Multiple sequence alignment - TraesCS6A01G121100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G121100 chr6A 100.000 3284 0 0 1 3284 93424789 93428072 0.000000e+00 6065.0
1 TraesCS6A01G121100 chr6A 95.410 305 12 2 2982 3284 499833278 499832974 4.930000e-133 484.0
2 TraesCS6A01G121100 chr6A 92.045 176 13 1 2049 2223 93436711 93436886 2.530000e-61 246.0
3 TraesCS6A01G121100 chr6A 88.889 171 11 8 2222 2391 93436790 93436953 1.540000e-48 204.0
4 TraesCS6A01G121100 chr6A 86.782 174 15 3 2390 2560 93436990 93437158 1.560000e-43 187.0
5 TraesCS6A01G121100 chr6A 86.885 122 15 1 2814 2934 93437266 93437387 5.720000e-28 135.0
6 TraesCS6A01G121100 chr6D 93.666 1784 65 14 449 2196 77686162 77687933 0.000000e+00 2625.0
7 TraesCS6A01G121100 chr6D 88.516 775 54 19 2221 2990 77687864 77688608 0.000000e+00 905.0
8 TraesCS6A01G121100 chr6D 85.838 346 37 7 2221 2561 77757675 77758013 1.120000e-94 357.0
9 TraesCS6A01G121100 chr6D 90.909 176 15 1 2049 2223 77694722 77694897 5.480000e-58 235.0
10 TraesCS6A01G121100 chr6D 77.419 372 53 16 5 349 77685597 77685964 3.340000e-45 193.0
11 TraesCS6A01G121100 chr6D 81.778 225 23 9 2390 2601 77694999 77695218 4.360000e-39 172.0
12 TraesCS6A01G121100 chr6D 80.311 193 21 12 2623 2808 77758120 77758302 2.660000e-26 130.0
13 TraesCS6A01G121100 chr6D 94.872 39 1 1 2864 2901 77725984 77726022 3.540000e-05 60.2
14 TraesCS6A01G121100 chr6B 93.881 1569 61 14 672 2222 150252748 150254299 0.000000e+00 2333.0
15 TraesCS6A01G121100 chr6B 86.875 800 50 17 2221 2987 150254204 150254981 0.000000e+00 845.0
16 TraesCS6A01G121100 chr6B 90.395 177 15 2 2049 2223 150287805 150287981 7.090000e-57 231.0
17 TraesCS6A01G121100 chr6B 78.933 375 27 18 2395 2748 150278712 150279055 1.190000e-49 207.0
18 TraesCS6A01G121100 chr6B 82.906 234 20 8 2395 2613 150288090 150288318 3.340000e-45 193.0
19 TraesCS6A01G121100 chr6B 85.294 170 17 8 2223 2391 150287886 150288048 5.640000e-38 169.0
20 TraesCS6A01G121100 chr6B 86.957 138 8 4 2086 2223 150278481 150278608 2.640000e-31 147.0
21 TraesCS6A01G121100 chr7A 96.296 297 10 1 2989 3284 648884645 648884349 1.370000e-133 486.0
22 TraesCS6A01G121100 chr7A 94.333 300 14 2 2988 3284 134012298 134012597 1.070000e-124 457.0
23 TraesCS6A01G121100 chr3A 96.296 297 10 1 2989 3284 731092708 731093004 1.370000e-133 486.0
24 TraesCS6A01G121100 chr3A 93.355 301 18 1 2986 3284 549125645 549125945 8.360000e-121 444.0
25 TraesCS6A01G121100 chr5A 96.259 294 8 2 2993 3284 557477056 557476764 2.290000e-131 479.0
26 TraesCS6A01G121100 chr4A 95.286 297 12 2 2989 3284 558660097 558660392 1.380000e-128 470.0
27 TraesCS6A01G121100 chr4A 94.389 303 13 3 2984 3284 127685865 127686165 2.310000e-126 462.0
28 TraesCS6A01G121100 chr2A 94.949 297 13 2 2989 3284 676467862 676468157 6.420000e-127 464.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G121100 chr6A 93424789 93428072 3283 False 6065.0 6065 100.000000 1 3284 1 chr6A.!!$F1 3283
1 TraesCS6A01G121100 chr6D 77685597 77688608 3011 False 1241.0 2625 86.533667 5 2990 3 chr6D.!!$F2 2985
2 TraesCS6A01G121100 chr6D 77757675 77758302 627 False 243.5 357 83.074500 2221 2808 2 chr6D.!!$F4 587
3 TraesCS6A01G121100 chr6B 150252748 150254981 2233 False 1589.0 2333 90.378000 672 2987 2 chr6B.!!$F1 2315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.036952 CCGTTGACCTGACTGCTGAT 60.037 55.0 0.00 0.0 0.00 2.90 F
584 754 0.107703 TTGTCCTCGATGGTCATGGC 60.108 55.0 0.00 0.0 34.07 4.40 F
689 873 0.179015 TGCCGGAAGCTACCAAAACA 60.179 50.0 5.05 0.0 44.23 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2203 0.884514 CTCGGCTCACTTCTCTGTGA 59.115 55.000 0.0 0.0 43.72 3.58 R
2270 2472 2.991190 CAATGCACATTCCAGTTTCAGC 59.009 45.455 0.0 0.0 0.00 4.26 R
2618 2894 0.244994 ACAGAGGTAGCGAGCACTTG 59.755 55.000 0.0 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 2.983592 GGGTGCCCACTTGGTTCG 60.984 66.667 1.66 0.00 36.04 3.95
93 94 2.258726 GGTGCCCACTTGGTTCGTC 61.259 63.158 0.00 0.00 36.04 4.20
94 95 2.112297 TGCCCACTTGGTTCGTCC 59.888 61.111 0.00 0.00 36.04 4.79
98 99 2.027625 CCACTTGGTTCGTCCGCTC 61.028 63.158 0.00 0.00 39.52 5.03
114 115 1.669115 CTCAGCCCACAGTTGACCG 60.669 63.158 0.00 0.00 31.65 4.79
115 116 2.111043 CAGCCCACAGTTGACCGT 59.889 61.111 0.00 0.00 0.00 4.83
120 121 1.164041 CCCACAGTTGACCGTTGACC 61.164 60.000 0.00 0.00 0.00 4.02
121 122 0.179056 CCACAGTTGACCGTTGACCT 60.179 55.000 0.00 0.00 0.00 3.85
131 132 0.036952 CCGTTGACCTGACTGCTGAT 60.037 55.000 0.00 0.00 0.00 2.90
132 133 1.204704 CCGTTGACCTGACTGCTGATA 59.795 52.381 0.00 0.00 0.00 2.15
137 138 5.106555 CGTTGACCTGACTGCTGATATTTTT 60.107 40.000 0.00 0.00 0.00 1.94
165 166 7.173863 ACAAGTTCACATAGAAAAGTGTACG 57.826 36.000 0.00 0.00 39.86 3.67
174 198 8.286800 CACATAGAAAAGTGTACGGATTTGAAA 58.713 33.333 0.00 0.00 0.00 2.69
175 199 8.842280 ACATAGAAAAGTGTACGGATTTGAAAA 58.158 29.630 0.00 0.00 0.00 2.29
178 202 8.574196 AGAAAAGTGTACGGATTTGAAAAATG 57.426 30.769 0.00 0.00 0.00 2.32
181 205 8.710835 AAAGTGTACGGATTTGAAAAATGTTT 57.289 26.923 0.00 0.00 0.00 2.83
183 207 6.200097 AGTGTACGGATTTGAAAAATGTTTGC 59.800 34.615 0.00 0.00 0.00 3.68
191 215 9.172820 GGATTTGAAAAATGTTTGCTGAATTTC 57.827 29.630 0.00 0.00 0.00 2.17
373 488 9.968870 AAGTTTTAAAAAGAAAACCAAAAACCC 57.031 25.926 1.31 0.00 46.15 4.11
380 495 7.825331 AAAGAAAACCAAAAACCCAAAAAGA 57.175 28.000 0.00 0.00 0.00 2.52
385 500 7.825331 AAACCAAAAACCCAAAAAGAGAAAA 57.175 28.000 0.00 0.00 0.00 2.29
386 501 8.415950 AAACCAAAAACCCAAAAAGAGAAAAT 57.584 26.923 0.00 0.00 0.00 1.82
387 502 7.389803 ACCAAAAACCCAAAAAGAGAAAATG 57.610 32.000 0.00 0.00 0.00 2.32
388 503 7.171653 ACCAAAAACCCAAAAAGAGAAAATGA 58.828 30.769 0.00 0.00 0.00 2.57
390 505 7.967854 CCAAAAACCCAAAAAGAGAAAATGAAC 59.032 33.333 0.00 0.00 0.00 3.18
392 507 7.609760 AAACCCAAAAAGAGAAAATGAACAC 57.390 32.000 0.00 0.00 0.00 3.32
393 508 5.670485 ACCCAAAAAGAGAAAATGAACACC 58.330 37.500 0.00 0.00 0.00 4.16
394 509 5.056480 CCCAAAAAGAGAAAATGAACACCC 58.944 41.667 0.00 0.00 0.00 4.61
398 513 7.413988 CCAAAAAGAGAAAATGAACACCCAAAC 60.414 37.037 0.00 0.00 0.00 2.93
399 514 5.930837 AAGAGAAAATGAACACCCAAACA 57.069 34.783 0.00 0.00 0.00 2.83
400 515 5.262588 AGAGAAAATGAACACCCAAACAC 57.737 39.130 0.00 0.00 0.00 3.32
401 516 4.956075 AGAGAAAATGAACACCCAAACACT 59.044 37.500 0.00 0.00 0.00 3.55
403 518 6.777580 AGAGAAAATGAACACCCAAACACTAT 59.222 34.615 0.00 0.00 0.00 2.12
404 519 7.287696 AGAGAAAATGAACACCCAAACACTATT 59.712 33.333 0.00 0.00 0.00 1.73
406 521 8.576442 AGAAAATGAACACCCAAACACTATTAG 58.424 33.333 0.00 0.00 0.00 1.73
407 522 8.472007 AAAATGAACACCCAAACACTATTAGA 57.528 30.769 0.00 0.00 0.00 2.10
408 523 8.650143 AAATGAACACCCAAACACTATTAGAT 57.350 30.769 0.00 0.00 0.00 1.98
409 524 9.747898 AAATGAACACCCAAACACTATTAGATA 57.252 29.630 0.00 0.00 0.00 1.98
410 525 8.964476 ATGAACACCCAAACACTATTAGATAG 57.036 34.615 0.00 0.00 38.81 2.08
411 526 7.913789 TGAACACCCAAACACTATTAGATAGT 58.086 34.615 0.00 0.00 46.56 2.12
431 546 9.257428 AGATAGTATTAGAGTTTACATAGCCCC 57.743 37.037 0.00 0.00 0.00 5.80
432 547 6.342338 AGTATTAGAGTTTACATAGCCCCG 57.658 41.667 0.00 0.00 0.00 5.73
433 548 4.618920 ATTAGAGTTTACATAGCCCCGG 57.381 45.455 0.00 0.00 0.00 5.73
434 549 1.129058 AGAGTTTACATAGCCCCGGG 58.871 55.000 15.80 15.80 0.00 5.73
435 550 0.108019 GAGTTTACATAGCCCCGGGG 59.892 60.000 37.09 37.09 38.57 5.73
445 560 4.426313 CCCCGGGGCTCCAGAAAC 62.426 72.222 31.01 0.00 0.00 2.78
446 561 4.426313 CCCGGGGCTCCAGAAACC 62.426 72.222 14.71 0.00 0.00 3.27
447 562 3.330720 CCGGGGCTCCAGAAACCT 61.331 66.667 1.96 0.00 0.00 3.50
467 626 2.832643 AACATGATGGCCTGGATCAA 57.167 45.000 3.32 0.00 33.59 2.57
528 698 1.913317 CTTCACGATGCTCATGACGA 58.087 50.000 10.08 0.00 0.00 4.20
530 700 1.913317 TCACGATGCTCATGACGAAG 58.087 50.000 10.08 3.24 0.00 3.79
538 708 5.116831 CGATGCTCATGACGAAGAAGAATAG 59.883 44.000 0.00 0.00 0.00 1.73
540 710 3.492756 GCTCATGACGAAGAAGAATAGCC 59.507 47.826 0.00 0.00 0.00 3.93
551 721 4.501433 AGAAGAATAGCCTCTGATCCCAT 58.499 43.478 0.00 0.00 0.00 4.00
555 725 4.286549 AGAATAGCCTCTGATCCCATCTTG 59.713 45.833 0.00 0.00 0.00 3.02
560 730 3.661944 CCTCTGATCCCATCTTGAATCG 58.338 50.000 0.00 0.00 0.00 3.34
561 731 3.070734 CCTCTGATCCCATCTTGAATCGT 59.929 47.826 0.00 0.00 0.00 3.73
565 735 3.452264 TGATCCCATCTTGAATCGTCTGT 59.548 43.478 0.00 0.00 0.00 3.41
573 743 2.347697 TGAATCGTCTGTTGTCCTCG 57.652 50.000 0.00 0.00 0.00 4.63
577 747 0.526211 TCGTCTGTTGTCCTCGATGG 59.474 55.000 0.00 0.00 37.10 3.51
584 754 0.107703 TTGTCCTCGATGGTCATGGC 60.108 55.000 0.00 0.00 34.07 4.40
611 781 1.049289 CCCGGGGTTCCTCCTTCTAG 61.049 65.000 14.71 0.00 36.25 2.43
629 799 1.678970 GGCTTTGGATGACGCCCTT 60.679 57.895 0.00 0.00 36.56 3.95
635 805 0.611618 TGGATGACGCCCTTGCAATT 60.612 50.000 0.00 0.00 37.32 2.32
637 807 1.748493 GGATGACGCCCTTGCAATTTA 59.252 47.619 0.00 0.00 37.32 1.40
640 810 1.068885 TGACGCCCTTGCAATTTAACG 60.069 47.619 0.00 2.75 37.32 3.18
641 811 0.388006 ACGCCCTTGCAATTTAACGC 60.388 50.000 0.00 0.00 37.32 4.84
646 816 2.159448 CCCTTGCAATTTAACGCGATCA 60.159 45.455 15.93 0.00 0.00 2.92
653 823 1.803334 TTTAACGCGATCACAGCCTT 58.197 45.000 15.93 0.00 0.00 4.35
659 829 1.661341 GCGATCACAGCCTTTGAGAT 58.339 50.000 0.00 0.00 39.43 2.75
660 830 1.329906 GCGATCACAGCCTTTGAGATG 59.670 52.381 0.00 0.00 37.26 2.90
681 865 1.115930 GGAGATCCTGCCGGAAGCTA 61.116 60.000 5.05 0.00 44.02 3.32
689 873 0.179015 TGCCGGAAGCTACCAAAACA 60.179 50.000 5.05 0.00 44.23 2.83
739 923 4.794439 GCCGGCCCATTTGTTCGC 62.794 66.667 18.11 0.00 0.00 4.70
825 1019 3.000041 CTGAGCTGCCGTTTATACAACA 59.000 45.455 0.00 0.00 0.00 3.33
826 1020 3.000041 TGAGCTGCCGTTTATACAACAG 59.000 45.455 0.00 0.00 32.66 3.16
868 1062 1.600023 TCGACCGTTGCCATTTCTTT 58.400 45.000 0.00 0.00 0.00 2.52
869 1063 1.533731 TCGACCGTTGCCATTTCTTTC 59.466 47.619 0.00 0.00 0.00 2.62
870 1064 1.535462 CGACCGTTGCCATTTCTTTCT 59.465 47.619 0.00 0.00 0.00 2.52
871 1065 2.031157 CGACCGTTGCCATTTCTTTCTT 60.031 45.455 0.00 0.00 0.00 2.52
897 1091 1.512156 AACCGCACACGATTTCCACC 61.512 55.000 0.00 0.00 43.93 4.61
953 1147 3.614616 CCCTCGAGAAGAACTCAAATTCG 59.385 47.826 15.71 0.00 45.14 3.34
958 1157 1.472878 GAAGAACTCAAATTCGCCCCC 59.527 52.381 0.00 0.00 33.57 5.40
1028 1227 2.358898 AGAGCTCGAGAATCTGAGAAGC 59.641 50.000 18.75 0.00 37.76 3.86
1693 1895 2.103143 CTGGAGCAGTACGCCTCG 59.897 66.667 8.93 0.00 44.04 4.63
1903 2105 2.279517 GCGCCCTTCATCGACGAT 60.280 61.111 4.05 4.05 0.00 3.73
2001 2203 4.232188 TCAGGTACTACAAGGATCTCGT 57.768 45.455 0.00 0.00 36.02 4.18
2007 2209 3.687125 ACTACAAGGATCTCGTCACAGA 58.313 45.455 0.00 0.00 0.00 3.41
2021 2223 0.735632 CACAGAGAAGTGAGCCGAGC 60.736 60.000 0.00 0.00 42.05 5.03
2159 2361 9.638239 TCCTGAATGCAGTTTGTTAAATATTTC 57.362 29.630 3.39 0.00 40.63 2.17
2201 2403 4.583907 TGAAACTGGAATGTGCATTGAAGA 59.416 37.500 1.77 0.00 0.00 2.87
2202 2404 5.244402 TGAAACTGGAATGTGCATTGAAGAT 59.756 36.000 1.77 0.00 0.00 2.40
2203 2405 4.713824 ACTGGAATGTGCATTGAAGATG 57.286 40.909 1.77 0.00 0.00 2.90
2204 2406 4.338012 ACTGGAATGTGCATTGAAGATGA 58.662 39.130 1.77 0.00 0.00 2.92
2205 2407 4.768448 ACTGGAATGTGCATTGAAGATGAA 59.232 37.500 1.77 0.00 0.00 2.57
2206 2408 5.244402 ACTGGAATGTGCATTGAAGATGAAA 59.756 36.000 1.77 0.00 0.00 2.69
2207 2409 6.070995 ACTGGAATGTGCATTGAAGATGAAAT 60.071 34.615 1.77 0.00 0.00 2.17
2208 2410 6.703319 TGGAATGTGCATTGAAGATGAAATT 58.297 32.000 1.77 0.00 0.00 1.82
2209 2411 6.592220 TGGAATGTGCATTGAAGATGAAATTG 59.408 34.615 1.77 0.00 0.00 2.32
2210 2412 6.592607 GGAATGTGCATTGAAGATGAAATTGT 59.407 34.615 1.77 0.00 0.00 2.71
2211 2413 6.961359 ATGTGCATTGAAGATGAAATTGTG 57.039 33.333 0.00 0.00 0.00 3.33
2212 2414 4.687018 TGTGCATTGAAGATGAAATTGTGC 59.313 37.500 0.00 0.00 0.00 4.57
2213 2415 4.687018 GTGCATTGAAGATGAAATTGTGCA 59.313 37.500 0.00 0.00 37.69 4.57
2214 2416 5.177881 GTGCATTGAAGATGAAATTGTGCAA 59.822 36.000 0.00 0.00 41.09 4.08
2215 2417 5.935206 TGCATTGAAGATGAAATTGTGCAAT 59.065 32.000 0.00 0.00 37.16 3.56
2216 2418 7.063662 GTGCATTGAAGATGAAATTGTGCAATA 59.936 33.333 0.00 0.00 41.09 1.90
2217 2419 7.766738 TGCATTGAAGATGAAATTGTGCAATAT 59.233 29.630 0.00 0.00 37.16 1.28
2218 2420 8.273557 GCATTGAAGATGAAATTGTGCAATATC 58.726 33.333 0.00 0.00 0.00 1.63
2219 2421 9.308318 CATTGAAGATGAAATTGTGCAATATCA 57.692 29.630 0.00 0.00 0.00 2.15
2222 2424 8.741841 TGAAGATGAAATTGTGCAATATCAAGA 58.258 29.630 0.00 0.00 0.00 3.02
2228 2430 9.577110 TGAAATTGTGCAATATCAAGAATCTTC 57.423 29.630 0.00 0.00 0.00 2.87
2235 2437 9.060347 GTGCAATATCAAGAATCTTCCTGAATA 57.940 33.333 0.00 0.00 31.96 1.75
2284 2486 5.381174 TCAATGAAGCTGAAACTGGAATG 57.619 39.130 0.00 0.00 0.00 2.67
2285 2487 4.828939 TCAATGAAGCTGAAACTGGAATGT 59.171 37.500 0.00 0.00 0.00 2.71
2294 2496 5.273674 TGAAACTGGAATGTGCATTGAAA 57.726 34.783 1.77 0.00 0.00 2.69
2330 2533 6.498304 CAATATCAAGAATTCCTTTGTCGGG 58.502 40.000 0.65 0.00 31.42 5.14
2427 2630 5.816919 TCAAACGAAACTGAAACTGGAATC 58.183 37.500 0.00 0.00 0.00 2.52
2430 2633 2.806244 CGAAACTGAAACTGGAATCGGT 59.194 45.455 0.00 0.00 36.74 4.69
2550 2756 1.533033 GTGGTTTGGGAACAGGGGG 60.533 63.158 0.00 0.00 44.54 5.40
2662 2938 5.831525 TCTGTTTGTAGTTACTCACCTCTCA 59.168 40.000 0.00 0.00 0.00 3.27
2698 3007 5.006386 GTGAACTGAAAATCTCTCACCCAT 58.994 41.667 0.00 0.00 0.00 4.00
2746 3056 9.549078 TTTTGTGTTCCTTTGTTTTTCTAACTT 57.451 25.926 0.00 0.00 0.00 2.66
2747 3057 8.527567 TTGTGTTCCTTTGTTTTTCTAACTTG 57.472 30.769 0.00 0.00 0.00 3.16
2748 3058 7.662897 TGTGTTCCTTTGTTTTTCTAACTTGT 58.337 30.769 0.00 0.00 0.00 3.16
2749 3059 8.794553 TGTGTTCCTTTGTTTTTCTAACTTGTA 58.205 29.630 0.00 0.00 0.00 2.41
2750 3060 9.069078 GTGTTCCTTTGTTTTTCTAACTTGTAC 57.931 33.333 0.00 0.00 0.00 2.90
2791 3102 1.887344 GCCCAATTGTGTCGGCCAAT 61.887 55.000 11.25 0.00 35.23 3.16
2846 3157 4.059459 CGGACTTGTGCGCACGAC 62.059 66.667 33.22 20.96 0.00 4.34
2860 3171 0.511221 CACGACCCAAAGCGTTGTAG 59.489 55.000 11.48 5.03 38.92 2.74
2879 3190 7.255569 GTTGTAGCTTCCAAGTTTTTGTTACT 58.744 34.615 0.00 0.00 32.21 2.24
2893 3204 9.634163 AGTTTTTGTTACTTCCACTACTTTTTG 57.366 29.630 0.00 0.00 0.00 2.44
2916 3227 3.643159 AGCATTATCGTAGACATCGCA 57.357 42.857 0.00 0.00 42.51 5.10
2961 3272 6.476378 ACTGTTATCATAGACACTGCCTTTT 58.524 36.000 0.00 0.00 0.00 2.27
2964 3275 8.856153 TGTTATCATAGACACTGCCTTTTTAA 57.144 30.769 0.00 0.00 0.00 1.52
2968 3279 7.377766 TCATAGACACTGCCTTTTTAATGAC 57.622 36.000 0.00 0.00 0.00 3.06
2969 3280 6.939730 TCATAGACACTGCCTTTTTAATGACA 59.060 34.615 0.00 0.00 0.00 3.58
2972 3283 6.296026 AGACACTGCCTTTTTAATGACACTA 58.704 36.000 0.00 0.00 0.00 2.74
2974 3285 6.062095 ACACTGCCTTTTTAATGACACTACT 58.938 36.000 0.00 0.00 0.00 2.57
2977 3288 6.204882 ACTGCCTTTTTAATGACACTACTGAC 59.795 38.462 0.00 0.00 0.00 3.51
2982 3293 9.268268 CCTTTTTAATGACACTACTGACACTAA 57.732 33.333 0.00 0.00 0.00 2.24
2990 3301 7.497595 TGACACTACTGACACTAAGATTGTTT 58.502 34.615 0.00 0.00 0.00 2.83
2991 3302 7.652105 TGACACTACTGACACTAAGATTGTTTC 59.348 37.037 0.00 0.00 0.00 2.78
2992 3303 7.727181 ACACTACTGACACTAAGATTGTTTCT 58.273 34.615 0.00 0.00 35.70 2.52
2993 3304 8.204836 ACACTACTGACACTAAGATTGTTTCTT 58.795 33.333 0.00 0.00 46.53 2.52
2994 3305 9.046296 CACTACTGACACTAAGATTGTTTCTTT 57.954 33.333 0.00 0.00 42.15 2.52
2995 3306 9.614792 ACTACTGACACTAAGATTGTTTCTTTT 57.385 29.630 0.00 0.00 42.15 2.27
2998 3309 8.122952 ACTGACACTAAGATTGTTTCTTTTTCG 58.877 33.333 0.00 0.00 42.15 3.46
2999 3310 8.203937 TGACACTAAGATTGTTTCTTTTTCGA 57.796 30.769 0.00 0.00 42.15 3.71
3000 3311 8.670135 TGACACTAAGATTGTTTCTTTTTCGAA 58.330 29.630 0.00 0.00 42.15 3.71
3001 3312 9.498307 GACACTAAGATTGTTTCTTTTTCGAAA 57.502 29.630 6.47 6.47 42.15 3.46
3002 3313 9.849166 ACACTAAGATTGTTTCTTTTTCGAAAA 57.151 25.926 19.08 19.08 42.15 2.29
3004 3315 9.516314 ACTAAGATTGTTTCTTTTTCGAAAAGG 57.484 29.630 22.73 22.73 42.15 3.11
3005 3316 9.730420 CTAAGATTGTTTCTTTTTCGAAAAGGA 57.270 29.630 26.07 26.07 42.15 3.36
3006 3317 8.634475 AAGATTGTTTCTTTTTCGAAAAGGAG 57.366 30.769 27.48 20.80 42.15 3.69
3007 3318 7.203218 AGATTGTTTCTTTTTCGAAAAGGAGG 58.797 34.615 27.48 17.21 35.76 4.30
3008 3319 5.907866 TGTTTCTTTTTCGAAAAGGAGGT 57.092 34.783 27.48 0.00 35.76 3.85
3009 3320 5.886992 TGTTTCTTTTTCGAAAAGGAGGTC 58.113 37.500 27.48 21.96 35.76 3.85
3010 3321 5.416326 TGTTTCTTTTTCGAAAAGGAGGTCA 59.584 36.000 27.48 23.57 35.76 4.02
3011 3322 5.494632 TTCTTTTTCGAAAAGGAGGTCAC 57.505 39.130 27.48 0.00 35.76 3.67
3012 3323 3.881089 TCTTTTTCGAAAAGGAGGTCACC 59.119 43.478 26.07 0.00 31.48 4.02
3013 3324 2.265589 TTTCGAAAAGGAGGTCACCC 57.734 50.000 8.44 0.00 0.00 4.61
3014 3325 0.399075 TTCGAAAAGGAGGTCACCCC 59.601 55.000 0.00 0.00 0.00 4.95
3015 3326 1.375523 CGAAAAGGAGGTCACCCCG 60.376 63.158 0.00 0.00 38.74 5.73
3016 3327 1.002502 GAAAAGGAGGTCACCCCGG 60.003 63.158 0.00 0.00 38.74 5.73
3017 3328 3.205851 AAAAGGAGGTCACCCCGGC 62.206 63.158 0.00 0.00 38.74 6.13
3026 3337 4.864334 CACCCCGGCCTCTGCATC 62.864 72.222 0.00 0.00 40.13 3.91
3028 3339 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
3029 3340 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
3030 3341 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
3031 3342 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
3032 3343 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
3033 3344 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
3034 3345 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
3043 3354 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
3044 3355 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
3045 3356 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
3046 3357 0.106708 AGAACGATGCATACGGCCAT 59.893 50.000 18.34 0.00 43.89 4.40
3047 3358 0.512952 GAACGATGCATACGGCCATC 59.487 55.000 18.34 0.00 43.89 3.51
3048 3359 0.106708 AACGATGCATACGGCCATCT 59.893 50.000 18.34 0.00 43.89 2.90
3049 3360 0.106708 ACGATGCATACGGCCATCTT 59.893 50.000 18.34 0.00 43.89 2.40
3050 3361 1.343142 ACGATGCATACGGCCATCTTA 59.657 47.619 18.34 0.00 43.89 2.10
3051 3362 2.028112 ACGATGCATACGGCCATCTTAT 60.028 45.455 18.34 0.00 43.89 1.73
3052 3363 3.002791 CGATGCATACGGCCATCTTATT 58.997 45.455 2.24 0.00 43.89 1.40
3053 3364 4.180817 CGATGCATACGGCCATCTTATTA 58.819 43.478 2.24 0.00 43.89 0.98
3054 3365 4.629634 CGATGCATACGGCCATCTTATTAA 59.370 41.667 2.24 0.00 43.89 1.40
3055 3366 5.121611 CGATGCATACGGCCATCTTATTAAA 59.878 40.000 2.24 0.00 43.89 1.52
3056 3367 6.348132 CGATGCATACGGCCATCTTATTAAAA 60.348 38.462 2.24 0.00 43.89 1.52
3057 3368 6.067263 TGCATACGGCCATCTTATTAAAAC 57.933 37.500 2.24 0.00 43.89 2.43
3058 3369 5.590663 TGCATACGGCCATCTTATTAAAACA 59.409 36.000 2.24 0.00 43.89 2.83
3059 3370 6.095580 TGCATACGGCCATCTTATTAAAACAA 59.904 34.615 2.24 0.00 43.89 2.83
3060 3371 6.975772 GCATACGGCCATCTTATTAAAACAAA 59.024 34.615 2.24 0.00 36.11 2.83
3061 3372 7.651704 GCATACGGCCATCTTATTAAAACAAAT 59.348 33.333 2.24 0.00 36.11 2.32
3087 3398 8.990163 AAATAAGGTTCTAACAAGGTCTCAAA 57.010 30.769 0.00 0.00 0.00 2.69
3088 3399 8.622948 AATAAGGTTCTAACAAGGTCTCAAAG 57.377 34.615 0.00 0.00 0.00 2.77
3089 3400 5.632034 AGGTTCTAACAAGGTCTCAAAGT 57.368 39.130 0.00 0.00 0.00 2.66
3090 3401 5.612351 AGGTTCTAACAAGGTCTCAAAGTC 58.388 41.667 0.00 0.00 0.00 3.01
3091 3402 5.367060 AGGTTCTAACAAGGTCTCAAAGTCT 59.633 40.000 0.00 0.00 0.00 3.24
3092 3403 5.697178 GGTTCTAACAAGGTCTCAAAGTCTC 59.303 44.000 0.00 0.00 0.00 3.36
3093 3404 5.470047 TCTAACAAGGTCTCAAAGTCTCC 57.530 43.478 0.00 0.00 0.00 3.71
3094 3405 4.899457 TCTAACAAGGTCTCAAAGTCTCCA 59.101 41.667 0.00 0.00 0.00 3.86
3095 3406 4.503714 AACAAGGTCTCAAAGTCTCCAA 57.496 40.909 0.00 0.00 0.00 3.53
3096 3407 3.809905 ACAAGGTCTCAAAGTCTCCAAC 58.190 45.455 0.00 0.00 0.00 3.77
3097 3408 3.456277 ACAAGGTCTCAAAGTCTCCAACT 59.544 43.478 0.00 0.00 41.10 3.16
3098 3409 3.760580 AGGTCTCAAAGTCTCCAACTG 57.239 47.619 0.00 0.00 38.58 3.16
3099 3410 3.309296 AGGTCTCAAAGTCTCCAACTGA 58.691 45.455 0.00 0.00 38.58 3.41
3100 3411 3.711704 AGGTCTCAAAGTCTCCAACTGAA 59.288 43.478 0.00 0.00 38.58 3.02
3101 3412 4.164221 AGGTCTCAAAGTCTCCAACTGAAA 59.836 41.667 0.00 0.00 38.58 2.69
3102 3413 4.881850 GGTCTCAAAGTCTCCAACTGAAAA 59.118 41.667 0.00 0.00 38.58 2.29
3103 3414 5.357032 GGTCTCAAAGTCTCCAACTGAAAAA 59.643 40.000 0.00 0.00 38.58 1.94
3142 3453 8.202745 CCAAATAGGCTAGAAAGACAAACTAG 57.797 38.462 0.00 0.00 37.32 2.57
3152 3463 7.454260 AGAAAGACAAACTAGCCAAATAAGG 57.546 36.000 0.00 0.00 0.00 2.69
3153 3464 6.434340 AGAAAGACAAACTAGCCAAATAAGGG 59.566 38.462 0.00 0.00 0.00 3.95
3154 3465 5.514500 AGACAAACTAGCCAAATAAGGGA 57.486 39.130 0.00 0.00 0.00 4.20
3155 3466 5.254115 AGACAAACTAGCCAAATAAGGGAC 58.746 41.667 0.00 0.00 0.00 4.46
3156 3467 4.007659 ACAAACTAGCCAAATAAGGGACG 58.992 43.478 0.00 0.00 0.00 4.79
3157 3468 2.327200 ACTAGCCAAATAAGGGACGC 57.673 50.000 0.00 0.00 0.00 5.19
3158 3469 1.134189 ACTAGCCAAATAAGGGACGCC 60.134 52.381 0.00 0.00 0.00 5.68
3159 3470 0.913205 TAGCCAAATAAGGGACGCCA 59.087 50.000 0.00 0.00 0.00 5.69
3160 3471 0.679960 AGCCAAATAAGGGACGCCAC 60.680 55.000 0.00 0.00 0.00 5.01
3161 3472 0.963355 GCCAAATAAGGGACGCCACA 60.963 55.000 0.00 0.00 0.00 4.17
3162 3473 1.540267 CCAAATAAGGGACGCCACAA 58.460 50.000 0.00 0.00 0.00 3.33
3163 3474 1.201414 CCAAATAAGGGACGCCACAAC 59.799 52.381 0.00 0.00 0.00 3.32
3164 3475 1.201414 CAAATAAGGGACGCCACAACC 59.799 52.381 0.00 0.00 0.00 3.77
3165 3476 0.675522 AATAAGGGACGCCACAACCG 60.676 55.000 0.00 0.00 0.00 4.44
3166 3477 2.530958 ATAAGGGACGCCACAACCGG 62.531 60.000 0.00 0.00 0.00 5.28
3174 3485 2.033448 CCACAACCGGCTGGCTAA 59.967 61.111 12.89 0.00 39.70 3.09
3175 3486 1.602323 CCACAACCGGCTGGCTAAA 60.602 57.895 12.89 0.00 39.70 1.85
3176 3487 1.586154 CCACAACCGGCTGGCTAAAG 61.586 60.000 12.89 0.00 39.70 1.85
3177 3488 0.605319 CACAACCGGCTGGCTAAAGA 60.605 55.000 12.89 0.00 39.70 2.52
3178 3489 0.321653 ACAACCGGCTGGCTAAAGAG 60.322 55.000 12.89 0.00 39.70 2.85
3179 3490 0.036388 CAACCGGCTGGCTAAAGAGA 60.036 55.000 12.89 0.00 39.70 3.10
3180 3491 0.250513 AACCGGCTGGCTAAAGAGAG 59.749 55.000 12.89 0.00 39.70 3.20
3181 3492 0.614979 ACCGGCTGGCTAAAGAGAGA 60.615 55.000 12.89 0.00 39.70 3.10
3182 3493 0.755686 CCGGCTGGCTAAAGAGAGAT 59.244 55.000 0.00 0.00 0.00 2.75
3183 3494 1.964223 CCGGCTGGCTAAAGAGAGATA 59.036 52.381 0.00 0.00 0.00 1.98
3184 3495 2.029470 CCGGCTGGCTAAAGAGAGATAG 60.029 54.545 0.00 0.00 0.00 2.08
3185 3496 2.029470 CGGCTGGCTAAAGAGAGATAGG 60.029 54.545 0.00 0.00 0.00 2.57
3186 3497 2.969262 GGCTGGCTAAAGAGAGATAGGT 59.031 50.000 0.00 0.00 0.00 3.08
3187 3498 4.153411 GGCTGGCTAAAGAGAGATAGGTA 58.847 47.826 0.00 0.00 0.00 3.08
3188 3499 4.589374 GGCTGGCTAAAGAGAGATAGGTAA 59.411 45.833 0.00 0.00 0.00 2.85
3189 3500 5.070580 GGCTGGCTAAAGAGAGATAGGTAAA 59.929 44.000 0.00 0.00 0.00 2.01
3190 3501 5.986741 GCTGGCTAAAGAGAGATAGGTAAAC 59.013 44.000 0.00 0.00 0.00 2.01
3191 3502 6.183360 GCTGGCTAAAGAGAGATAGGTAAACT 60.183 42.308 0.00 0.00 0.00 2.66
3192 3503 7.014422 GCTGGCTAAAGAGAGATAGGTAAACTA 59.986 40.741 0.00 0.00 35.80 2.24
3193 3504 8.834004 TGGCTAAAGAGAGATAGGTAAACTAA 57.166 34.615 0.00 0.00 34.79 2.24
3194 3505 9.435570 TGGCTAAAGAGAGATAGGTAAACTAAT 57.564 33.333 0.00 0.00 34.79 1.73
3198 3509 8.966069 AAAGAGAGATAGGTAAACTAATTGCC 57.034 34.615 0.00 0.00 43.60 4.52
3216 3527 9.254133 CTAATTGCCTATCCTATTACATGATCG 57.746 37.037 0.00 0.00 0.00 3.69
3217 3528 5.011090 TGCCTATCCTATTACATGATCGC 57.989 43.478 0.00 0.00 0.00 4.58
3218 3529 4.141937 TGCCTATCCTATTACATGATCGCC 60.142 45.833 0.00 0.00 0.00 5.54
3219 3530 4.141937 GCCTATCCTATTACATGATCGCCA 60.142 45.833 0.00 0.00 0.00 5.69
3220 3531 5.453903 GCCTATCCTATTACATGATCGCCAT 60.454 44.000 0.00 0.00 35.44 4.40
3221 3532 6.219473 CCTATCCTATTACATGATCGCCATC 58.781 44.000 0.00 0.00 31.94 3.51
3222 3533 4.471904 TCCTATTACATGATCGCCATCC 57.528 45.455 0.00 0.00 31.94 3.51
3223 3534 3.837731 TCCTATTACATGATCGCCATCCA 59.162 43.478 0.00 0.00 31.94 3.41
3224 3535 4.285775 TCCTATTACATGATCGCCATCCAA 59.714 41.667 0.00 0.00 31.94 3.53
3225 3536 5.003160 CCTATTACATGATCGCCATCCAAA 58.997 41.667 0.00 0.00 31.94 3.28
3226 3537 4.836125 ATTACATGATCGCCATCCAAAC 57.164 40.909 0.00 0.00 31.94 2.93
3227 3538 1.392589 ACATGATCGCCATCCAAACC 58.607 50.000 0.00 0.00 31.94 3.27
3228 3539 0.308684 CATGATCGCCATCCAAACCG 59.691 55.000 0.00 0.00 31.94 4.44
3229 3540 0.819259 ATGATCGCCATCCAAACCGG 60.819 55.000 0.00 0.00 0.00 5.28
3230 3541 1.451387 GATCGCCATCCAAACCGGT 60.451 57.895 0.00 0.00 35.57 5.28
3231 3542 1.001393 ATCGCCATCCAAACCGGTT 60.001 52.632 15.86 15.86 35.57 4.44
3232 3543 1.312371 ATCGCCATCCAAACCGGTTG 61.312 55.000 23.08 14.70 36.94 3.77
3233 3544 1.969064 CGCCATCCAAACCGGTTGA 60.969 57.895 23.08 15.50 39.87 3.18
3234 3545 1.519751 CGCCATCCAAACCGGTTGAA 61.520 55.000 23.08 9.90 39.87 2.69
3235 3546 0.243636 GCCATCCAAACCGGTTGAAG 59.756 55.000 23.08 13.88 39.87 3.02
3236 3547 1.904287 CCATCCAAACCGGTTGAAGA 58.096 50.000 23.08 17.89 39.87 2.87
3237 3548 2.446435 CCATCCAAACCGGTTGAAGAT 58.554 47.619 23.08 19.33 39.87 2.40
3238 3549 3.616219 CCATCCAAACCGGTTGAAGATA 58.384 45.455 23.08 4.03 39.87 1.98
3239 3550 4.207165 CCATCCAAACCGGTTGAAGATAT 58.793 43.478 23.08 6.33 39.87 1.63
3240 3551 4.275936 CCATCCAAACCGGTTGAAGATATC 59.724 45.833 23.08 0.00 39.87 1.63
3241 3552 3.881220 TCCAAACCGGTTGAAGATATCC 58.119 45.455 23.08 0.00 39.87 2.59
3242 3553 2.949644 CCAAACCGGTTGAAGATATCCC 59.050 50.000 23.08 0.00 39.87 3.85
3243 3554 2.612212 CAAACCGGTTGAAGATATCCCG 59.388 50.000 23.08 9.61 39.87 5.14
3244 3555 1.784358 ACCGGTTGAAGATATCCCGA 58.216 50.000 16.17 0.00 41.08 5.14
3245 3556 1.687123 ACCGGTTGAAGATATCCCGAG 59.313 52.381 16.17 10.10 41.08 4.63
3246 3557 1.605712 CCGGTTGAAGATATCCCGAGC 60.606 57.143 16.17 9.53 41.08 5.03
3247 3558 1.341531 CGGTTGAAGATATCCCGAGCT 59.658 52.381 10.76 0.00 41.08 4.09
3248 3559 2.557056 CGGTTGAAGATATCCCGAGCTA 59.443 50.000 10.76 0.00 41.08 3.32
3249 3560 3.612004 CGGTTGAAGATATCCCGAGCTAC 60.612 52.174 10.76 0.00 41.08 3.58
3250 3561 3.306156 GGTTGAAGATATCCCGAGCTACC 60.306 52.174 0.00 0.00 0.00 3.18
3251 3562 3.238788 TGAAGATATCCCGAGCTACCA 57.761 47.619 0.00 0.00 0.00 3.25
3252 3563 3.779444 TGAAGATATCCCGAGCTACCAT 58.221 45.455 0.00 0.00 0.00 3.55
3253 3564 3.764434 TGAAGATATCCCGAGCTACCATC 59.236 47.826 0.00 0.00 0.00 3.51
3254 3565 3.748645 AGATATCCCGAGCTACCATCT 57.251 47.619 0.00 0.00 0.00 2.90
3255 3566 3.626930 AGATATCCCGAGCTACCATCTC 58.373 50.000 0.00 0.00 0.00 2.75
3256 3567 2.217510 TATCCCGAGCTACCATCTCC 57.782 55.000 0.00 0.00 0.00 3.71
3257 3568 0.543174 ATCCCGAGCTACCATCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
3258 3569 1.457643 CCCGAGCTACCATCTCCCA 60.458 63.158 0.00 0.00 0.00 4.37
3259 3570 1.467678 CCCGAGCTACCATCTCCCAG 61.468 65.000 0.00 0.00 0.00 4.45
3260 3571 1.365633 CGAGCTACCATCTCCCAGC 59.634 63.158 0.00 0.00 0.00 4.85
3261 3572 1.365633 GAGCTACCATCTCCCAGCG 59.634 63.158 0.00 0.00 39.04 5.18
3262 3573 2.093537 GAGCTACCATCTCCCAGCGG 62.094 65.000 0.00 0.00 39.04 5.52
3263 3574 2.134287 GCTACCATCTCCCAGCGGA 61.134 63.158 0.00 0.00 36.45 5.54
3264 3575 1.476007 GCTACCATCTCCCAGCGGAT 61.476 60.000 0.00 0.00 37.60 4.18
3265 3576 1.924731 CTACCATCTCCCAGCGGATA 58.075 55.000 0.00 0.00 37.60 2.59
3266 3577 1.821753 CTACCATCTCCCAGCGGATAG 59.178 57.143 0.00 0.00 37.60 2.08
3267 3578 0.188587 ACCATCTCCCAGCGGATAGA 59.811 55.000 0.00 0.37 37.60 1.98
3268 3579 1.203237 ACCATCTCCCAGCGGATAGAT 60.203 52.381 0.00 2.45 37.60 1.98
3269 3580 1.480137 CCATCTCCCAGCGGATAGATC 59.520 57.143 8.40 0.00 37.60 2.75
3270 3581 1.480137 CATCTCCCAGCGGATAGATCC 59.520 57.143 0.00 0.00 43.65 3.36
3283 3594 5.948992 GGATAGATCCAGTAACCAAATGC 57.051 43.478 3.54 0.00 46.38 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067250 GCTAGAGGCGCTGAAGAGG 59.933 63.158 7.64 0.00 0.00 3.69
1 2 4.728058 GCTAGAGGCGCTGAAGAG 57.272 61.111 7.64 0.00 0.00 2.85
14 15 1.210155 GGTTGCCAAGTTGCGCTAG 59.790 57.895 9.73 0.00 0.00 3.42
77 78 2.112297 GGACGAACCAAGTGGGCA 59.888 61.111 1.69 0.00 42.05 5.36
78 79 3.047877 CGGACGAACCAAGTGGGC 61.048 66.667 1.69 0.00 42.05 5.36
81 82 1.284982 CTGAGCGGACGAACCAAGTG 61.285 60.000 0.00 0.00 38.90 3.16
82 83 1.006102 CTGAGCGGACGAACCAAGT 60.006 57.895 0.00 0.00 38.90 3.16
91 92 3.537206 AACTGTGGGCTGAGCGGAC 62.537 63.158 0.00 0.00 0.00 4.79
93 94 3.052082 CAACTGTGGGCTGAGCGG 61.052 66.667 0.00 0.00 0.00 5.52
94 95 2.031012 TCAACTGTGGGCTGAGCG 59.969 61.111 0.00 0.00 0.00 5.03
98 99 1.525995 AACGGTCAACTGTGGGCTG 60.526 57.895 0.00 0.00 35.26 4.85
103 104 0.937304 CAGGTCAACGGTCAACTGTG 59.063 55.000 0.00 0.00 35.26 3.66
114 115 5.886960 AAAATATCAGCAGTCAGGTCAAC 57.113 39.130 0.00 0.00 0.00 3.18
153 154 8.194769 ACATTTTTCAAATCCGTACACTTTTCT 58.805 29.630 0.00 0.00 0.00 2.52
154 155 8.347729 ACATTTTTCAAATCCGTACACTTTTC 57.652 30.769 0.00 0.00 0.00 2.29
155 156 8.710835 AACATTTTTCAAATCCGTACACTTTT 57.289 26.923 0.00 0.00 0.00 2.27
156 157 8.599774 CAAACATTTTTCAAATCCGTACACTTT 58.400 29.630 0.00 0.00 0.00 2.66
159 160 6.200097 AGCAAACATTTTTCAAATCCGTACAC 59.800 34.615 0.00 0.00 0.00 2.90
160 161 6.199908 CAGCAAACATTTTTCAAATCCGTACA 59.800 34.615 0.00 0.00 0.00 2.90
161 162 6.419413 TCAGCAAACATTTTTCAAATCCGTAC 59.581 34.615 0.00 0.00 0.00 3.67
163 164 5.355596 TCAGCAAACATTTTTCAAATCCGT 58.644 33.333 0.00 0.00 0.00 4.69
164 165 5.903764 TCAGCAAACATTTTTCAAATCCG 57.096 34.783 0.00 0.00 0.00 4.18
165 166 9.172820 GAAATTCAGCAAACATTTTTCAAATCC 57.827 29.630 0.00 0.00 0.00 3.01
348 444 9.132923 TGGGTTTTTGGTTTTCTTTTTAAAACT 57.867 25.926 0.00 0.00 44.87 2.66
349 445 9.745880 TTGGGTTTTTGGTTTTCTTTTTAAAAC 57.254 25.926 0.00 0.00 44.80 2.43
353 468 9.967346 CTTTTTGGGTTTTTGGTTTTCTTTTTA 57.033 25.926 0.00 0.00 0.00 1.52
359 474 7.441890 TTCTCTTTTTGGGTTTTTGGTTTTC 57.558 32.000 0.00 0.00 0.00 2.29
373 488 7.118971 TGTTTGGGTGTTCATTTTCTCTTTTTG 59.881 33.333 0.00 0.00 0.00 2.44
378 493 4.956075 AGTGTTTGGGTGTTCATTTTCTCT 59.044 37.500 0.00 0.00 0.00 3.10
380 495 6.976934 ATAGTGTTTGGGTGTTCATTTTCT 57.023 33.333 0.00 0.00 0.00 2.52
385 500 8.548877 ACTATCTAATAGTGTTTGGGTGTTCAT 58.451 33.333 0.00 0.00 44.07 2.57
386 501 7.913789 ACTATCTAATAGTGTTTGGGTGTTCA 58.086 34.615 0.00 0.00 44.07 3.18
406 521 8.189460 CGGGGCTATGTAAACTCTAATACTATC 58.811 40.741 0.00 0.00 0.00 2.08
407 522 7.123847 CCGGGGCTATGTAAACTCTAATACTAT 59.876 40.741 0.00 0.00 0.00 2.12
408 523 6.435277 CCGGGGCTATGTAAACTCTAATACTA 59.565 42.308 0.00 0.00 0.00 1.82
409 524 5.245526 CCGGGGCTATGTAAACTCTAATACT 59.754 44.000 0.00 0.00 0.00 2.12
410 525 5.476614 CCGGGGCTATGTAAACTCTAATAC 58.523 45.833 0.00 0.00 0.00 1.89
411 526 4.529377 CCCGGGGCTATGTAAACTCTAATA 59.471 45.833 14.71 0.00 0.00 0.98
413 528 2.701951 CCCGGGGCTATGTAAACTCTAA 59.298 50.000 14.71 0.00 0.00 2.10
414 529 2.322658 CCCGGGGCTATGTAAACTCTA 58.677 52.381 14.71 0.00 0.00 2.43
416 531 0.108019 CCCCGGGGCTATGTAAACTC 59.892 60.000 31.01 0.00 0.00 3.01
418 533 4.892002 CCCCGGGGCTATGTAAAC 57.108 61.111 31.01 0.00 0.00 2.01
428 543 4.426313 GTTTCTGGAGCCCCGGGG 62.426 72.222 37.09 37.09 39.38 5.73
429 544 4.426313 GGTTTCTGGAGCCCCGGG 62.426 72.222 15.80 15.80 39.38 5.73
430 545 1.559065 TTAGGTTTCTGGAGCCCCGG 61.559 60.000 0.00 0.00 40.31 5.73
431 546 0.392595 GTTAGGTTTCTGGAGCCCCG 60.393 60.000 0.00 0.00 34.29 5.73
432 547 0.696501 TGTTAGGTTTCTGGAGCCCC 59.303 55.000 0.00 0.00 0.00 5.80
433 548 2.026262 TCATGTTAGGTTTCTGGAGCCC 60.026 50.000 0.00 0.00 0.00 5.19
434 549 3.350219 TCATGTTAGGTTTCTGGAGCC 57.650 47.619 0.00 0.00 0.00 4.70
435 550 3.629398 CCATCATGTTAGGTTTCTGGAGC 59.371 47.826 0.00 0.00 0.00 4.70
437 552 3.620488 GCCATCATGTTAGGTTTCTGGA 58.380 45.455 0.00 0.00 0.00 3.86
438 553 2.689983 GGCCATCATGTTAGGTTTCTGG 59.310 50.000 0.00 0.00 0.00 3.86
439 554 3.379372 CAGGCCATCATGTTAGGTTTCTG 59.621 47.826 5.01 0.94 0.00 3.02
441 556 2.689983 CCAGGCCATCATGTTAGGTTTC 59.310 50.000 5.01 0.00 0.00 2.78
442 557 2.311542 TCCAGGCCATCATGTTAGGTTT 59.688 45.455 5.01 0.00 0.00 3.27
444 559 1.595311 TCCAGGCCATCATGTTAGGT 58.405 50.000 5.01 0.00 0.00 3.08
445 560 2.107031 TGATCCAGGCCATCATGTTAGG 59.893 50.000 5.01 0.00 0.00 2.69
446 561 3.497103 TGATCCAGGCCATCATGTTAG 57.503 47.619 5.01 0.00 0.00 2.34
447 562 3.459227 TCTTGATCCAGGCCATCATGTTA 59.541 43.478 5.01 0.00 30.26 2.41
484 643 4.644103 ACTTGGATGCTCACAATATTGC 57.356 40.909 15.48 1.94 0.00 3.56
485 644 5.290158 GCAAACTTGGATGCTCACAATATTG 59.710 40.000 14.01 14.01 39.46 1.90
486 645 5.413499 GCAAACTTGGATGCTCACAATATT 58.587 37.500 0.00 0.00 39.46 1.28
487 646 5.002464 GCAAACTTGGATGCTCACAATAT 57.998 39.130 0.00 0.00 39.46 1.28
488 647 4.439305 GCAAACTTGGATGCTCACAATA 57.561 40.909 0.00 0.00 39.46 1.90
489 648 3.308438 GCAAACTTGGATGCTCACAAT 57.692 42.857 0.00 0.00 39.46 2.71
528 698 4.302067 TGGGATCAGAGGCTATTCTTCTT 58.698 43.478 0.00 0.00 0.00 2.52
530 700 4.531732 AGATGGGATCAGAGGCTATTCTTC 59.468 45.833 0.00 0.00 0.00 2.87
538 708 3.410508 GATTCAAGATGGGATCAGAGGC 58.589 50.000 0.00 0.00 0.00 4.70
540 710 4.039004 AGACGATTCAAGATGGGATCAGAG 59.961 45.833 0.00 0.00 0.00 3.35
551 721 3.611766 CGAGGACAACAGACGATTCAAGA 60.612 47.826 0.00 0.00 0.00 3.02
555 725 2.631418 TCGAGGACAACAGACGATTC 57.369 50.000 0.00 0.00 0.00 2.52
560 730 1.272490 TGACCATCGAGGACAACAGAC 59.728 52.381 0.00 0.00 39.13 3.51
561 731 1.627864 TGACCATCGAGGACAACAGA 58.372 50.000 0.00 0.00 39.13 3.41
565 735 0.107703 GCCATGACCATCGAGGACAA 60.108 55.000 0.00 0.00 45.00 3.18
573 743 2.405892 GCATTAACGCCATGACCATC 57.594 50.000 0.00 0.00 0.00 3.51
584 754 2.116533 GGAACCCCGGGCATTAACG 61.117 63.158 17.73 1.06 0.00 3.18
595 765 0.326713 AGCCTAGAAGGAGGAACCCC 60.327 60.000 0.00 0.00 37.67 4.95
629 799 2.727607 GCTGTGATCGCGTTAAATTGCA 60.728 45.455 5.77 0.00 0.00 4.08
635 805 1.463056 CAAAGGCTGTGATCGCGTTAA 59.537 47.619 5.77 0.00 34.76 2.01
637 807 0.602638 TCAAAGGCTGTGATCGCGTT 60.603 50.000 2.41 0.00 37.10 4.84
640 810 1.329906 CATCTCAAAGGCTGTGATCGC 59.670 52.381 8.06 0.00 36.37 4.58
641 811 2.350804 CACATCTCAAAGGCTGTGATCG 59.649 50.000 8.06 2.36 41.11 3.69
646 816 1.980765 TCTCCACATCTCAAAGGCTGT 59.019 47.619 0.00 0.00 0.00 4.40
653 823 1.487976 GGCAGGATCTCCACATCTCAA 59.512 52.381 0.00 0.00 38.89 3.02
659 829 2.038813 TCCGGCAGGATCTCCACA 59.961 61.111 0.00 0.00 42.75 4.17
710 894 1.225148 GGCCGGCCCATGTAAACTA 59.775 57.895 36.64 0.00 0.00 2.24
739 923 2.125310 TTATGCGCACACCTCCCG 60.125 61.111 14.90 0.00 0.00 5.14
808 1002 2.222729 CGTCTGTTGTATAAACGGCAGC 60.223 50.000 0.00 0.00 32.98 5.25
825 1019 3.349006 CCTGCTGCAAACGCGTCT 61.349 61.111 14.44 0.00 0.00 4.18
826 1020 3.579626 GACCTGCTGCAAACGCGTC 62.580 63.158 14.44 0.00 0.00 5.19
868 1062 3.132160 TCGTGTGCGGTTTGAATAAAGA 58.868 40.909 0.00 0.00 38.89 2.52
869 1063 3.529634 TCGTGTGCGGTTTGAATAAAG 57.470 42.857 0.00 0.00 38.89 1.85
870 1064 4.491234 AATCGTGTGCGGTTTGAATAAA 57.509 36.364 0.00 0.00 38.42 1.40
1044 1243 4.864334 CGGGATGCCCTGCTGGTC 62.864 72.222 9.00 0.00 42.67 4.02
1903 2105 1.001764 CAGCTCCTGGTCATTGGCA 60.002 57.895 0.00 0.00 0.00 4.92
2001 2203 0.884514 CTCGGCTCACTTCTCTGTGA 59.115 55.000 0.00 0.00 43.72 3.58
2007 2209 4.443266 GGCGCTCGGCTCACTTCT 62.443 66.667 7.64 0.00 42.94 2.85
2159 2361 7.592533 CAGTTTCAGTTTCATTGAACCACATAG 59.407 37.037 0.00 0.00 34.50 2.23
2202 2404 9.577110 GAAGATTCTTGATATTGCACAATTTCA 57.423 29.630 3.03 11.06 37.12 2.69
2203 2405 9.028185 GGAAGATTCTTGATATTGCACAATTTC 57.972 33.333 3.03 4.22 28.93 2.17
2204 2406 8.755977 AGGAAGATTCTTGATATTGCACAATTT 58.244 29.630 3.03 0.00 30.61 1.82
2205 2407 8.195436 CAGGAAGATTCTTGATATTGCACAATT 58.805 33.333 3.03 0.00 36.49 2.32
2206 2408 7.558807 TCAGGAAGATTCTTGATATTGCACAAT 59.441 33.333 3.03 0.94 38.22 2.71
2207 2409 6.885918 TCAGGAAGATTCTTGATATTGCACAA 59.114 34.615 3.03 0.00 38.22 3.33
2208 2410 6.417258 TCAGGAAGATTCTTGATATTGCACA 58.583 36.000 3.03 0.00 38.22 4.57
2209 2411 6.932356 TCAGGAAGATTCTTGATATTGCAC 57.068 37.500 3.03 0.00 38.22 4.57
2210 2412 9.060347 GTATTCAGGAAGATTCTTGATATTGCA 57.940 33.333 3.03 0.00 41.93 4.08
2211 2413 9.060347 TGTATTCAGGAAGATTCTTGATATTGC 57.940 33.333 3.03 2.54 41.93 3.56
2216 2418 8.954350 CAAACTGTATTCAGGAAGATTCTTGAT 58.046 33.333 3.03 2.78 41.93 2.57
2217 2419 7.939039 ACAAACTGTATTCAGGAAGATTCTTGA 59.061 33.333 3.03 3.50 45.14 3.02
2218 2420 8.103948 ACAAACTGTATTCAGGAAGATTCTTG 57.896 34.615 3.03 0.00 45.14 3.02
2219 2421 8.697507 AACAAACTGTATTCAGGAAGATTCTT 57.302 30.769 4.24 0.00 45.14 2.52
2254 2456 5.769662 AGTTTCAGCTTCATTGAACCACATA 59.230 36.000 0.00 0.00 34.50 2.29
2255 2457 4.586001 AGTTTCAGCTTCATTGAACCACAT 59.414 37.500 0.00 0.00 34.50 3.21
2256 2458 3.953612 AGTTTCAGCTTCATTGAACCACA 59.046 39.130 0.00 0.00 34.50 4.17
2257 2459 4.293415 CAGTTTCAGCTTCATTGAACCAC 58.707 43.478 0.00 0.00 34.50 4.16
2258 2460 3.318839 CCAGTTTCAGCTTCATTGAACCA 59.681 43.478 0.00 0.00 34.50 3.67
2260 2462 4.836125 TCCAGTTTCAGCTTCATTGAAC 57.164 40.909 0.00 0.00 34.50 3.18
2262 2464 4.828939 ACATTCCAGTTTCAGCTTCATTGA 59.171 37.500 0.00 0.00 0.00 2.57
2263 2465 4.921515 CACATTCCAGTTTCAGCTTCATTG 59.078 41.667 0.00 0.00 0.00 2.82
2270 2472 2.991190 CAATGCACATTCCAGTTTCAGC 59.009 45.455 0.00 0.00 0.00 4.26
2284 2486 5.749620 TGCACAATTTCATTTTCAATGCAC 58.250 33.333 0.00 0.00 35.74 4.57
2285 2487 6.373186 TTGCACAATTTCATTTTCAATGCA 57.627 29.167 0.00 0.00 38.69 3.96
2320 2522 3.875134 GTCACCATAATACCCGACAAAGG 59.125 47.826 0.00 0.00 0.00 3.11
2330 2533 4.137116 TGCTCACCAGTCACCATAATAC 57.863 45.455 0.00 0.00 0.00 1.89
2396 2599 4.974368 TCAGTTTCGTTTGAACCACATT 57.026 36.364 0.00 0.00 32.71 2.71
2427 2630 7.579589 TTTGCATAATTTCATCTTCAAACCG 57.420 32.000 0.00 0.00 0.00 4.44
2430 2633 8.914654 CGAGTTTTGCATAATTTCATCTTCAAA 58.085 29.630 0.00 0.00 0.00 2.69
2550 2756 4.090057 GCTTCGGCCTCGTGTTGC 62.090 66.667 0.00 0.00 37.69 4.17
2616 2892 1.067565 CAGAGGTAGCGAGCACTTGAA 60.068 52.381 0.00 0.00 0.00 2.69
2618 2894 0.244994 ACAGAGGTAGCGAGCACTTG 59.755 55.000 0.00 0.00 0.00 3.16
2662 2938 2.693591 TCAGTTCACAGGAAGTCGTTCT 59.306 45.455 0.00 0.00 34.43 3.01
2698 3007 0.608130 AGTACAGGATTGCAGCGTGA 59.392 50.000 15.35 0.00 0.00 4.35
2746 3056 2.507484 CCCCGTCCGATATACAGTACA 58.493 52.381 0.00 0.00 0.00 2.90
2747 3057 1.200948 GCCCCGTCCGATATACAGTAC 59.799 57.143 0.00 0.00 0.00 2.73
2748 3058 1.202915 TGCCCCGTCCGATATACAGTA 60.203 52.381 0.00 0.00 0.00 2.74
2749 3059 0.468585 TGCCCCGTCCGATATACAGT 60.469 55.000 0.00 0.00 0.00 3.55
2750 3060 0.895530 ATGCCCCGTCCGATATACAG 59.104 55.000 0.00 0.00 0.00 2.74
2791 3102 1.541310 CCTACGTCTGGGCAGGTCAA 61.541 60.000 0.00 0.00 0.00 3.18
2860 3171 5.518847 GTGGAAGTAACAAAAACTTGGAAGC 59.481 40.000 0.00 0.00 37.31 3.86
2879 3190 7.201609 CGATAATGCTAGCAAAAAGTAGTGGAA 60.202 37.037 23.54 0.00 0.00 3.53
2892 3203 4.723248 CGATGTCTACGATAATGCTAGCA 58.277 43.478 21.85 21.85 0.00 3.49
2893 3204 3.544285 GCGATGTCTACGATAATGCTAGC 59.456 47.826 8.10 8.10 0.00 3.42
2939 3250 8.856153 TTAAAAAGGCAGTGTCTATGATAACA 57.144 30.769 0.00 0.00 0.00 2.41
2940 3251 9.722056 CATTAAAAAGGCAGTGTCTATGATAAC 57.278 33.333 0.00 0.00 0.00 1.89
2961 3272 9.639601 CAATCTTAGTGTCAGTAGTGTCATTAA 57.360 33.333 10.65 10.65 0.00 1.40
2964 3275 7.233389 ACAATCTTAGTGTCAGTAGTGTCAT 57.767 36.000 0.78 0.00 0.00 3.06
2968 3279 8.594881 AAGAAACAATCTTAGTGTCAGTAGTG 57.405 34.615 0.00 0.00 46.65 2.74
2982 3293 7.147897 ACCTCCTTTTCGAAAAAGAAACAATCT 60.148 33.333 22.67 0.00 39.53 2.40
2990 3301 3.881089 GGTGACCTCCTTTTCGAAAAAGA 59.119 43.478 22.67 20.39 0.00 2.52
2991 3302 4.224715 GGTGACCTCCTTTTCGAAAAAG 57.775 45.455 22.67 17.41 0.00 2.27
3009 3320 4.864334 GATGCAGAGGCCGGGGTG 62.864 72.222 2.18 0.00 40.13 4.61
3011 3322 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
3012 3323 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
3013 3324 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
3014 3325 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
3015 3326 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
3016 3327 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
3024 3335 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
3025 3336 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
3026 3337 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
3027 3338 0.106708 ATGGCCGTATGCATCGTTCT 59.893 50.000 0.19 0.00 43.89 3.01
3028 3339 0.512952 GATGGCCGTATGCATCGTTC 59.487 55.000 0.19 2.49 43.89 3.95
3029 3340 0.106708 AGATGGCCGTATGCATCGTT 59.893 50.000 0.19 0.00 43.89 3.85
3030 3341 0.106708 AAGATGGCCGTATGCATCGT 59.893 50.000 0.19 0.00 43.89 3.73
3031 3342 2.078849 TAAGATGGCCGTATGCATCG 57.921 50.000 0.19 7.03 43.89 3.84
3032 3343 6.494893 TTTAATAAGATGGCCGTATGCATC 57.505 37.500 0.19 0.00 43.89 3.91
3033 3344 6.264292 TGTTTTAATAAGATGGCCGTATGCAT 59.736 34.615 3.79 3.79 43.89 3.96
3034 3345 5.590663 TGTTTTAATAAGATGGCCGTATGCA 59.409 36.000 0.00 0.00 43.89 3.96
3035 3346 6.067263 TGTTTTAATAAGATGGCCGTATGC 57.933 37.500 0.00 0.00 40.16 3.14
3062 3373 8.990163 TTTGAGACCTTGTTAGAACCTTATTT 57.010 30.769 0.00 0.00 0.00 1.40
3063 3374 8.218488 ACTTTGAGACCTTGTTAGAACCTTATT 58.782 33.333 0.00 0.00 0.00 1.40
3064 3375 7.746703 ACTTTGAGACCTTGTTAGAACCTTAT 58.253 34.615 0.00 0.00 0.00 1.73
3065 3376 7.070821 AGACTTTGAGACCTTGTTAGAACCTTA 59.929 37.037 0.00 0.00 0.00 2.69
3066 3377 6.002653 ACTTTGAGACCTTGTTAGAACCTT 57.997 37.500 0.00 0.00 0.00 3.50
3067 3378 5.367060 AGACTTTGAGACCTTGTTAGAACCT 59.633 40.000 0.00 0.00 0.00 3.50
3068 3379 5.612351 AGACTTTGAGACCTTGTTAGAACC 58.388 41.667 0.00 0.00 0.00 3.62
3069 3380 5.697178 GGAGACTTTGAGACCTTGTTAGAAC 59.303 44.000 0.00 0.00 0.00 3.01
3070 3381 5.365605 TGGAGACTTTGAGACCTTGTTAGAA 59.634 40.000 0.00 0.00 0.00 2.10
3071 3382 4.899457 TGGAGACTTTGAGACCTTGTTAGA 59.101 41.667 0.00 0.00 0.00 2.10
3072 3383 5.215252 TGGAGACTTTGAGACCTTGTTAG 57.785 43.478 0.00 0.00 0.00 2.34
3073 3384 5.130477 AGTTGGAGACTTTGAGACCTTGTTA 59.870 40.000 0.00 0.00 33.92 2.41
3074 3385 4.080299 AGTTGGAGACTTTGAGACCTTGTT 60.080 41.667 0.00 0.00 33.92 2.83
3075 3386 3.456277 AGTTGGAGACTTTGAGACCTTGT 59.544 43.478 0.00 0.00 33.92 3.16
3076 3387 3.812053 CAGTTGGAGACTTTGAGACCTTG 59.188 47.826 0.00 0.00 36.10 3.61
3077 3388 3.711704 TCAGTTGGAGACTTTGAGACCTT 59.288 43.478 0.00 0.00 36.10 3.50
3078 3389 3.309296 TCAGTTGGAGACTTTGAGACCT 58.691 45.455 0.00 0.00 36.10 3.85
3079 3390 3.753294 TCAGTTGGAGACTTTGAGACC 57.247 47.619 0.00 0.00 36.10 3.85
3080 3391 6.436843 TTTTTCAGTTGGAGACTTTGAGAC 57.563 37.500 0.00 0.00 36.10 3.36
3117 3428 7.201652 GCTAGTTTGTCTTTCTAGCCTATTTGG 60.202 40.741 10.99 0.00 46.04 3.28
3118 3429 7.689299 GCTAGTTTGTCTTTCTAGCCTATTTG 58.311 38.462 10.99 0.00 46.04 2.32
3119 3430 7.851387 GCTAGTTTGTCTTTCTAGCCTATTT 57.149 36.000 10.99 0.00 46.04 1.40
3126 3437 8.669243 CCTTATTTGGCTAGTTTGTCTTTCTAG 58.331 37.037 0.00 0.00 35.60 2.43
3127 3438 7.610305 CCCTTATTTGGCTAGTTTGTCTTTCTA 59.390 37.037 0.00 0.00 0.00 2.10
3128 3439 6.434340 CCCTTATTTGGCTAGTTTGTCTTTCT 59.566 38.462 0.00 0.00 0.00 2.52
3129 3440 6.433093 TCCCTTATTTGGCTAGTTTGTCTTTC 59.567 38.462 0.00 0.00 0.00 2.62
3130 3441 6.208797 GTCCCTTATTTGGCTAGTTTGTCTTT 59.791 38.462 0.00 0.00 0.00 2.52
3131 3442 5.710567 GTCCCTTATTTGGCTAGTTTGTCTT 59.289 40.000 0.00 0.00 0.00 3.01
3132 3443 5.254115 GTCCCTTATTTGGCTAGTTTGTCT 58.746 41.667 0.00 0.00 0.00 3.41
3133 3444 4.094442 CGTCCCTTATTTGGCTAGTTTGTC 59.906 45.833 0.00 0.00 0.00 3.18
3134 3445 4.007659 CGTCCCTTATTTGGCTAGTTTGT 58.992 43.478 0.00 0.00 0.00 2.83
3135 3446 3.181500 GCGTCCCTTATTTGGCTAGTTTG 60.181 47.826 0.00 0.00 0.00 2.93
3136 3447 3.014623 GCGTCCCTTATTTGGCTAGTTT 58.985 45.455 0.00 0.00 0.00 2.66
3137 3448 2.640184 GCGTCCCTTATTTGGCTAGTT 58.360 47.619 0.00 0.00 0.00 2.24
3138 3449 1.134189 GGCGTCCCTTATTTGGCTAGT 60.134 52.381 0.00 0.00 0.00 2.57
3139 3450 1.134220 TGGCGTCCCTTATTTGGCTAG 60.134 52.381 0.00 0.00 0.00 3.42
3140 3451 0.913205 TGGCGTCCCTTATTTGGCTA 59.087 50.000 0.00 0.00 0.00 3.93
3141 3452 0.679960 GTGGCGTCCCTTATTTGGCT 60.680 55.000 0.00 0.00 0.00 4.75
3142 3453 0.963355 TGTGGCGTCCCTTATTTGGC 60.963 55.000 0.00 0.00 0.00 4.52
3143 3454 1.201414 GTTGTGGCGTCCCTTATTTGG 59.799 52.381 0.00 0.00 0.00 3.28
3144 3455 1.201414 GGTTGTGGCGTCCCTTATTTG 59.799 52.381 0.00 0.00 0.00 2.32
3145 3456 1.541379 GGTTGTGGCGTCCCTTATTT 58.459 50.000 0.00 0.00 0.00 1.40
3146 3457 0.675522 CGGTTGTGGCGTCCCTTATT 60.676 55.000 0.00 0.00 0.00 1.40
3147 3458 1.078708 CGGTTGTGGCGTCCCTTAT 60.079 57.895 0.00 0.00 0.00 1.73
3148 3459 2.344500 CGGTTGTGGCGTCCCTTA 59.656 61.111 0.00 0.00 0.00 2.69
3149 3460 4.636435 CCGGTTGTGGCGTCCCTT 62.636 66.667 0.00 0.00 0.00 3.95
3157 3468 1.586154 CTTTAGCCAGCCGGTTGTGG 61.586 60.000 17.69 15.43 36.85 4.17
3158 3469 0.605319 TCTTTAGCCAGCCGGTTGTG 60.605 55.000 17.69 9.73 33.28 3.33
3159 3470 0.321653 CTCTTTAGCCAGCCGGTTGT 60.322 55.000 17.69 1.85 33.28 3.32
3160 3471 0.036388 TCTCTTTAGCCAGCCGGTTG 60.036 55.000 11.98 11.98 33.28 3.77
3161 3472 0.250513 CTCTCTTTAGCCAGCCGGTT 59.749 55.000 1.90 0.00 33.28 4.44
3162 3473 0.614979 TCTCTCTTTAGCCAGCCGGT 60.615 55.000 1.90 0.00 33.28 5.28
3163 3474 0.755686 ATCTCTCTTTAGCCAGCCGG 59.244 55.000 0.00 0.00 0.00 6.13
3164 3475 2.029470 CCTATCTCTCTTTAGCCAGCCG 60.029 54.545 0.00 0.00 0.00 5.52
3165 3476 2.969262 ACCTATCTCTCTTTAGCCAGCC 59.031 50.000 0.00 0.00 0.00 4.85
3166 3477 5.793030 TTACCTATCTCTCTTTAGCCAGC 57.207 43.478 0.00 0.00 0.00 4.85
3167 3478 7.354751 AGTTTACCTATCTCTCTTTAGCCAG 57.645 40.000 0.00 0.00 0.00 4.85
3168 3479 8.834004 TTAGTTTACCTATCTCTCTTTAGCCA 57.166 34.615 0.00 0.00 0.00 4.75
3173 3484 8.773216 AGGCAATTAGTTTACCTATCTCTCTTT 58.227 33.333 0.00 0.00 0.00 2.52
3174 3485 8.325477 AGGCAATTAGTTTACCTATCTCTCTT 57.675 34.615 0.00 0.00 0.00 2.85
3175 3486 7.922699 AGGCAATTAGTTTACCTATCTCTCT 57.077 36.000 0.00 0.00 0.00 3.10
3190 3501 9.254133 CGATCATGTAATAGGATAGGCAATTAG 57.746 37.037 0.00 0.00 28.22 1.73
3191 3502 7.710907 GCGATCATGTAATAGGATAGGCAATTA 59.289 37.037 0.00 0.00 32.55 1.40
3192 3503 6.540189 GCGATCATGTAATAGGATAGGCAATT 59.460 38.462 0.00 0.00 32.55 2.32
3193 3504 6.051717 GCGATCATGTAATAGGATAGGCAAT 58.948 40.000 0.00 0.00 32.55 3.56
3194 3505 5.419542 GCGATCATGTAATAGGATAGGCAA 58.580 41.667 0.00 0.00 32.55 4.52
3195 3506 4.141937 GGCGATCATGTAATAGGATAGGCA 60.142 45.833 0.00 0.00 43.63 4.75
3196 3507 4.141937 TGGCGATCATGTAATAGGATAGGC 60.142 45.833 0.00 0.00 44.14 3.93
3197 3508 5.598416 TGGCGATCATGTAATAGGATAGG 57.402 43.478 0.00 0.00 28.22 2.57
3198 3509 6.183360 TGGATGGCGATCATGTAATAGGATAG 60.183 42.308 11.07 0.00 35.97 2.08
3199 3510 5.660864 TGGATGGCGATCATGTAATAGGATA 59.339 40.000 11.07 0.00 35.97 2.59
3200 3511 4.471025 TGGATGGCGATCATGTAATAGGAT 59.529 41.667 11.07 0.00 35.97 3.24
3201 3512 3.837731 TGGATGGCGATCATGTAATAGGA 59.162 43.478 11.07 0.00 35.97 2.94
3202 3513 4.206477 TGGATGGCGATCATGTAATAGG 57.794 45.455 11.07 0.00 35.97 2.57
3203 3514 5.106555 GGTTTGGATGGCGATCATGTAATAG 60.107 44.000 11.07 0.00 35.97 1.73
3204 3515 4.759693 GGTTTGGATGGCGATCATGTAATA 59.240 41.667 11.07 0.00 35.97 0.98
3205 3516 3.569701 GGTTTGGATGGCGATCATGTAAT 59.430 43.478 11.07 0.00 35.97 1.89
3206 3517 2.948979 GGTTTGGATGGCGATCATGTAA 59.051 45.455 11.07 0.00 35.97 2.41
3207 3518 2.571212 GGTTTGGATGGCGATCATGTA 58.429 47.619 11.07 0.00 35.97 2.29
3208 3519 1.392589 GGTTTGGATGGCGATCATGT 58.607 50.000 11.07 0.00 35.97 3.21
3209 3520 0.308684 CGGTTTGGATGGCGATCATG 59.691 55.000 11.07 0.00 35.97 3.07
3210 3521 0.819259 CCGGTTTGGATGGCGATCAT 60.819 55.000 11.07 0.00 42.00 2.45
3211 3522 1.451207 CCGGTTTGGATGGCGATCA 60.451 57.895 11.07 0.00 42.00 2.92
3212 3523 1.029947 AACCGGTTTGGATGGCGATC 61.030 55.000 15.86 0.00 42.00 3.69
3213 3524 1.001393 AACCGGTTTGGATGGCGAT 60.001 52.632 15.86 0.00 42.00 4.58
3214 3525 1.969064 CAACCGGTTTGGATGGCGA 60.969 57.895 19.55 0.00 42.00 5.54
3215 3526 1.519751 TTCAACCGGTTTGGATGGCG 61.520 55.000 19.55 3.62 40.78 5.69
3216 3527 0.243636 CTTCAACCGGTTTGGATGGC 59.756 55.000 19.55 0.00 40.78 4.40
3217 3528 1.904287 TCTTCAACCGGTTTGGATGG 58.096 50.000 19.55 5.30 40.78 3.51
3218 3529 4.275936 GGATATCTTCAACCGGTTTGGATG 59.724 45.833 19.55 14.79 41.73 3.51
3219 3530 4.461198 GGATATCTTCAACCGGTTTGGAT 58.539 43.478 19.55 21.16 42.00 3.41
3220 3531 3.371166 GGGATATCTTCAACCGGTTTGGA 60.371 47.826 19.55 15.86 42.00 3.53
3221 3532 2.949644 GGGATATCTTCAACCGGTTTGG 59.050 50.000 19.55 7.84 46.41 3.28
3222 3533 2.612212 CGGGATATCTTCAACCGGTTTG 59.388 50.000 19.55 13.53 40.79 2.93
3223 3534 2.502538 TCGGGATATCTTCAACCGGTTT 59.497 45.455 19.55 5.23 44.36 3.27
3224 3535 2.102588 CTCGGGATATCTTCAACCGGTT 59.897 50.000 15.86 15.86 44.36 4.44
3225 3536 1.687123 CTCGGGATATCTTCAACCGGT 59.313 52.381 0.00 0.00 44.36 5.28
3226 3537 1.605712 GCTCGGGATATCTTCAACCGG 60.606 57.143 14.77 0.00 44.36 5.28
3227 3538 1.341531 AGCTCGGGATATCTTCAACCG 59.658 52.381 10.16 10.16 45.52 4.44
3228 3539 3.306156 GGTAGCTCGGGATATCTTCAACC 60.306 52.174 2.05 0.00 0.00 3.77
3229 3540 3.321111 TGGTAGCTCGGGATATCTTCAAC 59.679 47.826 2.05 0.00 0.00 3.18
3230 3541 3.572642 TGGTAGCTCGGGATATCTTCAA 58.427 45.455 2.05 0.00 0.00 2.69
3231 3542 3.238788 TGGTAGCTCGGGATATCTTCA 57.761 47.619 2.05 0.00 0.00 3.02
3232 3543 4.020543 AGATGGTAGCTCGGGATATCTTC 58.979 47.826 2.05 0.00 0.00 2.87
3233 3544 4.020543 GAGATGGTAGCTCGGGATATCTT 58.979 47.826 2.05 0.00 0.00 2.40
3234 3545 3.626222 GGAGATGGTAGCTCGGGATATCT 60.626 52.174 2.05 0.00 33.19 1.98
3235 3546 2.691011 GGAGATGGTAGCTCGGGATATC 59.309 54.545 0.00 0.00 33.19 1.63
3236 3547 2.624557 GGGAGATGGTAGCTCGGGATAT 60.625 54.545 0.00 0.00 33.19 1.63
3237 3548 1.272536 GGGAGATGGTAGCTCGGGATA 60.273 57.143 0.00 0.00 33.19 2.59
3238 3549 0.543174 GGGAGATGGTAGCTCGGGAT 60.543 60.000 0.00 0.00 33.19 3.85
3239 3550 1.152525 GGGAGATGGTAGCTCGGGA 60.153 63.158 0.00 0.00 33.19 5.14
3240 3551 1.457643 TGGGAGATGGTAGCTCGGG 60.458 63.158 0.00 0.00 33.19 5.14
3241 3552 2.045280 CTGGGAGATGGTAGCTCGG 58.955 63.158 0.00 0.00 33.19 4.63
3242 3553 1.365633 GCTGGGAGATGGTAGCTCG 59.634 63.158 0.00 0.00 33.19 5.03
3243 3554 1.365633 CGCTGGGAGATGGTAGCTC 59.634 63.158 0.00 0.00 34.13 4.09
3244 3555 2.136878 CCGCTGGGAGATGGTAGCT 61.137 63.158 0.00 0.00 34.13 3.32
3245 3556 2.134287 TCCGCTGGGAGATGGTAGC 61.134 63.158 0.00 0.00 37.43 3.58
3246 3557 4.277552 TCCGCTGGGAGATGGTAG 57.722 61.111 0.00 0.00 37.43 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.