Multiple sequence alignment - TraesCS6A01G122100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G122100 chr6A 100.000 5785 0 0 407 6191 94226328 94232112 0.000000e+00 10683.0
1 TraesCS6A01G122100 chr6A 83.359 637 68 21 5587 6188 94212395 94211762 7.010000e-154 555.0
2 TraesCS6A01G122100 chr6A 89.017 346 36 2 1078 1422 549045515 549045171 1.590000e-115 427.0
3 TraesCS6A01G122100 chr6A 100.000 189 0 0 1 189 94225922 94226110 3.550000e-92 350.0
4 TraesCS6A01G122100 chr6A 88.208 212 22 2 1547 1758 549044642 549044434 3.710000e-62 250.0
5 TraesCS6A01G122100 chr6A 89.474 57 4 2 4199 4255 94230065 94230119 3.100000e-08 71.3
6 TraesCS6A01G122100 chr6A 89.474 57 4 2 4144 4198 94230120 94230176 3.100000e-08 71.3
7 TraesCS6A01G122100 chr6B 90.047 2130 120 44 4080 6154 151375574 151377666 0.000000e+00 2675.0
8 TraesCS6A01G122100 chr6B 87.914 2292 99 64 429 2615 151371857 151374075 0.000000e+00 2534.0
9 TraesCS6A01G122100 chr6B 86.753 1087 80 28 3057 4099 151374494 151375560 0.000000e+00 1151.0
10 TraesCS6A01G122100 chr6B 82.794 494 61 13 5718 6189 151304853 151304362 2.670000e-113 420.0
11 TraesCS6A01G122100 chr6B 87.536 345 43 0 1078 1422 603147873 603147529 3.480000e-107 399.0
12 TraesCS6A01G122100 chr6B 93.103 232 4 2 2742 2973 151374226 151374445 4.630000e-86 329.0
13 TraesCS6A01G122100 chr6B 87.736 212 23 2 1547 1758 603146885 603146677 1.720000e-60 244.0
14 TraesCS6A01G122100 chr6B 87.500 104 3 5 8 111 151371611 151371704 1.820000e-20 111.0
15 TraesCS6A01G122100 chr6B 92.857 56 3 1 4144 4198 151375695 151375750 5.140000e-11 80.5
16 TraesCS6A01G122100 chr6D 88.274 2294 88 73 407 2617 78752061 78754256 0.000000e+00 2579.0
17 TraesCS6A01G122100 chr6D 91.329 1753 77 35 4429 6154 78756361 78758065 0.000000e+00 2326.0
18 TraesCS6A01G122100 chr6D 87.982 1348 92 29 2739 4043 78754364 78755684 0.000000e+00 1528.0
19 TraesCS6A01G122100 chr6D 87.931 348 36 5 1078 1422 402353271 402352927 7.470000e-109 405.0
20 TraesCS6A01G122100 chr6D 83.709 399 28 13 4046 4426 78755934 78756313 5.940000e-90 342.0
21 TraesCS6A01G122100 chr6D 88.152 211 22 2 1547 1757 402352399 402352192 1.330000e-61 248.0
22 TraesCS6A01G122100 chr6D 86.061 165 7 9 9 165 78751835 78751991 4.970000e-36 163.0
23 TraesCS6A01G122100 chr5A 92.547 322 22 2 1082 1402 410203610 410203290 1.570000e-125 460.0
24 TraesCS6A01G122100 chr5A 82.331 266 43 4 2068 2331 410202814 410202551 1.740000e-55 228.0
25 TraesCS6A01G122100 chr5D 91.798 317 24 2 1082 1397 315485498 315485183 2.050000e-119 440.0
26 TraesCS6A01G122100 chr5B 91.613 310 24 2 1094 1402 363669759 363669451 1.590000e-115 427.0
27 TraesCS6A01G122100 chr5B 81.203 266 46 4 2068 2331 363668968 363668705 1.750000e-50 211.0
28 TraesCS6A01G122100 chr5B 82.028 217 35 3 1548 1764 363669246 363669034 1.370000e-41 182.0
29 TraesCS6A01G122100 chr7D 85.268 224 31 2 1207 1429 159736615 159736837 4.830000e-56 230.0
30 TraesCS6A01G122100 chr7D 78.448 348 73 2 4798 5144 159738666 159739012 6.240000e-55 226.0
31 TraesCS6A01G122100 chr7D 85.646 209 27 2 1548 1756 159737274 159737479 3.760000e-52 217.0
32 TraesCS6A01G122100 chr7A 78.448 348 73 2 4798 5144 158397280 158397626 6.240000e-55 226.0
33 TraesCS6A01G122100 chr7A 85.646 209 27 2 1548 1756 158395916 158396121 3.760000e-52 217.0
34 TraesCS6A01G122100 chr7B 81.618 272 46 4 2071 2340 45641346 45641077 8.080000e-54 222.0
35 TraesCS6A01G122100 chr7B 82.129 263 43 4 2071 2331 45848789 45849049 8.080000e-54 222.0
36 TraesCS6A01G122100 chr7B 85.646 209 27 2 1548 1756 120587634 120587839 3.760000e-52 217.0
37 TraesCS6A01G122100 chr7B 77.874 348 75 2 4798 5144 120589021 120589367 1.350000e-51 215.0
38 TraesCS6A01G122100 chr2B 96.667 60 1 1 4467 4525 620849197 620849138 1.420000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G122100 chr6A 94225922 94232112 6190 False 2793.900000 10683 94.737000 1 6191 4 chr6A.!!$F1 6190
1 TraesCS6A01G122100 chr6A 94211762 94212395 633 True 555.000000 555 83.359000 5587 6188 1 chr6A.!!$R1 601
2 TraesCS6A01G122100 chr6A 549044434 549045515 1081 True 338.500000 427 88.612500 1078 1758 2 chr6A.!!$R2 680
3 TraesCS6A01G122100 chr6B 151371611 151377666 6055 False 1146.750000 2675 89.695667 8 6154 6 chr6B.!!$F1 6146
4 TraesCS6A01G122100 chr6B 603146677 603147873 1196 True 321.500000 399 87.636000 1078 1758 2 chr6B.!!$R2 680
5 TraesCS6A01G122100 chr6D 78751835 78758065 6230 False 1387.600000 2579 87.471000 9 6154 5 chr6D.!!$F1 6145
6 TraesCS6A01G122100 chr6D 402352192 402353271 1079 True 326.500000 405 88.041500 1078 1757 2 chr6D.!!$R1 679
7 TraesCS6A01G122100 chr5A 410202551 410203610 1059 True 344.000000 460 87.439000 1082 2331 2 chr5A.!!$R1 1249
8 TraesCS6A01G122100 chr5B 363668705 363669759 1054 True 273.333333 427 84.948000 1094 2331 3 chr5B.!!$R1 1237
9 TraesCS6A01G122100 chr7D 159736615 159739012 2397 False 224.333333 230 83.120667 1207 5144 3 chr7D.!!$F1 3937
10 TraesCS6A01G122100 chr7A 158395916 158397626 1710 False 221.500000 226 82.047000 1548 5144 2 chr7A.!!$F1 3596
11 TraesCS6A01G122100 chr7B 120587634 120589367 1733 False 216.000000 217 81.760000 1548 5144 2 chr7B.!!$F2 3596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
691 732 0.106335 CTACTCTACTCGGGAGCGGA 59.894 60.0 0.00 0.00 34.46 5.54 F
1886 2833 0.109723 TGTCAGCCCCCTTTACACAC 59.890 55.0 0.00 0.00 0.00 3.82 F
2339 3715 0.248843 GCCTCCAAGGTCAGTCTCAG 59.751 60.0 0.00 0.00 37.80 3.35 F
3443 4902 0.320771 ATGGACTGTTCACTGTCGCC 60.321 55.0 9.96 0.78 43.16 5.54 F
4068 5809 0.180171 AACGATGGATGCCATTCGGA 59.820 50.0 16.61 0.00 45.26 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 3741 0.096281 GACGCACAGAGAGAGACGAG 59.904 60.0 0.00 0.0 0.00 4.18 R
3020 4453 0.035598 TCGAAAGGCGTTTGGGATGA 59.964 50.0 9.48 0.0 41.80 2.92 R
3851 5328 0.038251 TGCAGCTACTGTCGGTTGAG 60.038 55.0 0.00 0.0 33.43 3.02 R
4341 6152 1.231963 ACCTTTGACCCCTTTGACCT 58.768 50.0 0.00 0.0 0.00 3.85 R
5461 7337 0.187606 AAACCTTTCCCGCCTTTCCT 59.812 50.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 117 2.664851 CGCGTGGACCAAGCAGAA 60.665 61.111 28.32 0.00 38.67 3.02
123 124 0.467290 GGACCAAGCAGAACAACCCA 60.467 55.000 0.00 0.00 0.00 4.51
167 176 2.800746 GCGCGCGCATGAGTTTTT 60.801 55.556 46.11 0.00 41.49 1.94
186 195 4.780275 TTTTGATGATGATTTGCGGACA 57.220 36.364 0.00 0.00 0.00 4.02
187 196 4.987408 TTTGATGATGATTTGCGGACAT 57.013 36.364 0.00 0.00 0.00 3.06
188 197 4.987408 TTGATGATGATTTGCGGACATT 57.013 36.364 0.00 0.00 0.00 2.71
463 487 2.203818 ATGCCAAGCCCCAAAGCA 60.204 55.556 0.00 0.00 37.94 3.91
484 516 1.074850 CTTCCTCCCTCCCTCCCTC 60.075 68.421 0.00 0.00 0.00 4.30
517 549 2.635443 CCACCAACCCAACATCGCC 61.635 63.158 0.00 0.00 0.00 5.54
522 554 1.748879 AACCCAACATCGCCATCCG 60.749 57.895 0.00 0.00 38.61 4.18
537 569 3.195661 CCATCCGTTCCTACTACTTTGC 58.804 50.000 0.00 0.00 0.00 3.68
570 602 4.118995 CGCGCCCGGCCGTATATA 62.119 66.667 26.12 0.00 38.94 0.86
571 603 2.262292 GCGCCCGGCCGTATATAA 59.738 61.111 26.12 0.00 34.80 0.98
572 604 1.374505 GCGCCCGGCCGTATATAAA 60.375 57.895 26.12 0.00 34.80 1.40
574 606 1.015607 CGCCCGGCCGTATATAAACC 61.016 60.000 26.12 0.00 0.00 3.27
575 607 0.674581 GCCCGGCCGTATATAAACCC 60.675 60.000 26.12 0.00 0.00 4.11
576 608 0.390209 CCCGGCCGTATATAAACCCG 60.390 60.000 26.12 3.25 35.74 5.28
577 609 0.318120 CCGGCCGTATATAAACCCGT 59.682 55.000 26.12 0.00 34.26 5.28
578 610 1.669795 CCGGCCGTATATAAACCCGTC 60.670 57.143 26.12 0.00 34.26 4.79
579 611 1.701704 GGCCGTATATAAACCCGTCG 58.298 55.000 0.00 0.00 0.00 5.12
580 612 1.269448 GGCCGTATATAAACCCGTCGA 59.731 52.381 0.00 0.00 0.00 4.20
581 613 2.094545 GGCCGTATATAAACCCGTCGAT 60.095 50.000 0.00 0.00 0.00 3.59
582 614 3.174375 GCCGTATATAAACCCGTCGATC 58.826 50.000 0.00 0.00 0.00 3.69
583 615 3.366273 GCCGTATATAAACCCGTCGATCA 60.366 47.826 0.00 0.00 0.00 2.92
587 619 5.220154 CGTATATAAACCCGTCGATCAATGC 60.220 44.000 0.00 0.00 0.00 3.56
619 651 0.115745 TTGTCGAGGAGGGTTAGGGT 59.884 55.000 0.00 0.00 0.00 4.34
689 730 2.522836 TACTACTCTACTCGGGAGCG 57.477 55.000 0.00 0.00 34.46 5.03
690 731 0.179051 ACTACTCTACTCGGGAGCGG 60.179 60.000 0.00 0.00 34.46 5.52
691 732 0.106335 CTACTCTACTCGGGAGCGGA 59.894 60.000 0.00 0.00 34.46 5.54
719 777 2.553172 ACTCCGTCGGTTATCTATCAGC 59.447 50.000 11.88 0.00 0.00 4.26
746 804 4.659088 GTTTCGAGCTTAAATTACCAGGC 58.341 43.478 0.00 0.00 0.00 4.85
760 818 1.761667 CAGGCAGGAGGAGGAGGAG 60.762 68.421 0.00 0.00 0.00 3.69
761 819 2.445654 GGCAGGAGGAGGAGGAGG 60.446 72.222 0.00 0.00 0.00 4.30
762 820 3.160748 GCAGGAGGAGGAGGAGGC 61.161 72.222 0.00 0.00 0.00 4.70
763 821 2.366167 CAGGAGGAGGAGGAGGCA 59.634 66.667 0.00 0.00 0.00 4.75
764 822 1.761667 CAGGAGGAGGAGGAGGCAG 60.762 68.421 0.00 0.00 0.00 4.85
765 823 1.938596 AGGAGGAGGAGGAGGCAGA 60.939 63.158 0.00 0.00 0.00 4.26
766 824 1.457455 GGAGGAGGAGGAGGCAGAG 60.457 68.421 0.00 0.00 0.00 3.35
767 825 2.042025 AGGAGGAGGAGGCAGAGC 60.042 66.667 0.00 0.00 0.00 4.09
898 987 2.956964 CGATCGAGCAAGGTCGGC 60.957 66.667 19.76 12.08 40.49 5.54
930 1019 1.338020 CGCCTGCTTTGGAGTTTCTTT 59.662 47.619 0.00 0.00 0.00 2.52
1438 1554 1.069823 AGGTCAGTCATCATCCATCGC 59.930 52.381 0.00 0.00 0.00 4.58
1441 1565 1.301244 AGTCATCATCCATCGCCGC 60.301 57.895 0.00 0.00 0.00 6.53
1774 2721 1.441738 TACGCTGTCACGTACTAGCA 58.558 50.000 14.73 0.00 46.19 3.49
1775 2722 0.109873 ACGCTGTCACGTACTAGCAC 60.110 55.000 14.73 0.00 46.19 4.40
1778 2725 1.335597 GCTGTCACGTACTAGCACACA 60.336 52.381 10.96 0.00 34.39 3.72
1874 2821 2.890945 TCCCTTTAAGCTTTTGTCAGCC 59.109 45.455 3.20 0.00 41.12 4.85
1885 2832 0.847373 TTGTCAGCCCCCTTTACACA 59.153 50.000 0.00 0.00 0.00 3.72
1886 2833 0.109723 TGTCAGCCCCCTTTACACAC 59.890 55.000 0.00 0.00 0.00 3.82
1928 2983 1.103803 GACACTCGATCCACTAGCCA 58.896 55.000 0.00 0.00 0.00 4.75
1933 2988 1.227380 CGATCCACTAGCCACAGCC 60.227 63.158 0.00 0.00 41.25 4.85
1969 3038 3.175240 CGAGCAGCTCAACGTCCG 61.175 66.667 22.49 3.02 0.00 4.79
2021 3100 8.518151 GGCTATACCGTAGTTCTTTTCTTATC 57.482 38.462 0.00 0.00 0.00 1.75
2335 3711 1.216710 CTCGCCTCCAAGGTCAGTC 59.783 63.158 0.00 0.00 37.80 3.51
2336 3712 1.228894 TCGCCTCCAAGGTCAGTCT 60.229 57.895 0.00 0.00 37.80 3.24
2337 3713 1.216710 CGCCTCCAAGGTCAGTCTC 59.783 63.158 0.00 0.00 37.80 3.36
2338 3714 1.536073 CGCCTCCAAGGTCAGTCTCA 61.536 60.000 0.00 0.00 37.80 3.27
2339 3715 0.248843 GCCTCCAAGGTCAGTCTCAG 59.751 60.000 0.00 0.00 37.80 3.35
2340 3716 1.638529 CCTCCAAGGTCAGTCTCAGT 58.361 55.000 0.00 0.00 0.00 3.41
2355 3731 2.826128 TCTCAGTACCACTCATCACCAC 59.174 50.000 0.00 0.00 0.00 4.16
2356 3732 2.828520 CTCAGTACCACTCATCACCACT 59.171 50.000 0.00 0.00 0.00 4.00
2358 3734 3.762288 TCAGTACCACTCATCACCACTAC 59.238 47.826 0.00 0.00 0.00 2.73
2359 3735 3.764434 CAGTACCACTCATCACCACTACT 59.236 47.826 0.00 0.00 0.00 2.57
2360 3736 3.764434 AGTACCACTCATCACCACTACTG 59.236 47.826 0.00 0.00 0.00 2.74
2362 3738 1.406069 CCACTCATCACCACTACTGCC 60.406 57.143 0.00 0.00 0.00 4.85
2363 3739 1.276138 CACTCATCACCACTACTGCCA 59.724 52.381 0.00 0.00 0.00 4.92
2364 3740 2.093288 CACTCATCACCACTACTGCCAT 60.093 50.000 0.00 0.00 0.00 4.40
2365 3741 2.169352 ACTCATCACCACTACTGCCATC 59.831 50.000 0.00 0.00 0.00 3.51
2366 3742 2.433604 CTCATCACCACTACTGCCATCT 59.566 50.000 0.00 0.00 0.00 2.90
2367 3743 2.432146 TCATCACCACTACTGCCATCTC 59.568 50.000 0.00 0.00 0.00 2.75
2370 3746 0.818296 ACCACTACTGCCATCTCGTC 59.182 55.000 0.00 0.00 0.00 4.20
2378 3754 1.334556 CTGCCATCTCGTCTCTCTCTG 59.665 57.143 0.00 0.00 0.00 3.35
2381 3757 1.065401 CCATCTCGTCTCTCTCTGTGC 59.935 57.143 0.00 0.00 0.00 4.57
2453 3829 2.076863 CAACCTAGCGACCTTTCCTTG 58.923 52.381 0.00 0.00 0.00 3.61
2512 3896 7.822161 TCAGAATGAATTCCTCACAAAAGAA 57.178 32.000 2.27 0.00 45.97 2.52
2514 3898 8.694540 TCAGAATGAATTCCTCACAAAAGAAAA 58.305 29.630 2.27 0.00 45.97 2.29
2515 3899 8.758715 CAGAATGAATTCCTCACAAAAGAAAAC 58.241 33.333 2.27 0.00 39.69 2.43
2517 3901 9.097257 GAATGAATTCCTCACAAAAGAAAACAA 57.903 29.630 2.27 0.00 36.69 2.83
2518 3902 9.617523 AATGAATTCCTCACAAAAGAAAACAAT 57.382 25.926 2.27 0.00 36.69 2.71
2519 3903 8.422973 TGAATTCCTCACAAAAGAAAACAATG 57.577 30.769 2.27 0.00 0.00 2.82
2520 3904 8.256605 TGAATTCCTCACAAAAGAAAACAATGA 58.743 29.630 2.27 0.00 0.00 2.57
2521 3905 9.264719 GAATTCCTCACAAAAGAAAACAATGAT 57.735 29.630 0.00 0.00 0.00 2.45
2522 3906 8.822652 ATTCCTCACAAAAGAAAACAATGATC 57.177 30.769 0.00 0.00 0.00 2.92
2523 3907 7.345422 TCCTCACAAAAGAAAACAATGATCA 57.655 32.000 0.00 0.00 0.00 2.92
2524 3908 7.428020 TCCTCACAAAAGAAAACAATGATCAG 58.572 34.615 0.09 0.00 0.00 2.90
2525 3909 7.285172 TCCTCACAAAAGAAAACAATGATCAGA 59.715 33.333 0.09 0.00 0.00 3.27
2526 3910 7.922278 CCTCACAAAAGAAAACAATGATCAGAA 59.078 33.333 0.09 0.00 0.00 3.02
2527 3911 9.472361 CTCACAAAAGAAAACAATGATCAGAAT 57.528 29.630 0.09 0.00 0.00 2.40
2528 3912 9.251792 TCACAAAAGAAAACAATGATCAGAATG 57.748 29.630 0.09 3.00 37.54 2.67
2565 3949 0.521242 CGATTGCGGCAGCTGTAAAC 60.521 55.000 16.64 5.56 45.42 2.01
2566 3950 0.521291 GATTGCGGCAGCTGTAAACA 59.479 50.000 16.64 6.18 45.42 2.83
2567 3951 0.958091 ATTGCGGCAGCTGTAAACAA 59.042 45.000 16.64 14.64 45.42 2.83
2568 3952 0.741326 TTGCGGCAGCTGTAAACAAA 59.259 45.000 16.64 0.21 45.42 2.83
2576 3960 5.393962 GGCAGCTGTAAACAAATTAGTCAG 58.606 41.667 16.64 0.00 0.00 3.51
2590 3974 2.656560 AGTCAGAGGCATACGTCAAC 57.343 50.000 0.00 0.00 33.01 3.18
2592 3976 2.563179 AGTCAGAGGCATACGTCAACTT 59.437 45.455 0.00 0.00 33.01 2.66
2594 3978 2.094182 TCAGAGGCATACGTCAACTTCC 60.094 50.000 0.00 0.00 33.01 3.46
2598 3982 2.829720 AGGCATACGTCAACTTCCACTA 59.170 45.455 0.00 0.00 0.00 2.74
2607 3994 7.224522 ACGTCAACTTCCACTATAGTTAGTT 57.775 36.000 1.56 10.21 36.50 2.24
2609 3996 6.468319 CGTCAACTTCCACTATAGTTAGTTCG 59.532 42.308 16.35 14.64 36.50 3.95
2626 4013 8.430828 AGTTAGTTCGAATTTTAGTTAGTTCGC 58.569 33.333 0.00 0.00 42.14 4.70
2627 4014 5.840250 AGTTCGAATTTTAGTTAGTTCGCG 58.160 37.500 0.00 0.00 42.14 5.87
2628 4015 5.630680 AGTTCGAATTTTAGTTAGTTCGCGA 59.369 36.000 3.71 3.71 42.14 5.87
2629 4016 6.309737 AGTTCGAATTTTAGTTAGTTCGCGAT 59.690 34.615 10.88 0.00 42.14 4.58
2630 4017 6.636666 TCGAATTTTAGTTAGTTCGCGATT 57.363 33.333 10.88 3.94 42.14 3.34
2632 4019 7.512297 TCGAATTTTAGTTAGTTCGCGATTTT 58.488 30.769 10.88 0.55 42.14 1.82
2633 4020 8.011106 TCGAATTTTAGTTAGTTCGCGATTTTT 58.989 29.630 10.88 0.00 42.14 1.94
2664 4067 5.923733 ATTCACTAGTAGTTAGCAGTGCT 57.076 39.130 23.44 23.44 43.41 4.40
2665 4068 4.703645 TCACTAGTAGTTAGCAGTGCTG 57.296 45.455 27.97 10.49 40.10 4.41
2670 4073 3.432378 AGTAGTTAGCAGTGCTGGTAGT 58.568 45.455 27.97 16.54 43.34 2.73
2671 4074 3.833070 AGTAGTTAGCAGTGCTGGTAGTT 59.167 43.478 27.97 9.36 43.34 2.24
2673 4076 5.657302 AGTAGTTAGCAGTGCTGGTAGTTAT 59.343 40.000 27.97 7.18 43.34 1.89
2674 4077 5.422214 AGTTAGCAGTGCTGGTAGTTATT 57.578 39.130 27.97 0.00 43.34 1.40
2677 4080 7.391620 AGTTAGCAGTGCTGGTAGTTATTTAA 58.608 34.615 27.97 6.17 43.34 1.52
2680 4083 7.787725 AGCAGTGCTGGTAGTTATTTAATAC 57.212 36.000 18.98 0.00 39.83 1.89
2682 4085 8.701895 AGCAGTGCTGGTAGTTATTTAATACTA 58.298 33.333 18.98 0.00 39.83 1.82
2683 4086 8.762426 GCAGTGCTGGTAGTTATTTAATACTAC 58.238 37.037 8.18 11.65 43.74 2.73
2684 4087 8.965172 CAGTGCTGGTAGTTATTTAATACTACG 58.035 37.037 12.87 0.00 44.82 3.51
2687 4115 9.950680 TGCTGGTAGTTATTTAATACTACGTAC 57.049 33.333 12.87 0.00 44.82 3.67
2710 4138 1.342374 GGGGATTGCCATATGGGATCC 60.342 57.143 23.30 23.88 40.01 3.36
2713 4141 3.028850 GGATTGCCATATGGGATCCATG 58.971 50.000 25.87 8.81 44.84 3.66
2714 4142 1.927487 TTGCCATATGGGATCCATGC 58.073 50.000 23.30 6.63 44.84 4.06
2718 4146 1.559219 CCATATGGGATCCATGCGGTA 59.441 52.381 14.52 0.00 44.84 4.02
2725 4153 3.157087 GGGATCCATGCGGTAAATTGAT 58.843 45.455 15.23 0.00 0.00 2.57
2726 4154 3.191371 GGGATCCATGCGGTAAATTGATC 59.809 47.826 15.23 0.00 0.00 2.92
2728 4156 2.582052 TCCATGCGGTAAATTGATCCC 58.418 47.619 0.00 0.00 0.00 3.85
2729 4157 2.092158 TCCATGCGGTAAATTGATCCCA 60.092 45.455 0.00 0.00 0.00 4.37
2730 4158 2.892852 CCATGCGGTAAATTGATCCCAT 59.107 45.455 0.00 0.00 0.00 4.00
2731 4159 4.078537 CCATGCGGTAAATTGATCCCATA 58.921 43.478 0.00 0.00 0.00 2.74
2732 4160 4.706476 CCATGCGGTAAATTGATCCCATAT 59.294 41.667 0.00 0.00 0.00 1.78
2733 4161 5.885352 CCATGCGGTAAATTGATCCCATATA 59.115 40.000 0.00 0.00 0.00 0.86
2735 4163 6.121776 TGCGGTAAATTGATCCCATATACT 57.878 37.500 0.00 0.00 0.00 2.12
2736 4164 7.247456 TGCGGTAAATTGATCCCATATACTA 57.753 36.000 0.00 0.00 0.00 1.82
2737 4165 7.327975 TGCGGTAAATTGATCCCATATACTAG 58.672 38.462 0.00 0.00 0.00 2.57
2738 4166 7.038587 TGCGGTAAATTGATCCCATATACTAGT 60.039 37.037 0.00 0.00 0.00 2.57
2739 4167 8.472413 GCGGTAAATTGATCCCATATACTAGTA 58.528 37.037 4.77 4.77 0.00 1.82
2747 4175 9.822727 TTGATCCCATATACTAGTAATGACAGA 57.177 33.333 18.71 14.34 0.00 3.41
2748 4176 9.997172 TGATCCCATATACTAGTAATGACAGAT 57.003 33.333 18.71 16.74 0.00 2.90
2793 4221 3.074675 TGTGCCACCGGTTTTGTATAT 57.925 42.857 2.97 0.00 0.00 0.86
2794 4222 4.217836 TGTGCCACCGGTTTTGTATATA 57.782 40.909 2.97 0.00 0.00 0.86
2795 4223 4.783055 TGTGCCACCGGTTTTGTATATAT 58.217 39.130 2.97 0.00 0.00 0.86
2796 4224 4.817464 TGTGCCACCGGTTTTGTATATATC 59.183 41.667 2.97 0.00 0.00 1.63
2797 4225 4.059511 TGCCACCGGTTTTGTATATATCG 58.940 43.478 2.97 0.00 0.00 2.92
2885 4318 2.834968 GCAAGCATGGCTACCCCC 60.835 66.667 0.00 0.00 38.25 5.40
2914 4347 2.092375 ACCTTACCTAGCATGCTTTCCC 60.092 50.000 28.02 0.00 0.00 3.97
2975 4408 3.861797 CAACTCCGCCCGCCCTAT 61.862 66.667 0.00 0.00 0.00 2.57
2976 4409 3.861797 AACTCCGCCCGCCCTATG 61.862 66.667 0.00 0.00 0.00 2.23
2984 4417 1.294780 CCCGCCCTATGCATCTCTC 59.705 63.158 0.19 0.00 41.33 3.20
2990 4423 3.702792 GCCCTATGCATCTCTCCTACTA 58.297 50.000 0.19 0.00 40.77 1.82
2991 4424 4.090090 GCCCTATGCATCTCTCCTACTAA 58.910 47.826 0.19 0.00 40.77 2.24
3062 4495 9.805966 TCGAATTTCGATAATACATATTGCAAC 57.194 29.630 17.08 0.00 44.82 4.17
3063 4496 8.766753 CGAATTTCGATAATACATATTGCAACG 58.233 33.333 13.45 0.00 43.74 4.10
3064 4497 9.594038 GAATTTCGATAATACATATTGCAACGT 57.406 29.630 0.00 1.86 0.00 3.99
3066 4499 7.701809 TTCGATAATACATATTGCAACGTGA 57.298 32.000 17.10 4.43 0.00 4.35
3067 4500 7.100829 TCGATAATACATATTGCAACGTGAC 57.899 36.000 17.10 0.00 0.00 3.67
3251 4702 9.516314 GAGATGCCCAAATTTGTTTTATACTAC 57.484 33.333 16.73 0.00 0.00 2.73
3291 4744 5.278957 GCCATGAGACTAGGAGAGATCTTTC 60.279 48.000 4.66 4.66 0.00 2.62
3312 4766 3.728373 CTACCCCACCCCACCTGC 61.728 72.222 0.00 0.00 0.00 4.85
3325 4779 3.741476 CCTGCGCCTTTGTCCTGC 61.741 66.667 4.18 0.00 0.00 4.85
3368 4826 1.457346 CTTTCACATGTGCTCCTCCC 58.543 55.000 21.38 0.00 0.00 4.30
3435 4894 4.394729 GTTTCCTAACCATGGACTGTTCA 58.605 43.478 21.47 0.00 32.65 3.18
3436 4895 3.695830 TCCTAACCATGGACTGTTCAC 57.304 47.619 21.47 0.00 0.00 3.18
3437 4896 3.248024 TCCTAACCATGGACTGTTCACT 58.752 45.455 21.47 0.00 0.00 3.41
3438 4897 3.007940 TCCTAACCATGGACTGTTCACTG 59.992 47.826 21.47 0.00 0.00 3.66
3439 4898 3.244561 CCTAACCATGGACTGTTCACTGT 60.245 47.826 21.47 0.00 0.00 3.55
3440 4899 2.550830 ACCATGGACTGTTCACTGTC 57.449 50.000 21.47 8.14 42.02 3.51
3442 4901 0.792640 CATGGACTGTTCACTGTCGC 59.207 55.000 9.96 5.23 43.16 5.19
3443 4902 0.320771 ATGGACTGTTCACTGTCGCC 60.321 55.000 9.96 0.78 43.16 5.54
3444 4903 2.022129 GGACTGTTCACTGTCGCCG 61.022 63.158 9.96 0.00 43.16 6.46
3445 4904 1.007734 GACTGTTCACTGTCGCCGA 60.008 57.895 1.70 0.00 35.63 5.54
3446 4905 0.388649 GACTGTTCACTGTCGCCGAT 60.389 55.000 0.00 0.00 35.63 4.18
3448 4907 0.388520 CTGTTCACTGTCGCCGATCA 60.389 55.000 0.00 0.00 0.00 2.92
3449 4908 0.666274 TGTTCACTGTCGCCGATCAC 60.666 55.000 0.00 0.00 0.00 3.06
3450 4909 0.666274 GTTCACTGTCGCCGATCACA 60.666 55.000 0.00 0.00 0.00 3.58
3459 4932 0.596083 CGCCGATCACATGAGGTCTC 60.596 60.000 0.00 0.00 0.00 3.36
3513 4986 0.884704 TTGACCGCACCTTCTGCTTC 60.885 55.000 0.00 0.00 44.64 3.86
3576 5049 1.153289 CCATGAGGGTGAAGGCTCG 60.153 63.158 0.00 0.00 0.00 5.03
3579 5052 1.617947 ATGAGGGTGAAGGCTCGTCC 61.618 60.000 0.00 0.00 0.00 4.79
3633 5106 3.004106 GCTGTTTTTGTCTCTGTCATGCT 59.996 43.478 0.00 0.00 0.00 3.79
3733 5209 4.570874 GGAATGGAGGGGCCGAGC 62.571 72.222 0.00 0.00 40.66 5.03
3746 5222 1.878522 CCGAGCGGTCATTTCCTCG 60.879 63.158 15.89 6.63 44.81 4.63
3806 5282 4.155709 TGTGTATGGGCTTTTCAATTGGA 58.844 39.130 5.42 0.00 0.00 3.53
3843 5319 2.028294 AGAGTGGAAGCACATGAGACAG 60.028 50.000 0.00 0.00 0.00 3.51
3847 5324 3.565482 GTGGAAGCACATGAGACAGAAAA 59.435 43.478 0.00 0.00 0.00 2.29
3851 5328 6.072508 TGGAAGCACATGAGACAGAAAAATAC 60.073 38.462 0.00 0.00 0.00 1.89
3866 5343 5.638234 AGAAAAATACTCAACCGACAGTAGC 59.362 40.000 0.00 0.00 0.00 3.58
3871 5348 0.319555 TCAACCGACAGTAGCTGCAC 60.320 55.000 4.12 0.00 34.37 4.57
3979 5471 0.318107 GATCATGCGGCCCATTTTCG 60.318 55.000 0.00 0.00 29.71 3.46
4006 5498 0.838608 TCGGCCGGGTTGGTTTATAT 59.161 50.000 27.83 0.00 41.21 0.86
4007 5499 2.045524 TCGGCCGGGTTGGTTTATATA 58.954 47.619 27.83 0.00 41.21 0.86
4035 5527 0.877071 AATTCTGCACGGCACTGAAG 59.123 50.000 0.00 0.00 33.79 3.02
4039 5531 1.001974 TCTGCACGGCACTGAAGTTAT 59.998 47.619 0.00 0.00 33.79 1.89
4045 5537 1.393539 CGGCACTGAAGTTATGTTCCG 59.606 52.381 4.92 4.92 0.00 4.30
4046 5538 2.423577 GGCACTGAAGTTATGTTCCGT 58.576 47.619 0.00 0.00 0.00 4.69
4047 5539 2.159627 GGCACTGAAGTTATGTTCCGTG 59.840 50.000 4.38 4.38 41.83 4.94
4068 5809 0.180171 AACGATGGATGCCATTCGGA 59.820 50.000 16.61 0.00 45.26 4.55
4087 5828 0.603707 ACATGGCGTCTGTCAGTTGG 60.604 55.000 0.00 0.00 29.87 3.77
4112 5884 5.409520 TGTCAAAGATTCTGCACTCACATAC 59.590 40.000 0.00 0.00 0.00 2.39
4114 5886 5.640783 TCAAAGATTCTGCACTCACATACAG 59.359 40.000 0.00 0.00 0.00 2.74
4126 5899 6.627287 GCACTCACATACAGTATACCAGACAA 60.627 42.308 0.00 0.00 0.00 3.18
4182 5956 4.459337 AGTCAACCCTGCTATTAAGTTTGC 59.541 41.667 0.00 0.00 0.00 3.68
4183 5957 4.217550 GTCAACCCTGCTATTAAGTTTGCA 59.782 41.667 0.00 0.00 0.00 4.08
4184 5958 5.016173 TCAACCCTGCTATTAAGTTTGCAT 58.984 37.500 0.00 0.00 34.79 3.96
4185 5959 4.989279 ACCCTGCTATTAAGTTTGCATG 57.011 40.909 0.00 0.00 34.79 4.06
4245 6023 5.499139 TGCTATTAAGTTTGGCACATAGC 57.501 39.130 0.00 0.00 39.30 2.97
4295 6085 1.901159 CATGCAGCCTCTAGAGCCTAT 59.099 52.381 14.73 0.00 0.00 2.57
4303 6093 4.045334 AGCCTCTAGAGCCTATAGGTCAAT 59.955 45.833 20.10 6.87 45.87 2.57
4341 6152 6.418946 AGGGTCAAAGGTTTTATTTGCAAAA 58.581 32.000 17.19 2.96 37.52 2.44
4342 6153 6.542005 AGGGTCAAAGGTTTTATTTGCAAAAG 59.458 34.615 17.19 0.00 37.52 2.27
4343 6154 6.238621 GGGTCAAAGGTTTTATTTGCAAAAGG 60.239 38.462 17.19 0.00 37.52 3.11
4344 6155 6.317642 GGTCAAAGGTTTTATTTGCAAAAGGT 59.682 34.615 17.19 2.12 37.52 3.50
4345 6156 7.406553 GTCAAAGGTTTTATTTGCAAAAGGTC 58.593 34.615 17.19 6.14 37.52 3.85
4346 6157 7.065204 GTCAAAGGTTTTATTTGCAAAAGGTCA 59.935 33.333 17.19 0.00 37.52 4.02
4347 6158 7.607991 TCAAAGGTTTTATTTGCAAAAGGTCAA 59.392 29.630 17.19 2.50 37.52 3.18
4348 6159 7.929941 AAGGTTTTATTTGCAAAAGGTCAAA 57.070 28.000 17.19 8.69 36.72 2.69
4349 6160 7.552458 AGGTTTTATTTGCAAAAGGTCAAAG 57.448 32.000 17.19 0.00 35.89 2.77
4350 6161 6.542005 AGGTTTTATTTGCAAAAGGTCAAAGG 59.458 34.615 17.19 0.00 35.89 3.11
4351 6162 6.238621 GGTTTTATTTGCAAAAGGTCAAAGGG 60.239 38.462 17.19 0.00 35.89 3.95
4352 6163 2.998316 TTTGCAAAAGGTCAAAGGGG 57.002 45.000 10.02 0.00 0.00 4.79
4353 6164 1.872773 TTGCAAAAGGTCAAAGGGGT 58.127 45.000 0.00 0.00 0.00 4.95
4354 6165 1.408969 TGCAAAAGGTCAAAGGGGTC 58.591 50.000 0.00 0.00 0.00 4.46
4355 6166 1.342474 TGCAAAAGGTCAAAGGGGTCA 60.342 47.619 0.00 0.00 0.00 4.02
4356 6167 1.760029 GCAAAAGGTCAAAGGGGTCAA 59.240 47.619 0.00 0.00 0.00 3.18
4357 6168 2.169561 GCAAAAGGTCAAAGGGGTCAAA 59.830 45.455 0.00 0.00 0.00 2.69
4358 6169 3.741075 GCAAAAGGTCAAAGGGGTCAAAG 60.741 47.826 0.00 0.00 0.00 2.77
4359 6170 2.381752 AAGGTCAAAGGGGTCAAAGG 57.618 50.000 0.00 0.00 0.00 3.11
4360 6171 1.231963 AGGTCAAAGGGGTCAAAGGT 58.768 50.000 0.00 0.00 0.00 3.50
4361 6172 1.573857 AGGTCAAAGGGGTCAAAGGTT 59.426 47.619 0.00 0.00 0.00 3.50
4362 6173 2.023404 AGGTCAAAGGGGTCAAAGGTTT 60.023 45.455 0.00 0.00 0.00 3.27
4363 6174 2.769663 GGTCAAAGGGGTCAAAGGTTTT 59.230 45.455 0.00 0.00 0.00 2.43
4364 6175 3.962063 GGTCAAAGGGGTCAAAGGTTTTA 59.038 43.478 0.00 0.00 0.00 1.52
4365 6176 4.591498 GGTCAAAGGGGTCAAAGGTTTTAT 59.409 41.667 0.00 0.00 0.00 1.40
4366 6177 5.071250 GGTCAAAGGGGTCAAAGGTTTTATT 59.929 40.000 0.00 0.00 0.00 1.40
4367 6178 6.408776 GGTCAAAGGGGTCAAAGGTTTTATTT 60.409 38.462 0.00 0.00 0.00 1.40
4368 6179 7.202020 GGTCAAAGGGGTCAAAGGTTTTATTTA 60.202 37.037 0.00 0.00 0.00 1.40
4369 6180 7.654520 GTCAAAGGGGTCAAAGGTTTTATTTAC 59.345 37.037 0.00 0.00 0.00 2.01
4370 6181 7.344871 TCAAAGGGGTCAAAGGTTTTATTTACA 59.655 33.333 0.00 0.00 0.00 2.41
4371 6182 7.678207 AAGGGGTCAAAGGTTTTATTTACAA 57.322 32.000 0.00 0.00 0.00 2.41
4372 6183 7.678207 AGGGGTCAAAGGTTTTATTTACAAA 57.322 32.000 0.00 0.00 0.00 2.83
4392 6203 9.968870 TTACAAATTAGCCGTCAATTAAAAACT 57.031 25.926 0.00 0.00 0.00 2.66
4419 6234 3.028850 AGCCATGCATCAGCTGTTTAAT 58.971 40.909 17.81 0.00 42.74 1.40
4421 6236 4.646040 AGCCATGCATCAGCTGTTTAATTA 59.354 37.500 17.81 0.00 42.74 1.40
4426 6241 9.002600 CCATGCATCAGCTGTTTAATTAGTATA 57.997 33.333 14.67 0.00 42.74 1.47
4446 6306 8.986477 AGTATAATTTGTGTTTTGATCCTTGC 57.014 30.769 0.00 0.00 0.00 4.01
4447 6307 8.584157 AGTATAATTTGTGTTTTGATCCTTGCA 58.416 29.630 0.00 0.00 0.00 4.08
4462 6322 8.125978 TGATCCTTGCAATTAACATTTCTCTT 57.874 30.769 0.00 0.00 0.00 2.85
4463 6323 8.246180 TGATCCTTGCAATTAACATTTCTCTTC 58.754 33.333 0.00 0.00 0.00 2.87
4475 6337 0.617535 TTCTCTTCCTGGGCCATCGA 60.618 55.000 6.72 2.39 0.00 3.59
5199 7061 2.035442 GGACCTGTGAAGAAGCGGC 61.035 63.158 0.00 0.00 0.00 6.53
5200 7062 1.004440 GACCTGTGAAGAAGCGGCT 60.004 57.895 0.00 0.00 0.00 5.52
5201 7063 1.004440 ACCTGTGAAGAAGCGGCTC 60.004 57.895 1.45 0.00 0.00 4.70
5254 7116 8.903820 AGCTGTAGGAATGTTAATTGAATAACC 58.096 33.333 0.00 0.00 35.38 2.85
5282 7146 8.960591 AGAAAAATGTGAGAAAAGAAAGAGTGA 58.039 29.630 0.00 0.00 0.00 3.41
5283 7147 9.573133 GAAAAATGTGAGAAAAGAAAGAGTGAA 57.427 29.630 0.00 0.00 0.00 3.18
5284 7148 9.578439 AAAAATGTGAGAAAAGAAAGAGTGAAG 57.422 29.630 0.00 0.00 0.00 3.02
5288 7152 8.335532 TGTGAGAAAAGAAAGAGTGAAGAAAA 57.664 30.769 0.00 0.00 0.00 2.29
5290 7154 7.912773 GTGAGAAAAGAAAGAGTGAAGAAAAGG 59.087 37.037 0.00 0.00 0.00 3.11
5291 7155 6.800543 AGAAAAGAAAGAGTGAAGAAAAGGC 58.199 36.000 0.00 0.00 0.00 4.35
5292 7156 4.820284 AAGAAAGAGTGAAGAAAAGGCG 57.180 40.909 0.00 0.00 0.00 5.52
5293 7157 4.073293 AGAAAGAGTGAAGAAAAGGCGA 57.927 40.909 0.00 0.00 0.00 5.54
5297 7165 5.774498 AAGAGTGAAGAAAAGGCGATTTT 57.226 34.783 0.00 0.00 43.88 1.82
5461 7337 2.689658 TGAGTTGACCAAGAGGGAAGA 58.310 47.619 0.00 0.00 41.15 2.87
5462 7338 2.634940 TGAGTTGACCAAGAGGGAAGAG 59.365 50.000 0.00 0.00 41.15 2.85
5463 7339 1.981495 AGTTGACCAAGAGGGAAGAGG 59.019 52.381 0.00 0.00 41.15 3.69
5464 7340 1.978580 GTTGACCAAGAGGGAAGAGGA 59.021 52.381 0.00 0.00 41.15 3.71
5465 7341 2.372172 GTTGACCAAGAGGGAAGAGGAA 59.628 50.000 0.00 0.00 41.15 3.36
5466 7342 2.701551 TGACCAAGAGGGAAGAGGAAA 58.298 47.619 0.00 0.00 41.15 3.13
5467 7343 2.639839 TGACCAAGAGGGAAGAGGAAAG 59.360 50.000 0.00 0.00 41.15 2.62
5517 7393 1.551019 GGCCCCGTAGTCCAGTTTCT 61.551 60.000 0.00 0.00 0.00 2.52
5523 7399 1.467713 CGTAGTCCAGTTTCTCTCCGC 60.468 57.143 0.00 0.00 0.00 5.54
5525 7401 1.179814 AGTCCAGTTTCTCTCCGCGT 61.180 55.000 4.92 0.00 0.00 6.01
5527 7403 1.446272 CCAGTTTCTCTCCGCGTCC 60.446 63.158 4.92 0.00 0.00 4.79
5530 7406 2.602267 TTTCTCTCCGCGTCCCCA 60.602 61.111 4.92 0.00 0.00 4.96
5547 7430 1.618345 CCCACGAAATTTCCATCCCCA 60.618 52.381 12.54 0.00 0.00 4.96
5877 7799 2.178521 CCGACAAGGACGACTCCG 59.821 66.667 0.00 0.00 45.00 4.63
5903 7825 3.390183 TTCGCTCGCTGCCATCCAT 62.390 57.895 0.00 0.00 38.78 3.41
5904 7826 3.344215 CGCTCGCTGCCATCCATC 61.344 66.667 0.00 0.00 38.78 3.51
5914 7836 1.745890 CCATCCATCGGCCGAGTAA 59.254 57.895 33.87 20.37 0.00 2.24
5915 7837 0.105964 CCATCCATCGGCCGAGTAAA 59.894 55.000 33.87 18.50 0.00 2.01
5931 7855 1.068816 GTAAATTGTGCGGTGGTGTCC 60.069 52.381 0.00 0.00 0.00 4.02
5935 7859 2.050836 TTGTGCGGTGGTGTCCTGAT 62.051 55.000 0.00 0.00 0.00 2.90
5962 7886 4.745751 CCCGCGGGCTCGTACAAA 62.746 66.667 34.96 0.00 38.89 2.83
6098 8041 2.514824 GCGGGGCTCCATCTGAAC 60.515 66.667 1.96 0.00 0.00 3.18
6101 8044 1.529309 GGGGCTCCATCTGAACCTC 59.471 63.158 0.00 0.00 29.44 3.85
6107 8050 0.620556 TCCATCTGAACCTCTTGGCC 59.379 55.000 0.00 0.00 36.63 5.36
6108 8051 0.394899 CCATCTGAACCTCTTGGCCC 60.395 60.000 0.00 0.00 36.63 5.80
6135 8079 5.726980 TGAAATCTGGTGAAAAATCAGGG 57.273 39.130 0.00 0.00 0.00 4.45
6150 8101 0.674895 CAGGGCCTCACTGCAGTAAC 60.675 60.000 21.20 8.97 0.00 2.50
6168 8119 2.660189 ACTGCAGTAATGCCAATTGC 57.340 45.000 20.16 0.00 41.77 3.56
6180 8131 9.369904 AGTAATGCCAATTGCTAAAATTGTTAG 57.630 29.630 0.00 0.00 37.01 2.34
6188 8139 5.235305 TGCTAAAATTGTTAGCTAGCAGC 57.765 39.130 18.83 13.02 45.57 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 0.179258 GCGAGTTGCCTTCGTTTACG 60.179 55.000 0.00 0.00 40.08 3.18
131 132 0.179258 CGCGAGTTGCCTTCGTTTAC 60.179 55.000 0.00 0.00 42.08 2.01
132 133 1.893168 GCGCGAGTTGCCTTCGTTTA 61.893 55.000 12.10 0.00 42.08 2.01
165 174 4.780275 TGTCCGCAAATCATCATCAAAA 57.220 36.364 0.00 0.00 0.00 2.44
166 175 4.987408 ATGTCCGCAAATCATCATCAAA 57.013 36.364 0.00 0.00 0.00 2.69
167 176 4.987408 AATGTCCGCAAATCATCATCAA 57.013 36.364 0.00 0.00 0.00 2.57
463 487 0.029577 GGGAGGGAGGGAGGAAGAAT 60.030 60.000 0.00 0.00 0.00 2.40
484 516 0.954452 GGTGGGCTGTGTTGAAAGAG 59.046 55.000 0.00 0.00 0.00 2.85
517 549 3.857052 TGCAAAGTAGTAGGAACGGATG 58.143 45.455 0.00 0.00 0.00 3.51
522 554 5.175856 CGCAGATATGCAAAGTAGTAGGAAC 59.824 44.000 13.57 0.00 34.41 3.62
553 585 3.629883 TTATATACGGCCGGGCGCG 62.630 63.158 45.47 24.95 38.94 6.86
554 586 1.374505 TTTATATACGGCCGGGCGC 60.375 57.895 45.47 12.50 0.00 6.53
555 587 1.015607 GGTTTATATACGGCCGGGCG 61.016 60.000 44.20 44.20 0.00 6.13
556 588 0.674581 GGGTTTATATACGGCCGGGC 60.675 60.000 31.76 20.04 0.00 6.13
557 589 0.390209 CGGGTTTATATACGGCCGGG 60.390 60.000 31.76 2.28 0.00 5.73
558 590 0.318120 ACGGGTTTATATACGGCCGG 59.682 55.000 31.76 11.88 30.24 6.13
559 591 1.701704 GACGGGTTTATATACGGCCG 58.298 55.000 26.86 26.86 0.00 6.13
560 592 1.269448 TCGACGGGTTTATATACGGCC 59.731 52.381 0.00 0.00 0.00 6.13
561 593 2.704725 TCGACGGGTTTATATACGGC 57.295 50.000 0.00 0.00 0.00 5.68
562 594 4.424061 TGATCGACGGGTTTATATACGG 57.576 45.455 0.00 0.00 0.00 4.02
564 596 5.636121 TGCATTGATCGACGGGTTTATATAC 59.364 40.000 0.00 0.00 0.00 1.47
565 597 5.636121 GTGCATTGATCGACGGGTTTATATA 59.364 40.000 0.00 0.00 0.00 0.86
566 598 4.451096 GTGCATTGATCGACGGGTTTATAT 59.549 41.667 0.00 0.00 0.00 0.86
567 599 3.805422 GTGCATTGATCGACGGGTTTATA 59.195 43.478 0.00 0.00 0.00 0.98
568 600 2.612212 GTGCATTGATCGACGGGTTTAT 59.388 45.455 0.00 0.00 0.00 1.40
569 601 2.004017 GTGCATTGATCGACGGGTTTA 58.996 47.619 0.00 0.00 0.00 2.01
570 602 0.802494 GTGCATTGATCGACGGGTTT 59.198 50.000 0.00 0.00 0.00 3.27
571 603 0.321210 TGTGCATTGATCGACGGGTT 60.321 50.000 0.00 0.00 0.00 4.11
572 604 0.740868 CTGTGCATTGATCGACGGGT 60.741 55.000 0.00 0.00 0.00 5.28
574 606 1.349627 GCTGTGCATTGATCGACGG 59.650 57.895 0.00 0.00 0.00 4.79
575 607 1.012998 CGCTGTGCATTGATCGACG 60.013 57.895 0.00 0.00 0.00 5.12
576 608 0.721154 TTCGCTGTGCATTGATCGAC 59.279 50.000 0.00 0.00 0.00 4.20
577 609 1.001624 CTTCGCTGTGCATTGATCGA 58.998 50.000 0.00 0.00 0.00 3.59
578 610 1.001624 TCTTCGCTGTGCATTGATCG 58.998 50.000 0.00 0.00 0.00 3.69
579 611 5.145059 CAATATCTTCGCTGTGCATTGATC 58.855 41.667 0.00 0.00 0.00 2.92
580 612 4.577693 ACAATATCTTCGCTGTGCATTGAT 59.422 37.500 0.00 0.00 0.00 2.57
581 613 3.940852 ACAATATCTTCGCTGTGCATTGA 59.059 39.130 0.00 0.00 0.00 2.57
582 614 4.277258 GACAATATCTTCGCTGTGCATTG 58.723 43.478 0.00 0.00 0.00 2.82
583 615 3.001634 CGACAATATCTTCGCTGTGCATT 59.998 43.478 0.00 0.00 0.00 3.56
587 619 2.791560 CCTCGACAATATCTTCGCTGTG 59.208 50.000 1.86 0.00 35.15 3.66
719 777 5.121142 TGGTAATTTAAGCTCGAAACGGAAG 59.879 40.000 0.00 0.00 0.00 3.46
746 804 1.761667 CTGCCTCCTCCTCCTCCTG 60.762 68.421 0.00 0.00 0.00 3.86
762 820 3.883744 AAGTGAACCCGCGGCTCTG 62.884 63.158 22.85 8.91 0.00 3.35
763 821 2.676163 AAAAGTGAACCCGCGGCTCT 62.676 55.000 22.85 9.95 0.00 4.09
764 822 2.183858 GAAAAGTGAACCCGCGGCTC 62.184 60.000 22.85 18.88 0.00 4.70
765 823 2.203294 AAAAGTGAACCCGCGGCT 60.203 55.556 22.85 9.05 0.00 5.52
766 824 2.254350 GAAAAGTGAACCCGCGGC 59.746 61.111 22.85 7.02 0.00 6.53
767 825 2.554272 CGAAAAGTGAACCCGCGG 59.446 61.111 21.04 21.04 0.00 6.46
768 826 1.897398 CTCCGAAAAGTGAACCCGCG 61.897 60.000 0.00 0.00 0.00 6.46
769 827 1.574702 CCTCCGAAAAGTGAACCCGC 61.575 60.000 0.00 0.00 0.00 6.13
770 828 1.574702 GCCTCCGAAAAGTGAACCCG 61.575 60.000 0.00 0.00 0.00 5.28
771 829 1.574702 CGCCTCCGAAAAGTGAACCC 61.575 60.000 0.00 0.00 36.29 4.11
913 1002 2.030805 CCCGAAAGAAACTCCAAAGCAG 60.031 50.000 0.00 0.00 0.00 4.24
916 1005 1.886542 CCCCCGAAAGAAACTCCAAAG 59.113 52.381 0.00 0.00 0.00 2.77
1046 1136 2.815211 CCATCACCAGCGACACCG 60.815 66.667 0.00 0.00 39.16 4.94
1772 2719 3.961477 TGTGTGACAAGTAATGTGTGC 57.039 42.857 0.00 0.00 44.12 4.57
1773 2720 7.754069 AATTTTGTGTGACAAGTAATGTGTG 57.246 32.000 0.00 0.00 44.12 3.82
1874 2821 3.188460 CGTGAATTCTGTGTGTAAAGGGG 59.812 47.826 7.05 0.00 0.00 4.79
1906 2853 1.532090 GCTAGTGGATCGAGTGTCGTG 60.532 57.143 0.00 0.00 41.35 4.35
1928 2983 3.379445 CGTACCAGACCCGGCTGT 61.379 66.667 8.10 0.00 34.06 4.40
1933 2988 1.211969 CTGTCACGTACCAGACCCG 59.788 63.158 7.67 0.00 33.89 5.28
1974 3043 2.053116 CGTCAAGCGTGTGTGTGC 60.053 61.111 0.00 0.00 35.54 4.57
2010 3089 7.633621 ACGACGACATATACGATAAGAAAAGA 58.366 34.615 0.00 0.00 34.70 2.52
2011 3090 7.833284 ACGACGACATATACGATAAGAAAAG 57.167 36.000 0.00 0.00 34.70 2.27
2335 3711 2.828520 AGTGGTGATGAGTGGTACTGAG 59.171 50.000 0.00 0.00 0.00 3.35
2336 3712 2.889512 AGTGGTGATGAGTGGTACTGA 58.110 47.619 0.00 0.00 0.00 3.41
2337 3713 3.764434 AGTAGTGGTGATGAGTGGTACTG 59.236 47.826 0.00 0.00 0.00 2.74
2338 3714 3.764434 CAGTAGTGGTGATGAGTGGTACT 59.236 47.826 0.00 0.00 0.00 2.73
2339 3715 3.676324 GCAGTAGTGGTGATGAGTGGTAC 60.676 52.174 0.00 0.00 0.00 3.34
2340 3716 2.496070 GCAGTAGTGGTGATGAGTGGTA 59.504 50.000 0.00 0.00 0.00 3.25
2355 3731 2.548057 GAGAGAGACGAGATGGCAGTAG 59.452 54.545 0.00 0.00 0.00 2.57
2356 3732 2.171659 AGAGAGAGACGAGATGGCAGTA 59.828 50.000 0.00 0.00 0.00 2.74
2358 3734 1.334556 CAGAGAGAGACGAGATGGCAG 59.665 57.143 0.00 0.00 0.00 4.85
2359 3735 1.340502 ACAGAGAGAGACGAGATGGCA 60.341 52.381 0.00 0.00 0.00 4.92
2360 3736 1.065401 CACAGAGAGAGACGAGATGGC 59.935 57.143 0.00 0.00 0.00 4.40
2362 3738 1.267982 CGCACAGAGAGAGACGAGATG 60.268 57.143 0.00 0.00 0.00 2.90
2363 3739 1.013596 CGCACAGAGAGAGACGAGAT 58.986 55.000 0.00 0.00 0.00 2.75
2364 3740 0.320858 ACGCACAGAGAGAGACGAGA 60.321 55.000 0.00 0.00 0.00 4.04
2365 3741 0.096281 GACGCACAGAGAGAGACGAG 59.904 60.000 0.00 0.00 0.00 4.18
2366 3742 0.320858 AGACGCACAGAGAGAGACGA 60.321 55.000 0.00 0.00 0.00 4.20
2367 3743 0.096281 GAGACGCACAGAGAGAGACG 59.904 60.000 0.00 0.00 0.00 4.18
2370 3746 0.732571 GGAGAGACGCACAGAGAGAG 59.267 60.000 0.00 0.00 0.00 3.20
2378 3754 0.390340 TCAGCAATGGAGAGACGCAC 60.390 55.000 0.00 0.00 0.00 5.34
2381 3757 2.658538 CGTCAGCAATGGAGAGACG 58.341 57.895 0.00 0.00 44.64 4.18
2453 3829 3.883489 AGGTAAACAAGTTTGACCAGCTC 59.117 43.478 18.04 0.00 33.08 4.09
2497 3881 8.423349 TGATCATTGTTTTCTTTTGTGAGGAAT 58.577 29.630 0.00 0.00 0.00 3.01
2502 3886 9.251792 CATTCTGATCATTGTTTTCTTTTGTGA 57.748 29.630 0.00 0.00 0.00 3.58
2534 3918 1.287503 GCAATCGGCGGTGGAAAAA 59.712 52.632 7.21 0.00 0.00 1.94
2535 3919 2.958576 GCAATCGGCGGTGGAAAA 59.041 55.556 7.21 0.00 0.00 2.29
2550 3934 0.958091 ATTTGTTTACAGCTGCCGCA 59.042 45.000 15.27 5.16 39.10 5.69
2565 3949 5.109210 TGACGTATGCCTCTGACTAATTTG 58.891 41.667 0.00 0.00 0.00 2.32
2566 3950 5.339008 TGACGTATGCCTCTGACTAATTT 57.661 39.130 0.00 0.00 0.00 1.82
2567 3951 5.105310 AGTTGACGTATGCCTCTGACTAATT 60.105 40.000 0.00 0.00 0.00 1.40
2568 3952 4.402793 AGTTGACGTATGCCTCTGACTAAT 59.597 41.667 0.00 0.00 0.00 1.73
2576 3960 2.000447 GTGGAAGTTGACGTATGCCTC 59.000 52.381 0.00 0.00 0.00 4.70
2607 3994 6.636666 AATCGCGAACTAACTAAAATTCGA 57.363 33.333 15.24 0.00 45.18 3.71
2643 4046 4.082190 CCAGCACTGCTAACTACTAGTGAA 60.082 45.833 5.39 0.00 42.28 3.18
2645 4048 3.193691 ACCAGCACTGCTAACTACTAGTG 59.806 47.826 5.39 0.00 42.51 2.74
2658 4061 8.965172 CGTAGTATTAAATAACTACCAGCACTG 58.035 37.037 15.18 0.00 43.31 3.66
2680 4083 2.313317 TGGCAATCCCCTAGTACGTAG 58.687 52.381 0.00 0.00 0.00 3.51
2682 4085 1.802553 ATGGCAATCCCCTAGTACGT 58.197 50.000 0.00 0.00 0.00 3.57
2683 4086 3.369471 CCATATGGCAATCCCCTAGTACG 60.369 52.174 9.29 0.00 0.00 3.67
2684 4087 3.054361 CCCATATGGCAATCCCCTAGTAC 60.054 52.174 16.97 0.00 0.00 2.73
2687 4115 2.278245 TCCCATATGGCAATCCCCTAG 58.722 52.381 16.97 0.00 0.00 3.02
2694 4122 2.463752 GCATGGATCCCATATGGCAAT 58.536 47.619 16.97 11.57 43.15 3.56
2697 4125 1.033746 CCGCATGGATCCCATATGGC 61.034 60.000 16.97 3.12 43.15 4.40
2710 4138 5.902613 ATATGGGATCAATTTACCGCATG 57.097 39.130 0.00 0.00 0.00 4.06
2713 4141 7.328737 ACTAGTATATGGGATCAATTTACCGC 58.671 38.462 0.00 0.00 0.00 5.68
2733 4161 9.854668 AGTCATACTACATCTGTCATTACTAGT 57.145 33.333 0.00 0.00 0.00 2.57
2736 4164 9.809096 CAAAGTCATACTACATCTGTCATTACT 57.191 33.333 0.00 0.00 0.00 2.24
2737 4165 9.587772 ACAAAGTCATACTACATCTGTCATTAC 57.412 33.333 0.00 0.00 0.00 1.89
2739 4167 8.939929 CAACAAAGTCATACTACATCTGTCATT 58.060 33.333 0.00 0.00 0.00 2.57
2740 4168 8.314021 TCAACAAAGTCATACTACATCTGTCAT 58.686 33.333 0.00 0.00 0.00 3.06
2741 4169 7.666623 TCAACAAAGTCATACTACATCTGTCA 58.333 34.615 0.00 0.00 0.00 3.58
2742 4170 8.709386 ATCAACAAAGTCATACTACATCTGTC 57.291 34.615 0.00 0.00 0.00 3.51
2743 4171 9.507329 AAATCAACAAAGTCATACTACATCTGT 57.493 29.630 0.00 0.00 0.00 3.41
2744 4172 9.764870 CAAATCAACAAAGTCATACTACATCTG 57.235 33.333 0.00 0.00 0.00 2.90
2745 4173 8.950210 CCAAATCAACAAAGTCATACTACATCT 58.050 33.333 0.00 0.00 0.00 2.90
2746 4174 8.730680 ACCAAATCAACAAAGTCATACTACATC 58.269 33.333 0.00 0.00 0.00 3.06
2747 4175 8.635765 ACCAAATCAACAAAGTCATACTACAT 57.364 30.769 0.00 0.00 0.00 2.29
2748 4176 8.349245 CAACCAAATCAACAAAGTCATACTACA 58.651 33.333 0.00 0.00 0.00 2.74
2793 4221 3.800261 GCTTGCTCCTCATGCTAACGATA 60.800 47.826 0.00 0.00 41.21 2.92
2794 4222 2.831333 CTTGCTCCTCATGCTAACGAT 58.169 47.619 0.00 0.00 0.00 3.73
2795 4223 1.740380 GCTTGCTCCTCATGCTAACGA 60.740 52.381 0.00 0.00 41.21 3.85
2796 4224 0.654683 GCTTGCTCCTCATGCTAACG 59.345 55.000 0.00 0.00 41.21 3.18
2797 4225 1.020437 GGCTTGCTCCTCATGCTAAC 58.980 55.000 0.00 0.00 43.21 2.34
2885 4318 2.936202 TGCTAGGTAAGGTACGGTAGG 58.064 52.381 0.00 0.00 0.00 3.18
2886 4319 3.305199 GCATGCTAGGTAAGGTACGGTAG 60.305 52.174 11.37 0.00 0.00 3.18
2887 4320 2.624838 GCATGCTAGGTAAGGTACGGTA 59.375 50.000 11.37 0.00 0.00 4.02
2888 4321 1.411612 GCATGCTAGGTAAGGTACGGT 59.588 52.381 11.37 0.00 0.00 4.83
2889 4322 1.687123 AGCATGCTAGGTAAGGTACGG 59.313 52.381 21.21 0.00 0.00 4.02
2890 4323 3.454371 AAGCATGCTAGGTAAGGTACG 57.546 47.619 23.00 0.00 0.00 3.67
2891 4324 4.127907 GGAAAGCATGCTAGGTAAGGTAC 58.872 47.826 23.00 3.23 0.00 3.34
2927 4360 1.871676 CGCATCATCCATCAACTCCAG 59.128 52.381 0.00 0.00 0.00 3.86
2973 4406 8.948401 AGAAGAATTAGTAGGAGAGATGCATA 57.052 34.615 0.00 0.00 0.00 3.14
2974 4407 7.854166 AGAAGAATTAGTAGGAGAGATGCAT 57.146 36.000 0.00 0.00 0.00 3.96
2975 4408 7.450014 CCTAGAAGAATTAGTAGGAGAGATGCA 59.550 40.741 0.00 0.00 37.14 3.96
2976 4409 7.668052 TCCTAGAAGAATTAGTAGGAGAGATGC 59.332 40.741 0.00 0.00 38.38 3.91
2984 4417 7.957002 TGCATTCTCCTAGAAGAATTAGTAGG 58.043 38.462 0.71 0.00 42.05 3.18
3014 4447 4.431416 AAGGCGTTTGGGATGATATGTA 57.569 40.909 0.00 0.00 0.00 2.29
3016 4449 3.303990 CGAAAGGCGTTTGGGATGATATG 60.304 47.826 9.48 0.00 34.64 1.78
3017 4450 2.878406 CGAAAGGCGTTTGGGATGATAT 59.122 45.455 9.48 0.00 34.64 1.63
3018 4451 2.093394 TCGAAAGGCGTTTGGGATGATA 60.093 45.455 9.48 0.00 41.80 2.15
3019 4452 1.094785 CGAAAGGCGTTTGGGATGAT 58.905 50.000 9.48 0.00 34.64 2.45
3020 4453 0.035598 TCGAAAGGCGTTTGGGATGA 59.964 50.000 9.48 0.00 41.80 2.92
3021 4454 0.878416 TTCGAAAGGCGTTTGGGATG 59.122 50.000 9.48 0.00 41.80 3.51
3054 4487 3.039405 CGCAAAAAGTCACGTTGCAATA 58.961 40.909 0.59 0.00 46.32 1.90
3056 4489 1.263776 CGCAAAAAGTCACGTTGCAA 58.736 45.000 12.52 0.00 46.32 4.08
3057 4490 0.169230 ACGCAAAAAGTCACGTTGCA 59.831 45.000 12.52 0.00 46.32 4.08
3058 4491 2.034076 CTACGCAAAAAGTCACGTTGC 58.966 47.619 4.35 4.35 43.32 4.17
3059 4492 3.531982 CTCTACGCAAAAAGTCACGTTG 58.468 45.455 0.00 0.00 39.78 4.10
3060 4493 2.542595 CCTCTACGCAAAAAGTCACGTT 59.457 45.455 0.00 0.00 39.78 3.99
3061 4494 2.132762 CCTCTACGCAAAAAGTCACGT 58.867 47.619 0.00 0.00 42.22 4.49
3062 4495 2.132762 ACCTCTACGCAAAAAGTCACG 58.867 47.619 0.00 0.00 0.00 4.35
3063 4496 3.558418 TCAACCTCTACGCAAAAAGTCAC 59.442 43.478 0.00 0.00 0.00 3.67
3064 4497 3.799366 TCAACCTCTACGCAAAAAGTCA 58.201 40.909 0.00 0.00 0.00 3.41
3066 4499 5.767816 AAATCAACCTCTACGCAAAAAGT 57.232 34.783 0.00 0.00 0.00 2.66
3067 4500 5.339611 CGAAAATCAACCTCTACGCAAAAAG 59.660 40.000 0.00 0.00 0.00 2.27
3108 4555 5.119931 TGCTTAACTAGGTTTTGCACATG 57.880 39.130 0.00 0.00 31.66 3.21
3109 4556 5.772521 CTTGCTTAACTAGGTTTTGCACAT 58.227 37.500 0.00 0.00 34.41 3.21
3110 4557 4.499019 GCTTGCTTAACTAGGTTTTGCACA 60.499 41.667 0.00 0.00 34.41 4.57
3111 4558 3.981416 GCTTGCTTAACTAGGTTTTGCAC 59.019 43.478 0.00 0.00 34.41 4.57
3118 4565 6.485830 TCTCATATGCTTGCTTAACTAGGT 57.514 37.500 0.00 0.00 0.00 3.08
3169 4616 0.769873 CCTGCTCCCCATGATTAGCT 59.230 55.000 12.38 0.00 35.95 3.32
3291 4744 2.440817 GGTGGGGTGGGGTAGATCG 61.441 68.421 0.00 0.00 0.00 3.69
3325 4779 5.220719 GGAACGAATTAGAAATGGTTACCCG 60.221 44.000 0.00 0.00 0.00 5.28
3343 4797 2.143122 GAGCACATGTGAAAGGAACGA 58.857 47.619 29.80 0.00 0.00 3.85
3345 4799 2.485814 GAGGAGCACATGTGAAAGGAAC 59.514 50.000 29.80 9.56 0.00 3.62
3424 4883 0.320771 GGCGACAGTGAACAGTCCAT 60.321 55.000 0.00 0.00 0.00 3.41
3433 4892 0.458370 CATGTGATCGGCGACAGTGA 60.458 55.000 13.76 0.00 0.00 3.41
3434 4893 0.458370 TCATGTGATCGGCGACAGTG 60.458 55.000 13.76 13.53 0.00 3.66
3435 4894 0.179127 CTCATGTGATCGGCGACAGT 60.179 55.000 13.76 0.00 0.00 3.55
3436 4895 0.873312 CCTCATGTGATCGGCGACAG 60.873 60.000 13.76 1.53 0.00 3.51
3437 4896 1.141665 CCTCATGTGATCGGCGACA 59.858 57.895 13.76 7.13 0.00 4.35
3438 4897 0.872021 GACCTCATGTGATCGGCGAC 60.872 60.000 13.76 7.17 0.00 5.19
3439 4898 1.037579 AGACCTCATGTGATCGGCGA 61.038 55.000 13.87 13.87 0.00 5.54
3440 4899 0.596083 GAGACCTCATGTGATCGGCG 60.596 60.000 0.00 0.00 0.00 6.46
3442 4901 0.741326 ACGAGACCTCATGTGATCGG 59.259 55.000 16.01 0.00 37.19 4.18
3443 4902 2.031595 CCTACGAGACCTCATGTGATCG 60.032 54.545 12.36 12.36 38.25 3.69
3444 4903 3.215151 TCCTACGAGACCTCATGTGATC 58.785 50.000 0.00 0.00 0.00 2.92
3445 4904 3.298686 TCCTACGAGACCTCATGTGAT 57.701 47.619 0.00 0.00 0.00 3.06
3446 4905 2.801077 TCCTACGAGACCTCATGTGA 57.199 50.000 0.00 0.00 0.00 3.58
3448 4907 2.695666 CCATTCCTACGAGACCTCATGT 59.304 50.000 0.00 0.00 0.00 3.21
3449 4908 2.959030 TCCATTCCTACGAGACCTCATG 59.041 50.000 0.00 0.00 0.00 3.07
3450 4909 2.959707 GTCCATTCCTACGAGACCTCAT 59.040 50.000 0.00 0.00 0.00 2.90
3459 4932 1.473434 GGAAGGCAGTCCATTCCTACG 60.473 57.143 2.57 0.00 37.03 3.51
3576 5049 0.737219 GAAGCAGGCATGTGATGGAC 59.263 55.000 0.00 0.00 0.00 4.02
3579 5052 2.416836 CCAAAGAAGCAGGCATGTGATG 60.417 50.000 0.00 0.00 0.00 3.07
3733 5209 1.519408 AACAACCGAGGAAATGACCG 58.481 50.000 0.00 0.00 34.73 4.79
3746 5222 7.010923 TGCTGATGTGTTTTTCATTAAACAACC 59.989 33.333 3.75 0.00 46.27 3.77
3791 5267 2.169144 CCCATCTCCAATTGAAAAGCCC 59.831 50.000 7.12 0.00 0.00 5.19
3806 5282 3.265479 CCACTCTTTCCTTTCTCCCATCT 59.735 47.826 0.00 0.00 0.00 2.90
3843 5319 5.638234 AGCTACTGTCGGTTGAGTATTTTTC 59.362 40.000 0.00 0.00 0.00 2.29
3847 5324 3.676324 GCAGCTACTGTCGGTTGAGTATT 60.676 47.826 0.00 0.00 33.43 1.89
3851 5328 0.038251 TGCAGCTACTGTCGGTTGAG 60.038 55.000 0.00 0.00 33.43 3.02
3905 5382 2.667470 TCCAACCACCGAATCCAAAAA 58.333 42.857 0.00 0.00 0.00 1.94
3906 5383 2.366640 TCCAACCACCGAATCCAAAA 57.633 45.000 0.00 0.00 0.00 2.44
3907 5384 2.224892 TGATCCAACCACCGAATCCAAA 60.225 45.455 0.00 0.00 0.00 3.28
3908 5385 1.352687 TGATCCAACCACCGAATCCAA 59.647 47.619 0.00 0.00 0.00 3.53
3909 5386 0.988063 TGATCCAACCACCGAATCCA 59.012 50.000 0.00 0.00 0.00 3.41
3911 5388 2.107950 TGTGATCCAACCACCGAATC 57.892 50.000 0.00 0.00 33.80 2.52
3913 5390 1.600023 GTTGTGATCCAACCACCGAA 58.400 50.000 13.20 0.00 46.39 4.30
3914 5391 3.315765 GTTGTGATCCAACCACCGA 57.684 52.632 13.20 0.00 46.39 4.69
3936 5419 0.674895 CTGGCTCAGTTACCAGTGCC 60.675 60.000 10.28 10.28 46.95 5.01
3954 5437 2.517875 GGCCGCATGATCCTTGCT 60.518 61.111 13.84 0.00 37.96 3.91
3955 5438 3.599704 GGGCCGCATGATCCTTGC 61.600 66.667 0.00 7.49 36.74 4.01
3979 5471 1.969589 AACCCGGCCGAACATCAAC 60.970 57.895 30.73 0.00 0.00 3.18
4006 5498 3.270027 CCGTGCAGAATTGATCAGGTTA 58.730 45.455 0.00 0.00 0.00 2.85
4007 5499 2.086869 CCGTGCAGAATTGATCAGGTT 58.913 47.619 0.00 0.00 0.00 3.50
4015 5507 0.592637 TTCAGTGCCGTGCAGAATTG 59.407 50.000 0.00 0.00 40.08 2.32
4035 5527 4.175516 TCCATCGTTACACGGAACATAAC 58.824 43.478 0.00 0.00 42.81 1.89
4039 5531 2.612604 CATCCATCGTTACACGGAACA 58.387 47.619 0.00 0.00 42.81 3.18
4045 5537 2.032894 CGAATGGCATCCATCGTTACAC 60.033 50.000 10.99 0.00 44.40 2.90
4046 5538 2.209273 CGAATGGCATCCATCGTTACA 58.791 47.619 10.99 0.00 44.40 2.41
4047 5539 1.531149 CCGAATGGCATCCATCGTTAC 59.469 52.381 16.29 0.00 44.40 2.50
4068 5809 0.603707 CCAACTGACAGACGCCATGT 60.604 55.000 10.08 0.00 0.00 3.21
4087 5828 3.561310 TGTGAGTGCAGAATCTTTGACAC 59.439 43.478 0.00 0.00 0.00 3.67
4112 5884 5.104941 TGTCCTCCATTTGTCTGGTATACTG 60.105 44.000 2.25 0.00 37.57 2.74
4114 5886 5.353394 TGTCCTCCATTTGTCTGGTATAC 57.647 43.478 0.00 0.00 37.57 1.47
4126 5899 2.810400 CGTTGTCAACCTGTCCTCCATT 60.810 50.000 10.12 0.00 0.00 3.16
4184 5958 6.960109 GCGATCGCTGGTAGTCAAACTACA 62.960 50.000 31.94 4.98 43.90 2.74
4185 5959 4.571674 GCGATCGCTGGTAGTCAAACTAC 61.572 52.174 31.94 8.43 42.75 2.73
4245 6023 6.159988 CAGGAACACCTTCTAGTAGTCAAAG 58.840 44.000 0.00 0.00 30.75 2.77
4341 6152 1.231963 ACCTTTGACCCCTTTGACCT 58.768 50.000 0.00 0.00 0.00 3.85
4342 6153 2.082140 AACCTTTGACCCCTTTGACC 57.918 50.000 0.00 0.00 0.00 4.02
4343 6154 5.801531 ATAAAACCTTTGACCCCTTTGAC 57.198 39.130 0.00 0.00 0.00 3.18
4344 6155 6.816616 AAATAAAACCTTTGACCCCTTTGA 57.183 33.333 0.00 0.00 0.00 2.69
4345 6156 7.501844 TGTAAATAAAACCTTTGACCCCTTTG 58.498 34.615 0.00 0.00 0.00 2.77
4346 6157 7.678207 TGTAAATAAAACCTTTGACCCCTTT 57.322 32.000 0.00 0.00 0.00 3.11
4347 6158 7.678207 TTGTAAATAAAACCTTTGACCCCTT 57.322 32.000 0.00 0.00 0.00 3.95
4348 6159 7.678207 TTTGTAAATAAAACCTTTGACCCCT 57.322 32.000 0.00 0.00 0.00 4.79
4349 6160 8.911918 AATTTGTAAATAAAACCTTTGACCCC 57.088 30.769 0.00 0.00 0.00 4.95
4353 6164 9.413048 CGGCTAATTTGTAAATAAAACCTTTGA 57.587 29.630 0.00 0.00 0.00 2.69
4354 6165 9.198837 ACGGCTAATTTGTAAATAAAACCTTTG 57.801 29.630 0.00 0.00 0.00 2.77
4355 6166 9.414295 GACGGCTAATTTGTAAATAAAACCTTT 57.586 29.630 0.00 0.00 0.00 3.11
4356 6167 8.578151 TGACGGCTAATTTGTAAATAAAACCTT 58.422 29.630 0.00 0.00 0.00 3.50
4357 6168 8.113173 TGACGGCTAATTTGTAAATAAAACCT 57.887 30.769 0.00 0.00 0.00 3.50
4358 6169 8.745464 TTGACGGCTAATTTGTAAATAAAACC 57.255 30.769 0.00 0.00 0.00 3.27
4366 6177 9.968870 AGTTTTTAATTGACGGCTAATTTGTAA 57.031 25.926 4.38 0.00 0.00 2.41
4368 6179 9.968870 TTAGTTTTTAATTGACGGCTAATTTGT 57.031 25.926 4.38 0.00 0.00 2.83
4392 6203 4.209538 ACAGCTGATGCATGGCTAATTTA 58.790 39.130 23.35 0.00 42.74 1.40
4421 6236 8.584157 TGCAAGGATCAAAACACAAATTATACT 58.416 29.630 0.00 0.00 0.00 2.12
4426 6241 7.571080 AATTGCAAGGATCAAAACACAAATT 57.429 28.000 4.94 0.00 0.00 1.82
4431 6291 7.656707 ATGTTAATTGCAAGGATCAAAACAC 57.343 32.000 4.94 0.00 31.23 3.32
4443 6303 6.295236 CCCAGGAAGAGAAATGTTAATTGCAA 60.295 38.462 0.00 0.00 0.00 4.08
4446 6306 5.394553 GGCCCAGGAAGAGAAATGTTAATTG 60.395 44.000 0.00 0.00 0.00 2.32
4447 6307 4.711846 GGCCCAGGAAGAGAAATGTTAATT 59.288 41.667 0.00 0.00 0.00 1.40
4462 6322 2.811514 GCTGATCGATGGCCCAGGA 61.812 63.158 0.54 0.00 0.00 3.86
4463 6323 2.281345 GCTGATCGATGGCCCAGG 60.281 66.667 0.54 0.00 0.00 4.45
4998 6860 3.744719 TCGTGCGGGTTCTCCTCG 61.745 66.667 0.00 0.00 0.00 4.63
5181 7043 2.035442 GCCGCTTCTTCACAGGTCC 61.035 63.158 0.00 0.00 0.00 4.46
5254 7116 8.125448 ACTCTTTCTTTTCTCACATTTTTCTCG 58.875 33.333 0.00 0.00 0.00 4.04
5297 7165 2.092646 CCATCCATCCAACGGTCCTAAA 60.093 50.000 0.00 0.00 0.00 1.85
5304 7172 1.453745 CCACCCATCCATCCAACGG 60.454 63.158 0.00 0.00 0.00 4.44
5307 7175 2.044215 ACAAATCCACCCATCCATCCAA 59.956 45.455 0.00 0.00 0.00 3.53
5362 7231 4.742438 TCCTACACGAATGAAACAAAGC 57.258 40.909 0.00 0.00 0.00 3.51
5430 7300 2.174639 TGGTCAACTCAAGGTCAACCAT 59.825 45.455 1.33 0.00 37.44 3.55
5431 7301 1.562008 TGGTCAACTCAAGGTCAACCA 59.438 47.619 1.33 0.00 38.94 3.67
5432 7302 2.341846 TGGTCAACTCAAGGTCAACC 57.658 50.000 0.00 0.00 34.74 3.77
5461 7337 0.187606 AAACCTTTCCCGCCTTTCCT 59.812 50.000 0.00 0.00 0.00 3.36
5462 7338 1.045407 AAAACCTTTCCCGCCTTTCC 58.955 50.000 0.00 0.00 0.00 3.13
5463 7339 2.750948 GAAAAACCTTTCCCGCCTTTC 58.249 47.619 0.00 0.00 35.80 2.62
5464 7340 2.902705 GAAAAACCTTTCCCGCCTTT 57.097 45.000 0.00 0.00 35.80 3.11
5505 7381 0.809385 CGCGGAGAGAAACTGGACTA 59.191 55.000 0.00 0.00 0.00 2.59
5523 7399 1.400494 GATGGAAATTTCGTGGGGACG 59.600 52.381 11.95 0.00 0.00 4.79
5525 7401 1.341581 GGGATGGAAATTTCGTGGGGA 60.342 52.381 11.95 0.00 0.00 4.81
5527 7403 1.111277 GGGGATGGAAATTTCGTGGG 58.889 55.000 11.95 0.00 0.00 4.61
5530 7406 2.446435 CAGTGGGGATGGAAATTTCGT 58.554 47.619 11.95 3.41 0.00 3.85
5567 7450 1.560923 CTTCTCGAGCATTACCACCG 58.439 55.000 7.81 0.00 0.00 4.94
5727 7639 3.834799 GCGACCGGAATCGACCCT 61.835 66.667 17.78 0.00 45.13 4.34
5877 7799 4.443266 AGCGAGCGAACAGGGAGC 62.443 66.667 0.00 0.00 0.00 4.70
5903 7825 1.355796 CGCACAATTTACTCGGCCGA 61.356 55.000 29.03 29.03 0.00 5.54
5904 7826 1.060308 CGCACAATTTACTCGGCCG 59.940 57.895 22.12 22.12 0.00 6.13
5914 7836 1.150536 AGGACACCACCGCACAATT 59.849 52.632 0.00 0.00 34.73 2.32
5915 7837 1.600636 CAGGACACCACCGCACAAT 60.601 57.895 0.00 0.00 34.73 2.71
5989 7913 2.053116 GCACGCGCAATCCGTATG 60.053 61.111 5.73 0.00 37.12 2.39
5990 7914 3.269347 GGCACGCGCAATCCGTAT 61.269 61.111 5.73 0.00 41.24 3.06
6098 8041 0.612732 TTTCATGCTGGGCCAAGAGG 60.613 55.000 12.85 0.00 38.23 3.69
6101 8044 1.136305 CAGATTTCATGCTGGGCCAAG 59.864 52.381 8.04 1.30 0.00 3.61
6108 8051 6.160684 TGATTTTTCACCAGATTTCATGCTG 58.839 36.000 0.00 0.00 0.00 4.41
6168 8119 4.274865 GCGCTGCTAGCTAACAATTTTAG 58.725 43.478 17.23 1.50 39.60 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.