Multiple sequence alignment - TraesCS6A01G119700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G119700 chr6A 100.000 1359 0 0 1 1359 91422712 91424070 0.000000e+00 2510.0
1 TraesCS6A01G119700 chr6A 100.000 1280 0 0 1641 2920 91424352 91425631 0.000000e+00 2364.0
2 TraesCS6A01G119700 chr6A 89.252 428 39 7 936 1359 107692787 107692363 1.990000e-146 529.0
3 TraesCS6A01G119700 chr6A 88.837 430 39 9 935 1359 107701307 107700882 1.200000e-143 520.0
4 TraesCS6A01G119700 chr6A 90.764 314 27 2 1641 1954 107701058 107700747 4.500000e-113 418.0
5 TraesCS6A01G119700 chr6A 74.346 191 31 12 711 891 541616192 541616010 6.750000e-07 65.8
6 TraesCS6A01G119700 chr6D 92.909 1382 64 15 1 1359 75371302 75372672 0.000000e+00 1978.0
7 TraesCS6A01G119700 chr6D 94.335 812 24 13 1641 2433 75372952 75373760 0.000000e+00 1225.0
8 TraesCS6A01G119700 chr6D 92.479 359 27 0 1001 1359 75372542 75372900 5.580000e-142 514.0
9 TraesCS6A01G119700 chr6D 90.025 401 35 5 937 1334 89356340 89355942 5.580000e-142 514.0
10 TraesCS6A01G119700 chr6D 88.854 314 33 2 1641 1954 89355601 89355290 4.560000e-103 385.0
11 TraesCS6A01G119700 chr6D 90.583 223 21 0 2598 2820 466012877 466013099 2.200000e-76 296.0
12 TraesCS6A01G119700 chr6D 88.571 140 16 0 2621 2760 461927715 461927576 1.390000e-38 171.0
13 TraesCS6A01G119700 chr6B 86.831 729 41 22 1 717 149054315 149055000 0.000000e+00 763.0
14 TraesCS6A01G119700 chr6B 94.177 498 25 3 864 1359 149055048 149055543 0.000000e+00 756.0
15 TraesCS6A01G119700 chr6B 83.926 647 55 20 1641 2258 149055595 149056221 9.080000e-160 573.0
16 TraesCS6A01G119700 chr6B 91.755 376 27 4 986 1359 171728475 171728102 1.200000e-143 520.0
17 TraesCS6A01G119700 chr6B 94.526 274 15 0 1641 1914 149055367 149055640 9.670000e-115 424.0
18 TraesCS6A01G119700 chr6B 90.446 314 28 2 1641 1954 171805194 171804883 2.090000e-111 412.0
19 TraesCS6A01G119700 chr6B 90.127 314 29 2 1641 1954 171768459 171768148 9.740000e-110 407.0
20 TraesCS6A01G119700 chr6B 90.541 222 21 0 2598 2819 309685713 309685934 7.910000e-76 294.0
21 TraesCS6A01G119700 chr6B 100.000 30 0 0 680 709 171972286 171972257 4.070000e-04 56.5
22 TraesCS6A01G119700 chr2B 89.171 434 45 2 928 1359 613037740 613037307 9.210000e-150 540.0
23 TraesCS6A01G119700 chr2B 83.279 305 18 16 1985 2265 575947658 575947363 1.740000e-62 250.0
24 TraesCS6A01G119700 chr2B 90.152 132 12 1 2127 2258 214277956 214278086 1.390000e-38 171.0
25 TraesCS6A01G119700 chr2B 74.725 182 33 9 712 891 691168556 691168386 5.220000e-08 69.4
26 TraesCS6A01G119700 chr2B 92.308 39 3 0 2430 2468 396107375 396107413 4.070000e-04 56.5
27 TraesCS6A01G119700 chr2B 92.308 39 3 0 2430 2468 396141926 396141964 4.070000e-04 56.5
28 TraesCS6A01G119700 chr2B 94.444 36 1 1 704 739 662793163 662793197 1.000000e-03 54.7
29 TraesCS6A01G119700 chr2D 89.524 420 43 1 937 1355 520583588 520583169 5.540000e-147 531.0
30 TraesCS6A01G119700 chr2A 92.739 303 22 0 1641 1943 665843408 665843106 3.450000e-119 438.0
31 TraesCS6A01G119700 chr2A 89.769 303 31 0 1641 1943 665990424 665990122 3.530000e-104 388.0
32 TraesCS6A01G119700 chr2A 92.793 222 16 0 2598 2819 755117029 755117250 3.630000e-84 322.0
33 TraesCS6A01G119700 chr2A 85.350 157 15 6 37 190 665845250 665845099 3.900000e-34 156.0
34 TraesCS6A01G119700 chr5A 92.342 222 17 0 2598 2819 377925061 377924840 1.690000e-82 316.0
35 TraesCS6A01G119700 chr7B 91.071 224 20 0 2598 2821 58434442 58434219 1.310000e-78 303.0
36 TraesCS6A01G119700 chr7B 89.394 132 13 1 2127 2258 123030599 123030729 6.470000e-37 165.0
37 TraesCS6A01G119700 chr7B 87.879 132 15 1 2127 2258 122952579 122952709 1.400000e-33 154.0
38 TraesCS6A01G119700 chr7B 100.000 28 0 0 712 739 482279512 482279539 5.000000e-03 52.8
39 TraesCS6A01G119700 chr4D 90.090 222 22 0 2598 2819 416431815 416431594 3.680000e-74 289.0
40 TraesCS6A01G119700 chr4A 90.090 222 22 0 2598 2819 121496053 121496274 3.680000e-74 289.0
41 TraesCS6A01G119700 chr3A 90.090 222 22 0 2598 2819 12408954 12408733 3.680000e-74 289.0
42 TraesCS6A01G119700 chr3A 100.000 29 0 0 712 740 133685246 133685218 1.000000e-03 54.7
43 TraesCS6A01G119700 chr1B 90.090 222 22 0 2598 2819 505094433 505094212 3.680000e-74 289.0
44 TraesCS6A01G119700 chr1B 82.724 301 22 11 1981 2258 415854293 415854586 1.050000e-59 241.0
45 TraesCS6A01G119700 chr1D 91.589 107 6 3 2417 2520 438023590 438023696 8.430000e-31 145.0
46 TraesCS6A01G119700 chr7A 94.444 90 5 0 2431 2520 137822042 137821953 3.920000e-29 139.0
47 TraesCS6A01G119700 chr3D 79.397 199 20 10 712 899 93614896 93614708 1.420000e-23 121.0
48 TraesCS6A01G119700 chr1A 75.576 217 31 11 695 900 53670636 53670431 1.440000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G119700 chr6A 91422712 91425631 2919 False 2437.0 2510 100.0000 1 2920 2 chr6A.!!$F1 2919
1 TraesCS6A01G119700 chr6A 107700747 107701307 560 True 469.0 520 89.8005 935 1954 2 chr6A.!!$R3 1019
2 TraesCS6A01G119700 chr6D 75371302 75373760 2458 False 1239.0 1978 93.2410 1 2433 3 chr6D.!!$F2 2432
3 TraesCS6A01G119700 chr6D 89355290 89356340 1050 True 449.5 514 89.4395 937 1954 2 chr6D.!!$R2 1017
4 TraesCS6A01G119700 chr6B 149054315 149056221 1906 False 629.0 763 89.8650 1 2258 4 chr6B.!!$F2 2257
5 TraesCS6A01G119700 chr2A 665843106 665845250 2144 True 297.0 438 89.0445 37 1943 2 chr2A.!!$R2 1906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 365 0.938713 TTCGTTTGGATTTCGCGTGT 59.061 45.0 5.77 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2138 2770 0.109086 CACAGAGAGCCACTACGGTG 60.109 60.0 0.0 0.0 42.65 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
218 221 1.516603 GAGGTGCTTCGCGGTAGTC 60.517 63.158 6.13 1.83 0.00 2.59
314 322 1.548973 CCCGATCTATTCGCGCACAC 61.549 60.000 8.75 0.00 46.71 3.82
324 351 2.585869 CGCGCACACAGACTTCGTT 61.586 57.895 8.75 0.00 0.00 3.85
338 365 0.938713 TTCGTTTGGATTTCGCGTGT 59.061 45.000 5.77 0.00 0.00 4.49
361 388 2.930040 CCTCGCGATTTCTTTTCTGCTA 59.070 45.455 10.36 0.00 0.00 3.49
402 434 4.543590 AGATCTGTTCGTCTTGGTTGAT 57.456 40.909 0.00 0.00 0.00 2.57
427 459 3.261897 CCTAATGGCTTATGGTCTCGGAT 59.738 47.826 0.00 0.00 0.00 4.18
428 460 3.864789 AATGGCTTATGGTCTCGGATT 57.135 42.857 0.00 0.00 0.00 3.01
429 461 3.864789 ATGGCTTATGGTCTCGGATTT 57.135 42.857 0.00 0.00 0.00 2.17
437 469 6.128117 GCTTATGGTCTCGGATTTTGTTAACA 60.128 38.462 3.59 3.59 0.00 2.41
468 501 6.448852 TGTTTTATCTGCTACTTGTACGTCA 58.551 36.000 0.00 0.00 0.00 4.35
481 514 3.079578 TGTACGTCAGTTCCTTCTCGAT 58.920 45.455 0.00 0.00 0.00 3.59
524 605 7.334421 CAGTAGTTCAATAGTGCTTGTACCAAT 59.666 37.037 0.00 0.00 29.56 3.16
528 609 8.046708 AGTTCAATAGTGCTTGTACCAATATCA 58.953 33.333 0.00 0.00 29.56 2.15
550 633 6.762571 TCATCCTAATAGGCCCAGGATTATA 58.237 40.000 18.53 8.48 45.01 0.98
606 696 3.069586 TCTTAGATGGTAAGCATGTCCGG 59.930 47.826 0.00 0.00 0.00 5.14
630 720 3.118112 AGCTATGTGGAACCCTTGAGATG 60.118 47.826 0.00 0.00 34.36 2.90
711 803 3.236816 CTGCTGCCGTTTGTTTATTCTG 58.763 45.455 0.00 0.00 0.00 3.02
713 805 2.030274 GCTGCCGTTTGTTTATTCTGGT 60.030 45.455 0.00 0.00 0.00 4.00
716 808 4.643463 TGCCGTTTGTTTATTCTGGTCTA 58.357 39.130 0.00 0.00 0.00 2.59
810 922 6.828785 ACTAAAAGAAGATTACCCGCATGAAT 59.171 34.615 0.00 0.00 0.00 2.57
860 972 7.224949 GGACTTAAGATGTGCAATACTTAGGTC 59.775 40.741 24.67 24.67 43.97 3.85
1131 1263 1.078848 GGACCAGCAGCGTCTCATT 60.079 57.895 1.07 0.00 0.00 2.57
1221 1353 2.657237 CTTGTCCTCCGCCTTCGT 59.343 61.111 0.00 0.00 0.00 3.85
1658 2264 1.986413 CCAGAAGGAGTCCACCCTG 59.014 63.158 12.86 14.10 36.89 4.45
1886 2492 1.089978 TCCAGAAGGAGTCCACCCTA 58.910 55.000 12.86 0.00 39.61 3.53
2027 2634 2.551887 TGATGATGTGTGTTGGTTTCGG 59.448 45.455 0.00 0.00 0.00 4.30
2064 2671 7.468631 GCTGGTATGGTTTGGTATGAATAAGTG 60.469 40.741 0.00 0.00 0.00 3.16
2087 2694 7.385752 AGTGAATTTGAACCAATATGCTTGTTG 59.614 33.333 2.52 2.52 0.00 3.33
2089 2696 7.930325 TGAATTTGAACCAATATGCTTGTTGAA 59.070 29.630 10.16 0.00 0.00 2.69
2091 2698 7.655236 TTTGAACCAATATGCTTGTTGAATG 57.345 32.000 10.16 0.00 0.00 2.67
2093 2700 6.757237 TGAACCAATATGCTTGTTGAATGTT 58.243 32.000 10.16 6.35 0.00 2.71
2094 2701 7.215789 TGAACCAATATGCTTGTTGAATGTTT 58.784 30.769 10.16 0.00 0.00 2.83
2095 2702 7.384660 TGAACCAATATGCTTGTTGAATGTTTC 59.615 33.333 10.16 5.87 0.00 2.78
2098 2705 7.599998 ACCAATATGCTTGTTGAATGTTTCTTC 59.400 33.333 10.16 0.00 0.00 2.87
2099 2706 7.816031 CCAATATGCTTGTTGAATGTTTCTTCT 59.184 33.333 10.16 0.00 0.00 2.85
2100 2707 8.644619 CAATATGCTTGTTGAATGTTTCTTCTG 58.355 33.333 3.33 0.00 0.00 3.02
2101 2708 4.935702 TGCTTGTTGAATGTTTCTTCTGG 58.064 39.130 0.00 0.00 0.00 3.86
2104 2711 5.812127 GCTTGTTGAATGTTTCTTCTGGTTT 59.188 36.000 0.00 0.00 0.00 3.27
2105 2712 6.237915 GCTTGTTGAATGTTTCTTCTGGTTTG 60.238 38.462 0.00 0.00 0.00 2.93
2108 2733 7.158021 TGTTGAATGTTTCTTCTGGTTTGTTT 58.842 30.769 0.00 0.00 0.00 2.83
2138 2770 8.391106 CCAGTTTTTACAACTAGCAGTGATATC 58.609 37.037 0.00 0.00 0.00 1.63
2154 2786 2.730934 TATCACCGTAGTGGCTCTCT 57.269 50.000 0.00 0.00 44.64 3.10
2155 2787 1.107114 ATCACCGTAGTGGCTCTCTG 58.893 55.000 0.00 0.00 44.64 3.35
2299 2933 1.012841 CTGCTTGCTTGCTACTAGCC 58.987 55.000 5.58 0.00 41.51 3.93
2379 3014 2.443887 AATGCATGAAGTTGTGGTGC 57.556 45.000 0.00 0.00 36.39 5.01
2435 3070 9.620660 AATTTATGAATCAAACAAACGTACTCC 57.379 29.630 0.00 0.00 0.00 3.85
2436 3071 5.622770 ATGAATCAAACAAACGTACTCCC 57.377 39.130 0.00 0.00 0.00 4.30
2437 3072 4.710324 TGAATCAAACAAACGTACTCCCT 58.290 39.130 0.00 0.00 0.00 4.20
2438 3073 4.753107 TGAATCAAACAAACGTACTCCCTC 59.247 41.667 0.00 0.00 0.00 4.30
2439 3074 4.618920 ATCAAACAAACGTACTCCCTCT 57.381 40.909 0.00 0.00 0.00 3.69
2440 3075 4.411256 TCAAACAAACGTACTCCCTCTT 57.589 40.909 0.00 0.00 0.00 2.85
2441 3076 4.773013 TCAAACAAACGTACTCCCTCTTT 58.227 39.130 0.00 0.00 0.00 2.52
2442 3077 5.187687 TCAAACAAACGTACTCCCTCTTTT 58.812 37.500 0.00 0.00 0.00 2.27
2443 3078 5.295045 TCAAACAAACGTACTCCCTCTTTTC 59.705 40.000 0.00 0.00 0.00 2.29
2444 3079 4.411256 ACAAACGTACTCCCTCTTTTCA 57.589 40.909 0.00 0.00 0.00 2.69
2445 3080 4.969484 ACAAACGTACTCCCTCTTTTCAT 58.031 39.130 0.00 0.00 0.00 2.57
2446 3081 5.374071 ACAAACGTACTCCCTCTTTTCATT 58.626 37.500 0.00 0.00 0.00 2.57
2447 3082 5.826208 ACAAACGTACTCCCTCTTTTCATTT 59.174 36.000 0.00 0.00 0.00 2.32
2448 3083 6.320418 ACAAACGTACTCCCTCTTTTCATTTT 59.680 34.615 0.00 0.00 0.00 1.82
2449 3084 6.954487 AACGTACTCCCTCTTTTCATTTTT 57.046 33.333 0.00 0.00 0.00 1.94
2450 3085 8.347035 CAAACGTACTCCCTCTTTTCATTTTTA 58.653 33.333 0.00 0.00 0.00 1.52
2451 3086 8.631480 AACGTACTCCCTCTTTTCATTTTTAT 57.369 30.769 0.00 0.00 0.00 1.40
2452 3087 9.729281 AACGTACTCCCTCTTTTCATTTTTATA 57.271 29.630 0.00 0.00 0.00 0.98
2453 3088 9.729281 ACGTACTCCCTCTTTTCATTTTTATAA 57.271 29.630 0.00 0.00 0.00 0.98
2457 3092 8.947115 ACTCCCTCTTTTCATTTTTATAAGACG 58.053 33.333 0.00 0.00 0.00 4.18
2458 3093 8.857694 TCCCTCTTTTCATTTTTATAAGACGT 57.142 30.769 0.00 0.00 0.00 4.34
2459 3094 9.292195 TCCCTCTTTTCATTTTTATAAGACGTT 57.708 29.630 0.00 0.00 0.00 3.99
2460 3095 9.908152 CCCTCTTTTCATTTTTATAAGACGTTT 57.092 29.630 0.00 0.00 0.00 3.60
2483 3118 5.936686 CAGACATCTGACATTGAACTGTT 57.063 39.130 2.51 0.00 46.59 3.16
2484 3119 6.309712 CAGACATCTGACATTGAACTGTTT 57.690 37.500 2.51 0.00 46.59 2.83
2485 3120 6.732154 CAGACATCTGACATTGAACTGTTTT 58.268 36.000 2.51 0.00 46.59 2.43
2486 3121 6.635641 CAGACATCTGACATTGAACTGTTTTG 59.364 38.462 2.51 0.00 46.59 2.44
2487 3122 6.543465 AGACATCTGACATTGAACTGTTTTGA 59.457 34.615 0.00 0.00 0.00 2.69
2488 3123 6.498304 ACATCTGACATTGAACTGTTTTGAC 58.502 36.000 0.00 0.00 0.00 3.18
2489 3124 6.319658 ACATCTGACATTGAACTGTTTTGACT 59.680 34.615 0.00 0.00 0.00 3.41
2490 3125 6.122850 TCTGACATTGAACTGTTTTGACTG 57.877 37.500 0.00 0.00 0.00 3.51
2491 3126 5.647658 TCTGACATTGAACTGTTTTGACTGT 59.352 36.000 0.00 0.00 0.00 3.55
2492 3127 6.150976 TCTGACATTGAACTGTTTTGACTGTT 59.849 34.615 0.00 2.15 35.09 3.16
2493 3128 6.092092 TGACATTGAACTGTTTTGACTGTTG 58.908 36.000 6.55 0.00 33.07 3.33
2494 3129 6.024552 ACATTGAACTGTTTTGACTGTTGT 57.975 33.333 6.55 0.00 33.07 3.32
2495 3130 6.092748 ACATTGAACTGTTTTGACTGTTGTC 58.907 36.000 6.55 0.00 43.20 3.18
2496 3131 5.957842 TTGAACTGTTTTGACTGTTGTCT 57.042 34.783 6.55 0.00 43.29 3.41
2497 3132 5.295431 TGAACTGTTTTGACTGTTGTCTG 57.705 39.130 6.55 0.00 43.29 3.51
2498 3133 5.000591 TGAACTGTTTTGACTGTTGTCTGA 58.999 37.500 6.55 0.00 43.29 3.27
2499 3134 5.471797 TGAACTGTTTTGACTGTTGTCTGAA 59.528 36.000 6.55 0.00 43.29 3.02
2500 3135 5.957842 ACTGTTTTGACTGTTGTCTGAAA 57.042 34.783 0.00 0.00 43.29 2.69
2501 3136 6.515272 ACTGTTTTGACTGTTGTCTGAAAT 57.485 33.333 0.00 0.00 43.29 2.17
2502 3137 6.324819 ACTGTTTTGACTGTTGTCTGAAATG 58.675 36.000 0.00 0.00 43.29 2.32
2503 3138 5.649557 TGTTTTGACTGTTGTCTGAAATGG 58.350 37.500 0.00 0.00 43.29 3.16
2504 3139 3.988379 TTGACTGTTGTCTGAAATGGC 57.012 42.857 0.00 0.00 43.29 4.40
2505 3140 3.213206 TGACTGTTGTCTGAAATGGCT 57.787 42.857 0.00 0.00 43.29 4.75
2506 3141 4.350368 TGACTGTTGTCTGAAATGGCTA 57.650 40.909 0.00 0.00 43.29 3.93
2507 3142 4.065088 TGACTGTTGTCTGAAATGGCTAC 58.935 43.478 0.00 0.00 43.29 3.58
2508 3143 4.065088 GACTGTTGTCTGAAATGGCTACA 58.935 43.478 0.00 0.00 39.94 2.74
2509 3144 4.067896 ACTGTTGTCTGAAATGGCTACAG 58.932 43.478 8.58 8.58 39.38 2.74
2510 3145 2.813754 TGTTGTCTGAAATGGCTACAGC 59.186 45.455 0.00 0.00 41.14 4.40
2511 3146 1.725641 TGTCTGAAATGGCTACAGCG 58.274 50.000 0.00 0.00 43.26 5.18
2512 3147 1.001974 TGTCTGAAATGGCTACAGCGT 59.998 47.619 0.00 0.00 43.26 5.07
2513 3148 1.661112 GTCTGAAATGGCTACAGCGTC 59.339 52.381 0.00 0.00 43.26 5.19
2514 3149 1.550524 TCTGAAATGGCTACAGCGTCT 59.449 47.619 0.00 0.00 43.26 4.18
2515 3150 2.028112 TCTGAAATGGCTACAGCGTCTT 60.028 45.455 0.00 0.00 43.26 3.01
2516 3151 3.194755 TCTGAAATGGCTACAGCGTCTTA 59.805 43.478 0.00 0.00 43.26 2.10
2517 3152 4.122776 CTGAAATGGCTACAGCGTCTTAT 58.877 43.478 0.00 0.00 43.26 1.73
2518 3153 5.068591 TCTGAAATGGCTACAGCGTCTTATA 59.931 40.000 0.00 0.00 43.26 0.98
2519 3154 5.666462 TGAAATGGCTACAGCGTCTTATAA 58.334 37.500 0.00 0.00 43.26 0.98
2520 3155 5.753438 TGAAATGGCTACAGCGTCTTATAAG 59.247 40.000 6.11 6.11 43.26 1.73
2521 3156 3.728076 TGGCTACAGCGTCTTATAAGG 57.272 47.619 12.54 0.00 43.26 2.69
2522 3157 2.223971 TGGCTACAGCGTCTTATAAGGC 60.224 50.000 12.54 9.88 43.26 4.35
2523 3158 2.036089 GGCTACAGCGTCTTATAAGGCT 59.964 50.000 14.86 12.06 43.26 4.58
2524 3159 3.492829 GGCTACAGCGTCTTATAAGGCTT 60.493 47.826 14.86 4.58 43.26 4.35
2525 3160 4.120589 GCTACAGCGTCTTATAAGGCTTT 58.879 43.478 14.86 10.58 38.25 3.51
2526 3161 4.571176 GCTACAGCGTCTTATAAGGCTTTT 59.429 41.667 14.86 0.00 38.25 2.27
2527 3162 5.064834 GCTACAGCGTCTTATAAGGCTTTTT 59.935 40.000 14.86 5.40 38.25 1.94
2528 3163 5.547181 ACAGCGTCTTATAAGGCTTTTTC 57.453 39.130 14.86 0.03 38.25 2.29
2529 3164 4.395231 ACAGCGTCTTATAAGGCTTTTTCC 59.605 41.667 14.86 0.00 38.25 3.13
2530 3165 4.394920 CAGCGTCTTATAAGGCTTTTTCCA 59.605 41.667 14.86 0.00 38.25 3.53
2531 3166 5.007682 AGCGTCTTATAAGGCTTTTTCCAA 58.992 37.500 14.86 0.00 37.06 3.53
2532 3167 5.652452 AGCGTCTTATAAGGCTTTTTCCAAT 59.348 36.000 14.86 0.00 37.06 3.16
2533 3168 5.743872 GCGTCTTATAAGGCTTTTTCCAATG 59.256 40.000 14.86 0.00 0.00 2.82
2534 3169 5.743872 CGTCTTATAAGGCTTTTTCCAATGC 59.256 40.000 14.86 0.00 33.25 3.56
2535 3170 6.624861 CGTCTTATAAGGCTTTTTCCAATGCA 60.625 38.462 14.86 0.00 35.25 3.96
2536 3171 7.267857 GTCTTATAAGGCTTTTTCCAATGCAT 58.732 34.615 9.90 0.00 35.25 3.96
2537 3172 7.223387 GTCTTATAAGGCTTTTTCCAATGCATG 59.777 37.037 9.90 0.00 35.25 4.06
2552 3187 2.785868 CATGGGTGCTTAGAGGTGC 58.214 57.895 0.00 0.00 0.00 5.01
2553 3188 0.035152 CATGGGTGCTTAGAGGTGCA 60.035 55.000 0.00 0.00 36.79 4.57
2554 3189 0.698238 ATGGGTGCTTAGAGGTGCAA 59.302 50.000 0.00 0.00 41.10 4.08
2555 3190 0.036732 TGGGTGCTTAGAGGTGCAAG 59.963 55.000 0.00 0.00 41.10 4.01
2556 3191 0.036875 GGGTGCTTAGAGGTGCAAGT 59.963 55.000 0.00 0.00 41.10 3.16
2557 3192 1.160137 GGTGCTTAGAGGTGCAAGTG 58.840 55.000 0.00 0.00 41.10 3.16
2558 3193 0.519077 GTGCTTAGAGGTGCAAGTGC 59.481 55.000 0.00 0.00 41.10 4.40
2577 3212 9.196552 GCAAGTGCATTAAAAATCTTAGAAACT 57.803 29.630 0.00 0.00 41.59 2.66
2587 3222 8.549338 AAAAATCTTAGAAACTACTCCTTCCG 57.451 34.615 0.00 0.00 0.00 4.30
2588 3223 6.854091 AATCTTAGAAACTACTCCTTCCGT 57.146 37.500 0.00 0.00 0.00 4.69
2589 3224 5.893897 TCTTAGAAACTACTCCTTCCGTC 57.106 43.478 0.00 0.00 0.00 4.79
2590 3225 4.704057 TCTTAGAAACTACTCCTTCCGTCC 59.296 45.833 0.00 0.00 0.00 4.79
2591 3226 3.172471 AGAAACTACTCCTTCCGTCCT 57.828 47.619 0.00 0.00 0.00 3.85
2592 3227 3.508426 AGAAACTACTCCTTCCGTCCTT 58.492 45.455 0.00 0.00 0.00 3.36
2593 3228 3.902467 AGAAACTACTCCTTCCGTCCTTT 59.098 43.478 0.00 0.00 0.00 3.11
2594 3229 5.082425 AGAAACTACTCCTTCCGTCCTTTA 58.918 41.667 0.00 0.00 0.00 1.85
2595 3230 5.541484 AGAAACTACTCCTTCCGTCCTTTAA 59.459 40.000 0.00 0.00 0.00 1.52
2596 3231 5.813513 AACTACTCCTTCCGTCCTTTAAA 57.186 39.130 0.00 0.00 0.00 1.52
2597 3232 5.402997 ACTACTCCTTCCGTCCTTTAAAG 57.597 43.478 8.32 8.32 0.00 1.85
2598 3233 5.082425 ACTACTCCTTCCGTCCTTTAAAGA 58.918 41.667 16.98 0.24 0.00 2.52
2599 3234 4.538746 ACTCCTTCCGTCCTTTAAAGAG 57.461 45.455 16.98 7.03 0.00 2.85
2600 3235 3.902467 ACTCCTTCCGTCCTTTAAAGAGT 59.098 43.478 16.98 6.02 0.00 3.24
2601 3236 4.246458 CTCCTTCCGTCCTTTAAAGAGTG 58.754 47.826 16.98 5.33 0.00 3.51
2602 3237 3.644738 TCCTTCCGTCCTTTAAAGAGTGT 59.355 43.478 16.98 0.00 0.00 3.55
2603 3238 3.995048 CCTTCCGTCCTTTAAAGAGTGTC 59.005 47.826 16.98 0.00 0.00 3.67
2604 3239 4.502604 CCTTCCGTCCTTTAAAGAGTGTCA 60.503 45.833 16.98 0.00 0.00 3.58
2605 3240 4.675976 TCCGTCCTTTAAAGAGTGTCAA 57.324 40.909 16.98 0.00 0.00 3.18
2606 3241 5.026038 TCCGTCCTTTAAAGAGTGTCAAA 57.974 39.130 16.98 0.00 0.00 2.69
2607 3242 4.812626 TCCGTCCTTTAAAGAGTGTCAAAC 59.187 41.667 16.98 0.25 0.00 2.93
2608 3243 4.814771 CCGTCCTTTAAAGAGTGTCAAACT 59.185 41.667 16.98 0.00 43.85 2.66
2609 3244 5.987347 CCGTCCTTTAAAGAGTGTCAAACTA 59.013 40.000 16.98 0.00 40.07 2.24
2610 3245 6.649557 CCGTCCTTTAAAGAGTGTCAAACTAT 59.350 38.462 16.98 0.00 40.07 2.12
2611 3246 7.148623 CCGTCCTTTAAAGAGTGTCAAACTATC 60.149 40.741 16.98 0.00 40.07 2.08
2612 3247 7.599245 CGTCCTTTAAAGAGTGTCAAACTATCT 59.401 37.037 16.98 0.00 40.07 1.98
2613 3248 8.927721 GTCCTTTAAAGAGTGTCAAACTATCTC 58.072 37.037 16.98 0.00 40.07 2.75
2614 3249 8.647796 TCCTTTAAAGAGTGTCAAACTATCTCA 58.352 33.333 16.98 0.00 40.07 3.27
2615 3250 9.273016 CCTTTAAAGAGTGTCAAACTATCTCAA 57.727 33.333 16.98 0.00 40.07 3.02
2618 3253 9.832445 TTAAAGAGTGTCAAACTATCTCAAAGT 57.168 29.630 0.00 0.00 40.07 2.66
2619 3254 8.738645 AAAGAGTGTCAAACTATCTCAAAGTT 57.261 30.769 0.00 0.00 40.07 2.66
2620 3255 8.738645 AAGAGTGTCAAACTATCTCAAAGTTT 57.261 30.769 0.00 0.00 45.64 2.66
2627 3262 6.787085 AAACTATCTCAAAGTTTGACCGAG 57.213 37.500 14.35 12.69 43.66 4.63
2628 3263 5.470047 ACTATCTCAAAGTTTGACCGAGT 57.530 39.130 14.35 13.26 35.46 4.18
2629 3264 5.855045 ACTATCTCAAAGTTTGACCGAGTT 58.145 37.500 14.35 3.34 35.46 3.01
2630 3265 6.289064 ACTATCTCAAAGTTTGACCGAGTTT 58.711 36.000 14.35 0.45 35.46 2.66
2631 3266 4.875544 TCTCAAAGTTTGACCGAGTTTG 57.124 40.909 14.35 2.86 38.28 2.93
2632 3267 4.258543 TCTCAAAGTTTGACCGAGTTTGT 58.741 39.130 14.35 0.00 38.17 2.83
2633 3268 4.094294 TCTCAAAGTTTGACCGAGTTTGTG 59.906 41.667 14.35 1.47 38.17 3.33
2634 3269 2.844122 AAGTTTGACCGAGTTTGTGC 57.156 45.000 0.00 0.00 0.00 4.57
2635 3270 1.745232 AGTTTGACCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
2636 3271 2.088423 AGTTTGACCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
2637 3272 2.490115 AGTTTGACCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
2638 3273 3.057174 AGTTTGACCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
2639 3274 3.577649 TTGACCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
2640 3275 3.791973 TGACCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
2641 3276 4.902443 TGACCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
2642 3277 5.446143 TGACCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
2643 3278 6.561737 TGACCGAGTTTGTGCAAAAATATA 57.438 33.333 5.11 0.00 31.33 0.86
2644 3279 7.151999 TGACCGAGTTTGTGCAAAAATATAT 57.848 32.000 5.11 0.00 31.33 0.86
2645 3280 7.247728 TGACCGAGTTTGTGCAAAAATATATC 58.752 34.615 5.11 1.66 31.33 1.63
2646 3281 7.094592 TGACCGAGTTTGTGCAAAAATATATCA 60.095 33.333 5.11 4.10 31.33 2.15
2647 3282 7.598278 ACCGAGTTTGTGCAAAAATATATCAA 58.402 30.769 5.11 0.00 31.33 2.57
2648 3283 8.250332 ACCGAGTTTGTGCAAAAATATATCAAT 58.750 29.630 5.11 0.00 31.33 2.57
2649 3284 8.533965 CCGAGTTTGTGCAAAAATATATCAATG 58.466 33.333 5.11 0.00 31.33 2.82
2650 3285 9.075519 CGAGTTTGTGCAAAAATATATCAATGT 57.924 29.630 5.11 0.00 31.33 2.71
2656 3291 9.702494 TGTGCAAAAATATATCAATGTTTGTGA 57.298 25.926 0.00 0.00 34.81 3.58
2719 3354 8.786898 TGAATCTAATGCTACTAATTTCATGGC 58.213 33.333 0.00 0.00 0.00 4.40
2720 3355 8.696043 AATCTAATGCTACTAATTTCATGGCA 57.304 30.769 0.00 0.00 0.00 4.92
2721 3356 8.874744 ATCTAATGCTACTAATTTCATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
2722 3357 9.964354 ATCTAATGCTACTAATTTCATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
2723 3358 9.791801 TCTAATGCTACTAATTTCATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
2752 3387 7.908827 TGATGTATTGTTGTACAAATACGGT 57.091 32.000 18.77 13.07 41.96 4.83
2753 3388 7.966111 TGATGTATTGTTGTACAAATACGGTC 58.034 34.615 18.77 18.30 41.96 4.79
2754 3389 7.603024 TGATGTATTGTTGTACAAATACGGTCA 59.397 33.333 20.59 20.59 41.96 4.02
2755 3390 7.725818 TGTATTGTTGTACAAATACGGTCAA 57.274 32.000 18.77 13.78 41.96 3.18
2756 3391 8.151141 TGTATTGTTGTACAAATACGGTCAAA 57.849 30.769 18.77 4.76 41.96 2.69
2757 3392 8.068977 TGTATTGTTGTACAAATACGGTCAAAC 58.931 33.333 18.77 13.45 41.96 2.93
2758 3393 6.432607 TTGTTGTACAAATACGGTCAAACA 57.567 33.333 10.51 0.00 34.76 2.83
2759 3394 6.621316 TGTTGTACAAATACGGTCAAACAT 57.379 33.333 10.51 0.00 33.60 2.71
2760 3395 7.725818 TGTTGTACAAATACGGTCAAACATA 57.274 32.000 10.51 0.00 33.60 2.29
2761 3396 8.325421 TGTTGTACAAATACGGTCAAACATAT 57.675 30.769 10.51 0.00 33.60 1.78
2762 3397 9.433153 TGTTGTACAAATACGGTCAAACATATA 57.567 29.630 10.51 0.00 33.60 0.86
2809 3444 6.494893 TGGAAATACATTCTTCAAAGGACG 57.505 37.500 0.00 0.00 38.18 4.79
2810 3445 5.414454 TGGAAATACATTCTTCAAAGGACGG 59.586 40.000 0.00 0.00 38.18 4.79
2811 3446 5.646360 GGAAATACATTCTTCAAAGGACGGA 59.354 40.000 0.00 0.00 38.18 4.69
2812 3447 6.150474 GGAAATACATTCTTCAAAGGACGGAA 59.850 38.462 0.00 0.00 38.18 4.30
2813 3448 6.743575 AATACATTCTTCAAAGGACGGAAG 57.256 37.500 0.00 0.00 41.42 3.46
2814 3449 3.412386 ACATTCTTCAAAGGACGGAAGG 58.588 45.455 0.00 0.00 40.65 3.46
2815 3450 3.072476 ACATTCTTCAAAGGACGGAAGGA 59.928 43.478 0.00 0.00 40.65 3.36
2816 3451 3.402628 TTCTTCAAAGGACGGAAGGAG 57.597 47.619 0.00 0.00 40.65 3.69
2817 3452 2.326428 TCTTCAAAGGACGGAAGGAGT 58.674 47.619 0.00 0.00 40.65 3.85
2818 3453 3.503365 TCTTCAAAGGACGGAAGGAGTA 58.497 45.455 0.00 0.00 40.65 2.59
2819 3454 3.510360 TCTTCAAAGGACGGAAGGAGTAG 59.490 47.826 0.00 0.00 40.65 2.57
2820 3455 2.885616 TCAAAGGACGGAAGGAGTAGT 58.114 47.619 0.00 0.00 0.00 2.73
2821 3456 2.824341 TCAAAGGACGGAAGGAGTAGTC 59.176 50.000 0.00 0.00 0.00 2.59
2822 3457 2.826725 CAAAGGACGGAAGGAGTAGTCT 59.173 50.000 0.00 0.00 34.34 3.24
2823 3458 2.903375 AGGACGGAAGGAGTAGTCTT 57.097 50.000 0.00 0.00 34.34 3.01
2824 3459 2.725637 AGGACGGAAGGAGTAGTCTTC 58.274 52.381 0.00 0.00 39.73 2.87
2831 3466 3.536570 GAAGGAGTAGTCTTCCCAATGC 58.463 50.000 0.00 0.00 35.76 3.56
2832 3467 2.551270 AGGAGTAGTCTTCCCAATGCA 58.449 47.619 0.00 0.00 0.00 3.96
2833 3468 3.118531 AGGAGTAGTCTTCCCAATGCAT 58.881 45.455 0.00 0.00 0.00 3.96
2834 3469 4.298626 AGGAGTAGTCTTCCCAATGCATA 58.701 43.478 0.00 0.00 0.00 3.14
2835 3470 4.910304 AGGAGTAGTCTTCCCAATGCATAT 59.090 41.667 0.00 0.00 0.00 1.78
2836 3471 4.999950 GGAGTAGTCTTCCCAATGCATATG 59.000 45.833 0.00 0.00 0.00 1.78
2837 3472 4.392940 AGTAGTCTTCCCAATGCATATGC 58.607 43.478 21.09 21.09 42.50 3.14
2838 3473 3.589951 AGTCTTCCCAATGCATATGCT 57.410 42.857 27.13 11.10 42.66 3.79
2839 3474 3.907221 AGTCTTCCCAATGCATATGCTT 58.093 40.909 27.13 18.93 42.66 3.91
2840 3475 5.052693 AGTCTTCCCAATGCATATGCTTA 57.947 39.130 27.13 9.73 42.66 3.09
2841 3476 5.448654 AGTCTTCCCAATGCATATGCTTAA 58.551 37.500 27.13 8.96 42.66 1.85
2842 3477 5.300286 AGTCTTCCCAATGCATATGCTTAAC 59.700 40.000 27.13 12.27 42.66 2.01
2843 3478 5.300286 GTCTTCCCAATGCATATGCTTAACT 59.700 40.000 27.13 4.94 42.66 2.24
2844 3479 5.893255 TCTTCCCAATGCATATGCTTAACTT 59.107 36.000 27.13 10.79 42.66 2.66
2845 3480 6.380846 TCTTCCCAATGCATATGCTTAACTTT 59.619 34.615 27.13 9.36 42.66 2.66
2846 3481 6.543430 TCCCAATGCATATGCTTAACTTTT 57.457 33.333 27.13 3.50 42.66 2.27
2847 3482 7.652524 TCCCAATGCATATGCTTAACTTTTA 57.347 32.000 27.13 5.16 42.66 1.52
2848 3483 8.248904 TCCCAATGCATATGCTTAACTTTTAT 57.751 30.769 27.13 7.35 42.66 1.40
2849 3484 9.360901 TCCCAATGCATATGCTTAACTTTTATA 57.639 29.630 27.13 3.88 42.66 0.98
2850 3485 9.630098 CCCAATGCATATGCTTAACTTTTATAG 57.370 33.333 27.13 5.77 42.66 1.31
2851 3486 9.132521 CCAATGCATATGCTTAACTTTTATAGC 57.867 33.333 27.13 0.00 42.66 2.97
2852 3487 9.903682 CAATGCATATGCTTAACTTTTATAGCT 57.096 29.630 27.13 0.00 42.66 3.32
2862 3497 8.966069 CTTAACTTTTATAGCTAAGCTTCCCT 57.034 34.615 0.00 2.84 40.44 4.20
2863 3498 8.959705 TTAACTTTTATAGCTAAGCTTCCCTC 57.040 34.615 0.00 0.00 40.44 4.30
2864 3499 6.561519 ACTTTTATAGCTAAGCTTCCCTCA 57.438 37.500 0.00 0.00 40.44 3.86
2865 3500 7.142995 ACTTTTATAGCTAAGCTTCCCTCAT 57.857 36.000 0.00 0.00 40.44 2.90
2866 3501 8.263854 ACTTTTATAGCTAAGCTTCCCTCATA 57.736 34.615 0.00 0.00 40.44 2.15
2867 3502 8.714906 ACTTTTATAGCTAAGCTTCCCTCATAA 58.285 33.333 0.00 0.00 40.44 1.90
2868 3503 9.561069 CTTTTATAGCTAAGCTTCCCTCATAAA 57.439 33.333 0.00 5.76 40.44 1.40
2869 3504 9.914834 TTTTATAGCTAAGCTTCCCTCATAAAA 57.085 29.630 0.00 11.04 40.44 1.52
2872 3507 6.705863 AGCTAAGCTTCCCTCATAAAATTG 57.294 37.500 0.00 0.00 33.89 2.32
2873 3508 6.190587 AGCTAAGCTTCCCTCATAAAATTGT 58.809 36.000 0.00 0.00 33.89 2.71
2874 3509 6.665248 AGCTAAGCTTCCCTCATAAAATTGTT 59.335 34.615 0.00 0.00 33.89 2.83
2875 3510 7.179160 AGCTAAGCTTCCCTCATAAAATTGTTT 59.821 33.333 0.00 0.00 33.89 2.83
2876 3511 8.466798 GCTAAGCTTCCCTCATAAAATTGTTTA 58.533 33.333 0.00 0.00 33.76 2.01
2911 3546 8.988060 TCTCTTTCATATATTGGTTGGTAGTCA 58.012 33.333 0.00 0.00 0.00 3.41
2912 3547 9.784531 CTCTTTCATATATTGGTTGGTAGTCAT 57.215 33.333 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.619363 TGGTGGGGATTGGAGGAGG 60.619 63.158 0.00 0.00 0.00 4.30
37 38 1.609783 GTGGTGGGGATTGGAGGAG 59.390 63.158 0.00 0.00 0.00 3.69
38 39 1.928567 GGTGGTGGGGATTGGAGGA 60.929 63.158 0.00 0.00 0.00 3.71
218 221 2.046892 CACACCTCCAAGGCTCCG 60.047 66.667 0.00 0.00 39.63 4.63
314 322 2.721797 CGCGAAATCCAAACGAAGTCTG 60.722 50.000 0.00 0.00 45.00 3.51
324 351 1.717194 GAGGTACACGCGAAATCCAA 58.283 50.000 15.93 0.00 0.00 3.53
338 365 2.671396 GCAGAAAAGAAATCGCGAGGTA 59.329 45.455 16.66 0.00 0.00 3.08
402 434 4.444306 CCGAGACCATAAGCCATTAGGAAA 60.444 45.833 0.00 0.00 36.89 3.13
437 469 8.455903 ACAAGTAGCAGATAAAACATGCATAT 57.544 30.769 0.00 0.00 42.45 1.78
458 490 3.058432 TCGAGAAGGAACTGACGTACAAG 60.058 47.826 0.00 0.00 40.86 3.16
459 491 2.880268 TCGAGAAGGAACTGACGTACAA 59.120 45.455 0.00 0.00 40.86 2.41
481 514 5.491070 ACTACTGCACATGAGCTAATGAAA 58.509 37.500 18.56 1.86 34.99 2.69
524 605 4.710197 TCCTGGGCCTATTAGGATGATA 57.290 45.455 14.16 0.00 37.67 2.15
550 633 9.136323 CCTAAGCTTTGGGTGATAAATAATCTT 57.864 33.333 18.10 0.00 35.45 2.40
606 696 1.098050 CAAGGGTTCCACATAGCTGC 58.902 55.000 0.00 0.00 0.00 5.25
711 803 4.924625 TCTAGATGTGCCCTAGATAGACC 58.075 47.826 0.00 0.00 38.08 3.85
783 895 6.657541 TCATGCGGGTAATCTTCTTTTAGTTT 59.342 34.615 0.00 0.00 0.00 2.66
786 898 6.677781 TTCATGCGGGTAATCTTCTTTTAG 57.322 37.500 0.00 0.00 0.00 1.85
787 899 7.054124 AGATTCATGCGGGTAATCTTCTTTTA 58.946 34.615 1.71 0.00 36.76 1.52
788 900 5.888161 AGATTCATGCGGGTAATCTTCTTTT 59.112 36.000 1.71 0.00 36.76 2.27
789 901 5.440610 AGATTCATGCGGGTAATCTTCTTT 58.559 37.500 1.71 0.00 36.76 2.52
810 922 8.556589 TCCTATTCCATTGATTTTAGGTGAAGA 58.443 33.333 0.00 0.00 0.00 2.87
860 972 6.589523 GCTAAAGCACATCTAGGTCAGATATG 59.410 42.308 0.00 0.00 40.57 1.78
1221 1353 0.179065 CGAAGATCTGCATGCCTCCA 60.179 55.000 16.68 0.00 0.00 3.86
1658 2264 2.180159 TAAGGCGGAGGACAAGGTGC 62.180 60.000 0.00 0.00 0.00 5.01
1859 2465 3.907474 TGGACTCCTTCTGGATGTTGTAA 59.093 43.478 0.00 0.00 42.29 2.41
2027 2634 1.818674 CCATACCAGCAACTGTTTCCC 59.181 52.381 0.00 0.00 0.00 3.97
2064 2671 7.887996 TCAACAAGCATATTGGTTCAAATTC 57.112 32.000 0.00 0.00 35.69 2.17
2087 2694 7.222805 GGAAGAAACAAACCAGAAGAAACATTC 59.777 37.037 0.00 0.00 0.00 2.67
2089 2696 6.154363 TGGAAGAAACAAACCAGAAGAAACAT 59.846 34.615 0.00 0.00 0.00 2.71
2091 2698 5.961272 TGGAAGAAACAAACCAGAAGAAAC 58.039 37.500 0.00 0.00 0.00 2.78
2099 2706 6.994221 TGTAAAAACTGGAAGAAACAAACCA 58.006 32.000 0.00 0.00 37.43 3.67
2100 2707 7.601130 AGTTGTAAAAACTGGAAGAAACAAACC 59.399 33.333 0.00 0.00 37.43 3.27
2101 2708 8.528917 AGTTGTAAAAACTGGAAGAAACAAAC 57.471 30.769 0.00 0.00 37.43 2.93
2104 2711 7.121463 TGCTAGTTGTAAAAACTGGAAGAAACA 59.879 33.333 5.86 0.00 37.43 2.83
2105 2712 7.477494 TGCTAGTTGTAAAAACTGGAAGAAAC 58.523 34.615 5.86 0.00 37.43 2.78
2108 2733 6.260050 CACTGCTAGTTGTAAAAACTGGAAGA 59.740 38.462 14.47 0.00 36.75 2.87
2138 2770 0.109086 CACAGAGAGCCACTACGGTG 60.109 60.000 0.00 0.00 42.65 4.94
2142 2774 2.275318 GCAATCACAGAGAGCCACTAC 58.725 52.381 0.00 0.00 0.00 2.73
2154 2786 3.514706 ACAGCCCATAAAATGCAATCACA 59.485 39.130 0.00 0.00 0.00 3.58
2155 2787 4.127566 ACAGCCCATAAAATGCAATCAC 57.872 40.909 0.00 0.00 0.00 3.06
2225 2859 7.009907 GCAGCATTCCAAGATAAAAGAAACATC 59.990 37.037 0.00 0.00 0.00 3.06
2235 2869 3.689347 ACACAGCAGCATTCCAAGATAA 58.311 40.909 0.00 0.00 0.00 1.75
2242 2876 3.308438 AATCAAACACAGCAGCATTCC 57.692 42.857 0.00 0.00 0.00 3.01
2270 2904 2.163010 GCAAGCAAGCAGAGCAAATAGA 59.837 45.455 0.00 0.00 0.00 1.98
2299 2933 1.391485 CGAGCAAAGACACTCCAATCG 59.609 52.381 0.00 0.00 0.00 3.34
2379 3014 6.151144 ACGAATTTTTCCTAAGGAATCCAGTG 59.849 38.462 0.61 0.00 41.71 3.66
2433 3068 8.857694 ACGTCTTATAAAAATGAAAAGAGGGA 57.142 30.769 0.00 0.00 36.74 4.20
2434 3069 9.908152 AAACGTCTTATAAAAATGAAAAGAGGG 57.092 29.630 0.00 0.00 36.74 4.30
2461 3096 5.936686 AACAGTTCAATGTCAGATGTCTG 57.063 39.130 3.61 3.61 45.08 3.51
2462 3097 6.543465 TCAAAACAGTTCAATGTCAGATGTCT 59.457 34.615 0.00 0.00 31.50 3.41
2463 3098 6.634436 GTCAAAACAGTTCAATGTCAGATGTC 59.366 38.462 0.00 0.00 31.50 3.06
2464 3099 6.319658 AGTCAAAACAGTTCAATGTCAGATGT 59.680 34.615 0.00 0.00 31.50 3.06
2465 3100 6.635641 CAGTCAAAACAGTTCAATGTCAGATG 59.364 38.462 0.00 0.00 31.50 2.90
2466 3101 6.319658 ACAGTCAAAACAGTTCAATGTCAGAT 59.680 34.615 0.00 0.00 31.50 2.90
2467 3102 5.647658 ACAGTCAAAACAGTTCAATGTCAGA 59.352 36.000 0.00 0.00 31.50 3.27
2468 3103 5.883661 ACAGTCAAAACAGTTCAATGTCAG 58.116 37.500 0.00 0.00 31.50 3.51
2469 3104 5.895636 ACAGTCAAAACAGTTCAATGTCA 57.104 34.783 0.00 0.00 31.50 3.58
2470 3105 6.092748 ACAACAGTCAAAACAGTTCAATGTC 58.907 36.000 0.00 0.00 33.32 3.06
2471 3106 6.024552 ACAACAGTCAAAACAGTTCAATGT 57.975 33.333 0.00 0.00 33.32 2.71
2472 3107 6.252015 CAGACAACAGTCAAAACAGTTCAATG 59.748 38.462 0.00 0.00 33.32 2.82
2473 3108 6.150976 TCAGACAACAGTCAAAACAGTTCAAT 59.849 34.615 0.00 0.00 33.32 2.57
2474 3109 5.471797 TCAGACAACAGTCAAAACAGTTCAA 59.528 36.000 0.00 0.00 33.32 2.69
2475 3110 5.000591 TCAGACAACAGTCAAAACAGTTCA 58.999 37.500 0.00 0.00 33.32 3.18
2476 3111 5.545658 TCAGACAACAGTCAAAACAGTTC 57.454 39.130 0.00 0.00 33.32 3.01
2477 3112 5.957842 TTCAGACAACAGTCAAAACAGTT 57.042 34.783 0.00 0.00 35.71 3.16
2478 3113 5.957842 TTTCAGACAACAGTCAAAACAGT 57.042 34.783 0.00 0.00 34.69 3.55
2479 3114 5.745294 CCATTTCAGACAACAGTCAAAACAG 59.255 40.000 0.00 0.00 34.69 3.16
2480 3115 5.649557 CCATTTCAGACAACAGTCAAAACA 58.350 37.500 0.00 0.00 34.69 2.83
2481 3116 4.504097 GCCATTTCAGACAACAGTCAAAAC 59.496 41.667 0.00 0.00 34.69 2.43
2482 3117 4.402155 AGCCATTTCAGACAACAGTCAAAA 59.598 37.500 0.00 0.00 34.69 2.44
2483 3118 3.953612 AGCCATTTCAGACAACAGTCAAA 59.046 39.130 0.00 0.00 34.69 2.69
2484 3119 3.554934 AGCCATTTCAGACAACAGTCAA 58.445 40.909 0.00 0.00 34.69 3.18
2485 3120 3.213206 AGCCATTTCAGACAACAGTCA 57.787 42.857 0.00 0.00 34.69 3.41
2486 3121 4.065088 TGTAGCCATTTCAGACAACAGTC 58.935 43.478 0.00 0.00 0.00 3.51
2487 3122 4.067896 CTGTAGCCATTTCAGACAACAGT 58.932 43.478 0.00 0.00 0.00 3.55
2488 3123 3.120060 GCTGTAGCCATTTCAGACAACAG 60.120 47.826 0.00 0.00 36.92 3.16
2489 3124 2.813754 GCTGTAGCCATTTCAGACAACA 59.186 45.455 0.00 0.00 34.31 3.33
2490 3125 2.159653 CGCTGTAGCCATTTCAGACAAC 60.160 50.000 0.00 0.00 37.91 3.32
2491 3126 2.076100 CGCTGTAGCCATTTCAGACAA 58.924 47.619 0.00 0.00 37.91 3.18
2492 3127 1.001974 ACGCTGTAGCCATTTCAGACA 59.998 47.619 0.00 0.00 37.91 3.41
2493 3128 1.661112 GACGCTGTAGCCATTTCAGAC 59.339 52.381 0.00 0.00 37.91 3.51
2494 3129 1.550524 AGACGCTGTAGCCATTTCAGA 59.449 47.619 0.00 0.00 37.91 3.27
2495 3130 2.015736 AGACGCTGTAGCCATTTCAG 57.984 50.000 0.00 0.00 37.91 3.02
2496 3131 2.472695 AAGACGCTGTAGCCATTTCA 57.527 45.000 0.00 0.00 37.91 2.69
2497 3132 5.177696 CCTTATAAGACGCTGTAGCCATTTC 59.822 44.000 14.28 0.00 37.91 2.17
2498 3133 5.057149 CCTTATAAGACGCTGTAGCCATTT 58.943 41.667 14.28 0.00 37.91 2.32
2499 3134 4.632153 CCTTATAAGACGCTGTAGCCATT 58.368 43.478 14.28 0.00 37.91 3.16
2500 3135 3.555168 GCCTTATAAGACGCTGTAGCCAT 60.555 47.826 14.28 0.00 37.91 4.40
2501 3136 2.223971 GCCTTATAAGACGCTGTAGCCA 60.224 50.000 14.28 0.00 37.91 4.75
2502 3137 2.036089 AGCCTTATAAGACGCTGTAGCC 59.964 50.000 14.28 0.00 37.91 3.93
2503 3138 3.372660 AGCCTTATAAGACGCTGTAGC 57.627 47.619 14.28 6.07 37.78 3.58
2504 3139 6.238130 GGAAAAAGCCTTATAAGACGCTGTAG 60.238 42.308 14.28 0.00 0.00 2.74
2505 3140 5.583457 GGAAAAAGCCTTATAAGACGCTGTA 59.417 40.000 14.28 0.00 0.00 2.74
2506 3141 4.395231 GGAAAAAGCCTTATAAGACGCTGT 59.605 41.667 14.28 7.26 0.00 4.40
2507 3142 4.394920 TGGAAAAAGCCTTATAAGACGCTG 59.605 41.667 14.28 0.00 0.00 5.18
2508 3143 4.585879 TGGAAAAAGCCTTATAAGACGCT 58.414 39.130 14.28 11.67 0.00 5.07
2509 3144 4.957759 TGGAAAAAGCCTTATAAGACGC 57.042 40.909 14.28 9.57 0.00 5.19
2510 3145 5.743872 GCATTGGAAAAAGCCTTATAAGACG 59.256 40.000 14.28 0.00 0.00 4.18
2511 3146 6.630071 TGCATTGGAAAAAGCCTTATAAGAC 58.370 36.000 14.28 1.90 30.97 3.01
2512 3147 6.849085 TGCATTGGAAAAAGCCTTATAAGA 57.151 33.333 14.28 0.00 30.97 2.10
2513 3148 7.473027 CATGCATTGGAAAAAGCCTTATAAG 57.527 36.000 5.43 5.43 30.97 1.73
2534 3169 0.035152 TGCACCTCTAAGCACCCATG 60.035 55.000 0.00 0.00 35.51 3.66
2535 3170 0.698238 TTGCACCTCTAAGCACCCAT 59.302 50.000 0.00 0.00 41.05 4.00
2536 3171 0.036732 CTTGCACCTCTAAGCACCCA 59.963 55.000 0.00 0.00 41.05 4.51
2537 3172 0.036875 ACTTGCACCTCTAAGCACCC 59.963 55.000 0.00 0.00 41.05 4.61
2538 3173 1.160137 CACTTGCACCTCTAAGCACC 58.840 55.000 0.00 0.00 41.05 5.01
2539 3174 0.519077 GCACTTGCACCTCTAAGCAC 59.481 55.000 0.00 0.00 41.05 4.40
2540 3175 2.932663 GCACTTGCACCTCTAAGCA 58.067 52.632 0.00 0.00 41.59 3.91
2551 3186 9.196552 AGTTTCTAAGATTTTTAATGCACTTGC 57.803 29.630 0.00 0.00 42.50 4.01
2561 3196 9.649167 CGGAAGGAGTAGTTTCTAAGATTTTTA 57.351 33.333 0.00 0.00 0.00 1.52
2562 3197 8.155510 ACGGAAGGAGTAGTTTCTAAGATTTTT 58.844 33.333 0.00 0.00 0.00 1.94
2563 3198 7.677892 ACGGAAGGAGTAGTTTCTAAGATTTT 58.322 34.615 0.00 0.00 0.00 1.82
2564 3199 7.242322 ACGGAAGGAGTAGTTTCTAAGATTT 57.758 36.000 0.00 0.00 0.00 2.17
2565 3200 6.127394 GGACGGAAGGAGTAGTTTCTAAGATT 60.127 42.308 0.00 0.00 0.00 2.40
2566 3201 5.360429 GGACGGAAGGAGTAGTTTCTAAGAT 59.640 44.000 0.00 0.00 0.00 2.40
2567 3202 4.704057 GGACGGAAGGAGTAGTTTCTAAGA 59.296 45.833 0.00 0.00 0.00 2.10
2568 3203 4.705991 AGGACGGAAGGAGTAGTTTCTAAG 59.294 45.833 0.00 0.00 0.00 2.18
2569 3204 4.670765 AGGACGGAAGGAGTAGTTTCTAA 58.329 43.478 0.00 0.00 0.00 2.10
2570 3205 4.313020 AGGACGGAAGGAGTAGTTTCTA 57.687 45.455 0.00 0.00 0.00 2.10
2571 3206 3.172471 AGGACGGAAGGAGTAGTTTCT 57.828 47.619 0.00 0.00 0.00 2.52
2572 3207 3.957591 AAGGACGGAAGGAGTAGTTTC 57.042 47.619 0.00 0.00 0.00 2.78
2573 3208 5.813513 TTAAAGGACGGAAGGAGTAGTTT 57.186 39.130 0.00 0.00 0.00 2.66
2574 3209 5.541484 TCTTTAAAGGACGGAAGGAGTAGTT 59.459 40.000 15.13 0.00 0.00 2.24
2575 3210 5.082425 TCTTTAAAGGACGGAAGGAGTAGT 58.918 41.667 15.13 0.00 0.00 2.73
2576 3211 5.185442 ACTCTTTAAAGGACGGAAGGAGTAG 59.815 44.000 15.13 3.22 37.64 2.57
2577 3212 5.047519 CACTCTTTAAAGGACGGAAGGAGTA 60.048 44.000 15.13 0.00 37.40 2.59
2578 3213 3.902467 ACTCTTTAAAGGACGGAAGGAGT 59.098 43.478 15.13 5.41 35.42 3.85
2579 3214 4.246458 CACTCTTTAAAGGACGGAAGGAG 58.754 47.826 15.13 4.81 33.72 3.69
2580 3215 3.644738 ACACTCTTTAAAGGACGGAAGGA 59.355 43.478 15.13 0.00 0.00 3.36
2581 3216 3.995048 GACACTCTTTAAAGGACGGAAGG 59.005 47.826 15.13 2.03 0.00 3.46
2582 3217 4.628074 TGACACTCTTTAAAGGACGGAAG 58.372 43.478 15.13 6.59 0.00 3.46
2583 3218 4.675976 TGACACTCTTTAAAGGACGGAA 57.324 40.909 15.13 0.00 0.00 4.30
2584 3219 4.675976 TTGACACTCTTTAAAGGACGGA 57.324 40.909 15.13 0.00 0.00 4.69
2585 3220 4.814771 AGTTTGACACTCTTTAAAGGACGG 59.185 41.667 15.13 5.64 0.00 4.79
2586 3221 5.986004 AGTTTGACACTCTTTAAAGGACG 57.014 39.130 15.13 6.90 0.00 4.79
2587 3222 8.834749 AGATAGTTTGACACTCTTTAAAGGAC 57.165 34.615 15.13 1.11 36.88 3.85
2588 3223 8.647796 TGAGATAGTTTGACACTCTTTAAAGGA 58.352 33.333 15.13 1.82 36.88 3.36
2589 3224 8.833231 TGAGATAGTTTGACACTCTTTAAAGG 57.167 34.615 15.13 8.48 36.88 3.11
2592 3227 9.832445 ACTTTGAGATAGTTTGACACTCTTTAA 57.168 29.630 0.00 0.00 36.88 1.52
2593 3228 9.832445 AACTTTGAGATAGTTTGACACTCTTTA 57.168 29.630 0.00 0.00 36.88 1.85
2594 3229 8.738645 AACTTTGAGATAGTTTGACACTCTTT 57.261 30.769 0.00 0.00 36.88 2.52
2595 3230 8.738645 AAACTTTGAGATAGTTTGACACTCTT 57.261 30.769 0.00 0.00 42.54 2.85
2604 3239 6.289064 ACTCGGTCAAACTTTGAGATAGTTT 58.711 36.000 4.36 0.00 44.38 2.66
2605 3240 5.855045 ACTCGGTCAAACTTTGAGATAGTT 58.145 37.500 4.36 0.00 41.01 2.24
2606 3241 5.470047 ACTCGGTCAAACTTTGAGATAGT 57.530 39.130 4.36 5.79 41.01 2.12
2607 3242 6.202954 ACAAACTCGGTCAAACTTTGAGATAG 59.797 38.462 4.36 5.24 41.01 2.08
2608 3243 6.018262 CACAAACTCGGTCAAACTTTGAGATA 60.018 38.462 4.36 0.00 41.01 1.98
2609 3244 4.881850 ACAAACTCGGTCAAACTTTGAGAT 59.118 37.500 4.36 0.00 41.01 2.75
2610 3245 4.094294 CACAAACTCGGTCAAACTTTGAGA 59.906 41.667 4.36 0.00 41.01 3.27
2611 3246 4.342772 CACAAACTCGGTCAAACTTTGAG 58.657 43.478 4.36 0.00 41.01 3.02
2612 3247 3.426963 GCACAAACTCGGTCAAACTTTGA 60.427 43.478 0.00 0.00 37.33 2.69
2613 3248 2.851824 GCACAAACTCGGTCAAACTTTG 59.148 45.455 0.00 0.00 0.00 2.77
2614 3249 2.490115 TGCACAAACTCGGTCAAACTTT 59.510 40.909 0.00 0.00 0.00 2.66
2615 3250 2.088423 TGCACAAACTCGGTCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
2616 3251 1.745232 TGCACAAACTCGGTCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
2617 3252 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
2618 3253 3.577649 TTTTGCACAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
2619 3254 3.577649 TTTTTGCACAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
2620 3255 3.791973 ATTTTTGCACAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
2621 3256 7.247728 TGATATATTTTTGCACAAACTCGGTC 58.752 34.615 0.00 0.00 0.00 4.79
2622 3257 7.151999 TGATATATTTTTGCACAAACTCGGT 57.848 32.000 0.00 0.00 0.00 4.69
2623 3258 8.533965 CATTGATATATTTTTGCACAAACTCGG 58.466 33.333 0.00 0.00 0.00 4.63
2624 3259 9.075519 ACATTGATATATTTTTGCACAAACTCG 57.924 29.630 0.00 0.00 0.00 4.18
2630 3265 9.702494 TCACAAACATTGATATATTTTTGCACA 57.298 25.926 0.00 0.00 0.00 4.57
2693 3328 8.786898 GCCATGAAATTAGTAGCATTAGATTCA 58.213 33.333 0.00 0.00 0.00 2.57
2694 3329 8.786898 TGCCATGAAATTAGTAGCATTAGATTC 58.213 33.333 0.00 0.00 0.00 2.52
2695 3330 8.696043 TGCCATGAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
2696 3331 8.874744 ATGCCATGAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
2697 3332 9.791801 TTATGCCATGAAATTAGTAGCATTAGA 57.208 29.630 5.77 0.00 39.89 2.10
2726 3361 8.952278 ACCGTATTTGTACAACAATACATCAAT 58.048 29.630 21.76 8.54 38.00 2.57
2727 3362 8.325421 ACCGTATTTGTACAACAATACATCAA 57.675 30.769 21.76 2.52 38.00 2.57
2728 3363 7.603024 TGACCGTATTTGTACAACAATACATCA 59.397 33.333 21.76 20.30 38.00 3.07
2729 3364 7.966111 TGACCGTATTTGTACAACAATACATC 58.034 34.615 21.76 18.81 38.00 3.06
2730 3365 7.908827 TGACCGTATTTGTACAACAATACAT 57.091 32.000 21.76 13.57 38.00 2.29
2731 3366 7.725818 TTGACCGTATTTGTACAACAATACA 57.274 32.000 21.76 10.29 38.00 2.29
2732 3367 8.068977 TGTTTGACCGTATTTGTACAACAATAC 58.931 33.333 8.07 13.11 38.00 1.89
2733 3368 8.151141 TGTTTGACCGTATTTGTACAACAATA 57.849 30.769 8.07 1.71 38.00 1.90
2734 3369 7.028926 TGTTTGACCGTATTTGTACAACAAT 57.971 32.000 8.07 2.77 38.00 2.71
2735 3370 6.432607 TGTTTGACCGTATTTGTACAACAA 57.567 33.333 8.07 4.68 36.11 2.83
2736 3371 6.621316 ATGTTTGACCGTATTTGTACAACA 57.379 33.333 8.07 0.00 0.00 3.33
2783 3418 8.673711 CGTCCTTTGAAGAATGTATTTCCAATA 58.326 33.333 0.00 0.00 34.67 1.90
2784 3419 7.362920 CCGTCCTTTGAAGAATGTATTTCCAAT 60.363 37.037 0.00 0.00 34.67 3.16
2785 3420 6.072175 CCGTCCTTTGAAGAATGTATTTCCAA 60.072 38.462 0.00 0.00 34.67 3.53
2786 3421 5.414454 CCGTCCTTTGAAGAATGTATTTCCA 59.586 40.000 0.00 0.00 34.67 3.53
2787 3422 5.646360 TCCGTCCTTTGAAGAATGTATTTCC 59.354 40.000 0.00 0.00 34.67 3.13
2788 3423 6.737254 TCCGTCCTTTGAAGAATGTATTTC 57.263 37.500 0.00 0.00 34.31 2.17
2789 3424 6.151144 CCTTCCGTCCTTTGAAGAATGTATTT 59.849 38.462 0.00 0.00 40.30 1.40
2790 3425 5.648092 CCTTCCGTCCTTTGAAGAATGTATT 59.352 40.000 0.00 0.00 40.30 1.89
2791 3426 5.045869 TCCTTCCGTCCTTTGAAGAATGTAT 60.046 40.000 0.00 0.00 40.30 2.29
2792 3427 4.285003 TCCTTCCGTCCTTTGAAGAATGTA 59.715 41.667 0.00 0.00 40.30 2.29
2793 3428 3.072476 TCCTTCCGTCCTTTGAAGAATGT 59.928 43.478 0.00 0.00 40.30 2.71
2794 3429 3.674997 TCCTTCCGTCCTTTGAAGAATG 58.325 45.455 0.00 0.00 40.30 2.67
2795 3430 3.328050 ACTCCTTCCGTCCTTTGAAGAAT 59.672 43.478 0.00 0.00 40.30 2.40
2796 3431 2.704065 ACTCCTTCCGTCCTTTGAAGAA 59.296 45.455 0.00 0.00 40.30 2.52
2797 3432 2.326428 ACTCCTTCCGTCCTTTGAAGA 58.674 47.619 0.00 0.00 40.30 2.87
2798 3433 2.841442 ACTCCTTCCGTCCTTTGAAG 57.159 50.000 0.00 0.00 38.14 3.02
2799 3434 3.236896 ACTACTCCTTCCGTCCTTTGAA 58.763 45.455 0.00 0.00 0.00 2.69
2800 3435 2.824341 GACTACTCCTTCCGTCCTTTGA 59.176 50.000 0.00 0.00 0.00 2.69
2801 3436 2.826725 AGACTACTCCTTCCGTCCTTTG 59.173 50.000 0.00 0.00 0.00 2.77
2802 3437 3.172471 AGACTACTCCTTCCGTCCTTT 57.828 47.619 0.00 0.00 0.00 3.11
2803 3438 2.903375 AGACTACTCCTTCCGTCCTT 57.097 50.000 0.00 0.00 0.00 3.36
2804 3439 2.621147 GGAAGACTACTCCTTCCGTCCT 60.621 54.545 6.21 0.00 46.88 3.85
2805 3440 1.750206 GGAAGACTACTCCTTCCGTCC 59.250 57.143 6.21 0.00 46.88 4.79
2810 3445 3.055094 TGCATTGGGAAGACTACTCCTTC 60.055 47.826 0.00 0.00 39.32 3.46
2811 3446 2.912956 TGCATTGGGAAGACTACTCCTT 59.087 45.455 0.00 0.00 0.00 3.36
2812 3447 2.551270 TGCATTGGGAAGACTACTCCT 58.449 47.619 0.00 0.00 0.00 3.69
2813 3448 3.567478 ATGCATTGGGAAGACTACTCC 57.433 47.619 0.00 0.00 0.00 3.85
2814 3449 4.453819 GCATATGCATTGGGAAGACTACTC 59.546 45.833 22.84 0.00 41.59 2.59
2815 3450 4.103785 AGCATATGCATTGGGAAGACTACT 59.896 41.667 28.62 0.00 45.16 2.57
2816 3451 4.392940 AGCATATGCATTGGGAAGACTAC 58.607 43.478 28.62 0.00 45.16 2.73
2817 3452 4.712051 AGCATATGCATTGGGAAGACTA 57.288 40.909 28.62 0.00 45.16 2.59
2818 3453 3.589951 AGCATATGCATTGGGAAGACT 57.410 42.857 28.62 1.03 45.16 3.24
2819 3454 5.300286 AGTTAAGCATATGCATTGGGAAGAC 59.700 40.000 28.62 13.02 45.16 3.01
2820 3455 5.448654 AGTTAAGCATATGCATTGGGAAGA 58.551 37.500 28.62 0.00 45.16 2.87
2821 3456 5.779529 AGTTAAGCATATGCATTGGGAAG 57.220 39.130 28.62 0.00 45.16 3.46
2822 3457 6.543430 AAAGTTAAGCATATGCATTGGGAA 57.457 33.333 28.62 6.13 45.16 3.97
2823 3458 6.543430 AAAAGTTAAGCATATGCATTGGGA 57.457 33.333 28.62 6.32 45.16 4.37
2824 3459 9.630098 CTATAAAAGTTAAGCATATGCATTGGG 57.370 33.333 28.62 0.00 45.16 4.12
2825 3460 9.132521 GCTATAAAAGTTAAGCATATGCATTGG 57.867 33.333 28.62 3.49 45.16 3.16
2826 3461 9.903682 AGCTATAAAAGTTAAGCATATGCATTG 57.096 29.630 28.62 11.99 45.16 2.82
2837 3472 8.966069 AGGGAAGCTTAGCTATAAAAGTTAAG 57.034 34.615 7.32 4.76 46.38 1.85
2838 3473 8.545472 TGAGGGAAGCTTAGCTATAAAAGTTAA 58.455 33.333 7.32 0.00 38.25 2.01
2839 3474 8.086143 TGAGGGAAGCTTAGCTATAAAAGTTA 57.914 34.615 7.32 0.00 38.25 2.24
2840 3475 6.958767 TGAGGGAAGCTTAGCTATAAAAGTT 58.041 36.000 7.32 0.00 38.25 2.66
2841 3476 6.561519 TGAGGGAAGCTTAGCTATAAAAGT 57.438 37.500 7.32 0.00 38.25 2.66
2842 3477 9.561069 TTTATGAGGGAAGCTTAGCTATAAAAG 57.439 33.333 7.32 0.00 38.25 2.27
2843 3478 9.914834 TTTTATGAGGGAAGCTTAGCTATAAAA 57.085 29.630 18.55 18.55 38.25 1.52
2846 3481 9.507329 CAATTTTATGAGGGAAGCTTAGCTATA 57.493 33.333 7.32 0.00 38.25 1.31
2847 3482 8.001292 ACAATTTTATGAGGGAAGCTTAGCTAT 58.999 33.333 7.32 0.00 38.25 2.97
2848 3483 7.346471 ACAATTTTATGAGGGAAGCTTAGCTA 58.654 34.615 7.32 0.00 38.25 3.32
2849 3484 6.190587 ACAATTTTATGAGGGAAGCTTAGCT 58.809 36.000 0.00 0.00 42.56 3.32
2850 3485 6.456795 ACAATTTTATGAGGGAAGCTTAGC 57.543 37.500 0.00 0.00 0.00 3.09
2885 3520 8.988060 TGACTACCAACCAATATATGAAAGAGA 58.012 33.333 0.00 0.00 0.00 3.10
2886 3521 9.784531 ATGACTACCAACCAATATATGAAAGAG 57.215 33.333 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.