCACCG 61.115 66.667 0.00 0.00 43.02 4.94
99 100 3.114616 CAAGAGTCACCGCCGCTG 61.115 66.667 0.00 0.00 0.00 5.18
103 104 4.927782 AGTCACCGCCGCTGCAAA 62.928 61.111 0.00 0.00 37.32 3.68
104 105 3.959975 GTCACCGCCGCTGCAAAA 61.960 61.111 0.00 0.00 37.32 2.44
105 106 3.212682 TCACCGCCGCTGCAAAAA 61.213 55.556 0.00 0.00 37.32 1.94
121 122 2.174685 AAAAAGGGCCAGGAAGTTGT 57.825 45.000 6.18 0.00 0.00 3.32
122 123 3.322191 AAAAAGGGCCAGGAAGTTGTA 57.678 42.857 6.18 0.00 0.00 2.41
123 124 3.322191 AAAAGGGCCAGGAAGTTGTAA 57.678 42.857 6.18 0.00 0.00 2.41
124 125 3.322191 AAAGGGCCAGGAAGTTGTAAA 57.678 42.857 6.18 0.00 0.00 2.01
125 126 3.542969 AAGGGCCAGGAAGTTGTAAAT 57.457 42.857 6.18 0.00 0.00 1.40
126 127 3.542969 AGGGCCAGGAAGTTGTAAATT 57.457 42.857 6.18 0.00 0.00 1.82
127 128 3.431415 AGGGCCAGGAAGTTGTAAATTC 58.569 45.455 6.18 0.00 0.00 2.17
128 129 3.076032 AGGGCCAGGAAGTTGTAAATTCT 59.924 43.478 6.18 0.00 0.00 2.40
129 130 3.444034 GGGCCAGGAAGTTGTAAATTCTC 59.556 47.826 4.39 0.00 0.00 2.87
130 131 3.444034 GGCCAGGAAGTTGTAAATTCTCC 59.556 47.826 0.00 0.00 0.00 3.71
131 132 3.444034 GCCAGGAAGTTGTAAATTCTCCC 59.556 47.826 5.02 0.00 0.00 4.30
132 133 4.811063 GCCAGGAAGTTGTAAATTCTCCCT 60.811 45.833 5.02 0.00 0.00 4.20
133 134 5.325239 CCAGGAAGTTGTAAATTCTCCCTT 58.675 41.667 5.02 0.00 0.00 3.95
134 135 5.416013 CCAGGAAGTTGTAAATTCTCCCTTC 59.584 44.000 5.02 0.00 0.00 3.46
135 136 6.003950 CAGGAAGTTGTAAATTCTCCCTTCA 58.996 40.000 5.02 0.00 30.91 3.02
136 137 6.490040 CAGGAAGTTGTAAATTCTCCCTTCAA 59.510 38.462 5.02 0.00 30.91 2.69
137 138 7.014230 CAGGAAGTTGTAAATTCTCCCTTCAAA 59.986 37.037 5.02 0.00 30.91 2.69
138 139 7.563556 AGGAAGTTGTAAATTCTCCCTTCAAAA 59.436 33.333 5.02 0.00 30.91 2.44
139 140 8.201464 GGAAGTTGTAAATTCTCCCTTCAAAAA 58.799 33.333 5.02 0.00 30.91 1.94
140 141 8.942338 AAGTTGTAAATTCTCCCTTCAAAAAC 57.058 30.769 0.00 0.00 0.00 2.43
141 142 8.073467 AGTTGTAAATTCTCCCTTCAAAAACA 57.927 30.769 0.00 0.00 0.00 2.83
142 143 8.536175 AGTTGTAAATTCTCCCTTCAAAAACAA 58.464 29.630 0.00 0.00 0.00 2.83
143 144 8.600625 GTTGTAAATTCTCCCTTCAAAAACAAC 58.399 33.333 0.00 0.00 36.27 3.32
144 145 8.073467 TGTAAATTCTCCCTTCAAAAACAACT 57.927 30.769 0.00 0.00 0.00 3.16
145 146 7.978975 TGTAAATTCTCCCTTCAAAAACAACTG 59.021 33.333 0.00 0.00 0.00 3.16
146 147 4.385358 TTCTCCCTTCAAAAACAACTGC 57.615 40.909 0.00 0.00 0.00 4.40
147 148 3.631250 TCTCCCTTCAAAAACAACTGCT 58.369 40.909 0.00 0.00 0.00 4.24
148 149 3.632145 TCTCCCTTCAAAAACAACTGCTC 59.368 43.478 0.00 0.00 0.00 4.26
149 150 3.360867 TCCCTTCAAAAACAACTGCTCA 58.639 40.909 0.00 0.00 0.00 4.26
150 151 3.381272 TCCCTTCAAAAACAACTGCTCAG 59.619 43.478 0.00 0.00 0.00 3.35
151 152 3.131046 CCCTTCAAAAACAACTGCTCAGT 59.869 43.478 0.00 0.00 44.94 3.41
162 163 3.963383 ACTGCTCAGTTGTAAAAACGG 57.037 42.857 0.00 0.00 38.83 4.44
163 164 3.275999 ACTGCTCAGTTGTAAAAACGGT 58.724 40.909 0.00 0.00 38.83 4.83
164 165 3.064820 ACTGCTCAGTTGTAAAAACGGTG 59.935 43.478 0.00 0.00 38.83 4.94
165 166 2.356382 TGCTCAGTTGTAAAAACGGTGG 59.644 45.455 0.00 0.00 0.00 4.61
166 167 2.614983 GCTCAGTTGTAAAAACGGTGGA 59.385 45.455 0.00 0.00 0.00 4.02
167 168 3.547413 GCTCAGTTGTAAAAACGGTGGAC 60.547 47.826 0.00 0.00 0.00 4.02
168 169 3.875134 CTCAGTTGTAAAAACGGTGGACT 59.125 43.478 0.00 0.00 0.00 3.85
169 170 3.623960 TCAGTTGTAAAAACGGTGGACTG 59.376 43.478 0.00 0.00 35.73 3.51
170 171 2.356695 AGTTGTAAAAACGGTGGACTGC 59.643 45.455 0.00 0.00 0.00 4.40
171 172 0.938713 TGTAAAAACGGTGGACTGCG 59.061 50.000 0.00 0.00 0.00 5.18
172 173 0.385098 GTAAAAACGGTGGACTGCGC 60.385 55.000 0.00 0.00 0.00 6.09
173 174 1.833434 TAAAAACGGTGGACTGCGCG 61.833 55.000 0.00 0.00 0.00 6.86
174 175 4.595538 AAACGGTGGACTGCGCGA 62.596 61.111 12.10 0.00 0.00 5.87
192 193 4.946038 CCGGCCGGTTGAAGATAA 57.054 55.556 36.64 0.00 0.00 1.75
193 194 2.690326 CCGGCCGGTTGAAGATAAG 58.310 57.895 36.64 5.51 0.00 1.73
194 195 1.436983 CCGGCCGGTTGAAGATAAGC 61.437 60.000 36.64 0.00 0.00 3.09
195 196 0.462047 CGGCCGGTTGAAGATAAGCT 60.462 55.000 20.10 0.00 0.00 3.74
196 197 1.751437 GGCCGGTTGAAGATAAGCTT 58.249 50.000 3.48 3.48 40.25 3.74
197 198 2.092323 GGCCGGTTGAAGATAAGCTTT 58.908 47.619 3.20 0.00 36.83 3.51
198 199 2.492088 GGCCGGTTGAAGATAAGCTTTT 59.508 45.455 3.20 0.00 36.83 2.27
199 200 3.427638 GGCCGGTTGAAGATAAGCTTTTC 60.428 47.826 3.20 6.53 36.83 2.29
200 201 3.427638 GCCGGTTGAAGATAAGCTTTTCC 60.428 47.826 3.20 0.00 36.83 3.13
201 202 4.010349 CCGGTTGAAGATAAGCTTTTCCT 58.990 43.478 3.20 0.00 36.83 3.36
202 203 4.459337 CCGGTTGAAGATAAGCTTTTCCTT 59.541 41.667 3.20 5.83 36.83 3.36
203 204 5.048013 CCGGTTGAAGATAAGCTTTTCCTTT 60.048 40.000 3.20 0.00 36.83 3.11
204 205 6.150474 CCGGTTGAAGATAAGCTTTTCCTTTA 59.850 38.462 3.20 0.06 36.83 1.85
205 206 7.308951 CCGGTTGAAGATAAGCTTTTCCTTTAA 60.309 37.037 3.20 6.32 36.83 1.52
245 246 1.646912 TTGTTGACGGAGGGGTATCA 58.353 50.000 0.00 0.00 0.00 2.15
311 312 6.332630 CCAAATCAATGAGGTTAACCATGAC 58.667 40.000 26.26 14.18 38.89 3.06
322 323 1.546589 AACCATGACGCCGTTCCCTA 61.547 55.000 0.00 0.00 0.00 3.53
352 353 9.911788 AAATATACTCTCTCCATTTCACAATGT 57.088 29.630 0.00 0.00 38.58 2.71
355 356 6.365970 ACTCTCTCCATTTCACAATGTAGT 57.634 37.500 0.00 0.00 38.58 2.73
356 357 6.169094 ACTCTCTCCATTTCACAATGTAGTG 58.831 40.000 0.00 0.00 38.58 2.74
357 358 4.937620 TCTCTCCATTTCACAATGTAGTGC 59.062 41.667 0.00 0.00 38.58 4.40
358 359 4.910195 TCTCCATTTCACAATGTAGTGCT 58.090 39.130 0.00 0.00 38.58 4.40
359 360 5.316167 TCTCCATTTCACAATGTAGTGCTT 58.684 37.500 0.00 0.00 38.58 3.91
360 361 5.769662 TCTCCATTTCACAATGTAGTGCTTT 59.230 36.000 0.00 0.00 38.58 3.51
361 362 6.012658 TCCATTTCACAATGTAGTGCTTTC 57.987 37.500 0.00 0.00 38.58 2.62
362 363 5.769662 TCCATTTCACAATGTAGTGCTTTCT 59.230 36.000 0.00 0.00 38.58 2.52
363 364 6.072508 TCCATTTCACAATGTAGTGCTTTCTC 60.073 38.462 0.00 0.00 38.58 2.87
364 365 6.072286 CCATTTCACAATGTAGTGCTTTCTCT 60.072 38.462 0.00 0.00 38.58 3.10
365 366 7.119699 CCATTTCACAATGTAGTGCTTTCTCTA 59.880 37.037 0.00 0.00 38.58 2.43
366 367 8.671921 CATTTCACAATGTAGTGCTTTCTCTAT 58.328 33.333 0.00 0.00 39.35 1.98
367 368 7.834068 TTCACAATGTAGTGCTTTCTCTATC 57.166 36.000 0.00 0.00 39.35 2.08
368 369 6.341316 TCACAATGTAGTGCTTTCTCTATCC 58.659 40.000 0.00 0.00 39.35 2.59
369 370 5.525378 CACAATGTAGTGCTTTCTCTATCCC 59.475 44.000 0.00 0.00 32.04 3.85
370 371 4.965200 ATGTAGTGCTTTCTCTATCCCC 57.035 45.455 0.00 0.00 0.00 4.81
371 372 2.693591 TGTAGTGCTTTCTCTATCCCCG 59.306 50.000 0.00 0.00 0.00 5.73
372 373 1.867363 AGTGCTTTCTCTATCCCCGT 58.133 50.000 0.00 0.00 0.00 5.28
373 374 1.482593 AGTGCTTTCTCTATCCCCGTG 59.517 52.381 0.00 0.00 0.00 4.94
374 375 0.178068 TGCTTTCTCTATCCCCGTGC 59.822 55.000 0.00 0.00 0.00 5.34
375 376 0.466124 GCTTTCTCTATCCCCGTGCT 59.534 55.000 0.00 0.00 0.00 4.40
376 377 1.134371 GCTTTCTCTATCCCCGTGCTT 60.134 52.381 0.00 0.00 0.00 3.91
377 378 2.827652 CTTTCTCTATCCCCGTGCTTC 58.172 52.381 0.00 0.00 0.00 3.86
378 379 1.860641 TTCTCTATCCCCGTGCTTCA 58.139 50.000 0.00 0.00 0.00 3.02
379 380 1.860641 TCTCTATCCCCGTGCTTCAA 58.139 50.000 0.00 0.00 0.00 2.69
380 381 1.480954 TCTCTATCCCCGTGCTTCAAC 59.519 52.381 0.00 0.00 0.00 3.18
381 382 1.482593 CTCTATCCCCGTGCTTCAACT 59.517 52.381 0.00 0.00 0.00 3.16
382 383 1.906574 TCTATCCCCGTGCTTCAACTT 59.093 47.619 0.00 0.00 0.00 2.66
383 384 2.304761 TCTATCCCCGTGCTTCAACTTT 59.695 45.455 0.00 0.00 0.00 2.66
384 385 1.247567 ATCCCCGTGCTTCAACTTTG 58.752 50.000 0.00 0.00 0.00 2.77
385 386 0.181587 TCCCCGTGCTTCAACTTTGA 59.818 50.000 0.00 0.00 34.92 2.69
386 387 0.310854 CCCCGTGCTTCAACTTTGAC 59.689 55.000 0.00 0.00 36.83 3.18
387 388 0.310854 CCCGTGCTTCAACTTTGACC 59.689 55.000 0.00 0.00 36.83 4.02
388 389 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.000 0.00 0.00 36.83 4.79
389 390 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
390 391 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
391 392 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
392 393 3.059188 CGTGCTTCAACTTTGACCGTAAT 60.059 43.478 0.00 0.00 36.83 1.89
393 394 4.553938 CGTGCTTCAACTTTGACCGTAATT 60.554 41.667 0.00 0.00 36.83 1.40
394 395 5.278604 GTGCTTCAACTTTGACCGTAATTT 58.721 37.500 0.00 0.00 36.83 1.82
395 396 5.746721 GTGCTTCAACTTTGACCGTAATTTT 59.253 36.000 0.00 0.00 36.83 1.82
396 397 6.913673 GTGCTTCAACTTTGACCGTAATTTTA 59.086 34.615 0.00 0.00 36.83 1.52
397 398 7.432838 GTGCTTCAACTTTGACCGTAATTTTAA 59.567 33.333 0.00 0.00 36.83 1.52
398 399 7.432838 TGCTTCAACTTTGACCGTAATTTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
399 400 7.646526 GCTTCAACTTTGACCGTAATTTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
408 409 8.483307 TGACCGTAATTTTAACTATCAAGACC 57.517 34.615 0.00 0.00 0.00 3.85
409 410 7.276218 TGACCGTAATTTTAACTATCAAGACCG 59.724 37.037 0.00 0.00 0.00 4.79
410 411 7.322664 ACCGTAATTTTAACTATCAAGACCGA 58.677 34.615 0.00 0.00 0.00 4.69
411 412 7.983484 ACCGTAATTTTAACTATCAAGACCGAT 59.017 33.333 0.00 0.00 0.00 4.18
412 413 8.823818 CCGTAATTTTAACTATCAAGACCGATT 58.176 33.333 0.00 0.00 0.00 3.34
413 414 9.632969 CGTAATTTTAACTATCAAGACCGATTG 57.367 33.333 0.00 0.00 0.00 2.67
416 417 6.978343 TTTAACTATCAAGACCGATTGTGG 57.022 37.500 0.00 0.00 32.74 4.17
417 418 2.906354 ACTATCAAGACCGATTGTGGC 58.094 47.619 0.00 0.00 31.47 5.01
418 419 1.860950 CTATCAAGACCGATTGTGGCG 59.139 52.381 0.00 0.00 0.00 5.69
439 440 5.409643 CGGGAGCAAAAGTTATATCAGTG 57.590 43.478 0.00 0.00 0.00 3.66
440 441 5.116180 CGGGAGCAAAAGTTATATCAGTGA 58.884 41.667 0.00 0.00 0.00 3.41
441 442 5.584649 CGGGAGCAAAAGTTATATCAGTGAA 59.415 40.000 0.00 0.00 0.00 3.18
442 443 6.260936 CGGGAGCAAAAGTTATATCAGTGAAT 59.739 38.462 0.00 0.00 0.00 2.57
443 444 7.201732 CGGGAGCAAAAGTTATATCAGTGAATT 60.202 37.037 0.00 0.00 0.00 2.17
444 445 8.131731 GGGAGCAAAAGTTATATCAGTGAATTC 58.868 37.037 0.00 0.00 0.00 2.17
445 446 7.852945 GGAGCAAAAGTTATATCAGTGAATTCG 59.147 37.037 0.00 0.00 0.00 3.34
446 447 8.268850 AGCAAAAGTTATATCAGTGAATTCGT 57.731 30.769 0.00 0.00 0.00 3.85
447 448 9.378551 AGCAAAAGTTATATCAGTGAATTCGTA 57.621 29.630 0.00 0.00 0.00 3.43
459 460 8.301730 TCAGTGAATTCGTATTTAAAAGACGT 57.698 30.769 19.47 0.00 37.81 4.34
460 461 8.767085 TCAGTGAATTCGTATTTAAAAGACGTT 58.233 29.630 19.47 11.41 37.81 3.99
461 462 9.377383 CAGTGAATTCGTATTTAAAAGACGTTT 57.623 29.630 19.47 15.55 37.81 3.60
462 463 9.940166 AGTGAATTCGTATTTAAAAGACGTTTT 57.060 25.926 19.47 15.31 39.31 2.43
488 489 6.796705 ATTATATAACTTTTTCTCCCGCCG 57.203 37.500 0.00 0.00 0.00 6.46
489 490 1.092348 ATAACTTTTTCTCCCGCCGC 58.908 50.000 0.00 0.00 0.00 6.53
490 491 0.250381 TAACTTTTTCTCCCGCCGCA 60.250 50.000 0.00 0.00 0.00 5.69
491 492 1.515521 AACTTTTTCTCCCGCCGCAG 61.516 55.000 0.00 0.00 0.00 5.18
492 493 1.966451 CTTTTTCTCCCGCCGCAGT 60.966 57.895 0.00 0.00 0.00 4.40
493 494 1.912371 CTTTTTCTCCCGCCGCAGTC 61.912 60.000 0.00 0.00 0.00 3.51
494 495 4.735132 TTTCTCCCGCCGCAGTCG 62.735 66.667 0.00 0.00 0.00 4.18
504 505 3.680525 CGCAGTCGGTCTCATTCG 58.319 61.111 0.00 0.00 0.00 3.34
505 506 1.154016 CGCAGTCGGTCTCATTCGT 60.154 57.895 0.00 0.00 0.00 3.85
506 507 0.732880 CGCAGTCGGTCTCATTCGTT 60.733 55.000 0.00 0.00 0.00 3.85
507 508 1.466866 CGCAGTCGGTCTCATTCGTTA 60.467 52.381 0.00 0.00 0.00 3.18
508 509 2.602878 GCAGTCGGTCTCATTCGTTAA 58.397 47.619 0.00 0.00 0.00 2.01
509 510 2.991190 GCAGTCGGTCTCATTCGTTAAA 59.009 45.455 0.00 0.00 0.00 1.52
510 511 3.617263 GCAGTCGGTCTCATTCGTTAAAT 59.383 43.478 0.00 0.00 0.00 1.40
511 512 4.092968 GCAGTCGGTCTCATTCGTTAAATT 59.907 41.667 0.00 0.00 0.00 1.82
512 513 5.390567 GCAGTCGGTCTCATTCGTTAAATTT 60.391 40.000 0.00 0.00 0.00 1.82
513 514 6.183360 GCAGTCGGTCTCATTCGTTAAATTTA 60.183 38.462 0.00 0.00 0.00 1.40
514 515 7.465513 GCAGTCGGTCTCATTCGTTAAATTTAT 60.466 37.037 0.00 0.00 0.00 1.40
515 516 7.846107 CAGTCGGTCTCATTCGTTAAATTTATG 59.154 37.037 0.00 0.00 0.00 1.90
516 517 7.011109 AGTCGGTCTCATTCGTTAAATTTATGG 59.989 37.037 0.00 0.00 0.00 2.74
517 518 6.819649 TCGGTCTCATTCGTTAAATTTATGGT 59.180 34.615 0.00 0.00 0.00 3.55
518 519 7.010738 TCGGTCTCATTCGTTAAATTTATGGTC 59.989 37.037 0.00 0.00 0.00 4.02
519 520 7.201574 CGGTCTCATTCGTTAAATTTATGGTCA 60.202 37.037 0.00 0.00 0.00 4.02
520 521 8.455682 GGTCTCATTCGTTAAATTTATGGTCAA 58.544 33.333 0.00 0.00 0.00 3.18
521 522 9.834628 GTCTCATTCGTTAAATTTATGGTCAAA 57.165 29.630 0.00 0.00 0.00 2.69
523 524 9.840427 CTCATTCGTTAAATTTATGGTCAAAGT 57.160 29.630 0.00 0.00 0.00 2.66
526 527 8.716619 TTCGTTAAATTTATGGTCAAAGTTCG 57.283 30.769 0.00 0.00 29.44 3.95
527 528 8.085720 TCGTTAAATTTATGGTCAAAGTTCGA 57.914 30.769 0.00 0.00 29.44 3.71
528 529 8.011106 TCGTTAAATTTATGGTCAAAGTTCGAC 58.989 33.333 0.00 0.00 29.44 4.20
541 542 2.803670 TCGACCTCGAAAAGCGCG 60.804 61.111 0.00 0.00 46.30 6.86
555 556 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
556 557 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
557 558 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
558 559 0.941542 GCGGGCGCACTATATTTTGA 59.058 50.000 8.62 0.00 41.49 2.69
559 560 1.332375 GCGGGCGCACTATATTTTGAA 59.668 47.619 8.62 0.00 41.49 2.69
560 561 2.223386 GCGGGCGCACTATATTTTGAAA 60.223 45.455 8.62 0.00 41.49 2.69
561 562 3.550030 GCGGGCGCACTATATTTTGAAAT 60.550 43.478 8.62 0.00 41.49 2.17
562 563 3.974401 CGGGCGCACTATATTTTGAAATG 59.026 43.478 8.62 0.00 0.00 2.32
563 564 4.298332 GGGCGCACTATATTTTGAAATGG 58.702 43.478 10.83 0.00 0.00 3.16
564 565 4.037446 GGGCGCACTATATTTTGAAATGGA 59.963 41.667 10.83 0.00 0.00 3.41
565 566 5.215160 GGCGCACTATATTTTGAAATGGAG 58.785 41.667 10.83 0.06 0.00 3.86
566 567 5.215160 GCGCACTATATTTTGAAATGGAGG 58.785 41.667 0.30 0.00 0.00 4.30
567 568 5.762045 CGCACTATATTTTGAAATGGAGGG 58.238 41.667 0.00 0.00 0.00 4.30
568 569 5.530915 CGCACTATATTTTGAAATGGAGGGA 59.469 40.000 0.00 0.00 0.00 4.20
569 570 6.293626 CGCACTATATTTTGAAATGGAGGGAG 60.294 42.308 0.00 0.00 0.00 4.30
587 588 7.092444 TGGAGGGAGTATTTGTTTCATAGACAT 60.092 37.037 0.00 0.00 0.00 3.06
603 604 7.311408 TCATAGACATAGAGATTGAATGAGCG 58.689 38.462 0.00 0.00 0.00 5.03
608 609 7.550551 AGACATAGAGATTGAATGAGCGAAAAA 59.449 33.333 0.00 0.00 0.00 1.94
764 774 1.089920 CCTTCTTCTGCCCATGAACG 58.910 55.000 0.00 0.00 0.00 3.95
785 795 4.039092 CCACACCCAGCCCTCCAG 62.039 72.222 0.00 0.00 0.00 3.86
792 802 3.478274 CAGCCCTCCAGCTCCTCC 61.478 72.222 0.00 0.00 42.61 4.30
795 805 2.837291 CCCTCCAGCTCCTCCTCG 60.837 72.222 0.00 0.00 0.00 4.63
797 807 2.124693 CCTCCAGCTCCTCCTCGTC 61.125 68.421 0.00 0.00 0.00 4.20
798 808 2.438614 TCCAGCTCCTCCTCGTCG 60.439 66.667 0.00 0.00 0.00 5.12
799 809 2.752238 CCAGCTCCTCCTCGTCGT 60.752 66.667 0.00 0.00 0.00 4.34
800 810 2.766400 CCAGCTCCTCCTCGTCGTC 61.766 68.421 0.00 0.00 0.00 4.20
867 877 2.740714 GCTGCAAGGTAACCTCGCG 61.741 63.158 0.00 0.00 30.89 5.87
891 901 1.338105 CGTCACTCCCTTGCAATCAGA 60.338 52.381 0.00 0.00 0.00 3.27
906 917 0.033991 TCAGACTTCCCTCCTCCTCG 60.034 60.000 0.00 0.00 0.00 4.63
936 948 3.368843 CGTCCTCCATGTCTCTGTGATTT 60.369 47.826 0.00 0.00 0.00 2.17
1174 1204 4.322650 GGGACAGAAATTGCTGCCATTTTA 60.323 41.667 21.48 0.00 39.51 1.52
1215 1253 2.675889 GCATTGAGTCAAATTGCAGGGG 60.676 50.000 21.25 2.08 0.00 4.79
1216 1254 2.380064 TTGAGTCAAATTGCAGGGGT 57.620 45.000 2.20 0.00 0.00 4.95
1227 1265 3.535280 TTGCAGGGGTTTTCTGTTTTC 57.465 42.857 0.00 0.00 34.89 2.29
1273 1316 2.833227 CCCCCTGTCCGTGTCAAA 59.167 61.111 0.00 0.00 0.00 2.69
1284 1327 7.021196 CCTGTCCGTGTCAAAAATAAGTATTG 58.979 38.462 0.00 0.00 0.00 1.90
1364 1458 6.041637 TGCGATTTAATAGTAGGAGATGGTGT 59.958 38.462 0.00 0.00 0.00 4.16
1367 1461 8.979574 CGATTTAATAGTAGGAGATGGTGTTTC 58.020 37.037 0.00 0.00 0.00 2.78
1368 1462 9.274206 GATTTAATAGTAGGAGATGGTGTTTCC 57.726 37.037 0.00 0.00 0.00 3.13
1369 1463 4.939052 ATAGTAGGAGATGGTGTTTCCG 57.061 45.455 0.00 0.00 39.52 4.30
1370 1464 1.207329 AGTAGGAGATGGTGTTTCCGC 59.793 52.381 0.00 0.00 39.52 5.54
1371 1465 0.174845 TAGGAGATGGTGTTTCCGCG 59.825 55.000 0.00 0.00 39.52 6.46
1372 1466 1.375523 GGAGATGGTGTTTCCGCGT 60.376 57.895 4.92 0.00 39.52 6.01
1373 1467 0.108520 GGAGATGGTGTTTCCGCGTA 60.109 55.000 4.92 0.00 39.52 4.42
1374 1468 0.997196 GAGATGGTGTTTCCGCGTAC 59.003 55.000 4.92 0.30 39.52 3.67
1375 1469 0.606604 AGATGGTGTTTCCGCGTACT 59.393 50.000 4.92 0.00 39.52 2.73
1376 1470 0.719465 GATGGTGTTTCCGCGTACTG 59.281 55.000 4.92 0.00 39.52 2.74
1379 1473 0.388907 GGTGTTTCCGCGTACTGCTA 60.389 55.000 4.92 0.00 43.27 3.49
1396 1490 8.160342 CGTACTGCTACTAGTATTGTTTTTGTG 58.840 37.037 2.33 0.00 35.75 3.33
1523 1617 5.213891 TCTGTGTGAAAGCAGTAAGATGA 57.786 39.130 0.00 0.00 34.57 2.92
1531 1625 5.046304 TGAAAGCAGTAAGATGAGCCTACTT 60.046 40.000 0.00 0.00 0.00 2.24
1532 1626 4.399004 AGCAGTAAGATGAGCCTACTTG 57.601 45.455 0.00 0.00 0.00 3.16
1533 1627 3.772025 AGCAGTAAGATGAGCCTACTTGT 59.228 43.478 0.00 0.00 0.00 3.16
1534 1628 4.223923 AGCAGTAAGATGAGCCTACTTGTT 59.776 41.667 0.00 0.00 0.00 2.83
1535 1629 4.938226 GCAGTAAGATGAGCCTACTTGTTT 59.062 41.667 0.00 0.00 0.00 2.83
1536 1630 5.412904 GCAGTAAGATGAGCCTACTTGTTTT 59.587 40.000 0.00 0.00 0.00 2.43
1537 1631 6.621596 GCAGTAAGATGAGCCTACTTGTTTTG 60.622 42.308 0.00 0.00 0.00 2.44
1538 1632 4.773323 AAGATGAGCCTACTTGTTTTGC 57.227 40.909 0.00 0.00 0.00 3.68
1539 1633 2.744202 AGATGAGCCTACTTGTTTTGCG 59.256 45.455 0.00 0.00 0.00 4.85
1540 1634 1.961793 TGAGCCTACTTGTTTTGCGT 58.038 45.000 0.00 0.00 0.00 5.24
1541 1635 1.601903 TGAGCCTACTTGTTTTGCGTG 59.398 47.619 0.00 0.00 0.00 5.34
1542 1636 0.951558 AGCCTACTTGTTTTGCGTGG 59.048 50.000 0.00 0.00 0.00 4.94
1543 1637 0.666374 GCCTACTTGTTTTGCGTGGT 59.334 50.000 0.00 0.00 0.00 4.16
1544 1638 1.599419 GCCTACTTGTTTTGCGTGGTG 60.599 52.381 0.00 0.00 0.00 4.17
1545 1639 1.599419 CCTACTTGTTTTGCGTGGTGC 60.599 52.381 0.00 0.00 46.70 5.01
1546 1640 1.333619 CTACTTGTTTTGCGTGGTGCT 59.666 47.619 0.00 0.00 46.63 4.40
1547 1641 1.384525 ACTTGTTTTGCGTGGTGCTA 58.615 45.000 0.00 0.00 46.63 3.49
1548 1642 1.953686 ACTTGTTTTGCGTGGTGCTAT 59.046 42.857 0.00 0.00 46.63 2.97
1549 1643 2.287547 ACTTGTTTTGCGTGGTGCTATG 60.288 45.455 0.00 0.00 46.63 2.23
1550 1644 0.595588 TGTTTTGCGTGGTGCTATGG 59.404 50.000 0.00 0.00 46.63 2.74
1551 1645 0.732538 GTTTTGCGTGGTGCTATGGC 60.733 55.000 0.00 0.00 46.63 4.40
1579 1673 2.135933 CTTGTCTTCTTTTCTCGCCGT 58.864 47.619 0.00 0.00 0.00 5.68
1582 1676 3.921677 TGTCTTCTTTTCTCGCCGTTAT 58.078 40.909 0.00 0.00 0.00 1.89
1643 1737 9.063615 AGGTGTAATTTGTAAGAGTTTTAGTGG 57.936 33.333 0.00 0.00 0.00 4.00
1647 1741 9.608617 GTAATTTGTAAGAGTTTTAGTGGAAGC 57.391 33.333 0.00 0.00 0.00 3.86
1649 1743 7.633193 TTTGTAAGAGTTTTAGTGGAAGCAA 57.367 32.000 0.00 0.00 0.00 3.91
1650 1744 7.817418 TTGTAAGAGTTTTAGTGGAAGCAAT 57.183 32.000 0.00 0.00 0.00 3.56
1654 1748 6.959639 AGAGTTTTAGTGGAAGCAATTCAA 57.040 33.333 0.00 0.00 0.00 2.69
1655 1749 7.530426 AGAGTTTTAGTGGAAGCAATTCAAT 57.470 32.000 0.00 0.00 0.00 2.57
1658 1752 8.409358 AGTTTTAGTGGAAGCAATTCAATAGT 57.591 30.769 0.00 0.00 0.00 2.12
1687 1782 7.481275 TGGCACAAAAATGAGAAAGAAATTC 57.519 32.000 0.00 0.00 34.57 2.17
1690 1785 8.397148 GGCACAAAAATGAGAAAGAAATTCAAA 58.603 29.630 0.00 0.00 40.72 2.69
1709 1976 8.947055 ATTCAAATAGGGTTTTGTCATAATGC 57.053 30.769 0.00 0.00 37.73 3.56
1711 1978 8.076910 TCAAATAGGGTTTTGTCATAATGCAT 57.923 30.769 0.00 0.00 37.73 3.96
1727 1994 3.254470 TGCATGGAAGCAATTCAATGG 57.746 42.857 7.32 0.00 42.46 3.16
1728 1995 2.568062 TGCATGGAAGCAATTCAATGGT 59.432 40.909 7.32 0.00 42.46 3.55
1729 1996 3.008157 TGCATGGAAGCAATTCAATGGTT 59.992 39.130 7.32 0.00 42.46 3.67
1730 1997 4.004982 GCATGGAAGCAATTCAATGGTTT 58.995 39.130 7.32 0.00 40.82 3.27
1731 1998 4.093850 GCATGGAAGCAATTCAATGGTTTC 59.906 41.667 7.32 0.00 40.82 2.78
1732 1999 5.484715 CATGGAAGCAATTCAATGGTTTCT 58.515 37.500 1.73 0.00 40.82 2.52
1733 2000 5.138125 TGGAAGCAATTCAATGGTTTCTC 57.862 39.130 1.73 0.00 40.82 2.87
1734 2001 4.168760 GGAAGCAATTCAATGGTTTCTCG 58.831 43.478 1.73 0.00 40.82 4.04
1735 2002 3.221964 AGCAATTCAATGGTTTCTCGC 57.778 42.857 0.00 0.00 0.00 5.03
1736 2003 2.557924 AGCAATTCAATGGTTTCTCGCA 59.442 40.909 0.00 0.00 0.00 5.10
1737 2004 3.194116 AGCAATTCAATGGTTTCTCGCAT 59.806 39.130 0.00 0.00 0.00 4.73
1761 2029 2.554032 ACAATCTGAAAGGTTCAAGGCG 59.446 45.455 0.00 0.00 32.67 5.52
1786 2054 4.228210 TCAGATTTTAGTGGAAGCCAGGAT 59.772 41.667 0.00 0.00 32.34 3.24
1787 2055 4.952335 CAGATTTTAGTGGAAGCCAGGATT 59.048 41.667 0.00 0.00 32.34 3.01
1793 2061 3.575805 AGTGGAAGCCAGGATTTTTCAA 58.424 40.909 0.00 0.00 32.34 2.69
1794 2062 3.321968 AGTGGAAGCCAGGATTTTTCAAC 59.678 43.478 0.00 0.00 32.34 3.18
1795 2063 3.321968 GTGGAAGCCAGGATTTTTCAACT 59.678 43.478 0.00 0.00 32.34 3.16
1796 2064 3.966665 TGGAAGCCAGGATTTTTCAACTT 59.033 39.130 0.00 0.00 0.00 2.66
1797 2065 4.202243 TGGAAGCCAGGATTTTTCAACTTG 60.202 41.667 0.00 0.00 0.00 3.16
1798 2066 3.391506 AGCCAGGATTTTTCAACTTGC 57.608 42.857 0.00 0.00 0.00 4.01
1799 2067 2.699846 AGCCAGGATTTTTCAACTTGCA 59.300 40.909 0.00 0.00 0.00 4.08
1800 2068 3.134442 AGCCAGGATTTTTCAACTTGCAA 59.866 39.130 0.00 0.00 0.00 4.08
1801 2069 3.876320 GCCAGGATTTTTCAACTTGCAAA 59.124 39.130 0.00 0.00 0.00 3.68
1802 2070 4.335037 GCCAGGATTTTTCAACTTGCAAAA 59.665 37.500 0.00 2.41 28.14 2.44
1803 2071 5.008911 GCCAGGATTTTTCAACTTGCAAAAT 59.991 36.000 10.69 10.69 36.26 1.82
1804 2072 6.204495 GCCAGGATTTTTCAACTTGCAAAATA 59.796 34.615 10.82 0.00 34.33 1.40
1805 2073 7.571798 GCCAGGATTTTTCAACTTGCAAAATAG 60.572 37.037 10.82 5.97 34.33 1.73
1806 2074 7.293018 CAGGATTTTTCAACTTGCAAAATAGC 58.707 34.615 10.82 2.48 34.33 2.97
1807 2075 7.172019 CAGGATTTTTCAACTTGCAAAATAGCT 59.828 33.333 10.82 0.00 34.33 3.32
1808 2076 7.172019 AGGATTTTTCAACTTGCAAAATAGCTG 59.828 33.333 10.82 0.00 34.33 4.24
1809 2077 6.601741 TTTTTCAACTTGCAAAATAGCTGG 57.398 33.333 0.00 0.00 34.99 4.85
1810 2078 5.528043 TTTCAACTTGCAAAATAGCTGGA 57.472 34.783 0.00 0.00 34.99 3.86
1811 2079 4.771590 TCAACTTGCAAAATAGCTGGAG 57.228 40.909 0.00 0.00 34.99 3.86
1812 2080 3.507233 TCAACTTGCAAAATAGCTGGAGG 59.493 43.478 0.00 0.00 34.99 4.30
1813 2081 3.439857 ACTTGCAAAATAGCTGGAGGA 57.560 42.857 0.00 0.00 34.99 3.71
1814 2082 3.766545 ACTTGCAAAATAGCTGGAGGAA 58.233 40.909 0.00 0.00 34.99 3.36
1815 2083 4.151883 ACTTGCAAAATAGCTGGAGGAAA 58.848 39.130 0.00 0.00 34.99 3.13
1816 2084 4.588528 ACTTGCAAAATAGCTGGAGGAAAA 59.411 37.500 0.00 0.00 34.99 2.29
1817 2085 4.789012 TGCAAAATAGCTGGAGGAAAAG 57.211 40.909 0.00 0.00 34.99 2.27
1818 2086 4.151883 TGCAAAATAGCTGGAGGAAAAGT 58.848 39.130 0.00 0.00 34.99 2.66
1819 2087 4.218417 TGCAAAATAGCTGGAGGAAAAGTC 59.782 41.667 0.00 0.00 34.99 3.01
1820 2088 4.460731 GCAAAATAGCTGGAGGAAAAGTCT 59.539 41.667 0.00 0.00 0.00 3.24
1821 2089 5.620879 GCAAAATAGCTGGAGGAAAAGTCTG 60.621 44.000 0.00 0.00 0.00 3.51
1822 2090 3.922171 ATAGCTGGAGGAAAAGTCTGG 57.078 47.619 0.00 0.00 0.00 3.86
1823 2091 1.734655 AGCTGGAGGAAAAGTCTGGA 58.265 50.000 0.00 0.00 0.00 3.86
1824 2092 2.057922 AGCTGGAGGAAAAGTCTGGAA 58.942 47.619 0.00 0.00 0.00 3.53
1825 2093 2.039613 AGCTGGAGGAAAAGTCTGGAAG 59.960 50.000 0.00 0.00 0.00 3.46
1826 2094 2.431454 CTGGAGGAAAAGTCTGGAAGC 58.569 52.381 0.00 0.00 0.00 3.86
1827 2095 1.270839 TGGAGGAAAAGTCTGGAAGCG 60.271 52.381 0.00 0.00 0.00 4.68
1828 2096 1.002087 GGAGGAAAAGTCTGGAAGCGA 59.998 52.381 0.00 0.00 0.00 4.93
1829 2097 2.550208 GGAGGAAAAGTCTGGAAGCGAA 60.550 50.000 0.00 0.00 0.00 4.70
1830 2098 3.339141 GAGGAAAAGTCTGGAAGCGAAT 58.661 45.455 0.00 0.00 0.00 3.34
1831 2099 4.504858 GAGGAAAAGTCTGGAAGCGAATA 58.495 43.478 0.00 0.00 0.00 1.75
1832 2100 5.104259 AGGAAAAGTCTGGAAGCGAATAT 57.896 39.130 0.00 0.00 0.00 1.28
1833 2101 6.235231 AGGAAAAGTCTGGAAGCGAATATA 57.765 37.500 0.00 0.00 0.00 0.86
1834 2102 6.831976 AGGAAAAGTCTGGAAGCGAATATAT 58.168 36.000 0.00 0.00 0.00 0.86
1835 2103 6.931840 AGGAAAAGTCTGGAAGCGAATATATC 59.068 38.462 0.00 0.00 0.00 1.63
1836 2104 6.706270 GGAAAAGTCTGGAAGCGAATATATCA 59.294 38.462 0.00 0.00 0.00 2.15
1837 2105 7.095439 GGAAAAGTCTGGAAGCGAATATATCAG 60.095 40.741 0.00 0.00 0.00 2.90
1838 2106 6.656632 AAGTCTGGAAGCGAATATATCAGA 57.343 37.500 0.00 0.00 0.00 3.27
1839 2107 6.656632 AGTCTGGAAGCGAATATATCAGAA 57.343 37.500 0.00 0.00 32.59 3.02
1840 2108 7.055667 AGTCTGGAAGCGAATATATCAGAAA 57.944 36.000 0.00 0.00 32.59 2.52
1841 2109 7.675062 AGTCTGGAAGCGAATATATCAGAAAT 58.325 34.615 0.00 0.00 32.59 2.17
1842 2110 7.816995 AGTCTGGAAGCGAATATATCAGAAATC 59.183 37.037 0.00 0.00 32.59 2.17
1843 2111 7.600375 GTCTGGAAGCGAATATATCAGAAATCA 59.400 37.037 0.00 0.00 32.59 2.57
1844 2112 7.600375 TCTGGAAGCGAATATATCAGAAATCAC 59.400 37.037 0.00 0.00 0.00 3.06
1845 2113 7.445121 TGGAAGCGAATATATCAGAAATCACT 58.555 34.615 0.00 0.00 0.00 3.41
1846 2114 8.585018 TGGAAGCGAATATATCAGAAATCACTA 58.415 33.333 0.00 0.00 0.00 2.74
1847 2115 9.081997 GGAAGCGAATATATCAGAAATCACTAG 57.918 37.037 0.00 0.00 0.00 2.57
1848 2116 9.847706 GAAGCGAATATATCAGAAATCACTAGA 57.152 33.333 0.00 0.00 0.00 2.43
1862 2130 7.780271 AGAAATCACTAGAAAGTTGGAAAACCT 59.220 33.333 0.00 0.00 31.97 3.50
1866 2134 9.668497 ATCACTAGAAAGTTGGAAAACCTATAC 57.332 33.333 0.00 0.00 31.97 1.47
1888 2156 6.828502 ACTGTACGCATTATAACATGACAG 57.171 37.500 0.00 11.78 34.73 3.51
1904 2172 8.433249 AACATGACAGAGACCATCTCATATAT 57.567 34.615 0.00 0.00 45.73 0.86
1905 2173 9.539194 AACATGACAGAGACCATCTCATATATA 57.461 33.333 0.00 0.00 45.73 0.86
1906 2174 9.712250 ACATGACAGAGACCATCTCATATATAT 57.288 33.333 0.00 0.00 45.73 0.86
1956 2224 2.892852 CCTTGCAAACAGAAGGGATCAA 59.107 45.455 0.00 0.00 35.93 2.57
1957 2225 3.305608 CCTTGCAAACAGAAGGGATCAAC 60.306 47.826 0.00 0.00 35.93 3.18
1966 2234 9.177608 CAAACAGAAGGGATCAACATATTCTTA 57.822 33.333 0.00 0.00 0.00 2.10
1969 2237 9.347240 ACAGAAGGGATCAACATATTCTTATTG 57.653 33.333 0.00 0.00 0.00 1.90
1971 2239 7.449704 AGAAGGGATCAACATATTCTTATTGGC 59.550 37.037 0.00 0.00 0.00 4.52
1988 2262 4.486125 TTGGCTAGATTATGTCAGTGCA 57.514 40.909 0.00 0.00 0.00 4.57
1992 2266 3.733224 GCTAGATTATGTCAGTGCAGTCG 59.267 47.826 0.00 0.00 0.00 4.18
1998 2272 1.418373 TGTCAGTGCAGTCGATTTCG 58.582 50.000 0.00 0.00 41.45 3.46
2062 2337 3.290710 GCATAAGAGGGGATTTGAAGCA 58.709 45.455 0.00 0.00 0.00 3.91
2070 2345 1.963515 GGGATTTGAAGCACTGGTTGT 59.036 47.619 0.00 0.00 0.00 3.32
2089 2364 8.232913 TGGTTGTTTTTAAGCTTCAGAGTTAT 57.767 30.769 0.00 0.00 0.00 1.89
2150 2438 4.756642 TGTGCAGAACTGAATTCCTACAAG 59.243 41.667 2.27 0.00 38.16 3.16
2158 2475 9.077885 AGAACTGAATTCCTACAAGCAAAATAA 57.922 29.630 2.27 0.00 38.16 1.40
2161 2478 7.451566 ACTGAATTCCTACAAGCAAAATAAGGT 59.548 33.333 2.27 0.00 0.00 3.50
2207 2524 1.478510 ACCGTCATCTGTAAGCCTGAG 59.521 52.381 0.00 0.00 0.00 3.35
2230 2547 6.327934 AGATGTTAATGTTGCTTGATCTTGC 58.672 36.000 0.00 0.00 0.00 4.01
2251 2571 9.982651 TCTTGCATATTAGAAGTAACAGGATAC 57.017 33.333 0.00 0.00 0.00 2.24
2268 2588 8.197988 ACAGGATACACTTGATTAATTCGTTC 57.802 34.615 0.00 0.00 41.41 3.95
2275 2595 8.029642 ACACTTGATTAATTCGTTCGATTCTT 57.970 30.769 0.00 0.00 0.00 2.52
2276 2596 8.504005 ACACTTGATTAATTCGTTCGATTCTTT 58.496 29.630 0.00 0.00 0.00 2.52
2281 2601 2.178912 TTCGTTCGATTCTTTGCCCT 57.821 45.000 0.00 0.00 0.00 5.19
2287 2607 3.085952 TCGATTCTTTGCCCTTTCCAT 57.914 42.857 0.00 0.00 0.00 3.41
2296 2616 4.540359 TTGCCCTTTCCATCAAATTCAG 57.460 40.909 0.00 0.00 0.00 3.02
2326 2646 0.802222 CGCGGATCGTCACTGAATGT 60.802 55.000 0.00 0.00 0.00 2.71
2327 2647 1.359848 GCGGATCGTCACTGAATGTT 58.640 50.000 0.00 0.00 0.00 2.71
2395 2715 0.581635 CGAAGCGCAAATCGTTCTCG 60.582 55.000 11.47 0.00 41.07 4.04
2398 2718 2.098233 GCGCAAATCGTTCTCGGGA 61.098 57.895 0.30 0.00 41.07 5.14
2434 2754 5.243207 CCGTCAGGTTCAGTTAAAGGTAAT 58.757 41.667 0.00 0.00 0.00 1.89
2436 2756 5.390567 CGTCAGGTTCAGTTAAAGGTAATGC 60.391 44.000 0.00 0.00 0.00 3.56
2507 2827 3.575630 CTCGTCTCATTTCCGAAGTTGA 58.424 45.455 0.00 0.00 0.00 3.18
2510 2830 3.741344 CGTCTCATTTCCGAAGTTGAGTT 59.259 43.478 16.65 0.00 37.46 3.01
2535 2855 1.606224 GCAAACCTGTGCTTCCAATGG 60.606 52.381 0.00 0.00 41.51 3.16
2538 2858 0.251922 ACCTGTGCTTCCAATGGCAT 60.252 50.000 0.00 0.00 40.66 4.40
2540 2860 1.404986 CCTGTGCTTCCAATGGCATTG 60.405 52.381 29.00 29.00 40.66 2.82
2543 2863 0.527113 TGCTTCCAATGGCATTGTCG 59.473 50.000 31.88 20.82 38.59 4.35
2544 2864 0.803380 GCTTCCAATGGCATTGTCGC 60.803 55.000 31.88 26.13 38.59 5.19
2545 2865 0.527113 CTTCCAATGGCATTGTCGCA 59.473 50.000 31.88 14.70 38.59 5.10
2548 2869 0.456628 CCAATGGCATTGTCGCATGA 59.543 50.000 31.88 0.00 38.59 3.07
2555 2876 1.945394 GCATTGTCGCATGATCTCCTT 59.055 47.619 0.00 0.00 0.00 3.36
2558 2879 2.890808 TGTCGCATGATCTCCTTACC 57.109 50.000 0.00 0.00 0.00 2.85
2705 3026 0.328258 CCGGTGGGTTCATCCTCTTT 59.672 55.000 0.00 0.00 36.25 2.52
2747 3068 0.699399 ACCTGAGGGAGTTCGAGAGA 59.301 55.000 2.38 0.00 35.56 3.10
2811 3132 1.672356 CTGGCACCGCAGTAGCTTT 60.672 57.895 0.00 0.00 39.10 3.51
2812 3133 1.639298 CTGGCACCGCAGTAGCTTTC 61.639 60.000 0.00 0.00 39.10 2.62
2813 3134 1.671054 GGCACCGCAGTAGCTTTCA 60.671 57.895 0.00 0.00 39.10 2.69
2814 3135 1.026718 GGCACCGCAGTAGCTTTCAT 61.027 55.000 0.00 0.00 39.10 2.57
2815 3136 0.804989 GCACCGCAGTAGCTTTCATT 59.195 50.000 0.00 0.00 39.10 2.57
2816 3137 1.200020 GCACCGCAGTAGCTTTCATTT 59.800 47.619 0.00 0.00 39.10 2.32
2817 3138 2.351738 GCACCGCAGTAGCTTTCATTTT 60.352 45.455 0.00 0.00 39.10 1.82
2831 3152 8.976986 AGCTTTCATTTTCATTTTAGTAGCTG 57.023 30.769 0.00 0.00 33.27 4.24
2969 3292 1.550130 TTGGACGTGGAGGGCTAAGG 61.550 60.000 0.00 0.00 0.00 2.69
3023 3346 4.280929 GTCCACTTTTATGGCCTCTTTGTT 59.719 41.667 3.32 0.00 39.85 2.83
3031 3354 2.031120 TGGCCTCTTTGTTTGGTTCAG 58.969 47.619 3.32 0.00 0.00 3.02
3034 3357 3.214328 GCCTCTTTGTTTGGTTCAGAGA 58.786 45.455 0.00 0.00 0.00 3.10
3037 3360 5.734503 GCCTCTTTGTTTGGTTCAGAGAAAG 60.735 44.000 0.00 2.96 32.72 2.62
3038 3361 5.248870 TCTTTGTTTGGTTCAGAGAAAGC 57.751 39.130 4.09 0.00 31.94 3.51
3039 3362 4.704540 TCTTTGTTTGGTTCAGAGAAAGCA 59.295 37.500 4.09 0.00 31.94 3.91
3040 3363 4.637483 TTGTTTGGTTCAGAGAAAGCAG 57.363 40.909 0.00 0.00 37.86 4.24
3041 3364 3.884895 TGTTTGGTTCAGAGAAAGCAGA 58.115 40.909 0.00 0.00 37.86 4.26
3043 3366 4.336433 TGTTTGGTTCAGAGAAAGCAGAAG 59.664 41.667 0.00 0.00 37.86 2.85
3044 3367 4.422073 TTGGTTCAGAGAAAGCAGAAGA 57.578 40.909 0.00 0.00 37.86 2.87
3045 3368 4.000331 TGGTTCAGAGAAAGCAGAAGAG 58.000 45.455 0.00 0.00 33.10 2.85
3046 3369 3.643320 TGGTTCAGAGAAAGCAGAAGAGA 59.357 43.478 0.00 0.00 33.10 3.10
3047 3370 4.101585 TGGTTCAGAGAAAGCAGAAGAGAA 59.898 41.667 0.00 0.00 33.10 2.87
3048 3371 4.690280 GGTTCAGAGAAAGCAGAAGAGAAG 59.310 45.833 0.00 0.00 0.00 2.85
3049 3372 5.510520 GGTTCAGAGAAAGCAGAAGAGAAGA 60.511 44.000 0.00 0.00 0.00 2.87
3063 3386 8.735315 GCAGAAGAGAAGATACTAGCACATATA 58.265 37.037 0.00 0.00 0.00 0.86
3164 3491 7.171337 GTGCACATGTGAAAAAGGAACATTTAT 59.829 33.333 29.80 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.810426 TCTCACGAGATCCGACGAGG 60.810 60.000 17.92 0.00 41.76 4.63
28 29 1.222300 ATCTCACGAGATCCGACGAG 58.778 55.000 3.64 12.99 44.37 4.18
29 30 1.598132 GAATCTCACGAGATCCGACGA 59.402 52.381 9.92 5.76 46.75 4.20
30 31 1.334239 GGAATCTCACGAGATCCGACG 60.334 57.143 9.92 6.77 46.75 5.12
31 32 1.950909 AGGAATCTCACGAGATCCGAC 59.049 52.381 9.92 2.07 46.75 4.79
32 33 2.222886 GAGGAATCTCACGAGATCCGA 58.777 52.381 9.92 0.00 46.75 4.55
33 34 1.069568 CGAGGAATCTCACGAGATCCG 60.070 57.143 9.92 7.95 46.75 4.18
34 35 1.335506 GCGAGGAATCTCACGAGATCC 60.336 57.143 9.92 12.03 46.75 3.36
35 36 1.335506 GGCGAGGAATCTCACGAGATC 60.336 57.143 9.92 4.47 46.75 2.75
37 38 0.394488 AGGCGAGGAATCTCACGAGA 60.394 55.000 0.00 0.00 39.95 4.04
38 39 0.030101 GAGGCGAGGAATCTCACGAG 59.970 60.000 0.00 0.00 39.95 4.18
39 40 1.384989 GGAGGCGAGGAATCTCACGA 61.385 60.000 0.00 0.00 39.95 4.35
40 41 1.066587 GGAGGCGAGGAATCTCACG 59.933 63.158 0.00 0.00 39.95 4.35
41 42 0.755686 ATGGAGGCGAGGAATCTCAC 59.244 55.000 0.00 0.00 39.95 3.51
42 43 0.755079 CATGGAGGCGAGGAATCTCA 59.245 55.000 0.00 0.00 39.95 3.27
43 44 0.034616 CCATGGAGGCGAGGAATCTC 59.965 60.000 5.56 0.00 36.69 2.75
44 45 2.140405 CCATGGAGGCGAGGAATCT 58.860 57.895 5.56 0.00 0.00 2.40
45 46 4.787871 CCATGGAGGCGAGGAATC 57.212 61.111 5.56 0.00 0.00 2.52
54 55 3.851955 GCAATGGAGCCATGGAGG 58.148 61.111 18.40 0.00 36.68 4.30
62 63 2.832201 GCTGGAGGGCAATGGAGC 60.832 66.667 0.00 0.00 0.00 4.70
63 64 2.123982 GGCTGGAGGGCAATGGAG 60.124 66.667 0.00 0.00 40.53 3.86
64 65 4.113815 CGGCTGGAGGGCAATGGA 62.114 66.667 0.00 0.00 40.90 3.41
67 68 4.365111 TTGCGGCTGGAGGGCAAT 62.365 61.111 0.00 0.00 41.34 3.56
71 72 3.672295 GACTCTTGCGGCTGGAGGG 62.672 68.421 20.28 10.80 0.00 4.30
72 73 2.125350 GACTCTTGCGGCTGGAGG 60.125 66.667 20.28 0.00 0.00 4.30
73 74 1.739562 GTGACTCTTGCGGCTGGAG 60.740 63.158 16.69 16.69 0.00 3.86
74 75 2.343758 GTGACTCTTGCGGCTGGA 59.656 61.111 0.00 0.00 0.00 3.86
75 76 2.743928 GGTGACTCTTGCGGCTGG 60.744 66.667 0.00 0.00 0.00 4.85
76 77 3.114616 CGGTGACTCTTGCGGCTG 61.115 66.667 0.00 0.00 0.00 4.85
82 83 3.114616 CAGCGGCGGTGACTCTTG 61.115 66.667 33.21 4.39 32.22 3.02
86 87 4.927782 TTTGCAGCGGCGGTGACT 62.928 61.111 39.35 11.37 45.35 3.41
87 88 3.477224 TTTTTGCAGCGGCGGTGAC 62.477 57.895 39.35 29.02 45.35 3.67
88 89 3.212682 TTTTTGCAGCGGCGGTGA 61.213 55.556 39.35 22.55 45.35 4.02
102 103 2.174685 ACAACTTCCTGGCCCTTTTT 57.825 45.000 0.00 0.00 0.00 1.94
103 104 3.322191 TTACAACTTCCTGGCCCTTTT 57.678 42.857 0.00 0.00 0.00 2.27
104 105 3.322191 TTTACAACTTCCTGGCCCTTT 57.678 42.857 0.00 0.00 0.00 3.11
105 106 3.542969 ATTTACAACTTCCTGGCCCTT 57.457 42.857 0.00 0.00 0.00 3.95
106 107 3.076032 AGAATTTACAACTTCCTGGCCCT 59.924 43.478 0.00 0.00 0.00 5.19
107 108 3.431415 AGAATTTACAACTTCCTGGCCC 58.569 45.455 0.00 0.00 0.00 5.80
108 109 3.444034 GGAGAATTTACAACTTCCTGGCC 59.556 47.826 0.00 0.00 0.00 5.36
109 110 3.444034 GGGAGAATTTACAACTTCCTGGC 59.556 47.826 0.00 0.00 0.00 4.85
110 111 4.923415 AGGGAGAATTTACAACTTCCTGG 58.077 43.478 0.00 0.00 38.13 4.45
111 112 6.003950 TGAAGGGAGAATTTACAACTTCCTG 58.996 40.000 0.00 0.00 38.55 3.86
112 113 6.200878 TGAAGGGAGAATTTACAACTTCCT 57.799 37.500 0.00 0.00 40.95 3.36
113 114 6.894339 TTGAAGGGAGAATTTACAACTTCC 57.106 37.500 0.00 0.00 33.73 3.46
114 115 9.031360 GTTTTTGAAGGGAGAATTTACAACTTC 57.969 33.333 0.00 0.00 34.88 3.01
115 116 8.536175 TGTTTTTGAAGGGAGAATTTACAACTT 58.464 29.630 0.00 0.00 0.00 2.66
116 117 8.073467 TGTTTTTGAAGGGAGAATTTACAACT 57.927 30.769 0.00 0.00 0.00 3.16
117 118 8.600625 GTTGTTTTTGAAGGGAGAATTTACAAC 58.399 33.333 0.00 0.00 35.38 3.32
118 119 8.536175 AGTTGTTTTTGAAGGGAGAATTTACAA 58.464 29.630 0.00 0.00 0.00 2.41
119 120 7.978975 CAGTTGTTTTTGAAGGGAGAATTTACA 59.021 33.333 0.00 0.00 0.00 2.41
120 121 7.042725 GCAGTTGTTTTTGAAGGGAGAATTTAC 60.043 37.037 0.00 0.00 0.00 2.01
121 122 6.983890 GCAGTTGTTTTTGAAGGGAGAATTTA 59.016 34.615 0.00 0.00 0.00 1.40
122 123 5.817296 GCAGTTGTTTTTGAAGGGAGAATTT 59.183 36.000 0.00 0.00 0.00 1.82
123 124 5.129320 AGCAGTTGTTTTTGAAGGGAGAATT 59.871 36.000 0.00 0.00 0.00 2.17
124 125 4.651045 AGCAGTTGTTTTTGAAGGGAGAAT 59.349 37.500 0.00 0.00 0.00 2.40
125 126 4.023291 AGCAGTTGTTTTTGAAGGGAGAA 58.977 39.130 0.00 0.00 0.00 2.87
126 127 3.631250 AGCAGTTGTTTTTGAAGGGAGA 58.369 40.909 0.00 0.00 0.00 3.71
127 128 3.381272 TGAGCAGTTGTTTTTGAAGGGAG 59.619 43.478 0.00 0.00 0.00 4.30
128 129 3.360867 TGAGCAGTTGTTTTTGAAGGGA 58.639 40.909 0.00 0.00 0.00 4.20
129 130 3.131046 ACTGAGCAGTTGTTTTTGAAGGG 59.869 43.478 0.00 0.00 38.83 3.95
130 131 4.376340 ACTGAGCAGTTGTTTTTGAAGG 57.624 40.909 0.00 0.00 38.83 3.46
142 143 3.064820 CACCGTTTTTACAACTGAGCAGT 59.935 43.478 0.00 0.00 44.94 4.40
143 144 3.548014 CCACCGTTTTTACAACTGAGCAG 60.548 47.826 0.00 0.00 0.00 4.24
144 145 2.356382 CCACCGTTTTTACAACTGAGCA 59.644 45.455 0.00 0.00 0.00 4.26
145 146 2.614983 TCCACCGTTTTTACAACTGAGC 59.385 45.455 0.00 0.00 0.00 4.26
146 147 3.875134 AGTCCACCGTTTTTACAACTGAG 59.125 43.478 0.00 0.00 0.00 3.35
147 148 3.623960 CAGTCCACCGTTTTTACAACTGA 59.376 43.478 0.00 0.00 35.95 3.41
148 149 3.790789 GCAGTCCACCGTTTTTACAACTG 60.791 47.826 0.00 0.00 36.75 3.16
149 150 2.356695 GCAGTCCACCGTTTTTACAACT 59.643 45.455 0.00 0.00 0.00 3.16
150 151 2.723209 GCAGTCCACCGTTTTTACAAC 58.277 47.619 0.00 0.00 0.00 3.32
151 152 1.331138 CGCAGTCCACCGTTTTTACAA 59.669 47.619 0.00 0.00 0.00 2.41
152 153 0.938713 CGCAGTCCACCGTTTTTACA 59.061 50.000 0.00 0.00 0.00 2.41
153 154 0.385098 GCGCAGTCCACCGTTTTTAC 60.385 55.000 0.30 0.00 0.00 2.01
154 155 1.833434 CGCGCAGTCCACCGTTTTTA 61.833 55.000 8.75 0.00 0.00 1.52
155 156 2.719354 GCGCAGTCCACCGTTTTT 59.281 55.556 0.30 0.00 0.00 1.94
156 157 3.645975 CGCGCAGTCCACCGTTTT 61.646 61.111 8.75 0.00 0.00 2.43
157 158 4.595538 TCGCGCAGTCCACCGTTT 62.596 61.111 8.75 0.00 0.00 3.60
175 176 1.436983 GCTTATCTTCAACCGGCCGG 61.437 60.000 42.17 42.17 42.03 6.13
176 177 0.462047 AGCTTATCTTCAACCGGCCG 60.462 55.000 21.04 21.04 0.00 6.13
177 178 1.751437 AAGCTTATCTTCAACCGGCC 58.249 50.000 0.00 0.00 0.00 6.13
178 179 3.427638 GGAAAAGCTTATCTTCAACCGGC 60.428 47.826 0.00 0.00 32.88 6.13
179 180 4.010349 AGGAAAAGCTTATCTTCAACCGG 58.990 43.478 0.00 0.00 32.88 5.28
180 181 5.629079 AAGGAAAAGCTTATCTTCAACCG 57.371 39.130 0.00 0.00 32.88 4.44
181 182 9.758651 TTTTAAAGGAAAAGCTTATCTTCAACC 57.241 29.630 0.00 0.00 31.90 3.77
217 218 5.045432 ACCCCTCCGTCAACAAATATAAGAA 60.045 40.000 0.00 0.00 0.00 2.52
245 246 2.308570 TGATATGGGCCACTGTGAAACT 59.691 45.455 9.28 0.00 38.04 2.66
329 330 9.201989 ACTACATTGTGAAATGGAGAGAGTATA 57.798 33.333 15.84 0.00 42.46 1.47
331 332 7.323420 CACTACATTGTGAAATGGAGAGAGTA 58.677 38.462 15.84 0.00 42.46 2.59
332 333 6.169094 CACTACATTGTGAAATGGAGAGAGT 58.831 40.000 15.84 3.20 42.46 3.24
333 334 5.064452 GCACTACATTGTGAAATGGAGAGAG 59.936 44.000 15.84 7.57 42.46 3.20
334 335 4.937620 GCACTACATTGTGAAATGGAGAGA 59.062 41.667 15.84 0.00 42.46 3.10
335 336 4.940046 AGCACTACATTGTGAAATGGAGAG 59.060 41.667 15.84 9.94 42.46 3.20
336 337 4.910195 AGCACTACATTGTGAAATGGAGA 58.090 39.130 15.84 0.00 42.46 3.71
337 338 5.633830 AAGCACTACATTGTGAAATGGAG 57.366 39.130 8.77 8.77 44.77 3.86
338 339 5.769662 AGAAAGCACTACATTGTGAAATGGA 59.230 36.000 0.00 0.00 40.12 3.41
339 340 6.017400 AGAAAGCACTACATTGTGAAATGG 57.983 37.500 0.00 0.00 40.12 3.16
340 341 6.906659 AGAGAAAGCACTACATTGTGAAATG 58.093 36.000 0.00 0.00 40.12 2.32
341 342 8.798859 ATAGAGAAAGCACTACATTGTGAAAT 57.201 30.769 0.00 0.00 40.12 2.17
342 343 7.334421 GGATAGAGAAAGCACTACATTGTGAAA 59.666 37.037 0.00 0.00 40.12 2.69
343 344 6.818644 GGATAGAGAAAGCACTACATTGTGAA 59.181 38.462 0.00 0.00 40.12 3.18
344 345 6.341316 GGATAGAGAAAGCACTACATTGTGA 58.659 40.000 0.00 0.00 40.12 3.58
345 346 5.525378 GGGATAGAGAAAGCACTACATTGTG 59.475 44.000 0.00 0.00 40.62 3.33
346 347 5.396884 GGGGATAGAGAAAGCACTACATTGT 60.397 44.000 0.00 0.00 0.00 2.71
347 348 5.059833 GGGGATAGAGAAAGCACTACATTG 58.940 45.833 0.00 0.00 0.00 2.82
348 349 4.202264 CGGGGATAGAGAAAGCACTACATT 60.202 45.833 0.00 0.00 0.00 2.71
349 350 3.322254 CGGGGATAGAGAAAGCACTACAT 59.678 47.826 0.00 0.00 0.00 2.29
350 351 2.693591 CGGGGATAGAGAAAGCACTACA 59.306 50.000 0.00 0.00 0.00 2.74
351 352 2.694109 ACGGGGATAGAGAAAGCACTAC 59.306 50.000 0.00 0.00 0.00 2.73
352 353 2.693591 CACGGGGATAGAGAAAGCACTA 59.306 50.000 0.00 0.00 0.00 2.74
353 354 1.482593 CACGGGGATAGAGAAAGCACT 59.517 52.381 0.00 0.00 0.00 4.40
354 355 1.941325 CACGGGGATAGAGAAAGCAC 58.059 55.000 0.00 0.00 0.00 4.40
355 356 0.178068 GCACGGGGATAGAGAAAGCA 59.822 55.000 0.00 0.00 0.00 3.91
356 357 0.466124 AGCACGGGGATAGAGAAAGC 59.534 55.000 0.00 0.00 0.00 3.51
357 358 2.168521 TGAAGCACGGGGATAGAGAAAG 59.831 50.000 0.00 0.00 0.00 2.62
358 359 2.184533 TGAAGCACGGGGATAGAGAAA 58.815 47.619 0.00 0.00 0.00 2.52
359 360 1.860641 TGAAGCACGGGGATAGAGAA 58.139 50.000 0.00 0.00 0.00 2.87
360 361 1.480954 GTTGAAGCACGGGGATAGAGA 59.519 52.381 0.00 0.00 0.00 3.10
361 362 1.482593 AGTTGAAGCACGGGGATAGAG 59.517 52.381 0.00 0.00 0.00 2.43
362 363 1.568504 AGTTGAAGCACGGGGATAGA 58.431 50.000 0.00 0.00 0.00 1.98
363 364 2.403252 AAGTTGAAGCACGGGGATAG 57.597 50.000 0.00 0.00 0.00 2.08
364 365 2.039216 TCAAAGTTGAAGCACGGGGATA 59.961 45.455 0.00 0.00 33.55 2.59
365 366 1.202879 TCAAAGTTGAAGCACGGGGAT 60.203 47.619 0.00 0.00 33.55 3.85
366 367 0.181587 TCAAAGTTGAAGCACGGGGA 59.818 50.000 0.00 0.00 33.55 4.81
367 368 0.310854 GTCAAAGTTGAAGCACGGGG 59.689 55.000 0.00 0.00 39.21 5.73
368 369 0.310854 GGTCAAAGTTGAAGCACGGG 59.689 55.000 0.00 0.00 39.21 5.28
369 370 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.000 0.00 0.00 39.21 4.94
370 371 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
371 372 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
372 373 5.508200 AAATTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
373 374 7.646526 AGTTAAAATTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
382 383 8.938906 GGTCTTGATAGTTAAAATTACGGTCAA 58.061 33.333 0.00 0.00 0.00 3.18
383 384 7.276218 CGGTCTTGATAGTTAAAATTACGGTCA 59.724 37.037 0.00 0.00 0.00 4.02
384 385 7.489113 TCGGTCTTGATAGTTAAAATTACGGTC 59.511 37.037 0.00 0.00 0.00 4.79
385 386 7.322664 TCGGTCTTGATAGTTAAAATTACGGT 58.677 34.615 0.00 0.00 0.00 4.83
386 387 7.760131 TCGGTCTTGATAGTTAAAATTACGG 57.240 36.000 0.00 0.00 0.00 4.02
387 388 9.632969 CAATCGGTCTTGATAGTTAAAATTACG 57.367 33.333 0.00 0.00 0.00 3.18
390 391 8.458843 CCACAATCGGTCTTGATAGTTAAAATT 58.541 33.333 1.23 0.00 0.00 1.82
391 392 7.415206 GCCACAATCGGTCTTGATAGTTAAAAT 60.415 37.037 1.23 0.00 0.00 1.82
392 393 6.128117 GCCACAATCGGTCTTGATAGTTAAAA 60.128 38.462 1.23 0.00 0.00 1.52
393 394 5.353123 GCCACAATCGGTCTTGATAGTTAAA 59.647 40.000 1.23 0.00 0.00 1.52
394 395 4.873827 GCCACAATCGGTCTTGATAGTTAA 59.126 41.667 1.23 0.00 0.00 2.01
395 396 4.439057 GCCACAATCGGTCTTGATAGTTA 58.561 43.478 1.23 0.00 0.00 2.24
396 397 3.270877 GCCACAATCGGTCTTGATAGTT 58.729 45.455 1.23 0.00 0.00 2.24
397 398 2.738643 CGCCACAATCGGTCTTGATAGT 60.739 50.000 1.23 0.00 0.00 2.12
398 399 1.860950 CGCCACAATCGGTCTTGATAG 59.139 52.381 1.23 0.00 0.00 2.08
399 400 1.472552 CCGCCACAATCGGTCTTGATA 60.473 52.381 0.00 0.00 41.85 2.15
400 401 0.744414 CCGCCACAATCGGTCTTGAT 60.744 55.000 0.00 0.00 41.85 2.57
401 402 1.375396 CCGCCACAATCGGTCTTGA 60.375 57.895 0.00 0.00 41.85 3.02
402 403 2.398554 CCCGCCACAATCGGTCTTG 61.399 63.158 0.66 0.00 45.09 3.02
403 404 2.046314 CCCGCCACAATCGGTCTT 60.046 61.111 0.66 0.00 45.09 3.01
404 405 3.000819 TCCCGCCACAATCGGTCT 61.001 61.111 0.66 0.00 45.09 3.85
405 406 2.511600 CTCCCGCCACAATCGGTC 60.512 66.667 0.66 0.00 45.09 4.79
406 407 4.778143 GCTCCCGCCACAATCGGT 62.778 66.667 0.66 0.00 45.09 4.69
407 408 4.776322 TGCTCCCGCCACAATCGG 62.776 66.667 0.00 0.00 46.05 4.18
408 409 1.861542 TTTTGCTCCCGCCACAATCG 61.862 55.000 0.00 0.00 34.43 3.34
409 410 0.109132 CTTTTGCTCCCGCCACAATC 60.109 55.000 0.00 0.00 34.43 2.67
410 411 0.827507 ACTTTTGCTCCCGCCACAAT 60.828 50.000 0.00 0.00 34.43 2.71
411 412 1.040339 AACTTTTGCTCCCGCCACAA 61.040 50.000 0.00 0.00 34.43 3.33
412 413 0.179015 TAACTTTTGCTCCCGCCACA 60.179 50.000 0.00 0.00 34.43 4.17
413 414 1.173913 ATAACTTTTGCTCCCGCCAC 58.826 50.000 0.00 0.00 34.43 5.01
414 415 2.791347 TATAACTTTTGCTCCCGCCA 57.209 45.000 0.00 0.00 34.43 5.69
415 416 3.211045 TGATATAACTTTTGCTCCCGCC 58.789 45.455 0.00 0.00 34.43 6.13
416 417 3.877508 ACTGATATAACTTTTGCTCCCGC 59.122 43.478 0.00 0.00 0.00 6.13
417 418 5.116180 TCACTGATATAACTTTTGCTCCCG 58.884 41.667 0.00 0.00 0.00 5.14
418 419 7.573968 ATTCACTGATATAACTTTTGCTCCC 57.426 36.000 0.00 0.00 0.00 4.30
419 420 7.852945 CGAATTCACTGATATAACTTTTGCTCC 59.147 37.037 6.22 0.00 0.00 4.70
420 421 8.391106 ACGAATTCACTGATATAACTTTTGCTC 58.609 33.333 6.22 0.00 0.00 4.26
421 422 8.268850 ACGAATTCACTGATATAACTTTTGCT 57.731 30.769 6.22 0.00 0.00 3.91
433 434 8.932791 ACGTCTTTTAAATACGAATTCACTGAT 58.067 29.630 22.86 2.15 39.80 2.90
434 435 8.301730 ACGTCTTTTAAATACGAATTCACTGA 57.698 30.769 22.86 0.00 39.80 3.41
435 436 8.928844 AACGTCTTTTAAATACGAATTCACTG 57.071 30.769 22.86 0.00 39.80 3.66
436 437 9.940166 AAAACGTCTTTTAAATACGAATTCACT 57.060 25.926 22.86 3.79 39.80 3.41
462 463 8.776470 CGGCGGGAGAAAAAGTTATATAATTAA 58.224 33.333 0.00 0.00 0.00 1.40
463 464 7.095102 GCGGCGGGAGAAAAAGTTATATAATTA 60.095 37.037 9.78 0.00 0.00 1.40
464 465 6.293790 GCGGCGGGAGAAAAAGTTATATAATT 60.294 38.462 9.78 0.00 0.00 1.40
465 466 5.180680 GCGGCGGGAGAAAAAGTTATATAAT 59.819 40.000 9.78 0.00 0.00 1.28
466 467 4.512571 GCGGCGGGAGAAAAAGTTATATAA 59.487 41.667 9.78 0.00 0.00 0.98
467 468 4.060205 GCGGCGGGAGAAAAAGTTATATA 58.940 43.478 9.78 0.00 0.00 0.86
468 469 2.876550 GCGGCGGGAGAAAAAGTTATAT 59.123 45.455 9.78 0.00 0.00 0.86
469 470 2.282407 GCGGCGGGAGAAAAAGTTATA 58.718 47.619 9.78 0.00 0.00 0.98
470 471 1.092348 GCGGCGGGAGAAAAAGTTAT 58.908 50.000 9.78 0.00 0.00 1.89
471 472 0.250381 TGCGGCGGGAGAAAAAGTTA 60.250 50.000 9.78 0.00 0.00 2.24
472 473 1.515521 CTGCGGCGGGAGAAAAAGTT 61.516 55.000 9.78 0.00 32.53 2.66
473 474 1.966451 CTGCGGCGGGAGAAAAAGT 60.966 57.895 9.78 0.00 32.53 2.66
474 475 1.912371 GACTGCGGCGGGAGAAAAAG 61.912 60.000 19.55 0.00 35.29 2.27
475 476 1.964373 GACTGCGGCGGGAGAAAAA 60.964 57.895 19.55 0.00 35.29 1.94
476 477 2.358247 GACTGCGGCGGGAGAAAA 60.358 61.111 19.55 0.00 35.29 2.29
477 478 4.735132 CGACTGCGGCGGGAGAAA 62.735 66.667 19.55 0.00 35.29 2.52
487 488 0.732880 AACGAATGAGACCGACTGCG 60.733 55.000 0.00 0.00 37.24 5.18
488 489 2.273370 TAACGAATGAGACCGACTGC 57.727 50.000 0.00 0.00 0.00 4.40
489 490 5.779806 AATTTAACGAATGAGACCGACTG 57.220 39.130 0.00 0.00 0.00 3.51
490 491 7.011109 CCATAAATTTAACGAATGAGACCGACT 59.989 37.037 1.21 0.00 0.00 4.18
491 492 7.123830 CCATAAATTTAACGAATGAGACCGAC 58.876 38.462 1.21 0.00 0.00 4.79
492 493 6.819649 ACCATAAATTTAACGAATGAGACCGA 59.180 34.615 1.21 0.00 0.00 4.69
493 494 7.011828 ACCATAAATTTAACGAATGAGACCG 57.988 36.000 1.21 0.00 0.00 4.79
494 495 7.981142 TGACCATAAATTTAACGAATGAGACC 58.019 34.615 1.21 0.00 0.00 3.85
495 496 9.834628 TTTGACCATAAATTTAACGAATGAGAC 57.165 29.630 1.21 0.00 0.00 3.36
497 498 9.840427 ACTTTGACCATAAATTTAACGAATGAG 57.160 29.630 1.21 0.01 0.00 2.90
500 501 9.337091 CGAACTTTGACCATAAATTTAACGAAT 57.663 29.630 1.21 0.00 0.00 3.34
501 502 8.557864 TCGAACTTTGACCATAAATTTAACGAA 58.442 29.630 1.21 1.12 0.00 3.85
502 503 8.011106 GTCGAACTTTGACCATAAATTTAACGA 58.989 33.333 1.21 0.00 0.00 3.85
503 504 8.142348 GTCGAACTTTGACCATAAATTTAACG 57.858 34.615 1.21 0.00 0.00 3.18
538 539 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
539 540 0.941542 TCAAAATATAGTGCGCCCGC 59.058 50.000 4.18 5.60 42.35 6.13
540 541 3.684103 TTTCAAAATATAGTGCGCCCG 57.316 42.857 4.18 0.00 0.00 6.13
541 542 4.037446 TCCATTTCAAAATATAGTGCGCCC 59.963 41.667 4.18 0.00 0.00 6.13
542 543 5.181690 TCCATTTCAAAATATAGTGCGCC 57.818 39.130 4.18 0.00 0.00 6.53
543 544 5.215160 CCTCCATTTCAAAATATAGTGCGC 58.785 41.667 0.00 0.00 0.00 6.09
544 545 5.530915 TCCCTCCATTTCAAAATATAGTGCG 59.469 40.000 0.00 0.00 0.00 5.34
545 546 6.547510 ACTCCCTCCATTTCAAAATATAGTGC 59.452 38.462 0.00 0.00 0.00 4.40
546 547 9.799106 ATACTCCCTCCATTTCAAAATATAGTG 57.201 33.333 0.00 0.00 0.00 2.74
550 551 9.492730 ACAAATACTCCCTCCATTTCAAAATAT 57.507 29.630 0.00 0.00 0.00 1.28
551 552 8.893563 ACAAATACTCCCTCCATTTCAAAATA 57.106 30.769 0.00 0.00 0.00 1.40
552 553 7.797121 ACAAATACTCCCTCCATTTCAAAAT 57.203 32.000 0.00 0.00 0.00 1.82
553 554 7.610580 AACAAATACTCCCTCCATTTCAAAA 57.389 32.000 0.00 0.00 0.00 2.44
554 555 7.288852 TGAAACAAATACTCCCTCCATTTCAAA 59.711 33.333 0.00 0.00 32.29 2.69
555 556 6.780031 TGAAACAAATACTCCCTCCATTTCAA 59.220 34.615 0.00 0.00 32.29 2.69
556 557 6.310941 TGAAACAAATACTCCCTCCATTTCA 58.689 36.000 0.00 0.00 32.66 2.69
557 558 6.834168 TGAAACAAATACTCCCTCCATTTC 57.166 37.500 0.00 0.00 0.00 2.17
558 559 8.336235 TCTATGAAACAAATACTCCCTCCATTT 58.664 33.333 0.00 0.00 0.00 2.32
559 560 7.775561 GTCTATGAAACAAATACTCCCTCCATT 59.224 37.037 0.00 0.00 0.00 3.16
560 561 7.092444 TGTCTATGAAACAAATACTCCCTCCAT 60.092 37.037 0.00 0.00 0.00 3.41
561 562 6.214615 TGTCTATGAAACAAATACTCCCTCCA 59.785 38.462 0.00 0.00 0.00 3.86
562 563 6.650120 TGTCTATGAAACAAATACTCCCTCC 58.350 40.000 0.00 0.00 0.00 4.30
563 564 9.482627 CTATGTCTATGAAACAAATACTCCCTC 57.517 37.037 0.00 0.00 0.00 4.30
564 565 9.213777 TCTATGTCTATGAAACAAATACTCCCT 57.786 33.333 0.00 0.00 0.00 4.20
565 566 9.482627 CTCTATGTCTATGAAACAAATACTCCC 57.517 37.037 0.00 0.00 0.00 4.30
608 609 4.080356 TCTGTGGCCTATTCTGCACTTATT 60.080 41.667 3.32 0.00 0.00 1.40
609 610 3.455910 TCTGTGGCCTATTCTGCACTTAT 59.544 43.478 3.32 0.00 0.00 1.73
611 612 1.630369 TCTGTGGCCTATTCTGCACTT 59.370 47.619 3.32 0.00 0.00 3.16
622 628 4.817318 TTTTGAAGTTTTTCTGTGGCCT 57.183 36.364 3.32 0.00 34.31 5.19
683 693 2.586648 AAGGGGCTTGTAGGAACTTG 57.413 50.000 0.00 0.00 41.75 3.16
785 795 3.098377 GACGACGACGAGGAGGAGC 62.098 68.421 15.32 0.00 42.66 4.70
792 802 4.517703 GCGAGGGACGACGACGAG 62.518 72.222 15.32 0.00 45.77 4.18
795 805 3.126225 AGAGCGAGGGACGACGAC 61.126 66.667 0.00 0.00 45.77 4.34
797 807 3.125573 TCAGAGCGAGGGACGACG 61.126 66.667 0.00 0.00 45.77 5.12
798 808 2.486042 GTCAGAGCGAGGGACGAC 59.514 66.667 0.00 0.00 45.77 4.34
799 809 2.750637 GGTCAGAGCGAGGGACGA 60.751 66.667 0.00 0.00 45.77 4.20
800 810 3.062466 TGGTCAGAGCGAGGGACG 61.062 66.667 0.00 0.00 45.66 4.79
872 882 2.079925 GTCTGATTGCAAGGGAGTGAC 58.920 52.381 4.94 3.95 0.00 3.67
891 901 1.000612 GGACGAGGAGGAGGGAAGT 59.999 63.158 0.00 0.00 0.00 3.01
906 917 1.258445 ACATGGAGGACGGTGAGGAC 61.258 60.000 0.00 0.00 0.00 3.85
936 948 3.068881 CAGGGCCTGGACGAGAAA 58.931 61.111 26.34 0.00 0.00 2.52
1072 1084 2.032681 GCGCCAACCTGGTTCTCT 59.967 61.111 9.62 0.00 40.46 3.10
1100 1112 1.187087 AGAGAGGTGGATGAACGGAC 58.813 55.000 0.00 0.00 0.00 4.79
1104 1116 3.181480 GCAGAGTAGAGAGGTGGATGAAC 60.181 52.174 0.00 0.00 0.00 3.18
1273 1316 4.142556 CCGCGGAAACACCAATACTTATTT 60.143 41.667 24.07 0.00 38.90 1.40
1284 1327 0.391263 ATCTTCTCCGCGGAAACACC 60.391 55.000 30.53 0.00 0.00 4.16
1369 1463 6.882458 AAAACAATACTAGTAGCAGTACGC 57.118 37.500 8.85 2.08 42.91 4.42
1370 1464 8.160342 CACAAAAACAATACTAGTAGCAGTACG 58.840 37.037 8.85 0.00 33.94 3.67
1371 1465 8.985805 ACACAAAAACAATACTAGTAGCAGTAC 58.014 33.333 8.85 0.00 33.94 2.73
1373 1467 8.985805 GTACACAAAAACAATACTAGTAGCAGT 58.014 33.333 8.85 4.04 0.00 4.40
1374 1468 8.440833 GGTACACAAAAACAATACTAGTAGCAG 58.559 37.037 8.85 3.42 0.00 4.24
1375 1469 7.932491 TGGTACACAAAAACAATACTAGTAGCA 59.068 33.333 8.85 0.00 35.78 3.49
1376 1470 8.314143 TGGTACACAAAAACAATACTAGTAGC 57.686 34.615 8.85 0.00 0.00 3.58
1396 1490 3.077359 AGTTCTGCATGAGCTTTGGTAC 58.923 45.455 0.00 0.00 42.74 3.34
1523 1617 0.951558 CCACGCAAAACAAGTAGGCT 59.048 50.000 0.00 0.00 0.00 4.58
1531 1625 0.595588 CCATAGCACCACGCAAAACA 59.404 50.000 0.00 0.00 46.13 2.83
1532 1626 0.732538 GCCATAGCACCACGCAAAAC 60.733 55.000 0.00 0.00 46.13 2.43
1533 1627 1.175347 TGCCATAGCACCACGCAAAA 61.175 50.000 0.00 0.00 46.52 2.44
1534 1628 1.602041 TGCCATAGCACCACGCAAA 60.602 52.632 0.00 0.00 46.52 3.68
1535 1629 2.033294 TGCCATAGCACCACGCAA 59.967 55.556 0.00 0.00 46.52 4.85
1551 1645 4.868067 AGAAAAGAAGACAAGCAAGCATG 58.132 39.130 0.00 0.00 0.00 4.06
1552 1646 4.320057 CGAGAAAAGAAGACAAGCAAGCAT 60.320 41.667 0.00 0.00 0.00 3.79
1553 1647 3.002656 CGAGAAAAGAAGACAAGCAAGCA 59.997 43.478 0.00 0.00 0.00 3.91
1554 1648 3.549574 CGAGAAAAGAAGACAAGCAAGC 58.450 45.455 0.00 0.00 0.00 4.01
1555 1649 3.549574 GCGAGAAAAGAAGACAAGCAAG 58.450 45.455 0.00 0.00 0.00 4.01
1556 1650 2.290641 GGCGAGAAAAGAAGACAAGCAA 59.709 45.455 0.00 0.00 0.00 3.91
1557 1651 1.873591 GGCGAGAAAAGAAGACAAGCA 59.126 47.619 0.00 0.00 0.00 3.91
1558 1652 1.136224 CGGCGAGAAAAGAAGACAAGC 60.136 52.381 0.00 0.00 0.00 4.01
1559 1653 2.135933 ACGGCGAGAAAAGAAGACAAG 58.864 47.619 16.62 0.00 0.00 3.16
1560 1654 2.234300 ACGGCGAGAAAAGAAGACAA 57.766 45.000 16.62 0.00 0.00 3.18
1561 1655 2.234300 AACGGCGAGAAAAGAAGACA 57.766 45.000 16.62 0.00 0.00 3.41
1562 1656 3.062234 CCATAACGGCGAGAAAAGAAGAC 59.938 47.826 16.62 0.00 0.00 3.01
1662 1756 7.551974 TGAATTTCTTTCTCATTTTTGTGCCAA 59.448 29.630 0.00 0.00 35.23 4.52
1677 1772 9.541143 TGACAAAACCCTATTTGAATTTCTTTC 57.459 29.630 6.76 0.00 41.73 2.62
1686 1781 7.473735 TGCATTATGACAAAACCCTATTTGA 57.526 32.000 6.76 0.00 41.73 2.69
1687 1782 7.225145 CCATGCATTATGACAAAACCCTATTTG 59.775 37.037 0.00 0.00 39.21 2.32
1690 1785 6.135454 TCCATGCATTATGACAAAACCCTAT 58.865 36.000 0.00 0.00 39.21 2.57
1695 1962 5.170021 TGCTTCCATGCATTATGACAAAAC 58.830 37.500 0.00 0.00 39.21 2.43
1697 1964 5.402997 TTGCTTCCATGCATTATGACAAA 57.597 34.783 0.00 0.00 42.96 2.83
1707 1974 2.568062 ACCATTGAATTGCTTCCATGCA 59.432 40.909 0.00 0.00 41.65 3.96
1709 1976 5.484715 AGAAACCATTGAATTGCTTCCATG 58.515 37.500 0.00 0.00 35.37 3.66
1711 1978 4.321156 CGAGAAACCATTGAATTGCTTCCA 60.321 41.667 0.00 0.00 0.00 3.53
1723 1990 6.150976 TCAGATTGTTTATGCGAGAAACCATT 59.849 34.615 5.72 0.00 36.20 3.16
1724 1991 5.647658 TCAGATTGTTTATGCGAGAAACCAT 59.352 36.000 5.72 1.32 36.20 3.55
1725 1992 5.000591 TCAGATTGTTTATGCGAGAAACCA 58.999 37.500 5.72 0.00 36.20 3.67
1726 1993 5.545658 TCAGATTGTTTATGCGAGAAACC 57.454 39.130 5.72 0.00 36.20 3.27
1727 1994 6.524586 CCTTTCAGATTGTTTATGCGAGAAAC 59.475 38.462 0.00 0.00 37.32 2.78
1728 1995 6.206634 ACCTTTCAGATTGTTTATGCGAGAAA 59.793 34.615 0.00 0.00 0.00 2.52
1729 1996 5.705441 ACCTTTCAGATTGTTTATGCGAGAA 59.295 36.000 0.00 0.00 0.00 2.87
1730 1997 5.245531 ACCTTTCAGATTGTTTATGCGAGA 58.754 37.500 0.00 0.00 0.00 4.04
1731 1998 5.551760 ACCTTTCAGATTGTTTATGCGAG 57.448 39.130 0.00 0.00 0.00 5.03
1732 1999 5.471797 TGAACCTTTCAGATTGTTTATGCGA 59.528 36.000 0.00 0.00 34.08 5.10
1733 2000 5.698832 TGAACCTTTCAGATTGTTTATGCG 58.301 37.500 0.00 0.00 34.08 4.73
1734 2001 6.587608 CCTTGAACCTTTCAGATTGTTTATGC 59.412 38.462 0.00 0.00 41.38 3.14
1735 2002 6.587608 GCCTTGAACCTTTCAGATTGTTTATG 59.412 38.462 0.00 0.00 41.38 1.90
1736 2003 6.570378 CGCCTTGAACCTTTCAGATTGTTTAT 60.570 38.462 0.00 0.00 41.38 1.40
1737 2004 5.278266 CGCCTTGAACCTTTCAGATTGTTTA 60.278 40.000 0.00 0.00 41.38 2.01
1761 2029 4.156739 CCTGGCTTCCACTAAAATCTGAAC 59.843 45.833 0.00 0.00 0.00 3.18
1786 2054 6.344500 TCCAGCTATTTTGCAAGTTGAAAAA 58.656 32.000 21.39 21.39 39.07 1.94
1787 2055 5.911752 TCCAGCTATTTTGCAAGTTGAAAA 58.088 33.333 7.16 5.89 34.99 2.29
1793 2061 3.439857 TCCTCCAGCTATTTTGCAAGT 57.560 42.857 0.00 0.00 34.99 3.16
1794 2062 4.789012 TTTCCTCCAGCTATTTTGCAAG 57.211 40.909 0.00 0.00 34.99 4.01
1795 2063 4.588528 ACTTTTCCTCCAGCTATTTTGCAA 59.411 37.500 0.00 0.00 34.99 4.08
1796 2064 4.151883 ACTTTTCCTCCAGCTATTTTGCA 58.848 39.130 0.00 0.00 34.99 4.08
1797 2065 4.460731 AGACTTTTCCTCCAGCTATTTTGC 59.539 41.667 0.00 0.00 0.00 3.68
1798 2066 5.105997 CCAGACTTTTCCTCCAGCTATTTTG 60.106 44.000 0.00 0.00 0.00 2.44
1799 2067 5.012893 CCAGACTTTTCCTCCAGCTATTTT 58.987 41.667 0.00 0.00 0.00 1.82
1800 2068 4.289672 TCCAGACTTTTCCTCCAGCTATTT 59.710 41.667 0.00 0.00 0.00 1.40
1801 2069 3.846588 TCCAGACTTTTCCTCCAGCTATT 59.153 43.478 0.00 0.00 0.00 1.73
1802 2070 3.454858 TCCAGACTTTTCCTCCAGCTAT 58.545 45.455 0.00 0.00 0.00 2.97
1803 2071 2.902608 TCCAGACTTTTCCTCCAGCTA 58.097 47.619 0.00 0.00 0.00 3.32
1804 2072 1.734655 TCCAGACTTTTCCTCCAGCT 58.265 50.000 0.00 0.00 0.00 4.24
1805 2073 2.431454 CTTCCAGACTTTTCCTCCAGC 58.569 52.381 0.00 0.00 0.00 4.85
1806 2074 2.431454 GCTTCCAGACTTTTCCTCCAG 58.569 52.381 0.00 0.00 0.00 3.86
1807 2075 1.270839 CGCTTCCAGACTTTTCCTCCA 60.271 52.381 0.00 0.00 0.00 3.86
1808 2076 1.002087 TCGCTTCCAGACTTTTCCTCC 59.998 52.381 0.00 0.00 0.00 4.30
1809 2077 2.457366 TCGCTTCCAGACTTTTCCTC 57.543 50.000 0.00 0.00 0.00 3.71
1810 2078 2.930826 TTCGCTTCCAGACTTTTCCT 57.069 45.000 0.00 0.00 0.00 3.36
1811 2079 6.706270 TGATATATTCGCTTCCAGACTTTTCC 59.294 38.462 0.00 0.00 0.00 3.13
1812 2080 7.653713 TCTGATATATTCGCTTCCAGACTTTTC 59.346 37.037 0.00 0.00 0.00 2.29
1813 2081 7.500992 TCTGATATATTCGCTTCCAGACTTTT 58.499 34.615 0.00 0.00 0.00 2.27
1814 2082 7.055667 TCTGATATATTCGCTTCCAGACTTT 57.944 36.000 0.00 0.00 0.00 2.66
1815 2083 6.656632 TCTGATATATTCGCTTCCAGACTT 57.343 37.500 0.00 0.00 0.00 3.01
1816 2084 6.656632 TTCTGATATATTCGCTTCCAGACT 57.343 37.500 0.00 0.00 0.00 3.24
1817 2085 7.600375 TGATTTCTGATATATTCGCTTCCAGAC 59.400 37.037 0.00 0.00 0.00 3.51
1818 2086 7.600375 GTGATTTCTGATATATTCGCTTCCAGA 59.400 37.037 0.00 0.00 0.00 3.86
1819 2087 7.601886 AGTGATTTCTGATATATTCGCTTCCAG 59.398 37.037 0.00 0.00 0.00 3.86
1820 2088 7.445121 AGTGATTTCTGATATATTCGCTTCCA 58.555 34.615 0.00 0.00 0.00 3.53
1821 2089 7.897575 AGTGATTTCTGATATATTCGCTTCC 57.102 36.000 0.00 0.00 0.00 3.46
1822 2090 9.847706 TCTAGTGATTTCTGATATATTCGCTTC 57.152 33.333 2.21 0.00 0.00 3.86
1833 2101 8.924511 TTTCCAACTTTCTAGTGATTTCTGAT 57.075 30.769 0.00 0.00 34.01 2.90
1834 2102 8.621286 GTTTTCCAACTTTCTAGTGATTTCTGA 58.379 33.333 0.00 0.00 34.01 3.27
1835 2103 7.862873 GGTTTTCCAACTTTCTAGTGATTTCTG 59.137 37.037 0.00 0.00 40.31 3.02
1836 2104 7.780271 AGGTTTTCCAACTTTCTAGTGATTTCT 59.220 33.333 0.00 0.00 43.73 2.52
1837 2105 7.941919 AGGTTTTCCAACTTTCTAGTGATTTC 58.058 34.615 0.00 0.00 43.73 2.17
1838 2106 7.898014 AGGTTTTCCAACTTTCTAGTGATTT 57.102 32.000 0.00 0.00 43.73 2.17
1840 2108 9.668497 GTATAGGTTTTCCAACTTTCTAGTGAT 57.332 33.333 0.00 0.00 43.73 3.06
1841 2109 8.877195 AGTATAGGTTTTCCAACTTTCTAGTGA 58.123 33.333 0.00 0.00 43.73 3.41
1842 2110 8.936864 CAGTATAGGTTTTCCAACTTTCTAGTG 58.063 37.037 0.00 0.00 43.73 2.74
1843 2111 8.657712 ACAGTATAGGTTTTCCAACTTTCTAGT 58.342 33.333 0.00 0.00 43.73 2.57
1845 2113 9.933723 GTACAGTATAGGTTTTCCAACTTTCTA 57.066 33.333 0.00 0.00 43.73 2.10
1846 2114 7.601508 CGTACAGTATAGGTTTTCCAACTTTCT 59.398 37.037 0.00 0.00 43.73 2.52
1847 2115 7.622880 GCGTACAGTATAGGTTTTCCAACTTTC 60.623 40.741 0.00 0.00 43.73 2.62
1848 2116 6.148315 GCGTACAGTATAGGTTTTCCAACTTT 59.852 38.462 0.00 0.00 43.73 2.66
1862 2130 9.620660 CTGTCATGTTATAATGCGTACAGTATA 57.379 33.333 0.00 0.00 38.07 1.47
1866 2134 6.918022 TCTCTGTCATGTTATAATGCGTACAG 59.082 38.462 0.00 0.00 34.00 2.74
1906 2174 9.944376 GGATAATCCTTCAGCTACACAATTATA 57.056 33.333 0.00 0.00 32.53 0.98
1907 2175 7.604164 CGGATAATCCTTCAGCTACACAATTAT 59.396 37.037 0.00 0.00 33.30 1.28
1908 2176 6.929049 CGGATAATCCTTCAGCTACACAATTA 59.071 38.462 0.00 0.00 33.30 1.40
1920 2188 1.476833 GCAAGGCCGGATAATCCTTCA 60.477 52.381 5.05 0.00 38.08 3.02
1922 2190 0.550914 TGCAAGGCCGGATAATCCTT 59.449 50.000 5.05 4.77 40.60 3.36
1924 2192 1.067060 GTTTGCAAGGCCGGATAATCC 59.933 52.381 5.05 0.00 0.00 3.01
1966 2234 5.039920 TGCACTGACATAATCTAGCCAAT 57.960 39.130 0.00 0.00 0.00 3.16
1969 2237 4.054671 GACTGCACTGACATAATCTAGCC 58.945 47.826 0.00 0.00 0.00 3.93
1971 2239 5.175090 TCGACTGCACTGACATAATCTAG 57.825 43.478 0.00 0.00 0.00 2.43
1984 2258 3.181534 TCGAAATTCGAAATCGACTGCAC 60.182 43.478 25.99 0.00 46.90 4.57
1998 2272 2.234187 GAACAGCTTGCGTCGAAATTC 58.766 47.619 0.00 0.00 0.00 2.17
2062 2337 5.652452 ACTCTGAAGCTTAAAAACAACCAGT 59.348 36.000 0.00 0.00 0.00 4.00
2115 2403 4.795278 CAGTTCTGCACAGTGAAAAGAAAC 59.205 41.667 4.15 5.48 0.00 2.78
2150 2438 7.065923 CCCTAGAACTAGACAACCTTATTTTGC 59.934 40.741 10.04 0.00 35.21 3.68
2158 2475 6.265304 AGATTTCCCTAGAACTAGACAACCT 58.735 40.000 10.04 0.00 35.21 3.50
2207 2524 6.094719 TGCAAGATCAAGCAACATTAACATC 58.905 36.000 9.33 0.00 37.90 3.06
2251 2571 8.779561 CAAAGAATCGAACGAATTAATCAAGTG 58.220 33.333 0.12 0.00 0.00 3.16
2268 2588 2.754552 TGATGGAAAGGGCAAAGAATCG 59.245 45.455 0.00 0.00 0.00 3.34
2275 2595 4.158786 TCTGAATTTGATGGAAAGGGCAA 58.841 39.130 0.00 0.00 0.00 4.52
2276 2596 3.777087 TCTGAATTTGATGGAAAGGGCA 58.223 40.909 0.00 0.00 0.00 5.36
2281 2601 6.434965 TGAGATGCTTCTGAATTTGATGGAAA 59.565 34.615 6.88 0.00 30.30 3.13
2287 2607 3.125829 GCGTGAGATGCTTCTGAATTTGA 59.874 43.478 6.88 0.00 30.30 2.69
2296 2616 1.543941 CGATCCGCGTGAGATGCTTC 61.544 60.000 4.92 0.00 34.64 3.86
2395 2715 3.009714 GGTGGAGAGGTGGGTCCC 61.010 72.222 0.00 0.00 36.75 4.46
2398 2718 2.603776 GACGGTGGAGAGGTGGGT 60.604 66.667 0.00 0.00 0.00 4.51
2507 2827 0.740737 GCACAGGTTTGCAGTGAACT 59.259 50.000 7.18 0.00 42.49 3.01
2510 2830 1.024271 GAAGCACAGGTTTGCAGTGA 58.976 50.000 7.18 0.00 45.62 3.41
2535 2855 1.590932 AGGAGATCATGCGACAATGC 58.409 50.000 0.00 0.00 0.00 3.56
2538 2858 2.766263 AGGTAAGGAGATCATGCGACAA 59.234 45.455 0.00 0.00 0.00 3.18
2540 2860 2.625790 AGAGGTAAGGAGATCATGCGAC 59.374 50.000 0.00 0.00 0.00 5.19
2543 2863 3.563390 GCAAAGAGGTAAGGAGATCATGC 59.437 47.826 0.00 0.00 0.00 4.06
2544 2864 5.033589 AGCAAAGAGGTAAGGAGATCATG 57.966 43.478 0.00 0.00 0.00 3.07
2545 2865 5.435291 CAAGCAAAGAGGTAAGGAGATCAT 58.565 41.667 0.00 0.00 0.00 2.45
2548 2869 3.054065 CCCAAGCAAAGAGGTAAGGAGAT 60.054 47.826 0.00 0.00 0.00 2.75
2555 2876 0.251165 GCCACCCAAGCAAAGAGGTA 60.251 55.000 0.00 0.00 0.00 3.08
2558 2879 1.662044 GTGCCACCCAAGCAAAGAG 59.338 57.895 0.00 0.00 43.02 2.85
2705 3026 1.071542 TCCAGGAGCAAAACGATCACA 59.928 47.619 0.00 0.00 0.00 3.58
2747 3068 1.978617 CGGCCCATTCTGCAGGTTT 60.979 57.895 15.13 0.00 0.00 3.27
2811 3132 8.020819 CGAAACCAGCTACTAAAATGAAAATGA 58.979 33.333 0.00 0.00 0.00 2.57
2812 3133 7.201350 GCGAAACCAGCTACTAAAATGAAAATG 60.201 37.037 0.00 0.00 0.00 2.32
2813 3134 6.806739 GCGAAACCAGCTACTAAAATGAAAAT 59.193 34.615 0.00 0.00 0.00 1.82
2814 3135 6.146898 GCGAAACCAGCTACTAAAATGAAAA 58.853 36.000 0.00 0.00 0.00 2.29
2815 3136 5.615984 CGCGAAACCAGCTACTAAAATGAAA 60.616 40.000 0.00 0.00 0.00 2.69
2816 3137 4.142988 CGCGAAACCAGCTACTAAAATGAA 60.143 41.667 0.00 0.00 0.00 2.57
2817 3138 3.369756 CGCGAAACCAGCTACTAAAATGA 59.630 43.478 0.00 0.00 0.00 2.57
3023 3346 4.101585 TCTCTTCTGCTTTCTCTGAACCAA 59.898 41.667 0.00 0.00 0.00 3.67
3031 3354 6.918022 GCTAGTATCTTCTCTTCTGCTTTCTC 59.082 42.308 0.00 0.00 0.00 2.87
3034 3357 6.071108 TGTGCTAGTATCTTCTCTTCTGCTTT 60.071 38.462 0.00 0.00 0.00 3.51
3037 3360 5.255710 TGTGCTAGTATCTTCTCTTCTGC 57.744 43.478 0.00 0.00 0.00 4.26
3039 3362 9.238368 GGTATATGTGCTAGTATCTTCTCTTCT 57.762 37.037 0.00 0.00 0.00 2.85
3040 3363 8.463607 GGGTATATGTGCTAGTATCTTCTCTTC 58.536 40.741 0.00 0.00 0.00 2.87
3041 3364 7.121463 CGGGTATATGTGCTAGTATCTTCTCTT 59.879 40.741 0.00 0.00 0.00 2.85
3043 3366 6.374894 ACGGGTATATGTGCTAGTATCTTCTC 59.625 42.308 0.00 0.00 0.00 2.87
3044 3367 6.151312 CACGGGTATATGTGCTAGTATCTTCT 59.849 42.308 0.00 0.00 0.00 2.85
3045 3368 6.323266 CACGGGTATATGTGCTAGTATCTTC 58.677 44.000 0.00 0.00 0.00 2.87
3046 3369 6.268825 CACGGGTATATGTGCTAGTATCTT 57.731 41.667 0.00 0.00 0.00 2.40
3047 3370 5.899120 CACGGGTATATGTGCTAGTATCT 57.101 43.478 0.00 0.00 0.00 1.98
3063 3386 3.669344 CCATTGCAACGCACGGGT 61.669 61.111 0.00 0.00 38.71 5.28
3164 3491 1.174712 ACCCGACGAAACCGAGAAGA 61.175 55.000 0.00 0.00 0.00 2.87
3368 3721 9.833894 CGTTTTCTGAAAGTGTTCATAATTTTG 57.166 29.630 2.75 0.00 42.85 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.