Multiple sequence alignment - TraesCS6A01G120100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G120100 chr6A 100.000 6061 0 0 1 6061 91888094 91882034 0.000000e+00 11193.0
1 TraesCS6A01G120100 chr6A 78.288 1110 227 14 2142 3244 15654924 15653822 0.000000e+00 702.0
2 TraesCS6A01G120100 chr6A 84.327 453 66 4 5608 6059 91896783 91896335 7.210000e-119 438.0
3 TraesCS6A01G120100 chr6A 82.933 416 69 2 1022 1437 91882463 91882050 2.060000e-99 374.0
4 TraesCS6A01G120100 chr6A 82.933 416 69 2 5632 6045 91887073 91886658 2.060000e-99 374.0
5 TraesCS6A01G120100 chr6A 79.231 390 71 8 5643 6024 587698581 587698194 4.660000e-66 263.0
6 TraesCS6A01G120100 chr6A 77.892 389 86 0 5644 6032 15656111 15655723 6.070000e-60 243.0
7 TraesCS6A01G120100 chr6A 76.842 380 88 0 5653 6032 86316863 86316484 1.320000e-51 215.0
8 TraesCS6A01G120100 chr6A 94.574 129 6 1 1971 2099 14133965 14134092 1.330000e-46 198.0
9 TraesCS6A01G120100 chr6D 96.218 2221 55 9 2076 4267 75873095 75870875 0.000000e+00 3609.0
10 TraesCS6A01G120100 chr6D 91.878 1379 77 17 609 1972 75874452 75873094 0.000000e+00 1893.0
11 TraesCS6A01G120100 chr6D 90.977 1330 64 34 4784 6060 75870545 75869219 0.000000e+00 1740.0
12 TraesCS6A01G120100 chr6D 76.911 1230 243 33 2141 3349 75756568 75755359 0.000000e+00 660.0
13 TraesCS6A01G120100 chr6D 90.062 483 42 4 5554 6030 75766882 75766400 6.670000e-174 621.0
14 TraesCS6A01G120100 chr6D 91.457 398 24 5 4390 4781 75870871 75870478 6.910000e-149 538.0
15 TraesCS6A01G120100 chr6D 86.058 416 57 1 5611 6026 75887082 75886668 4.310000e-121 446.0
16 TraesCS6A01G120100 chr6D 83.894 416 65 2 1022 1437 75869647 75869234 4.400000e-106 396.0
17 TraesCS6A01G120100 chr6D 83.333 258 43 0 5643 5900 438839536 438839279 7.850000e-59 239.0
18 TraesCS6A01G120100 chr6D 76.733 404 94 0 5629 6032 68630161 68630564 6.110000e-55 226.0
19 TraesCS6A01G120100 chr6B 96.210 2111 61 7 2076 4171 149471605 149469499 0.000000e+00 3437.0
20 TraesCS6A01G120100 chr6B 93.478 1426 73 12 554 1972 149473016 149471604 0.000000e+00 2100.0
21 TraesCS6A01G120100 chr6B 88.473 1310 94 28 4800 6059 149469065 149467763 0.000000e+00 1530.0
22 TraesCS6A01G120100 chr6B 85.316 790 44 24 5287 6030 149434150 149433387 0.000000e+00 750.0
23 TraesCS6A01G120100 chr6B 78.122 1097 220 17 2137 3223 26487011 26485925 0.000000e+00 678.0
24 TraesCS6A01G120100 chr6B 87.296 614 44 18 3683 4267 149440871 149440263 0.000000e+00 671.0
25 TraesCS6A01G120100 chr6B 91.096 438 21 7 4839 5273 149434773 149434351 1.460000e-160 577.0
26 TraesCS6A01G120100 chr6B 80.677 502 86 9 5552 6045 149472638 149472140 4.430000e-101 379.0
27 TraesCS6A01G120100 chr6B 84.906 265 40 0 1156 1420 149433651 149433387 1.000000e-67 268.0
28 TraesCS6A01G120100 chr6B 90.909 132 8 2 4473 4604 149437615 149437488 2.250000e-39 174.0
29 TraesCS6A01G120100 chr6B 91.753 97 8 0 4660 4756 149434864 149434768 1.060000e-27 135.0
30 TraesCS6A01G120100 chr6B 91.089 101 8 1 4355 4455 149440261 149440162 1.060000e-27 135.0
31 TraesCS6A01G120100 chr6B 91.803 61 5 0 4364 4424 149469325 149469265 1.080000e-12 86.1
32 TraesCS6A01G120100 chr1A 93.023 559 34 3 1 556 562470344 562469788 0.000000e+00 811.0
33 TraesCS6A01G120100 chr1A 93.141 554 34 2 1 551 511249375 511249927 0.000000e+00 809.0
34 TraesCS6A01G120100 chr1A 92.819 557 36 4 1 556 572570106 572570659 0.000000e+00 804.0
35 TraesCS6A01G120100 chr1A 92.652 558 35 4 1 554 23314756 23314201 0.000000e+00 798.0
36 TraesCS6A01G120100 chr1A 92.639 557 36 3 1 554 566300096 566300650 0.000000e+00 797.0
37 TraesCS6A01G120100 chr1A 74.312 1308 279 42 2154 3431 580630517 580629237 9.070000e-138 501.0
38 TraesCS6A01G120100 chr1A 75.959 391 90 3 5644 6032 586411724 586411336 1.330000e-46 198.0
39 TraesCS6A01G120100 chr5A 93.116 552 35 3 1 552 448634648 448634100 0.000000e+00 806.0
40 TraesCS6A01G120100 chr5A 96.610 118 4 0 1969 2086 664849492 664849609 4.790000e-46 196.0
41 TraesCS6A01G120100 chr3A 92.973 555 35 2 1 552 699514639 699515192 0.000000e+00 806.0
42 TraesCS6A01G120100 chr3A 99.091 110 1 0 1971 2080 336604535 336604644 1.330000e-46 198.0
43 TraesCS6A01G120100 chr2A 91.608 572 41 5 1 567 637226192 637226761 0.000000e+00 784.0
44 TraesCS6A01G120100 chr4A 92.101 557 40 3 1 554 640919602 640920157 0.000000e+00 782.0
45 TraesCS6A01G120100 chr4A 79.353 804 147 18 2138 2931 729746135 729746929 1.150000e-151 547.0
46 TraesCS6A01G120100 chr4A 77.455 825 169 15 2137 2952 729706903 729707719 1.530000e-130 477.0
47 TraesCS6A01G120100 chr4A 94.400 125 5 2 1961 2084 537434426 537434303 2.230000e-44 191.0
48 TraesCS6A01G120100 chr7D 80.079 758 133 17 2138 2887 10038712 10039459 1.150000e-151 547.0
49 TraesCS6A01G120100 chr7D 79.003 762 140 18 2138 2890 10479308 10478558 2.520000e-138 503.0
50 TraesCS6A01G120100 chr5D 85.849 212 24 6 4347 4555 356846079 356845871 2.840000e-53 220.0
51 TraesCS6A01G120100 chr5D 93.701 127 8 0 1953 2079 560426208 560426082 2.230000e-44 191.0
52 TraesCS6A01G120100 chr7A 92.143 140 7 4 1971 2107 30135293 30135431 1.720000e-45 195.0
53 TraesCS6A01G120100 chr7A 93.600 125 5 3 1966 2088 645027226 645027103 3.730000e-42 183.0
54 TraesCS6A01G120100 chr5B 94.355 124 7 0 1971 2094 278886986 278886863 2.230000e-44 191.0
55 TraesCS6A01G120100 chr2D 95.082 122 4 2 1967 2086 87030972 87031093 2.230000e-44 191.0
56 TraesCS6A01G120100 chr1B 77.679 112 22 3 3870 3981 673861752 673861644 1.410000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G120100 chr6A 91882034 91888094 6060 True 11193.000000 11193 100.000000 1 6061 1 chr6A.!!$R2 6060
1 TraesCS6A01G120100 chr6A 15653822 15656111 2289 True 472.500000 702 78.090000 2142 6032 2 chr6A.!!$R7 3890
2 TraesCS6A01G120100 chr6D 75869219 75874452 5233 True 1635.200000 3609 90.884800 609 6060 5 chr6D.!!$R5 5451
3 TraesCS6A01G120100 chr6D 75755359 75756568 1209 True 660.000000 660 76.911000 2141 3349 1 chr6D.!!$R1 1208
4 TraesCS6A01G120100 chr6B 149467763 149473016 5253 True 1506.420000 3437 90.128200 554 6059 5 chr6B.!!$R3 5505
5 TraesCS6A01G120100 chr6B 26485925 26487011 1086 True 678.000000 678 78.122000 2137 3223 1 chr6B.!!$R1 1086
6 TraesCS6A01G120100 chr6B 149433387 149440871 7484 True 387.142857 750 88.909286 1156 6030 7 chr6B.!!$R2 4874
7 TraesCS6A01G120100 chr1A 562469788 562470344 556 True 811.000000 811 93.023000 1 556 1 chr1A.!!$R2 555
8 TraesCS6A01G120100 chr1A 511249375 511249927 552 False 809.000000 809 93.141000 1 551 1 chr1A.!!$F1 550
9 TraesCS6A01G120100 chr1A 572570106 572570659 553 False 804.000000 804 92.819000 1 556 1 chr1A.!!$F3 555
10 TraesCS6A01G120100 chr1A 23314201 23314756 555 True 798.000000 798 92.652000 1 554 1 chr1A.!!$R1 553
11 TraesCS6A01G120100 chr1A 566300096 566300650 554 False 797.000000 797 92.639000 1 554 1 chr1A.!!$F2 553
12 TraesCS6A01G120100 chr1A 580629237 580630517 1280 True 501.000000 501 74.312000 2154 3431 1 chr1A.!!$R3 1277
13 TraesCS6A01G120100 chr5A 448634100 448634648 548 True 806.000000 806 93.116000 1 552 1 chr5A.!!$R1 551
14 TraesCS6A01G120100 chr3A 699514639 699515192 553 False 806.000000 806 92.973000 1 552 1 chr3A.!!$F2 551
15 TraesCS6A01G120100 chr2A 637226192 637226761 569 False 784.000000 784 91.608000 1 567 1 chr2A.!!$F1 566
16 TraesCS6A01G120100 chr4A 640919602 640920157 555 False 782.000000 782 92.101000 1 554 1 chr4A.!!$F1 553
17 TraesCS6A01G120100 chr4A 729746135 729746929 794 False 547.000000 547 79.353000 2138 2931 1 chr4A.!!$F3 793
18 TraesCS6A01G120100 chr4A 729706903 729707719 816 False 477.000000 477 77.455000 2137 2952 1 chr4A.!!$F2 815
19 TraesCS6A01G120100 chr7D 10038712 10039459 747 False 547.000000 547 80.079000 2138 2887 1 chr7D.!!$F1 749
20 TraesCS6A01G120100 chr7D 10478558 10479308 750 True 503.000000 503 79.003000 2138 2890 1 chr7D.!!$R1 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
915 937 0.031721 GCCGTATTCTACACCCCTCG 59.968 60.000 0.00 0.0 0.00 4.63 F
916 938 0.031721 CCGTATTCTACACCCCTCGC 59.968 60.000 0.00 0.0 0.00 5.03 F
1722 1744 0.523519 GTGGCCTGCAACTAAAGCTC 59.476 55.000 3.32 0.0 0.00 4.09 F
1998 2021 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.0 35.93 5.19 F
3484 3528 1.000396 GCTGAAGGCAGGGGTTGAT 60.000 57.895 0.00 0.0 42.53 2.57 F
4817 10135 0.112412 CAGGTAGTGGTTTTGGGGCT 59.888 55.000 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 2005 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.0 35.73 4.55 R
2896 2922 1.333308 TCACGTTGTGCCATGTCTTTG 59.667 47.619 0.00 0.0 32.98 2.77 R
3484 3528 0.329261 CAATGGAGGAGACCAAGGCA 59.671 55.000 0.00 0.0 43.47 4.75 R
3929 3981 0.541863 GGTATAGCACTGCCACCACT 59.458 55.000 10.71 0.0 0.00 4.00 R
4940 10258 0.033796 CAATGGTCCATGCTCCCTGT 60.034 55.000 4.74 0.0 0.00 4.00 R
5747 11325 0.179073 GGAGAGCTTTCATGGCGCTA 60.179 55.000 7.64 0.0 39.71 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.164221 ACCGACATATCTTTTCTGATGGGT 59.836 41.667 0.00 0.00 0.00 4.51
439 444 2.437180 CGCATTCTGAGGCCAGCA 60.437 61.111 5.01 0.91 40.20 4.41
468 473 0.966370 GTGACTGGGAGCTAGGTCGT 60.966 60.000 15.43 8.14 0.00 4.34
476 481 0.683504 GAGCTAGGTCGTCCCCAAGA 60.684 60.000 6.12 0.00 0.00 3.02
505 510 2.282887 GTCGGCACACCCCCAAAT 60.283 61.111 0.00 0.00 0.00 2.32
525 530 0.667792 CGCTCTATTTAGGCGCCCTC 60.668 60.000 26.15 0.00 42.28 4.30
569 574 2.287915 CCCTTAATCACGGAGCATTTCG 59.712 50.000 0.00 0.00 0.00 3.46
573 578 1.369625 ATCACGGAGCATTTCGTTCC 58.630 50.000 0.00 0.00 41.48 3.62
579 587 2.427506 GGAGCATTTCGTTCCTTCAGT 58.572 47.619 0.00 0.00 41.66 3.41
582 590 2.151202 GCATTTCGTTCCTTCAGTCCA 58.849 47.619 0.00 0.00 0.00 4.02
597 605 2.951642 CAGTCCACAAATCACAACCTGT 59.048 45.455 0.00 0.00 0.00 4.00
605 613 6.018832 CCACAAATCACAACCTGTCATTTTTC 60.019 38.462 0.00 0.00 0.00 2.29
660 668 0.323360 CCTTCTCCCCCAAATCGCAA 60.323 55.000 0.00 0.00 0.00 4.85
687 695 2.017623 GCTGCTCCGGTACTACTCTCA 61.018 57.143 0.00 0.00 0.00 3.27
831 852 4.767255 CCAGCCACCGTCTCCAGC 62.767 72.222 0.00 0.00 0.00 4.85
915 937 0.031721 GCCGTATTCTACACCCCTCG 59.968 60.000 0.00 0.00 0.00 4.63
916 938 0.031721 CCGTATTCTACACCCCTCGC 59.968 60.000 0.00 0.00 0.00 5.03
963 985 1.340248 AGTTGCAGTACACGTAGCTGT 59.660 47.619 0.00 0.00 33.18 4.40
1254 1276 5.201713 ACGACATGGAGAATTGTATCGAT 57.798 39.130 2.16 2.16 0.00 3.59
1257 1279 5.866092 CGACATGGAGAATTGTATCGATGAT 59.134 40.000 8.54 0.00 35.46 2.45
1272 1294 2.722629 CGATGATTTCATGCGCCAATTC 59.277 45.455 4.18 2.06 36.57 2.17
1275 1297 1.065401 GATTTCATGCGCCAATTCGGA 59.935 47.619 4.18 0.00 36.56 4.55
1444 1466 5.670485 ACGATTGTGTTGATTATAGCTCCA 58.330 37.500 0.00 0.00 0.00 3.86
1445 1467 5.523916 ACGATTGTGTTGATTATAGCTCCAC 59.476 40.000 0.00 0.00 0.00 4.02
1722 1744 0.523519 GTGGCCTGCAACTAAAGCTC 59.476 55.000 3.32 0.00 0.00 4.09
1748 1770 3.510459 TGGAGGAGTCTTCTCACATTCA 58.490 45.455 10.46 0.00 42.05 2.57
1764 1786 4.637091 CACATTCATGAGGTGCAAGACATA 59.363 41.667 14.29 0.00 0.00 2.29
1774 1796 2.029244 GTGCAAGACATAATCGACCGTG 59.971 50.000 0.00 0.00 0.00 4.94
1790 1812 4.438880 CGACCGTGTTAGAGAACATCTCAT 60.439 45.833 9.82 0.00 46.98 2.90
1864 1887 6.204882 GGCTAGCTAGTTTCTGAAGTTGAAAA 59.795 38.462 21.62 0.00 35.54 2.29
1912 1935 5.180492 TGTTTTAATGACGCGGAGATTTCTT 59.820 36.000 12.47 0.00 0.00 2.52
1921 1944 3.307242 CGCGGAGATTTCTTTTAGGACAG 59.693 47.826 0.00 0.00 0.00 3.51
1955 1978 6.656632 TGTGTTACTTATTGGCCATGAAAA 57.343 33.333 6.09 0.00 0.00 2.29
1970 1993 6.335777 GCCATGAAAAGTTCAGCTCATAAAT 58.664 36.000 0.00 0.00 43.98 1.40
1971 1994 7.416664 GGCCATGAAAAGTTCAGCTCATAAATA 60.417 37.037 0.00 0.00 43.98 1.40
1972 1995 7.433425 GCCATGAAAAGTTCAGCTCATAAATAC 59.567 37.037 0.00 0.00 43.98 1.89
1973 1996 8.680903 CCATGAAAAGTTCAGCTCATAAATACT 58.319 33.333 0.00 0.00 43.98 2.12
1974 1997 9.713740 CATGAAAAGTTCAGCTCATAAATACTC 57.286 33.333 0.00 0.00 43.98 2.59
1975 1998 8.268850 TGAAAAGTTCAGCTCATAAATACTCC 57.731 34.615 0.00 0.00 34.08 3.85
1976 1999 7.336931 TGAAAAGTTCAGCTCATAAATACTCCC 59.663 37.037 0.00 0.00 34.08 4.30
1977 2000 6.567602 AAGTTCAGCTCATAAATACTCCCT 57.432 37.500 0.00 0.00 0.00 4.20
1978 2001 6.168270 AGTTCAGCTCATAAATACTCCCTC 57.832 41.667 0.00 0.00 0.00 4.30
1979 2002 5.071115 AGTTCAGCTCATAAATACTCCCTCC 59.929 44.000 0.00 0.00 0.00 4.30
1980 2003 3.574396 TCAGCTCATAAATACTCCCTCCG 59.426 47.826 0.00 0.00 0.00 4.63
1981 2004 3.322254 CAGCTCATAAATACTCCCTCCGT 59.678 47.826 0.00 0.00 0.00 4.69
1982 2005 3.967987 AGCTCATAAATACTCCCTCCGTT 59.032 43.478 0.00 0.00 0.00 4.44
1983 2006 4.039366 AGCTCATAAATACTCCCTCCGTTC 59.961 45.833 0.00 0.00 0.00 3.95
1984 2007 4.799917 GCTCATAAATACTCCCTCCGTTCC 60.800 50.000 0.00 0.00 0.00 3.62
1985 2008 3.319972 TCATAAATACTCCCTCCGTTCCG 59.680 47.826 0.00 0.00 0.00 4.30
1986 2009 1.856629 AAATACTCCCTCCGTTCCGA 58.143 50.000 0.00 0.00 0.00 4.55
1987 2010 1.856629 AATACTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
1988 2011 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
1989 2012 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
1990 2013 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1991 2014 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1992 2015 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
1993 2016 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1994 2017 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1995 2018 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1996 2019 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1997 2020 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
1998 2021 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
1999 2022 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
2000 2023 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
2001 2024 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
2002 2025 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
2003 2026 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
2004 2027 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
2005 2028 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
2006 2029 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
2007 2030 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
2008 2031 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
2009 2032 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
2010 2033 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
2011 2034 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2012 2035 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
2013 2036 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
2014 2037 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
2015 2038 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
2016 2039 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
2017 2040 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
2018 2041 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
2019 2042 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
2020 2043 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
2021 2044 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
2022 2045 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
2023 2046 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
2050 2073 7.251704 AGTTTTAGATACATCCATTTCTGCG 57.748 36.000 0.00 0.00 0.00 5.18
2051 2074 7.047891 AGTTTTAGATACATCCATTTCTGCGA 58.952 34.615 0.00 0.00 0.00 5.10
2052 2075 7.716998 AGTTTTAGATACATCCATTTCTGCGAT 59.283 33.333 0.00 0.00 0.00 4.58
2053 2076 7.425577 TTTAGATACATCCATTTCTGCGATG 57.574 36.000 0.00 0.00 36.72 3.84
2054 2077 5.219343 AGATACATCCATTTCTGCGATGA 57.781 39.130 3.44 0.00 35.42 2.92
2055 2078 5.236282 AGATACATCCATTTCTGCGATGAG 58.764 41.667 3.44 0.00 35.42 2.90
2056 2079 3.272574 ACATCCATTTCTGCGATGAGT 57.727 42.857 3.44 0.00 35.42 3.41
2057 2080 4.406648 ACATCCATTTCTGCGATGAGTA 57.593 40.909 3.44 0.00 35.42 2.59
2058 2081 4.769688 ACATCCATTTCTGCGATGAGTAA 58.230 39.130 3.44 0.00 35.42 2.24
2059 2082 5.371526 ACATCCATTTCTGCGATGAGTAAT 58.628 37.500 3.44 0.00 35.42 1.89
2060 2083 5.824624 ACATCCATTTCTGCGATGAGTAATT 59.175 36.000 3.44 0.00 35.42 1.40
2061 2084 6.319658 ACATCCATTTCTGCGATGAGTAATTT 59.680 34.615 3.44 0.00 35.42 1.82
2062 2085 6.122850 TCCATTTCTGCGATGAGTAATTTG 57.877 37.500 0.00 0.00 0.00 2.32
2063 2086 5.066375 TCCATTTCTGCGATGAGTAATTTGG 59.934 40.000 0.00 0.00 0.00 3.28
2064 2087 5.066375 CCATTTCTGCGATGAGTAATTTGGA 59.934 40.000 0.00 0.00 0.00 3.53
2065 2088 6.404623 CCATTTCTGCGATGAGTAATTTGGAA 60.405 38.462 0.00 0.00 0.00 3.53
2066 2089 5.545658 TTCTGCGATGAGTAATTTGGAAC 57.454 39.130 0.00 0.00 0.00 3.62
2067 2090 3.616821 TCTGCGATGAGTAATTTGGAACG 59.383 43.478 0.00 0.00 0.00 3.95
2068 2091 2.675844 TGCGATGAGTAATTTGGAACGG 59.324 45.455 0.00 0.00 0.00 4.44
2069 2092 2.933906 GCGATGAGTAATTTGGAACGGA 59.066 45.455 0.00 0.00 0.00 4.69
2070 2093 3.001330 GCGATGAGTAATTTGGAACGGAG 59.999 47.826 0.00 0.00 0.00 4.63
2071 2094 3.555956 CGATGAGTAATTTGGAACGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
2072 2095 3.343941 TGAGTAATTTGGAACGGAGGG 57.656 47.619 0.00 0.00 0.00 4.30
2073 2096 2.907696 TGAGTAATTTGGAACGGAGGGA 59.092 45.455 0.00 0.00 0.00 4.20
2074 2097 3.055385 TGAGTAATTTGGAACGGAGGGAG 60.055 47.826 0.00 0.00 0.00 4.30
2699 2722 2.037847 AATGGGTGGCTGAAGGGC 59.962 61.111 0.00 0.00 41.27 5.19
2896 2922 7.786178 TTTTATCTGTGTGGCATATGACTAC 57.214 36.000 10.60 9.61 0.00 2.73
3052 3096 2.231721 GTCCAAGTACACACCTCCTCTC 59.768 54.545 0.00 0.00 0.00 3.20
3467 3511 7.764443 TCACTAAGTCCTACAAGTTTGATATGC 59.236 37.037 0.00 0.00 0.00 3.14
3484 3528 1.000396 GCTGAAGGCAGGGGTTGAT 60.000 57.895 0.00 0.00 42.53 2.57
3760 3804 3.690139 TCGTGTATCTCAGTCTCAAGGTC 59.310 47.826 0.00 0.00 0.00 3.85
3929 3981 5.924769 TCTAGGAGTACATGATAGGTGGA 57.075 43.478 0.00 0.00 0.00 4.02
3946 3998 0.830648 GGAGTGGTGGCAGTGCTATA 59.169 55.000 16.11 0.00 0.00 1.31
4068 4121 3.955145 CACAGGTGCACCCAAGATA 57.045 52.632 32.29 0.00 36.42 1.98
4134 4191 4.280174 TCTGTAACTTAAGCTGTTCTCCGT 59.720 41.667 1.29 0.00 0.00 4.69
4137 4194 6.514947 TGTAACTTAAGCTGTTCTCCGTTTA 58.485 36.000 1.29 0.00 0.00 2.01
4152 4210 8.950961 GTTCTCCGTTTAACTTGTTTTATTCAC 58.049 33.333 0.00 0.00 0.00 3.18
4218 4347 5.420725 TGTCAGAGTGTATATTTGGCTGT 57.579 39.130 0.00 0.00 0.00 4.40
4236 4365 7.129457 TGGCTGTATATCTGAATCTTGACTT 57.871 36.000 0.00 0.00 0.00 3.01
4267 4462 3.945921 CAGTTCCTGCATGATCTGAATGT 59.054 43.478 19.61 0.00 35.15 2.71
4269 4464 5.007430 CAGTTCCTGCATGATCTGAATGTAC 59.993 44.000 19.61 1.44 35.15 2.90
4270 4465 5.104610 AGTTCCTGCATGATCTGAATGTACT 60.105 40.000 0.00 0.00 0.00 2.73
4271 4466 6.098838 AGTTCCTGCATGATCTGAATGTACTA 59.901 38.462 0.00 0.00 0.00 1.82
4272 4467 5.847304 TCCTGCATGATCTGAATGTACTAC 58.153 41.667 0.00 0.00 0.00 2.73
4273 4468 4.993584 CCTGCATGATCTGAATGTACTACC 59.006 45.833 0.00 0.00 0.00 3.18
4274 4469 5.221601 CCTGCATGATCTGAATGTACTACCT 60.222 44.000 0.00 0.00 0.00 3.08
4275 4470 5.847304 TGCATGATCTGAATGTACTACCTC 58.153 41.667 0.00 0.00 0.00 3.85
4276 4471 5.221521 TGCATGATCTGAATGTACTACCTCC 60.222 44.000 0.00 0.00 0.00 4.30
4277 4472 5.465051 CATGATCTGAATGTACTACCTCCG 58.535 45.833 0.00 0.00 0.00 4.63
4278 4473 4.533815 TGATCTGAATGTACTACCTCCGT 58.466 43.478 0.00 0.00 0.00 4.69
4279 4474 4.954202 TGATCTGAATGTACTACCTCCGTT 59.046 41.667 0.00 0.00 0.00 4.44
4280 4475 4.978083 TCTGAATGTACTACCTCCGTTC 57.022 45.455 0.00 0.00 0.00 3.95
4281 4476 4.597004 TCTGAATGTACTACCTCCGTTCT 58.403 43.478 0.00 0.00 0.00 3.01
4282 4477 5.748402 TCTGAATGTACTACCTCCGTTCTA 58.252 41.667 0.00 0.00 0.00 2.10
4283 4478 6.182627 TCTGAATGTACTACCTCCGTTCTAA 58.817 40.000 0.00 0.00 0.00 2.10
4284 4479 6.318144 TCTGAATGTACTACCTCCGTTCTAAG 59.682 42.308 0.00 0.00 0.00 2.18
4285 4480 6.182627 TGAATGTACTACCTCCGTTCTAAGA 58.817 40.000 0.00 0.00 0.00 2.10
4286 4481 6.832384 TGAATGTACTACCTCCGTTCTAAGAT 59.168 38.462 0.00 0.00 0.00 2.40
4287 4482 7.994911 TGAATGTACTACCTCCGTTCTAAGATA 59.005 37.037 0.00 0.00 0.00 1.98
4288 4483 8.937207 AATGTACTACCTCCGTTCTAAGATAT 57.063 34.615 0.00 0.00 0.00 1.63
4291 4486 9.445878 TGTACTACCTCCGTTCTAAGATATATG 57.554 37.037 0.00 0.00 0.00 1.78
4292 4487 9.664332 GTACTACCTCCGTTCTAAGATATATGA 57.336 37.037 0.00 0.00 0.00 2.15
4293 4488 8.564509 ACTACCTCCGTTCTAAGATATATGAC 57.435 38.462 0.00 0.00 0.00 3.06
4294 4489 6.497785 ACCTCCGTTCTAAGATATATGACG 57.502 41.667 0.00 0.00 0.00 4.35
4295 4490 6.002704 ACCTCCGTTCTAAGATATATGACGT 58.997 40.000 0.00 0.00 0.00 4.34
4296 4491 6.489361 ACCTCCGTTCTAAGATATATGACGTT 59.511 38.462 0.00 0.00 0.00 3.99
4297 4492 7.014038 ACCTCCGTTCTAAGATATATGACGTTT 59.986 37.037 0.00 0.00 0.00 3.60
4298 4493 7.326305 CCTCCGTTCTAAGATATATGACGTTTG 59.674 40.741 0.00 0.00 0.00 2.93
4299 4494 7.709947 TCCGTTCTAAGATATATGACGTTTGT 58.290 34.615 0.00 0.00 0.00 2.83
4300 4495 8.839343 TCCGTTCTAAGATATATGACGTTTGTA 58.161 33.333 0.00 0.00 0.00 2.41
4301 4496 9.622004 CCGTTCTAAGATATATGACGTTTGTAT 57.378 33.333 0.00 0.00 0.00 2.29
4309 4504 9.944376 AGATATATGACGTTTGTATATTTGCCT 57.056 29.630 0.00 0.00 0.00 4.75
4310 4505 9.973246 GATATATGACGTTTGTATATTTGCCTG 57.027 33.333 0.00 0.00 0.00 4.85
4311 4506 7.801716 ATATGACGTTTGTATATTTGCCTGT 57.198 32.000 0.00 0.00 0.00 4.00
4312 4507 8.896320 ATATGACGTTTGTATATTTGCCTGTA 57.104 30.769 0.00 0.00 0.00 2.74
4313 4508 6.411630 TGACGTTTGTATATTTGCCTGTAC 57.588 37.500 0.00 0.00 0.00 2.90
4314 4509 6.167685 TGACGTTTGTATATTTGCCTGTACT 58.832 36.000 0.00 0.00 0.00 2.73
4315 4510 7.321908 TGACGTTTGTATATTTGCCTGTACTA 58.678 34.615 0.00 0.00 0.00 1.82
4316 4511 7.490079 TGACGTTTGTATATTTGCCTGTACTAG 59.510 37.037 0.00 0.00 0.00 2.57
4317 4512 6.257193 ACGTTTGTATATTTGCCTGTACTAGC 59.743 38.462 0.00 0.00 0.00 3.42
4318 4513 6.292703 CGTTTGTATATTTGCCTGTACTAGCC 60.293 42.308 5.42 0.00 0.00 3.93
4319 4514 6.494666 TTGTATATTTGCCTGTACTAGCCT 57.505 37.500 5.42 0.00 0.00 4.58
4320 4515 7.606135 TTGTATATTTGCCTGTACTAGCCTA 57.394 36.000 5.42 0.00 0.00 3.93
4321 4516 6.989659 TGTATATTTGCCTGTACTAGCCTAC 58.010 40.000 5.42 0.00 0.00 3.18
4322 4517 6.781014 TGTATATTTGCCTGTACTAGCCTACT 59.219 38.462 5.42 0.00 0.00 2.57
4323 4518 7.946219 TGTATATTTGCCTGTACTAGCCTACTA 59.054 37.037 5.42 0.00 0.00 1.82
4324 4519 7.850935 ATATTTGCCTGTACTAGCCTACTAA 57.149 36.000 5.42 0.00 0.00 2.24
4325 4520 6.555463 ATTTGCCTGTACTAGCCTACTAAA 57.445 37.500 5.42 0.61 0.00 1.85
4326 4521 6.363167 TTTGCCTGTACTAGCCTACTAAAA 57.637 37.500 5.42 0.00 0.00 1.52
4327 4522 5.334724 TGCCTGTACTAGCCTACTAAAAC 57.665 43.478 5.42 0.00 0.00 2.43
4328 4523 4.142315 TGCCTGTACTAGCCTACTAAAACG 60.142 45.833 5.42 0.00 0.00 3.60
4329 4524 4.142293 GCCTGTACTAGCCTACTAAAACGT 60.142 45.833 0.00 0.00 0.00 3.99
4330 4525 5.576895 CCTGTACTAGCCTACTAAAACGTC 58.423 45.833 0.00 0.00 0.00 4.34
4331 4526 5.124457 CCTGTACTAGCCTACTAAAACGTCA 59.876 44.000 0.00 0.00 0.00 4.35
4332 4527 6.183360 CCTGTACTAGCCTACTAAAACGTCAT 60.183 42.308 0.00 0.00 0.00 3.06
4333 4528 7.012704 CCTGTACTAGCCTACTAAAACGTCATA 59.987 40.741 0.00 0.00 0.00 2.15
4334 4529 8.455903 TGTACTAGCCTACTAAAACGTCATAT 57.544 34.615 0.00 0.00 0.00 1.78
4335 4530 9.559732 TGTACTAGCCTACTAAAACGTCATATA 57.440 33.333 0.00 0.00 0.00 0.86
4340 4535 8.516811 AGCCTACTAAAACGTCATATATTTCG 57.483 34.615 0.00 5.19 0.00 3.46
4341 4536 7.597743 AGCCTACTAAAACGTCATATATTTCGG 59.402 37.037 9.93 0.00 0.00 4.30
4342 4537 7.596248 GCCTACTAAAACGTCATATATTTCGGA 59.404 37.037 9.93 0.00 0.00 4.55
4343 4538 9.125906 CCTACTAAAACGTCATATATTTCGGAG 57.874 37.037 9.93 0.00 0.00 4.63
4344 4539 7.404139 ACTAAAACGTCATATATTTCGGAGC 57.596 36.000 9.93 0.00 0.00 4.70
4345 4540 4.966850 AAACGTCATATATTTCGGAGCG 57.033 40.909 9.93 0.00 0.00 5.03
4346 4541 2.942710 ACGTCATATATTTCGGAGCGG 58.057 47.619 9.93 0.00 0.00 5.52
4347 4542 2.555325 ACGTCATATATTTCGGAGCGGA 59.445 45.455 9.93 0.00 0.00 5.54
4348 4543 3.172050 CGTCATATATTTCGGAGCGGAG 58.828 50.000 0.00 0.00 0.00 4.63
4349 4544 3.512680 GTCATATATTTCGGAGCGGAGG 58.487 50.000 0.00 0.00 0.00 4.30
4350 4545 3.056749 GTCATATATTTCGGAGCGGAGGT 60.057 47.826 0.00 0.00 46.54 3.85
4351 4546 4.157289 GTCATATATTTCGGAGCGGAGGTA 59.843 45.833 0.00 0.00 39.88 3.08
4352 4547 4.398358 TCATATATTTCGGAGCGGAGGTAG 59.602 45.833 0.00 0.00 39.88 3.18
4353 4548 2.062971 TATTTCGGAGCGGAGGTAGT 57.937 50.000 0.00 0.00 39.88 2.73
4354 4549 2.062971 ATTTCGGAGCGGAGGTAGTA 57.937 50.000 0.00 0.00 39.88 1.82
4355 4550 2.062971 TTTCGGAGCGGAGGTAGTAT 57.937 50.000 0.00 0.00 39.88 2.12
4356 4551 2.936919 TTCGGAGCGGAGGTAGTATA 57.063 50.000 0.00 0.00 39.88 1.47
4357 4552 3.430042 TTCGGAGCGGAGGTAGTATAT 57.570 47.619 0.00 0.00 39.88 0.86
4358 4553 4.558226 TTCGGAGCGGAGGTAGTATATA 57.442 45.455 0.00 0.00 39.88 0.86
4359 4554 4.767578 TCGGAGCGGAGGTAGTATATAT 57.232 45.455 0.00 0.00 39.88 0.86
4360 4555 4.449131 TCGGAGCGGAGGTAGTATATATG 58.551 47.826 0.00 0.00 39.88 1.78
4361 4556 4.080695 TCGGAGCGGAGGTAGTATATATGT 60.081 45.833 0.00 0.00 39.88 2.29
4362 4557 4.639310 CGGAGCGGAGGTAGTATATATGTT 59.361 45.833 0.00 0.00 39.88 2.71
4363 4558 5.819379 CGGAGCGGAGGTAGTATATATGTTA 59.181 44.000 0.00 0.00 39.88 2.41
4364 4559 6.485984 CGGAGCGGAGGTAGTATATATGTTAT 59.514 42.308 0.00 0.00 39.88 1.89
4365 4560 7.307870 CGGAGCGGAGGTAGTATATATGTTATC 60.308 44.444 0.00 0.00 39.88 1.75
4366 4561 7.720515 GGAGCGGAGGTAGTATATATGTTATCT 59.279 40.741 0.00 0.00 39.88 1.98
4367 4562 8.680039 AGCGGAGGTAGTATATATGTTATCTC 57.320 38.462 0.00 3.29 35.08 2.75
4368 4563 8.496088 AGCGGAGGTAGTATATATGTTATCTCT 58.504 37.037 13.76 0.00 35.08 3.10
4369 4564 9.775854 GCGGAGGTAGTATATATGTTATCTCTA 57.224 37.037 13.76 0.00 0.00 2.43
4388 4583 8.978564 ATCTCTATATTATCTTGTGAACGCAG 57.021 34.615 0.00 0.00 0.00 5.18
4436 4631 7.482169 AATAGTTGAGTCTTGTACATCCAGA 57.518 36.000 0.00 0.00 0.00 3.86
4458 4653 0.179045 AACGCTTGGCTGTGAACTCT 60.179 50.000 0.00 0.00 0.00 3.24
4504 7228 7.563888 TCATTGATGTTTGAGGAATCATCTC 57.436 36.000 0.00 0.00 37.93 2.75
4510 7234 0.755079 TGAGGAATCATCTCCGGCAG 59.245 55.000 0.00 0.00 40.75 4.85
4546 7270 4.400529 TCTTCTGCGCCATTATAGTCAA 57.599 40.909 4.18 0.00 0.00 3.18
4575 7299 4.761739 CACTAGCTGTTTCCTTTCCAATGA 59.238 41.667 0.00 0.00 0.00 2.57
4581 7305 5.009610 GCTGTTTCCTTTCCAATGAGTAACA 59.990 40.000 0.00 0.00 0.00 2.41
4589 7313 6.373216 CCTTTCCAATGAGTAACAATTCGGTA 59.627 38.462 0.00 0.00 0.00 4.02
4615 7339 3.560636 AAATATGCAAGCCTACGACCT 57.439 42.857 0.00 0.00 0.00 3.85
4616 7340 2.533266 ATATGCAAGCCTACGACCTG 57.467 50.000 0.00 0.00 0.00 4.00
4624 7348 0.745468 GCCTACGACCTGTCCTTAGG 59.255 60.000 12.35 12.35 43.71 2.69
4711 10021 5.901884 CGAAATATGTTAACGTCAGCATTCC 59.098 40.000 2.93 0.00 0.00 3.01
4759 10077 6.056236 GGTTTTGGGGCTCTACTTTATCTAG 58.944 44.000 0.00 0.00 0.00 2.43
4760 10078 5.888982 TTTGGGGCTCTACTTTATCTAGG 57.111 43.478 0.00 0.00 0.00 3.02
4761 10079 3.858135 TGGGGCTCTACTTTATCTAGGG 58.142 50.000 0.00 0.00 0.00 3.53
4762 10080 3.469771 TGGGGCTCTACTTTATCTAGGGA 59.530 47.826 0.00 0.00 0.00 4.20
4763 10081 4.078219 TGGGGCTCTACTTTATCTAGGGAA 60.078 45.833 0.00 0.00 0.00 3.97
4764 10082 4.906060 GGGGCTCTACTTTATCTAGGGAAA 59.094 45.833 0.00 0.00 0.00 3.13
4765 10083 5.368816 GGGGCTCTACTTTATCTAGGGAAAA 59.631 44.000 0.00 0.00 0.00 2.29
4766 10084 6.464607 GGGGCTCTACTTTATCTAGGGAAAAG 60.465 46.154 9.46 9.46 36.51 2.27
4767 10085 5.992829 GGCTCTACTTTATCTAGGGAAAAGC 59.007 44.000 10.44 7.33 34.31 3.51
4768 10086 6.183361 GGCTCTACTTTATCTAGGGAAAAGCT 60.183 42.308 10.44 0.00 34.31 3.74
4769 10087 7.276658 GCTCTACTTTATCTAGGGAAAAGCTT 58.723 38.462 0.00 0.00 34.31 3.74
4770 10088 8.422566 GCTCTACTTTATCTAGGGAAAAGCTTA 58.577 37.037 0.00 0.00 34.31 3.09
4782 10100 9.674068 CTAGGGAAAAGCTTAATAATAGATCCC 57.326 37.037 0.00 6.29 42.50 3.85
4783 10101 7.168905 AGGGAAAAGCTTAATAATAGATCCCG 58.831 38.462 0.00 0.00 45.89 5.14
4784 10102 7.017254 AGGGAAAAGCTTAATAATAGATCCCGA 59.983 37.037 0.00 0.00 45.89 5.14
4785 10103 7.664318 GGGAAAAGCTTAATAATAGATCCCGAA 59.336 37.037 0.00 0.00 34.02 4.30
4786 10104 8.722394 GGAAAAGCTTAATAATAGATCCCGAAG 58.278 37.037 0.00 0.00 0.00 3.79
4787 10105 9.490379 GAAAAGCTTAATAATAGATCCCGAAGA 57.510 33.333 0.00 0.00 0.00 2.87
4788 10106 9.495572 AAAAGCTTAATAATAGATCCCGAAGAG 57.504 33.333 0.00 0.00 0.00 2.85
4789 10107 8.423906 AAGCTTAATAATAGATCCCGAAGAGA 57.576 34.615 0.00 0.00 0.00 3.10
4790 10108 8.062065 AGCTTAATAATAGATCCCGAAGAGAG 57.938 38.462 0.00 0.00 0.00 3.20
4791 10109 7.891183 AGCTTAATAATAGATCCCGAAGAGAGA 59.109 37.037 0.00 0.00 0.00 3.10
4792 10110 8.691797 GCTTAATAATAGATCCCGAAGAGAGAT 58.308 37.037 0.00 0.00 0.00 2.75
4799 10117 6.546428 AGATCCCGAAGAGAGATAAAAACA 57.454 37.500 0.00 0.00 0.00 2.83
4800 10118 6.578023 AGATCCCGAAGAGAGATAAAAACAG 58.422 40.000 0.00 0.00 0.00 3.16
4801 10119 5.086104 TCCCGAAGAGAGATAAAAACAGG 57.914 43.478 0.00 0.00 0.00 4.00
4802 10120 4.530946 TCCCGAAGAGAGATAAAAACAGGT 59.469 41.667 0.00 0.00 0.00 4.00
4803 10121 5.718130 TCCCGAAGAGAGATAAAAACAGGTA 59.282 40.000 0.00 0.00 0.00 3.08
4804 10122 6.043411 CCCGAAGAGAGATAAAAACAGGTAG 58.957 44.000 0.00 0.00 0.00 3.18
4805 10123 6.351117 CCCGAAGAGAGATAAAAACAGGTAGT 60.351 42.308 0.00 0.00 0.00 2.73
4806 10124 6.531948 CCGAAGAGAGATAAAAACAGGTAGTG 59.468 42.308 0.00 0.00 0.00 2.74
4807 10125 6.531948 CGAAGAGAGATAAAAACAGGTAGTGG 59.468 42.308 0.00 0.00 0.00 4.00
4808 10126 6.936968 AGAGAGATAAAAACAGGTAGTGGT 57.063 37.500 0.00 0.00 0.00 4.16
4809 10127 7.317722 AGAGAGATAAAAACAGGTAGTGGTT 57.682 36.000 0.00 0.00 37.87 3.67
4815 10133 2.375014 AACAGGTAGTGGTTTTGGGG 57.625 50.000 0.00 0.00 0.00 4.96
4816 10134 0.178973 ACAGGTAGTGGTTTTGGGGC 60.179 55.000 0.00 0.00 0.00 5.80
4817 10135 0.112412 CAGGTAGTGGTTTTGGGGCT 59.888 55.000 0.00 0.00 0.00 5.19
4818 10136 0.404426 AGGTAGTGGTTTTGGGGCTC 59.596 55.000 0.00 0.00 0.00 4.70
4819 10137 0.404426 GGTAGTGGTTTTGGGGCTCT 59.596 55.000 0.00 0.00 0.00 4.09
4820 10138 1.631898 GGTAGTGGTTTTGGGGCTCTA 59.368 52.381 0.00 0.00 0.00 2.43
4821 10139 2.617276 GGTAGTGGTTTTGGGGCTCTAC 60.617 54.545 0.00 0.00 0.00 2.59
4822 10140 1.446016 AGTGGTTTTGGGGCTCTACT 58.554 50.000 0.00 0.00 0.00 2.57
4823 10141 1.780919 AGTGGTTTTGGGGCTCTACTT 59.219 47.619 0.00 0.00 0.00 2.24
4824 10142 2.177016 AGTGGTTTTGGGGCTCTACTTT 59.823 45.455 0.00 0.00 0.00 2.66
4825 10143 3.396611 AGTGGTTTTGGGGCTCTACTTTA 59.603 43.478 0.00 0.00 0.00 1.85
4826 10144 4.044191 AGTGGTTTTGGGGCTCTACTTTAT 59.956 41.667 0.00 0.00 0.00 1.40
4827 10145 4.398358 GTGGTTTTGGGGCTCTACTTTATC 59.602 45.833 0.00 0.00 0.00 1.75
4828 10146 4.291249 TGGTTTTGGGGCTCTACTTTATCT 59.709 41.667 0.00 0.00 0.00 1.98
4829 10147 5.489637 TGGTTTTGGGGCTCTACTTTATCTA 59.510 40.000 0.00 0.00 0.00 1.98
4832 10150 4.174704 TGGGGCTCTACTTTATCTACGA 57.825 45.455 0.00 0.00 0.00 3.43
4937 10255 4.098960 ACTCAAATGCTTGCAATCCTATGG 59.901 41.667 0.00 0.00 32.14 2.74
4940 10258 1.849977 TGCTTGCAATCCTATGGCAA 58.150 45.000 0.00 1.95 44.50 4.52
4960 10278 1.076485 AGGGAGCATGGACCATTGC 60.076 57.895 16.61 16.61 0.00 3.56
4980 10298 2.733227 GCATTGAAGCATTGGAGAACGG 60.733 50.000 0.00 0.00 0.00 4.44
5043 10367 2.027625 CGGTTTGTCTCCGGCTGTC 61.028 63.158 0.00 0.00 43.68 3.51
5048 10372 3.112709 GTCTCCGGCTGTCGTTGC 61.113 66.667 0.00 0.00 37.11 4.17
5154 10478 3.358076 GACGACCTCCTTGCTCGGG 62.358 68.421 0.00 0.00 0.00 5.14
5187 10511 1.196127 GTCGTTGTCCGGGAATTGAAC 59.804 52.381 0.00 0.00 37.11 3.18
5210 10534 2.030457 CGGAAAATGACAGTGGCGATAC 59.970 50.000 0.00 0.00 0.00 2.24
5248 10578 2.461695 CTCCTCCTTGAGTAGCTTCCA 58.538 52.381 0.00 0.00 0.00 3.53
5273 10603 0.519077 CGTCTTCTTGGCTGCTTTCC 59.481 55.000 0.00 0.00 0.00 3.13
5274 10604 1.609208 GTCTTCTTGGCTGCTTTCCA 58.391 50.000 0.00 0.00 0.00 3.53
5275 10605 1.538950 GTCTTCTTGGCTGCTTTCCAG 59.461 52.381 0.00 0.00 44.67 3.86
5285 10806 1.000938 CTGCTTTCCAGGAAACAGCAC 60.001 52.381 20.55 6.01 37.93 4.40
5318 10839 1.369625 CCTTGCAATCTCCGTGTACC 58.630 55.000 0.00 0.00 0.00 3.34
5319 10840 1.066143 CCTTGCAATCTCCGTGTACCT 60.066 52.381 0.00 0.00 0.00 3.08
5320 10841 2.002586 CTTGCAATCTCCGTGTACCTG 58.997 52.381 0.00 0.00 0.00 4.00
5321 10842 0.973632 TGCAATCTCCGTGTACCTGT 59.026 50.000 0.00 0.00 0.00 4.00
5373 10915 2.404789 CCACGCTGCTATTTGCCG 59.595 61.111 0.00 0.00 42.00 5.69
5538 11091 1.377994 CACTGCAGCTCCTCCCTTT 59.622 57.895 15.27 0.00 0.00 3.11
5592 11151 2.595463 GCTGCTGAGCCAACACCA 60.595 61.111 0.23 0.00 39.57 4.17
5603 11181 0.984230 CCAACACCAGAAGGAGCCTA 59.016 55.000 0.00 0.00 38.69 3.93
5741 11319 1.079057 GGCCTCGTTCCTCAAGGAC 60.079 63.158 0.00 0.00 45.39 3.85
5747 11325 0.038159 CGTTCCTCAAGGACGAGCTT 60.038 55.000 12.68 0.00 45.39 3.74
5843 11421 4.204792 TCATGTGAGGGAGATGTCCTAT 57.795 45.455 9.08 0.00 43.36 2.57
5901 11479 2.045926 GAGGTGCCGATGCCAAGT 60.046 61.111 0.00 0.00 36.33 3.16
5902 11480 2.045926 AGGTGCCGATGCCAAGTC 60.046 61.111 0.00 0.00 36.33 3.01
5923 11501 3.196254 TCGGGCTTTATAAAGAAGACGGT 59.804 43.478 26.00 0.00 38.28 4.83
5940 11518 3.986277 ACGGTTAAACGTCTCAAGATGT 58.014 40.909 13.94 0.00 45.08 3.06
5945 11523 3.886044 ACGTCTCAAGATGTTGCGA 57.114 47.368 7.83 0.00 41.16 5.10
6060 11638 8.727100 TTCTTCATTAATATAGGAGCTCCTCA 57.273 34.615 38.44 26.66 44.77 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 0.039618 GCCCCACCCATCAGAAAAGA 59.960 55.000 0.00 0.00 0.00 2.52
413 418 2.687935 GCCTCAGAATGCGGGAAATTTA 59.312 45.455 0.00 0.00 42.51 1.40
416 421 0.753111 GGCCTCAGAATGCGGGAAAT 60.753 55.000 0.00 0.00 42.51 2.17
439 444 3.953775 CCAGTCACGCCCCCAAGT 61.954 66.667 0.00 0.00 0.00 3.16
468 473 0.611714 GCTAGTTCGGTTCTTGGGGA 59.388 55.000 0.00 0.00 0.00 4.81
569 574 3.882888 TGTGATTTGTGGACTGAAGGAAC 59.117 43.478 0.00 0.00 0.00 3.62
573 578 3.885297 AGGTTGTGATTTGTGGACTGAAG 59.115 43.478 0.00 0.00 0.00 3.02
579 587 3.289407 TGACAGGTTGTGATTTGTGGA 57.711 42.857 0.00 0.00 0.00 4.02
582 590 6.048509 GGAAAAATGACAGGTTGTGATTTGT 58.951 36.000 7.26 2.64 41.95 2.83
597 605 4.889409 GGATATGCAGAGTGGGAAAAATGA 59.111 41.667 0.00 0.00 0.00 2.57
605 613 1.269988 CGTCTGGATATGCAGAGTGGG 60.270 57.143 25.43 12.33 0.00 4.61
808 829 3.986006 GACGGTGGCTGGTCGTGA 61.986 66.667 0.00 0.00 37.25 4.35
831 852 3.520402 GAGCTCAGGAGGTCGAGG 58.480 66.667 9.40 0.00 44.60 4.63
902 923 0.609957 TCGAAGCGAGGGGTGTAGAA 60.610 55.000 0.00 0.00 0.00 2.10
915 937 4.193334 GGGGCGGCAATTCGAAGC 62.193 66.667 12.47 1.99 0.00 3.86
916 938 3.876198 CGGGGCGGCAATTCGAAG 61.876 66.667 12.47 0.00 0.00 3.79
941 963 0.438830 GCTACGTGTACTGCAACTGC 59.561 55.000 0.00 0.00 42.50 4.40
944 966 1.779569 ACAGCTACGTGTACTGCAAC 58.220 50.000 12.50 0.00 34.72 4.17
954 976 2.347490 CTGGCCCAACAGCTACGT 59.653 61.111 0.00 0.00 0.00 3.57
994 1016 4.276945 CGCTGACGTCATCTCGAG 57.723 61.111 20.40 5.93 34.70 4.04
1081 1103 1.065854 CCCCTTGAGCTTCCTGTACTG 60.066 57.143 0.00 0.00 0.00 2.74
1254 1276 1.202279 CCGAATTGGCGCATGAAATCA 60.202 47.619 10.83 0.00 0.00 2.57
1257 1279 0.451383 CTCCGAATTGGCGCATGAAA 59.549 50.000 10.83 0.00 37.80 2.69
1275 1297 2.190578 GCCTTAGCATCGGCACCT 59.809 61.111 5.43 0.00 45.59 4.00
1444 1466 0.320771 GGATCGACAGGCACAACAGT 60.321 55.000 0.00 0.00 0.00 3.55
1445 1467 1.021390 GGGATCGACAGGCACAACAG 61.021 60.000 0.00 0.00 0.00 3.16
1572 1594 1.739196 GCCGAACCCTACAACGGAC 60.739 63.158 0.00 0.00 46.94 4.79
1722 1744 2.103373 TGAGAAGACTCCTCCATTCCG 58.897 52.381 0.00 0.00 41.99 4.30
1748 1770 4.122776 GTCGATTATGTCTTGCACCTCAT 58.877 43.478 0.00 0.00 0.00 2.90
1764 1786 3.928727 TGTTCTCTAACACGGTCGATT 57.071 42.857 0.00 0.00 40.69 3.34
1774 1796 7.384660 CCTCTTATGCATGAGATGTTCTCTAAC 59.615 40.741 20.30 0.00 43.73 2.34
1809 1832 5.491070 AGTGCAGCAATGACAACTAGAATA 58.509 37.500 0.00 0.00 0.00 1.75
1824 1847 2.368439 CTAGCCCATAAAAGTGCAGCA 58.632 47.619 0.00 0.00 0.00 4.41
1912 1935 4.278170 CACAAGATTTGGCACTGTCCTAAA 59.722 41.667 0.00 0.00 34.12 1.85
1921 1944 6.586082 CCAATAAGTAACACAAGATTTGGCAC 59.414 38.462 0.00 0.00 34.12 5.01
1955 1978 5.071115 GGAGGGAGTATTTATGAGCTGAACT 59.929 44.000 0.00 0.00 0.00 3.01
1980 2003 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
1981 2004 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
1982 2005 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
1983 2006 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
1984 2007 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
1985 2008 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
1986 2009 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
1987 2010 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
1988 2011 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
1989 2012 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
1990 2013 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
1991 2014 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
1992 2015 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
1993 2016 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
1994 2017 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
1995 2018 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
1996 2019 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
1997 2020 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
2024 2047 8.826710 CGCAGAAATGGATGTATCTAAAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
2025 2048 8.201464 TCGCAGAAATGGATGTATCTAAAACTA 58.799 33.333 0.00 0.00 0.00 2.24
2026 2049 7.047891 TCGCAGAAATGGATGTATCTAAAACT 58.952 34.615 0.00 0.00 0.00 2.66
2027 2050 7.246674 TCGCAGAAATGGATGTATCTAAAAC 57.753 36.000 0.00 0.00 0.00 2.43
2028 2051 7.714813 TCATCGCAGAAATGGATGTATCTAAAA 59.285 33.333 0.80 0.00 43.58 1.52
2029 2052 7.216494 TCATCGCAGAAATGGATGTATCTAAA 58.784 34.615 0.80 0.00 43.58 1.85
2030 2053 6.758254 TCATCGCAGAAATGGATGTATCTAA 58.242 36.000 0.80 0.00 43.58 2.10
2031 2054 6.015095 ACTCATCGCAGAAATGGATGTATCTA 60.015 38.462 0.80 0.00 43.58 1.98
2032 2055 5.219343 TCATCGCAGAAATGGATGTATCT 57.781 39.130 0.80 0.00 43.58 1.98
2033 2056 4.993584 ACTCATCGCAGAAATGGATGTATC 59.006 41.667 0.80 0.00 43.58 2.24
2034 2057 4.965814 ACTCATCGCAGAAATGGATGTAT 58.034 39.130 0.80 0.00 43.58 2.29
2035 2058 4.406648 ACTCATCGCAGAAATGGATGTA 57.593 40.909 0.80 0.00 43.58 2.29
2036 2059 3.272574 ACTCATCGCAGAAATGGATGT 57.727 42.857 0.80 0.00 43.58 3.06
2037 2060 5.936686 ATTACTCATCGCAGAAATGGATG 57.063 39.130 0.00 0.00 43.58 3.51
2038 2061 6.238842 CCAAATTACTCATCGCAGAAATGGAT 60.239 38.462 0.00 0.00 43.58 3.41
2039 2062 5.066375 CCAAATTACTCATCGCAGAAATGGA 59.934 40.000 0.00 0.00 43.58 3.41
2040 2063 5.066375 TCCAAATTACTCATCGCAGAAATGG 59.934 40.000 0.00 0.00 43.58 3.16
2041 2064 6.122850 TCCAAATTACTCATCGCAGAAATG 57.877 37.500 0.00 0.00 43.58 2.32
2042 2065 6.555315 GTTCCAAATTACTCATCGCAGAAAT 58.445 36.000 0.00 0.00 43.58 2.17
2043 2066 5.390461 CGTTCCAAATTACTCATCGCAGAAA 60.390 40.000 0.00 0.00 43.58 2.52
2044 2067 4.092821 CGTTCCAAATTACTCATCGCAGAA 59.907 41.667 0.00 0.00 43.58 3.02
2045 2068 3.616821 CGTTCCAAATTACTCATCGCAGA 59.383 43.478 0.00 0.00 45.75 4.26
2046 2069 3.242413 CCGTTCCAAATTACTCATCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
2047 2070 2.675844 CCGTTCCAAATTACTCATCGCA 59.324 45.455 0.00 0.00 0.00 5.10
2048 2071 2.933906 TCCGTTCCAAATTACTCATCGC 59.066 45.455 0.00 0.00 0.00 4.58
2049 2072 3.555956 CCTCCGTTCCAAATTACTCATCG 59.444 47.826 0.00 0.00 0.00 3.84
2050 2073 3.877508 CCCTCCGTTCCAAATTACTCATC 59.122 47.826 0.00 0.00 0.00 2.92
2051 2074 3.521937 TCCCTCCGTTCCAAATTACTCAT 59.478 43.478 0.00 0.00 0.00 2.90
2052 2075 2.907696 TCCCTCCGTTCCAAATTACTCA 59.092 45.455 0.00 0.00 0.00 3.41
2053 2076 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2054 2077 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2055 2078 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2056 2079 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2057 2080 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2058 2081 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2059 2082 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2060 2083 2.019807 AACTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
2061 2084 2.905415 TAACTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
2062 2085 4.261952 GCTATTAACTACTCCCTCCGTTCC 60.262 50.000 0.00 0.00 0.00 3.62
2063 2086 4.556302 CGCTATTAACTACTCCCTCCGTTC 60.556 50.000 0.00 0.00 0.00 3.95
2064 2087 3.317430 CGCTATTAACTACTCCCTCCGTT 59.683 47.826 0.00 0.00 0.00 4.44
2065 2088 2.883386 CGCTATTAACTACTCCCTCCGT 59.117 50.000 0.00 0.00 0.00 4.69
2066 2089 3.144506 TCGCTATTAACTACTCCCTCCG 58.855 50.000 0.00 0.00 0.00 4.63
2067 2090 4.583907 ACTTCGCTATTAACTACTCCCTCC 59.416 45.833 0.00 0.00 0.00 4.30
2068 2091 5.771153 ACTTCGCTATTAACTACTCCCTC 57.229 43.478 0.00 0.00 0.00 4.30
2069 2092 6.541934 AAACTTCGCTATTAACTACTCCCT 57.458 37.500 0.00 0.00 0.00 4.20
2070 2093 7.606858 AAAAACTTCGCTATTAACTACTCCC 57.393 36.000 0.00 0.00 0.00 4.30
2096 2119 8.871629 TGCCTCTGGAAAAGTTTATGTTTATA 57.128 30.769 0.00 0.00 0.00 0.98
2101 2124 5.140454 AGTTGCCTCTGGAAAAGTTTATGT 58.860 37.500 0.00 0.00 0.00 2.29
2130 2153 7.710475 ACCTGTTGAAATTTTGTACAATTCTGG 59.290 33.333 9.56 12.54 0.00 3.86
2879 2905 4.935205 GTCTTTGTAGTCATATGCCACACA 59.065 41.667 0.00 0.00 0.00 3.72
2896 2922 1.333308 TCACGTTGTGCCATGTCTTTG 59.667 47.619 0.00 0.00 32.98 2.77
3052 3096 5.964168 CACACGTAGATACTTAAACTCCGAG 59.036 44.000 0.00 0.00 0.00 4.63
3467 3511 1.318158 GCATCAACCCCTGCCTTCAG 61.318 60.000 0.00 0.00 40.02 3.02
3484 3528 0.329261 CAATGGAGGAGACCAAGGCA 59.671 55.000 0.00 0.00 43.47 4.75
3733 3777 3.117851 TGAGACTGAGATACACGAGGGAT 60.118 47.826 0.00 0.00 0.00 3.85
3760 3804 4.153117 GCACTGTCTTGAGGAATACACAAG 59.847 45.833 0.00 0.00 41.27 3.16
3929 3981 0.541863 GGTATAGCACTGCCACCACT 59.458 55.000 10.71 0.00 0.00 4.00
3955 4007 2.972713 GAGGGATAAGAGGTGCACCATA 59.027 50.000 36.39 24.95 38.89 2.74
4007 4059 0.108804 ACATCACGGTCGTCATGGAC 60.109 55.000 11.62 0.00 30.69 4.02
4068 4121 5.840081 ACTAGTAGATTGTAACAGGAGGGT 58.160 41.667 3.59 0.00 0.00 4.34
4152 4210 7.933577 TCATGAGCCAGTAAATACAAGGAATAG 59.066 37.037 0.00 0.00 0.00 1.73
4158 4216 6.992123 TGGTATCATGAGCCAGTAAATACAAG 59.008 38.462 15.41 0.00 0.00 3.16
4218 4347 8.774546 ACTCAGGAAGTCAAGATTCAGATATA 57.225 34.615 0.00 0.00 30.02 0.86
4267 4462 9.664332 GTCATATATCTTAGAACGGAGGTAGTA 57.336 37.037 0.00 0.00 0.00 1.82
4269 4464 7.333921 ACGTCATATATCTTAGAACGGAGGTAG 59.666 40.741 6.79 0.00 0.00 3.18
4270 4465 7.164122 ACGTCATATATCTTAGAACGGAGGTA 58.836 38.462 6.79 0.00 0.00 3.08
4271 4466 6.002704 ACGTCATATATCTTAGAACGGAGGT 58.997 40.000 6.79 1.27 0.00 3.85
4272 4467 6.497785 ACGTCATATATCTTAGAACGGAGG 57.502 41.667 6.79 0.77 0.00 4.30
4273 4468 7.861372 ACAAACGTCATATATCTTAGAACGGAG 59.139 37.037 6.79 0.07 0.00 4.63
4274 4469 7.709947 ACAAACGTCATATATCTTAGAACGGA 58.290 34.615 6.79 0.00 0.00 4.69
4275 4470 7.925703 ACAAACGTCATATATCTTAGAACGG 57.074 36.000 6.79 0.00 0.00 4.44
4283 4478 9.944376 AGGCAAATATACAAACGTCATATATCT 57.056 29.630 0.00 0.00 0.00 1.98
4284 4479 9.973246 CAGGCAAATATACAAACGTCATATATC 57.027 33.333 0.00 0.00 0.00 1.63
4285 4480 9.502091 ACAGGCAAATATACAAACGTCATATAT 57.498 29.630 0.00 0.00 0.00 0.86
4286 4481 8.896320 ACAGGCAAATATACAAACGTCATATA 57.104 30.769 0.00 0.00 0.00 0.86
4287 4482 7.801716 ACAGGCAAATATACAAACGTCATAT 57.198 32.000 0.00 0.00 0.00 1.78
4288 4483 7.982919 AGTACAGGCAAATATACAAACGTCATA 59.017 33.333 0.00 0.00 0.00 2.15
4289 4484 6.821665 AGTACAGGCAAATATACAAACGTCAT 59.178 34.615 0.00 0.00 0.00 3.06
4290 4485 6.167685 AGTACAGGCAAATATACAAACGTCA 58.832 36.000 0.00 0.00 0.00 4.35
4291 4486 6.657836 AGTACAGGCAAATATACAAACGTC 57.342 37.500 0.00 0.00 0.00 4.34
4292 4487 6.257193 GCTAGTACAGGCAAATATACAAACGT 59.743 38.462 0.00 0.00 0.00 3.99
4293 4488 6.646636 GCTAGTACAGGCAAATATACAAACG 58.353 40.000 0.00 0.00 0.00 3.60
4307 4502 5.124457 TGACGTTTTAGTAGGCTAGTACAGG 59.876 44.000 8.60 7.12 0.00 4.00
4308 4503 6.187125 TGACGTTTTAGTAGGCTAGTACAG 57.813 41.667 8.60 3.93 0.00 2.74
4309 4504 6.764308 ATGACGTTTTAGTAGGCTAGTACA 57.236 37.500 8.60 0.00 0.00 2.90
4314 4509 9.616634 CGAAATATATGACGTTTTAGTAGGCTA 57.383 33.333 0.00 0.00 0.00 3.93
4315 4510 7.597743 CCGAAATATATGACGTTTTAGTAGGCT 59.402 37.037 0.00 0.00 0.00 4.58
4316 4511 7.596248 TCCGAAATATATGACGTTTTAGTAGGC 59.404 37.037 0.00 0.00 0.00 3.93
4317 4512 9.125906 CTCCGAAATATATGACGTTTTAGTAGG 57.874 37.037 0.00 0.00 0.00 3.18
4318 4513 8.636843 GCTCCGAAATATATGACGTTTTAGTAG 58.363 37.037 0.00 0.00 0.00 2.57
4319 4514 7.324375 CGCTCCGAAATATATGACGTTTTAGTA 59.676 37.037 0.00 0.00 0.00 1.82
4320 4515 6.143438 CGCTCCGAAATATATGACGTTTTAGT 59.857 38.462 0.00 0.00 0.00 2.24
4321 4516 6.399669 CCGCTCCGAAATATATGACGTTTTAG 60.400 42.308 0.00 0.00 0.00 1.85
4322 4517 5.403166 CCGCTCCGAAATATATGACGTTTTA 59.597 40.000 0.00 0.00 0.00 1.52
4323 4518 4.210537 CCGCTCCGAAATATATGACGTTTT 59.789 41.667 0.00 0.00 0.00 2.43
4324 4519 3.739300 CCGCTCCGAAATATATGACGTTT 59.261 43.478 0.00 0.00 0.00 3.60
4325 4520 3.005050 TCCGCTCCGAAATATATGACGTT 59.995 43.478 0.00 0.00 0.00 3.99
4326 4521 2.555325 TCCGCTCCGAAATATATGACGT 59.445 45.455 0.00 0.00 0.00 4.34
4327 4522 3.172050 CTCCGCTCCGAAATATATGACG 58.828 50.000 5.26 5.26 0.00 4.35
4328 4523 3.056749 ACCTCCGCTCCGAAATATATGAC 60.057 47.826 0.00 0.00 0.00 3.06
4329 4524 3.162666 ACCTCCGCTCCGAAATATATGA 58.837 45.455 0.00 0.00 0.00 2.15
4330 4525 3.594603 ACCTCCGCTCCGAAATATATG 57.405 47.619 0.00 0.00 0.00 1.78
4331 4526 4.342359 ACTACCTCCGCTCCGAAATATAT 58.658 43.478 0.00 0.00 0.00 0.86
4332 4527 3.759581 ACTACCTCCGCTCCGAAATATA 58.240 45.455 0.00 0.00 0.00 0.86
4333 4528 2.595238 ACTACCTCCGCTCCGAAATAT 58.405 47.619 0.00 0.00 0.00 1.28
4334 4529 2.062971 ACTACCTCCGCTCCGAAATA 57.937 50.000 0.00 0.00 0.00 1.40
4335 4530 2.062971 TACTACCTCCGCTCCGAAAT 57.937 50.000 0.00 0.00 0.00 2.17
4336 4531 2.062971 ATACTACCTCCGCTCCGAAA 57.937 50.000 0.00 0.00 0.00 3.46
4337 4532 2.936919 TATACTACCTCCGCTCCGAA 57.063 50.000 0.00 0.00 0.00 4.30
4338 4533 4.080695 ACATATATACTACCTCCGCTCCGA 60.081 45.833 0.00 0.00 0.00 4.55
4339 4534 4.197750 ACATATATACTACCTCCGCTCCG 58.802 47.826 0.00 0.00 0.00 4.63
4340 4535 7.720515 AGATAACATATATACTACCTCCGCTCC 59.279 40.741 0.00 0.00 0.00 4.70
4341 4536 8.680039 AGATAACATATATACTACCTCCGCTC 57.320 38.462 0.00 0.00 0.00 5.03
4342 4537 8.496088 AGAGATAACATATATACTACCTCCGCT 58.504 37.037 0.00 0.00 0.00 5.52
4343 4538 8.680039 AGAGATAACATATATACTACCTCCGC 57.320 38.462 0.00 0.00 0.00 5.54
4363 4558 8.031864 CCTGCGTTCACAAGATAATATAGAGAT 58.968 37.037 0.00 0.00 0.00 2.75
4364 4559 7.014326 ACCTGCGTTCACAAGATAATATAGAGA 59.986 37.037 0.00 0.00 0.00 3.10
4365 4560 7.115520 CACCTGCGTTCACAAGATAATATAGAG 59.884 40.741 0.00 0.00 0.00 2.43
4366 4561 6.923508 CACCTGCGTTCACAAGATAATATAGA 59.076 38.462 0.00 0.00 0.00 1.98
4367 4562 6.923508 TCACCTGCGTTCACAAGATAATATAG 59.076 38.462 0.00 0.00 0.00 1.31
4368 4563 6.811954 TCACCTGCGTTCACAAGATAATATA 58.188 36.000 0.00 0.00 0.00 0.86
4369 4564 5.670485 TCACCTGCGTTCACAAGATAATAT 58.330 37.500 0.00 0.00 0.00 1.28
4370 4565 5.079689 TCACCTGCGTTCACAAGATAATA 57.920 39.130 0.00 0.00 0.00 0.98
4371 4566 3.937814 TCACCTGCGTTCACAAGATAAT 58.062 40.909 0.00 0.00 0.00 1.28
4372 4567 3.394674 TCACCTGCGTTCACAAGATAA 57.605 42.857 0.00 0.00 0.00 1.75
4373 4568 3.056179 TGATCACCTGCGTTCACAAGATA 60.056 43.478 0.00 0.00 0.00 1.98
4374 4569 2.289631 TGATCACCTGCGTTCACAAGAT 60.290 45.455 0.00 0.00 0.00 2.40
4375 4570 1.069978 TGATCACCTGCGTTCACAAGA 59.930 47.619 0.00 0.00 0.00 3.02
4376 4571 1.195448 GTGATCACCTGCGTTCACAAG 59.805 52.381 15.31 0.00 38.63 3.16
4377 4572 1.202639 AGTGATCACCTGCGTTCACAA 60.203 47.619 22.21 0.00 40.69 3.33
4378 4573 0.392706 AGTGATCACCTGCGTTCACA 59.607 50.000 22.21 0.00 40.69 3.58
4379 4574 1.195448 CAAGTGATCACCTGCGTTCAC 59.805 52.381 22.21 0.00 38.97 3.18
4380 4575 1.511850 CAAGTGATCACCTGCGTTCA 58.488 50.000 22.21 0.00 0.00 3.18
4381 4576 0.798776 CCAAGTGATCACCTGCGTTC 59.201 55.000 22.21 0.00 0.00 3.95
4382 4577 0.108585 ACCAAGTGATCACCTGCGTT 59.891 50.000 22.21 6.84 0.00 4.84
4383 4578 0.108585 AACCAAGTGATCACCTGCGT 59.891 50.000 22.21 15.51 0.00 5.24
4384 4579 2.093306 TAACCAAGTGATCACCTGCG 57.907 50.000 22.21 14.92 0.00 5.18
4385 4580 4.546570 GTTTTAACCAAGTGATCACCTGC 58.453 43.478 22.21 1.56 0.00 4.85
4417 4612 6.811665 CGTTATTCTGGATGTACAAGACTCAA 59.188 38.462 0.00 0.00 0.00 3.02
4420 4615 5.105310 AGCGTTATTCTGGATGTACAAGACT 60.105 40.000 0.00 0.00 0.00 3.24
4436 4631 2.484264 GAGTTCACAGCCAAGCGTTATT 59.516 45.455 0.00 0.00 0.00 1.40
4504 7228 4.520492 AGATTAATCAAATAAGGCTGCCGG 59.480 41.667 17.56 0.00 0.00 6.13
4510 7234 5.626955 GCGCAGAAGATTAATCAAATAAGGC 59.373 40.000 17.56 9.89 0.00 4.35
4546 7270 1.974236 AGGAAACAGCTAGTGCACTCT 59.026 47.619 25.56 12.89 42.74 3.24
4581 7305 7.193595 GCTTGCATATTTTGTAGTACCGAATT 58.806 34.615 0.00 0.00 0.00 2.17
4589 7313 5.293569 GTCGTAGGCTTGCATATTTTGTAGT 59.706 40.000 0.00 0.00 0.00 2.73
4711 10021 5.120830 CACCACCTGTTTTTATCTCTCTTCG 59.879 44.000 0.00 0.00 0.00 3.79
4759 10077 7.166167 TCGGGATCTATTATTAAGCTTTTCCC 58.834 38.462 3.20 6.23 36.53 3.97
4760 10078 8.617290 TTCGGGATCTATTATTAAGCTTTTCC 57.383 34.615 3.20 0.00 0.00 3.13
4761 10079 9.490379 TCTTCGGGATCTATTATTAAGCTTTTC 57.510 33.333 3.20 0.00 0.00 2.29
4762 10080 9.495572 CTCTTCGGGATCTATTATTAAGCTTTT 57.504 33.333 3.20 0.00 0.00 2.27
4763 10081 8.871125 TCTCTTCGGGATCTATTATTAAGCTTT 58.129 33.333 3.20 0.00 0.00 3.51
4764 10082 8.423906 TCTCTTCGGGATCTATTATTAAGCTT 57.576 34.615 3.48 3.48 0.00 3.74
4765 10083 7.891183 TCTCTCTTCGGGATCTATTATTAAGCT 59.109 37.037 0.00 0.00 0.00 3.74
4766 10084 8.057536 TCTCTCTTCGGGATCTATTATTAAGC 57.942 38.462 0.00 0.00 0.00 3.09
4773 10091 8.705594 TGTTTTTATCTCTCTTCGGGATCTATT 58.294 33.333 0.00 0.00 0.00 1.73
4774 10092 8.251383 TGTTTTTATCTCTCTTCGGGATCTAT 57.749 34.615 0.00 0.00 0.00 1.98
4775 10093 7.201920 CCTGTTTTTATCTCTCTTCGGGATCTA 60.202 40.741 0.00 0.00 0.00 1.98
4776 10094 6.407525 CCTGTTTTTATCTCTCTTCGGGATCT 60.408 42.308 0.00 0.00 0.00 2.75
4777 10095 5.755861 CCTGTTTTTATCTCTCTTCGGGATC 59.244 44.000 0.00 0.00 0.00 3.36
4778 10096 5.189934 ACCTGTTTTTATCTCTCTTCGGGAT 59.810 40.000 0.00 0.00 0.00 3.85
4779 10097 4.530946 ACCTGTTTTTATCTCTCTTCGGGA 59.469 41.667 0.00 0.00 0.00 5.14
4780 10098 4.833390 ACCTGTTTTTATCTCTCTTCGGG 58.167 43.478 0.00 0.00 0.00 5.14
4781 10099 6.531948 CACTACCTGTTTTTATCTCTCTTCGG 59.468 42.308 0.00 0.00 0.00 4.30
4782 10100 6.531948 CCACTACCTGTTTTTATCTCTCTTCG 59.468 42.308 0.00 0.00 0.00 3.79
4783 10101 7.387643 ACCACTACCTGTTTTTATCTCTCTTC 58.612 38.462 0.00 0.00 0.00 2.87
4784 10102 7.317722 ACCACTACCTGTTTTTATCTCTCTT 57.682 36.000 0.00 0.00 0.00 2.85
4785 10103 6.936968 ACCACTACCTGTTTTTATCTCTCT 57.063 37.500 0.00 0.00 0.00 3.10
4786 10104 7.981102 AAACCACTACCTGTTTTTATCTCTC 57.019 36.000 0.00 0.00 30.84 3.20
4787 10105 7.230712 CCAAAACCACTACCTGTTTTTATCTCT 59.769 37.037 0.00 0.00 41.40 3.10
4788 10106 7.368059 CCAAAACCACTACCTGTTTTTATCTC 58.632 38.462 0.00 0.00 41.40 2.75
4789 10107 6.266786 CCCAAAACCACTACCTGTTTTTATCT 59.733 38.462 0.00 0.00 41.40 1.98
4790 10108 6.452242 CCCAAAACCACTACCTGTTTTTATC 58.548 40.000 0.00 0.00 41.40 1.75
4791 10109 5.305902 CCCCAAAACCACTACCTGTTTTTAT 59.694 40.000 0.00 0.00 41.40 1.40
4792 10110 4.650131 CCCCAAAACCACTACCTGTTTTTA 59.350 41.667 0.00 0.00 41.40 1.52
4793 10111 3.452990 CCCCAAAACCACTACCTGTTTTT 59.547 43.478 0.00 0.00 41.40 1.94
4794 10112 3.035363 CCCCAAAACCACTACCTGTTTT 58.965 45.455 0.00 0.00 43.44 2.43
4795 10113 2.673258 CCCCAAAACCACTACCTGTTT 58.327 47.619 0.00 0.00 36.29 2.83
4796 10114 1.756333 GCCCCAAAACCACTACCTGTT 60.756 52.381 0.00 0.00 0.00 3.16
4797 10115 0.178973 GCCCCAAAACCACTACCTGT 60.179 55.000 0.00 0.00 0.00 4.00
4798 10116 0.112412 AGCCCCAAAACCACTACCTG 59.888 55.000 0.00 0.00 0.00 4.00
4799 10117 0.404426 GAGCCCCAAAACCACTACCT 59.596 55.000 0.00 0.00 0.00 3.08
4800 10118 0.404426 AGAGCCCCAAAACCACTACC 59.596 55.000 0.00 0.00 0.00 3.18
4801 10119 2.305052 AGTAGAGCCCCAAAACCACTAC 59.695 50.000 0.00 0.00 0.00 2.73
4802 10120 2.627933 AGTAGAGCCCCAAAACCACTA 58.372 47.619 0.00 0.00 0.00 2.74
4803 10121 1.446016 AGTAGAGCCCCAAAACCACT 58.554 50.000 0.00 0.00 0.00 4.00
4804 10122 2.287977 AAGTAGAGCCCCAAAACCAC 57.712 50.000 0.00 0.00 0.00 4.16
4805 10123 4.291249 AGATAAAGTAGAGCCCCAAAACCA 59.709 41.667 0.00 0.00 0.00 3.67
4806 10124 4.856509 AGATAAAGTAGAGCCCCAAAACC 58.143 43.478 0.00 0.00 0.00 3.27
4807 10125 5.522824 CGTAGATAAAGTAGAGCCCCAAAAC 59.477 44.000 0.00 0.00 0.00 2.43
4808 10126 5.422970 TCGTAGATAAAGTAGAGCCCCAAAA 59.577 40.000 0.00 0.00 0.00 2.44
4809 10127 4.957954 TCGTAGATAAAGTAGAGCCCCAAA 59.042 41.667 0.00 0.00 0.00 3.28
4810 10128 4.539726 TCGTAGATAAAGTAGAGCCCCAA 58.460 43.478 0.00 0.00 0.00 4.12
4811 10129 4.174704 TCGTAGATAAAGTAGAGCCCCA 57.825 45.455 0.00 0.00 0.00 4.96
4812 10130 5.526506 TTTCGTAGATAAAGTAGAGCCCC 57.473 43.478 0.00 0.00 35.04 5.80
4813 10131 7.466193 CTTTTTCGTAGATAAAGTAGAGCCC 57.534 40.000 5.28 0.00 45.79 5.19
4825 10143 9.167311 AGATCATTGTTAAGCTTTTTCGTAGAT 57.833 29.630 3.20 0.92 35.04 1.98
4826 10144 8.547967 AGATCATTGTTAAGCTTTTTCGTAGA 57.452 30.769 3.20 0.00 0.00 2.59
4937 10255 2.048603 GGTCCATGCTCCCTGTTGC 61.049 63.158 0.00 0.00 0.00 4.17
4940 10258 0.033796 CAATGGTCCATGCTCCCTGT 60.034 55.000 4.74 0.00 0.00 4.00
4960 10278 2.159338 CCCGTTCTCCAATGCTTCAATG 60.159 50.000 0.00 0.00 0.00 2.82
4980 10298 1.808133 CGACCAATTCCTAGCTGCTCC 60.808 57.143 4.91 0.00 0.00 4.70
5020 10344 3.650369 CGGAGACAAACCGGTTGG 58.350 61.111 23.08 21.78 45.65 3.77
5043 10367 0.321564 TGTCATCTGGAAGGGCAACG 60.322 55.000 0.00 0.00 37.60 4.10
5048 10372 2.025981 TCACCATTGTCATCTGGAAGGG 60.026 50.000 8.55 0.00 36.35 3.95
5087 10411 2.081725 GACTCGAACAAAGGGGAGTC 57.918 55.000 4.51 4.51 45.79 3.36
5187 10511 1.154225 GCCACTGTCATTTTCCGCG 60.154 57.895 0.00 0.00 0.00 6.46
5210 10534 7.013834 AGGAGGAGGTTGATCTTATAGGTTAG 58.986 42.308 0.00 0.00 0.00 2.34
5248 10578 1.677217 GCAGCCAAGAAGACGATTCCT 60.677 52.381 0.00 0.00 0.00 3.36
5273 10603 3.256383 TGAATCCATTGTGCTGTTTCCTG 59.744 43.478 0.00 0.00 0.00 3.86
5274 10604 3.256631 GTGAATCCATTGTGCTGTTTCCT 59.743 43.478 0.00 0.00 0.00 3.36
5275 10605 3.005684 TGTGAATCCATTGTGCTGTTTCC 59.994 43.478 0.00 0.00 0.00 3.13
5285 10806 1.546923 TGCAAGGCTGTGAATCCATTG 59.453 47.619 0.00 0.00 0.00 2.82
5373 10915 2.960688 GCGGGATATGAGGAGCCCC 61.961 68.421 0.00 0.00 37.27 5.80
5495 11041 1.056660 GGAGAAGTCCAACTGGGTGA 58.943 55.000 0.00 0.00 43.31 4.02
5497 11043 1.481056 CCGGAGAAGTCCAACTGGGT 61.481 60.000 0.00 0.00 44.18 4.51
5501 11054 1.371558 GTGCCGGAGAAGTCCAACT 59.628 57.895 5.05 0.00 44.18 3.16
5538 11091 2.506217 GAGCGTGACGGCGATTCA 60.506 61.111 16.62 4.65 38.18 2.57
5592 11151 4.544564 TCTCAATACCTAGGCTCCTTCT 57.455 45.455 9.30 0.00 0.00 2.85
5603 11181 2.159043 CGGTGCAGACATCTCAATACCT 60.159 50.000 0.00 0.00 0.00 3.08
5747 11325 0.179073 GGAGAGCTTTCATGGCGCTA 60.179 55.000 7.64 0.00 39.71 4.26
5843 11421 3.264998 TCGATGCAATTCTCCATGTCA 57.735 42.857 0.00 0.00 0.00 3.58
5901 11479 3.196254 ACCGTCTTCTTTATAAAGCCCGA 59.804 43.478 18.68 11.93 35.99 5.14
5902 11480 3.528532 ACCGTCTTCTTTATAAAGCCCG 58.471 45.455 18.68 15.73 35.99 6.13
5923 11501 4.052608 TCGCAACATCTTGAGACGTTTAA 58.947 39.130 0.00 0.00 31.88 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.