Multiple sequence alignment - TraesCS6A01G119600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G119600 chr6A 100.000 6769 0 0 2428 9196 91374766 91381534 0.000000e+00 12501.0
1 TraesCS6A01G119600 chr6A 100.000 2081 0 0 1 2081 91372339 91374419 0.000000e+00 3843.0
2 TraesCS6A01G119600 chr6D 97.056 4551 115 9 2611 7154 75275801 75280339 0.000000e+00 7644.0
3 TraesCS6A01G119600 chr6D 94.946 1840 76 9 7142 8972 75281961 75283792 0.000000e+00 2867.0
4 TraesCS6A01G119600 chr6D 85.228 941 72 31 298 1206 75273797 75274702 0.000000e+00 905.0
5 TraesCS6A01G119600 chr6D 83.633 501 22 20 1609 2081 75275178 75275646 5.140000e-112 416.0
6 TraesCS6A01G119600 chr6D 86.885 305 37 3 1 304 75164661 75164963 1.140000e-88 339.0
7 TraesCS6A01G119600 chr6D 94.712 208 4 4 1337 1542 75274954 75275156 5.360000e-82 316.0
8 TraesCS6A01G119600 chr6D 78.670 361 69 4 2705 3063 42411531 42411885 5.550000e-57 233.0
9 TraesCS6A01G119600 chr6D 93.617 94 5 1 2428 2521 75275705 75275797 1.250000e-28 139.0
10 TraesCS6A01G119600 chr6B 93.739 5031 205 24 2611 7611 149012285 149017235 0.000000e+00 7444.0
11 TraesCS6A01G119600 chr6B 94.560 772 30 5 7818 8580 149017716 149018484 0.000000e+00 1182.0
12 TraesCS6A01G119600 chr6B 92.160 574 24 7 8623 9196 149018757 149019309 0.000000e+00 791.0
13 TraesCS6A01G119600 chr6B 87.500 640 25 16 707 1336 149010703 149011297 0.000000e+00 688.0
14 TraesCS6A01G119600 chr6B 84.310 529 42 20 1337 1863 149011402 149011891 6.460000e-131 479.0
15 TraesCS6A01G119600 chr6B 96.347 219 5 2 7609 7824 149017347 149017565 3.160000e-94 357.0
16 TraesCS6A01G119600 chr6B 85.623 313 41 4 1 312 149006183 149006492 8.900000e-85 326.0
17 TraesCS6A01G119600 chr6B 76.261 476 82 20 2837 3306 94312465 94312015 3.340000e-54 224.0
18 TraesCS6A01G119600 chr6B 79.688 320 33 15 365 679 149010104 149010396 1.570000e-47 202.0
19 TraesCS6A01G119600 chr6B 90.476 84 8 0 2443 2526 149012203 149012286 2.710000e-20 111.0
20 TraesCS6A01G119600 chr6B 97.143 35 1 0 8310 8344 149018859 149018893 9.970000e-05 60.2
21 TraesCS6A01G119600 chr5B 83.196 3154 345 103 2628 5706 482172870 482175913 0.000000e+00 2717.0
22 TraesCS6A01G119600 chr5B 77.726 1513 215 63 4166 5656 481216899 481218311 0.000000e+00 815.0
23 TraesCS6A01G119600 chr5B 81.862 827 89 27 7151 7961 482176601 482177382 2.800000e-179 640.0
24 TraesCS6A01G119600 chr5B 80.491 692 93 30 7162 7846 482180236 482180892 8.300000e-135 492.0
25 TraesCS6A01G119600 chr5B 82.531 561 74 15 7945 8495 482177399 482177945 1.080000e-128 472.0
26 TraesCS6A01G119600 chr5B 79.909 657 89 20 6525 7149 481202703 481203348 8.470000e-120 442.0
27 TraesCS6A01G119600 chr5B 78.939 660 90 27 6525 7149 481834087 481834732 4.000000e-108 403.0
28 TraesCS6A01G119600 chr5B 80.000 550 76 24 5127 5657 481977075 481977609 8.720000e-100 375.0
29 TraesCS6A01G119600 chr5B 79.032 434 81 7 2702 3133 468846747 468846322 1.170000e-73 289.0
30 TraesCS6A01G119600 chr5B 82.428 313 44 4 6839 7149 481211041 481211344 7.080000e-66 263.0
31 TraesCS6A01G119600 chr5B 80.829 193 30 5 108 298 473777290 473777103 2.680000e-30 145.0
32 TraesCS6A01G119600 chr5B 88.235 119 8 4 1963 2081 498790298 498790410 4.480000e-28 137.0
33 TraesCS6A01G119600 chr5B 93.478 92 4 1 2522 2613 285935736 285935647 1.610000e-27 135.0
34 TraesCS6A01G119600 chr5B 87.395 119 14 1 1963 2081 498277409 498277526 1.610000e-27 135.0
35 TraesCS6A01G119600 chr5B 87.395 119 9 2 1963 2081 498535081 498535193 2.080000e-26 132.0
36 TraesCS6A01G119600 chr5B 87.395 119 9 4 1963 2081 498786913 498787025 2.080000e-26 132.0
37 TraesCS6A01G119600 chr5D 82.792 3173 357 107 2611 5706 402708302 402711362 0.000000e+00 2660.0
38 TraesCS6A01G119600 chr5D 82.057 1371 165 37 7151 8495 402712051 402713366 0.000000e+00 1094.0
39 TraesCS6A01G119600 chr5D 79.684 1521 191 56 4167 5657 402431314 402432746 0.000000e+00 989.0
40 TraesCS6A01G119600 chr5D 80.735 789 111 27 6843 7622 402721972 402722728 2.230000e-160 577.0
41 TraesCS6A01G119600 chr5D 85.102 537 72 6 4167 4701 402510102 402510632 8.120000e-150 542.0
42 TraesCS6A01G119600 chr5D 84.972 539 71 6 4167 4701 402505470 402506002 1.050000e-148 538.0
43 TraesCS6A01G119600 chr5D 84.916 537 74 5 4167 4701 402512867 402513398 3.780000e-148 536.0
44 TraesCS6A01G119600 chr5D 78.255 768 107 27 4905 5652 402424256 402424983 1.100000e-118 438.0
45 TraesCS6A01G119600 chr5D 79.782 643 84 23 6525 7136 402335933 402336560 8.530000e-115 425.0
46 TraesCS6A01G119600 chr5D 78.843 657 86 30 6525 7149 402432804 402433439 2.410000e-105 394.0
47 TraesCS6A01G119600 chr5D 82.314 458 49 21 5217 5657 402567617 402568059 1.460000e-97 368.0
48 TraesCS6A01G119600 chr5D 80.952 420 45 19 6525 6915 402349028 402349441 5.400000e-77 300.0
49 TraesCS6A01G119600 chr5D 92.632 95 5 2 2521 2613 40953180 40953274 1.610000e-27 135.0
50 TraesCS6A01G119600 chr5D 87.500 120 9 3 1962 2081 413603590 413603703 5.790000e-27 134.0
51 TraesCS6A01G119600 chr5D 78.469 209 40 5 108 315 3579667 3579463 2.080000e-26 132.0
52 TraesCS6A01G119600 chr5D 87.395 119 9 2 1963 2081 413573998 413574110 2.080000e-26 132.0
53 TraesCS6A01G119600 chr5D 85.714 119 11 2 1963 2081 413467801 413467913 4.510000e-23 121.0
54 TraesCS6A01G119600 chr5A 82.890 3156 348 107 2628 5706 508614964 508618004 0.000000e+00 2660.0
55 TraesCS6A01G119600 chr5A 79.065 1519 200 67 4171 5657 508209866 508211298 0.000000e+00 935.0
56 TraesCS6A01G119600 chr5A 78.296 1221 176 57 4167 5374 508167480 508168624 0.000000e+00 704.0
57 TraesCS6A01G119600 chr5A 80.374 963 128 37 4167 5117 508221386 508222299 0.000000e+00 675.0
58 TraesCS6A01G119600 chr5A 80.116 860 112 27 7663 8495 508619551 508620378 3.700000e-163 586.0
59 TraesCS6A01G119600 chr5A 87.129 404 38 6 7155 7558 508619000 508619389 6.550000e-121 446.0
60 TraesCS6A01G119600 chr5A 78.817 727 104 24 7717 8419 510707429 510706729 2.360000e-120 444.0
61 TraesCS6A01G119600 chr5A 83.122 474 62 9 3792 4265 492365007 492364552 5.140000e-112 416.0
62 TraesCS6A01G119600 chr5A 82.911 474 62 10 3792 4265 492387537 492387083 8.600000e-110 409.0
63 TraesCS6A01G119600 chr5A 95.506 89 3 1 2525 2613 659866963 659866876 3.460000e-29 141.0
64 TraesCS6A01G119600 chr5A 87.826 115 8 2 1963 2077 525930337 525930445 7.490000e-26 130.0
65 TraesCS6A01G119600 chr5A 86.555 119 10 2 1963 2081 526284124 526284236 9.690000e-25 126.0
66 TraesCS6A01G119600 chr7D 81.279 1314 178 44 7151 8442 101392952 101394219 0.000000e+00 1002.0
67 TraesCS6A01G119600 chr7D 81.059 623 76 24 6556 7149 101392292 101392901 8.410000e-125 459.0
68 TraesCS6A01G119600 chr7D 79.808 208 38 4 109 315 519241412 519241616 2.070000e-31 148.0
69 TraesCS6A01G119600 chrUn 80.015 1326 189 45 7151 8454 91484292 91483021 0.000000e+00 911.0
70 TraesCS6A01G119600 chrUn 80.556 612 73 24 6559 7136 91484953 91484354 6.600000e-116 429.0
71 TraesCS6A01G119600 chrUn 83.122 474 62 9 3792 4265 388412958 388412503 5.140000e-112 416.0
72 TraesCS6A01G119600 chrUn 86.751 317 42 0 3949 4265 307474845 307474529 4.080000e-93 353.0
73 TraesCS6A01G119600 chr7B 79.864 1321 196 45 7151 8448 57913519 57914792 0.000000e+00 902.0
74 TraesCS6A01G119600 chr7B 80.354 621 78 23 6562 7149 58243166 58243775 1.830000e-116 431.0
75 TraesCS6A01G119600 chr7B 80.258 466 75 9 8004 8457 58244676 58245136 1.480000e-87 335.0
76 TraesCS6A01G119600 chr7A 79.398 1330 193 46 7151 8457 91019617 91020888 0.000000e+00 863.0
77 TraesCS6A01G119600 chr7A 80.106 940 132 34 7438 8357 104800633 104801537 0.000000e+00 649.0
78 TraesCS6A01G119600 chr7A 81.356 708 101 19 7151 7846 105929969 105930657 1.750000e-151 547.0
79 TraesCS6A01G119600 chr7A 79.266 627 85 26 6556 7149 91018950 91019564 6.690000e-106 396.0
80 TraesCS6A01G119600 chr7A 78.000 650 87 29 6525 7133 104499060 104499694 3.160000e-94 357.0
81 TraesCS6A01G119600 chr7A 94.505 91 3 1 2525 2615 184126739 184126827 1.250000e-28 139.0
82 TraesCS6A01G119600 chr7A 81.013 158 22 6 446 597 706066066 706065911 1.620000e-22 119.0
83 TraesCS6A01G119600 chr2B 81.443 194 30 4 108 298 708350332 708350522 4.450000e-33 154.0
84 TraesCS6A01G119600 chr4A 95.506 89 4 0 2524 2612 601204545 601204633 9.630000e-30 143.0
85 TraesCS6A01G119600 chr3D 93.750 96 4 2 2524 2619 208025447 208025540 9.630000e-30 143.0
86 TraesCS6A01G119600 chr3D 92.708 96 5 2 2524 2619 203684632 203684539 4.480000e-28 137.0
87 TraesCS6A01G119600 chr2D 80.311 193 32 4 108 298 584464710 584464898 3.460000e-29 141.0
88 TraesCS6A01G119600 chr4D 93.548 93 4 1 2522 2614 28237897 28237807 4.480000e-28 137.0
89 TraesCS6A01G119600 chr4B 94.444 90 3 1 2524 2613 432817291 432817378 4.480000e-28 137.0
90 TraesCS6A01G119600 chr1B 80.423 189 29 6 113 298 524488335 524488518 4.480000e-28 137.0
91 TraesCS6A01G119600 chr1A 80.000 195 32 5 108 300 316322754 316322565 4.480000e-28 137.0
92 TraesCS6A01G119600 chr1A 81.437 167 23 6 437 597 584870897 584870733 7.490000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G119600 chr6A 91372339 91381534 9195 False 8172.000000 12501 100.000000 1 9196 2 chr6A.!!$F1 9195
1 TraesCS6A01G119600 chr6D 75273797 75283792 9995 False 2047.833333 7644 91.532000 298 8972 6 chr6D.!!$F3 8674
2 TraesCS6A01G119600 chr6B 149006183 149019309 13126 False 1164.020000 7444 90.154600 1 9196 10 chr6B.!!$F1 9195
3 TraesCS6A01G119600 chr5B 482172870 482180892 8022 False 1080.250000 2717 82.020000 2628 8495 4 chr5B.!!$F8 5867
4 TraesCS6A01G119600 chr5B 481216899 481218311 1412 False 815.000000 815 77.726000 4166 5656 1 chr5B.!!$F3 1490
5 TraesCS6A01G119600 chr5B 481202703 481203348 645 False 442.000000 442 79.909000 6525 7149 1 chr5B.!!$F1 624
6 TraesCS6A01G119600 chr5B 481834087 481834732 645 False 403.000000 403 78.939000 6525 7149 1 chr5B.!!$F4 624
7 TraesCS6A01G119600 chr5B 481977075 481977609 534 False 375.000000 375 80.000000 5127 5657 1 chr5B.!!$F5 530
8 TraesCS6A01G119600 chr5D 402708302 402713366 5064 False 1877.000000 2660 82.424500 2611 8495 2 chr5D.!!$F13 5884
9 TraesCS6A01G119600 chr5D 402431314 402433439 2125 False 691.500000 989 79.263500 4167 7149 2 chr5D.!!$F11 2982
10 TraesCS6A01G119600 chr5D 402721972 402722728 756 False 577.000000 577 80.735000 6843 7622 1 chr5D.!!$F7 779
11 TraesCS6A01G119600 chr5D 402510102 402513398 3296 False 539.000000 542 85.009000 4167 4701 2 chr5D.!!$F12 534
12 TraesCS6A01G119600 chr5D 402505470 402506002 532 False 538.000000 538 84.972000 4167 4701 1 chr5D.!!$F5 534
13 TraesCS6A01G119600 chr5D 402424256 402424983 727 False 438.000000 438 78.255000 4905 5652 1 chr5D.!!$F4 747
14 TraesCS6A01G119600 chr5D 402335933 402336560 627 False 425.000000 425 79.782000 6525 7136 1 chr5D.!!$F2 611
15 TraesCS6A01G119600 chr5A 508614964 508620378 5414 False 1230.666667 2660 83.378333 2628 8495 3 chr5A.!!$F6 5867
16 TraesCS6A01G119600 chr5A 508209866 508211298 1432 False 935.000000 935 79.065000 4171 5657 1 chr5A.!!$F2 1486
17 TraesCS6A01G119600 chr5A 508167480 508168624 1144 False 704.000000 704 78.296000 4167 5374 1 chr5A.!!$F1 1207
18 TraesCS6A01G119600 chr5A 508221386 508222299 913 False 675.000000 675 80.374000 4167 5117 1 chr5A.!!$F3 950
19 TraesCS6A01G119600 chr5A 510706729 510707429 700 True 444.000000 444 78.817000 7717 8419 1 chr5A.!!$R3 702
20 TraesCS6A01G119600 chr7D 101392292 101394219 1927 False 730.500000 1002 81.169000 6556 8442 2 chr7D.!!$F2 1886
21 TraesCS6A01G119600 chrUn 91483021 91484953 1932 True 670.000000 911 80.285500 6559 8454 2 chrUn.!!$R3 1895
22 TraesCS6A01G119600 chr7B 57913519 57914792 1273 False 902.000000 902 79.864000 7151 8448 1 chr7B.!!$F1 1297
23 TraesCS6A01G119600 chr7B 58243166 58245136 1970 False 383.000000 431 80.306000 6562 8457 2 chr7B.!!$F2 1895
24 TraesCS6A01G119600 chr7A 104800633 104801537 904 False 649.000000 649 80.106000 7438 8357 1 chr7A.!!$F2 919
25 TraesCS6A01G119600 chr7A 91018950 91020888 1938 False 629.500000 863 79.332000 6556 8457 2 chr7A.!!$F5 1901
26 TraesCS6A01G119600 chr7A 105929969 105930657 688 False 547.000000 547 81.356000 7151 7846 1 chr7A.!!$F3 695
27 TraesCS6A01G119600 chr7A 104499060 104499694 634 False 357.000000 357 78.000000 6525 7133 1 chr7A.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 229 0.037326 ACAATCACACGAGGCACGAT 60.037 50.000 12.15 0.00 45.77 3.73 F
239 241 0.233332 GGCACGATAGCGAGATTTGC 59.767 55.000 7.69 5.80 41.64 3.68 F
569 4175 0.306228 CGACGTGTCAAAACCATGCA 59.694 50.000 0.00 0.00 0.00 3.96 F
903 4795 0.606096 GAAAAACCCCAATCCACCCG 59.394 55.000 0.00 0.00 0.00 5.28 F
1330 5284 0.668535 GCTAATTTCCGGTGGATGCC 59.331 55.000 0.00 0.00 0.00 4.40 F
1752 5822 0.947180 CACGGGTCTACGTTTGGGTG 60.947 60.000 0.00 0.00 46.25 4.61 F
2613 6753 1.200519 TTTGGGACGGAGGGAGTATG 58.799 55.000 0.00 0.00 0.00 2.39 F
2618 6758 2.026542 GGGACGGAGGGAGTATGTTTTT 60.027 50.000 0.00 0.00 0.00 1.94 F
3126 7266 2.223665 GGAAATAGATGCAACAGCTGGC 60.224 50.000 19.93 13.39 30.76 4.85 F
3557 7704 2.837498 ACTGCCAATGAAGCCAAAAAC 58.163 42.857 0.00 0.00 0.00 2.43 F
4783 10817 3.005539 AGGGCCGATGTCTGTGCT 61.006 61.111 0.00 0.00 0.00 4.40 F
5844 12370 0.393132 TTCATTGCCGATTACGCCCA 60.393 50.000 0.00 0.00 38.29 5.36 F
5903 12429 0.320697 ACAACTTCTCCCTACACGCC 59.679 55.000 0.00 0.00 0.00 5.68 F
5904 12430 0.608640 CAACTTCTCCCTACACGCCT 59.391 55.000 0.00 0.00 0.00 5.52 F
6225 12753 1.003349 CCATGGCTGATGAGAGGGATC 59.997 57.143 0.00 0.00 33.31 3.36 F
7034 13613 1.133199 TGGGCATGTTTTTCTGGGAGT 60.133 47.619 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1432 5490 0.035915 GCCTTCTTCTTCCTTCGCCT 60.036 55.000 0.00 0.00 0.00 5.52 R
1567 5625 1.064060 GTCGATTCGGCCTCCAAAATG 59.936 52.381 6.18 0.00 0.00 2.32 R
1568 5626 1.379527 GTCGATTCGGCCTCCAAAAT 58.620 50.000 6.18 0.00 0.00 1.82 R
2595 6735 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12 R
2731 6871 0.447801 GCCGTGTGAATCTGCGAAAT 59.552 50.000 0.00 0.00 0.00 2.17 R
3434 7581 2.614259 AGTCACCTGATCCAAGTGAGT 58.386 47.619 9.17 9.62 40.98 3.41 R
3557 7704 3.182572 GCAAGTGTACGACTCAAACTCAG 59.817 47.826 0.00 0.00 31.73 3.35 R
4311 8506 3.306088 CGGACCAGTCATACTGTGAAAGT 60.306 47.826 6.33 0.00 44.50 2.66 R
4783 10817 0.041684 TCTCAGCATCTGGACCCTCA 59.958 55.000 0.00 0.00 31.51 3.86 R
5331 11794 4.640789 AATGCTCTAAGTCTCAGGTACG 57.359 45.455 0.00 0.00 0.00 3.67 R
5900 12426 0.175989 GAGGAAGGAAGGTGTAGGCG 59.824 60.000 0.00 0.00 0.00 5.52 R
7361 15638 1.135315 TTCTTGCCTCGCATGAATTGC 60.135 47.619 9.99 0.00 44.00 3.56 R
7885 16558 1.982226 ACAAGGGTGCACACATACCTA 59.018 47.619 23.57 0.00 35.63 3.08 R
7889 16562 2.039746 AGCTTACAAGGGTGCACACATA 59.960 45.455 23.57 7.79 0.00 2.29 R
7939 16612 6.595716 ACATCAGTTCTGGTTATTGCTAACTC 59.404 38.462 0.00 0.00 37.86 3.01 R
9003 18090 0.108472 GGGGACCGAGGAAAACTACG 60.108 60.000 0.00 0.00 40.86 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 2.151202 TGCTTCTTTTCCGATCGCTTT 58.849 42.857 10.32 0.00 0.00 3.51
49 51 2.159627 TGCTTCTTTTCCGATCGCTTTC 59.840 45.455 10.32 0.00 0.00 2.62
80 82 0.453282 CTGCCTTTGACGACATTGCG 60.453 55.000 0.00 0.00 37.29 4.85
94 96 1.402613 CATTGCGGCAGATCACAATCA 59.597 47.619 1.67 0.00 34.07 2.57
98 100 1.466360 GCGGCAGATCACAATCACAAC 60.466 52.381 0.00 0.00 34.07 3.32
100 102 1.466360 GGCAGATCACAATCACAACGC 60.466 52.381 0.00 0.00 34.07 4.84
104 106 1.463056 GATCACAATCACAACGCCGAA 59.537 47.619 0.00 0.00 31.76 4.30
157 159 5.907207 TCTGAACAACCTAGCTCATGATAC 58.093 41.667 0.00 0.00 0.00 2.24
217 219 4.984161 CACCCAAGAATCAAACAATCACAC 59.016 41.667 0.00 0.00 0.00 3.82
227 229 0.037326 ACAATCACACGAGGCACGAT 60.037 50.000 12.15 0.00 45.77 3.73
239 241 0.233332 GGCACGATAGCGAGATTTGC 59.767 55.000 7.69 5.80 41.64 3.68
247 249 2.941453 AGCGAGATTTGCTAACGAGA 57.059 45.000 0.00 0.00 41.87 4.04
255 257 5.724328 AGATTTGCTAACGAGATTCACTGA 58.276 37.500 0.00 0.00 0.00 3.41
264 266 3.386078 ACGAGATTCACTGACATGGCTAT 59.614 43.478 0.00 0.00 0.00 2.97
268 270 6.350027 CGAGATTCACTGACATGGCTATATCT 60.350 42.308 0.00 1.11 0.00 1.98
270 272 6.725369 AGATTCACTGACATGGCTATATCTCT 59.275 38.462 0.00 0.00 0.00 3.10
272 274 4.525874 TCACTGACATGGCTATATCTCTGG 59.474 45.833 0.00 0.00 0.00 3.86
273 275 3.837146 ACTGACATGGCTATATCTCTGGG 59.163 47.826 0.00 0.00 0.00 4.45
275 277 3.177228 GACATGGCTATATCTCTGGGGT 58.823 50.000 0.00 0.00 0.00 4.95
276 278 3.177228 ACATGGCTATATCTCTGGGGTC 58.823 50.000 0.00 0.00 0.00 4.46
283 285 4.703093 GCTATATCTCTGGGGTCTGACTAC 59.297 50.000 7.85 1.79 0.00 2.73
294 296 1.738908 GTCTGACTACGACCACTCCTC 59.261 57.143 0.00 0.00 0.00 3.71
300 302 0.928505 TACGACCACTCCTCCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
316 3901 6.323996 CCTCCCCATAATGCTCTATAATACGA 59.676 42.308 0.00 0.00 0.00 3.43
319 3904 6.980978 CCCCATAATGCTCTATAATACGACAG 59.019 42.308 0.00 0.00 0.00 3.51
345 3930 2.597217 CGCAAGCACAAAGGGGGA 60.597 61.111 0.00 0.00 0.00 4.81
348 3933 0.613012 GCAAGCACAAAGGGGGATCT 60.613 55.000 0.00 0.00 0.00 2.75
349 3934 1.180029 CAAGCACAAAGGGGGATCTG 58.820 55.000 0.00 0.00 0.00 2.90
350 3935 1.075601 AAGCACAAAGGGGGATCTGA 58.924 50.000 0.00 0.00 0.00 3.27
454 4060 3.741476 GCCGCACAAGCTCCAAGG 61.741 66.667 0.00 0.00 39.10 3.61
457 4063 2.684843 CGCACAAGCTCCAAGGCTC 61.685 63.158 0.00 0.00 42.24 4.70
472 4078 2.906458 CTCCCTCCTTCGCATGCT 59.094 61.111 17.13 0.00 0.00 3.79
473 4079 1.523258 CTCCCTCCTTCGCATGCTG 60.523 63.158 17.13 9.63 0.00 4.41
495 4101 4.456253 ACGCGCGTCCACTACTCG 62.456 66.667 32.73 0.00 39.31 4.18
506 4112 2.230508 TCCACTACTCGACGAAATGCTT 59.769 45.455 0.00 0.00 0.00 3.91
569 4175 0.306228 CGACGTGTCAAAACCATGCA 59.694 50.000 0.00 0.00 0.00 3.96
609 4216 9.218440 ACTGCTTTTGTTGAATTAATTAATGGG 57.782 29.630 11.42 0.00 0.00 4.00
612 4219 8.998377 GCTTTTGTTGAATTAATTAATGGGTGT 58.002 29.630 11.42 0.00 0.00 4.16
629 4236 8.943594 AATGGGTGTAACTTGTTAGGATTAAA 57.056 30.769 0.00 0.00 36.74 1.52
631 4238 7.747690 TGGGTGTAACTTGTTAGGATTAAAGA 58.252 34.615 0.00 0.00 36.74 2.52
632 4239 8.219178 TGGGTGTAACTTGTTAGGATTAAAGAA 58.781 33.333 0.00 0.00 36.74 2.52
633 4240 9.239551 GGGTGTAACTTGTTAGGATTAAAGAAT 57.760 33.333 0.00 0.00 36.74 2.40
667 4274 8.527810 ACATTTTGTCTGGTTTAAAAGTTGAGA 58.472 29.630 0.00 0.00 0.00 3.27
668 4275 9.364989 CATTTTGTCTGGTTTAAAAGTTGAGAA 57.635 29.630 0.00 0.00 0.00 2.87
669 4276 9.936759 ATTTTGTCTGGTTTAAAAGTTGAGAAA 57.063 25.926 0.00 0.00 0.00 2.52
712 4598 7.446106 TCTCTGTTAATTATAGGGAAGCCAA 57.554 36.000 0.00 0.00 0.00 4.52
713 4599 7.509546 TCTCTGTTAATTATAGGGAAGCCAAG 58.490 38.462 0.00 0.00 0.00 3.61
724 4610 0.723981 GAAGCCAAGACTCACGATGC 59.276 55.000 0.00 0.00 0.00 3.91
759 4647 2.498941 GGATGATCGACCTCGCCCA 61.499 63.158 0.00 0.00 39.60 5.36
771 4659 2.124901 CGCCCATCACGCCCTTAA 60.125 61.111 0.00 0.00 0.00 1.85
817 4709 2.102578 CCCTTTACATTTCCAGCCCTG 58.897 52.381 0.00 0.00 0.00 4.45
861 4753 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
862 4754 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
863 4755 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
864 4756 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
865 4757 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
866 4758 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
903 4795 0.606096 GAAAAACCCCAATCCACCCG 59.394 55.000 0.00 0.00 0.00 5.28
940 4836 1.795170 GCCGCAAAAGCCTCACTGAA 61.795 55.000 0.00 0.00 0.00 3.02
944 4840 1.888512 GCAAAAGCCTCACTGAATCCA 59.111 47.619 0.00 0.00 0.00 3.41
1026 4923 2.042843 GGCGGAAGAGGAGGAGGA 60.043 66.667 0.00 0.00 0.00 3.71
1027 4924 2.131067 GGCGGAAGAGGAGGAGGAG 61.131 68.421 0.00 0.00 0.00 3.69
1028 4925 2.131067 GCGGAAGAGGAGGAGGAGG 61.131 68.421 0.00 0.00 0.00 4.30
1034 4931 3.767044 GAGGAGGAGGAGGGGAGGC 62.767 73.684 0.00 0.00 0.00 4.70
1189 5086 4.748679 CGCAGCAGGCAAGCGTTC 62.749 66.667 18.59 0.00 45.82 3.95
1190 5087 4.748679 GCAGCAGGCAAGCGTTCG 62.749 66.667 0.00 0.00 43.97 3.95
1191 5088 4.748679 CAGCAGGCAAGCGTTCGC 62.749 66.667 9.24 9.24 40.15 4.70
1299 5253 2.516930 AGGGATGCGCGGAAATGG 60.517 61.111 3.18 0.00 0.00 3.16
1330 5284 0.668535 GCTAATTTCCGGTGGATGCC 59.331 55.000 0.00 0.00 0.00 4.40
1400 5458 2.182858 AACGGGGATGGGAGGAGTCT 62.183 60.000 0.00 0.00 0.00 3.24
1432 5490 1.006043 AGTCGAGAATGGGAGGAGTCA 59.994 52.381 0.00 0.00 0.00 3.41
1486 5544 8.682710 GGGCCTTAATTTTTCTTTTCTTTTTGT 58.317 29.630 0.84 0.00 0.00 2.83
1563 5621 3.575687 GGCGTAGGTAAAATAGGCCTAGA 59.424 47.826 19.33 0.00 46.06 2.43
1564 5622 4.321824 GGCGTAGGTAAAATAGGCCTAGAG 60.322 50.000 19.33 1.24 46.06 2.43
1566 5624 5.474876 GCGTAGGTAAAATAGGCCTAGAGTA 59.525 44.000 19.33 6.80 35.75 2.59
1567 5625 6.569418 GCGTAGGTAAAATAGGCCTAGAGTAC 60.569 46.154 19.33 17.34 35.75 2.73
1568 5626 6.488006 CGTAGGTAAAATAGGCCTAGAGTACA 59.512 42.308 19.33 0.00 35.75 2.90
1570 5628 7.932683 AGGTAAAATAGGCCTAGAGTACATT 57.067 36.000 19.33 3.57 0.00 2.71
1586 5644 1.339631 ACATTTTGGAGGCCGAATCGA 60.340 47.619 3.36 0.00 0.00 3.59
1751 5821 1.368579 CACGGGTCTACGTTTGGGT 59.631 57.895 0.00 0.00 46.25 4.51
1752 5822 0.947180 CACGGGTCTACGTTTGGGTG 60.947 60.000 0.00 0.00 46.25 4.61
1824 5894 4.023365 AGTTTCTGCATTTCTCTTGTCAGC 60.023 41.667 0.00 0.00 0.00 4.26
1884 5983 8.357796 TGCTCTTCTTCTATGAAAATGATACG 57.642 34.615 0.00 0.00 0.00 3.06
1904 6003 9.563898 TGATACGCCTTTCTATAATGTATTACG 57.436 33.333 0.00 0.00 0.00 3.18
1908 6007 7.927629 ACGCCTTTCTATAATGTATTACGGAAA 59.072 33.333 0.00 10.52 31.60 3.13
1928 6027 7.044798 CGGAAATGAAGAAGAAAGTAGGAGAT 58.955 38.462 0.00 0.00 0.00 2.75
1933 6032 4.479786 AGAAGAAAGTAGGAGATGCCAC 57.520 45.455 0.00 0.00 40.02 5.01
1984 6124 4.687483 CCAATTTGACCTTGCAATGTTCTC 59.313 41.667 8.84 0.00 0.00 2.87
2031 6171 5.278873 TGAATTGGATTGGGATTGGATTGA 58.721 37.500 0.00 0.00 0.00 2.57
2046 6186 8.861086 GGATTGGATTGAGTGAGATAGTAGTTA 58.139 37.037 0.00 0.00 0.00 2.24
2483 6623 3.492102 ATTCATGGTAATGTCCCTCGG 57.508 47.619 0.00 0.00 35.15 4.63
2485 6625 1.760613 TCATGGTAATGTCCCTCGGTC 59.239 52.381 0.00 0.00 35.15 4.79
2509 6649 4.508461 TCCATGAAATGCTTGTTCTGTG 57.492 40.909 0.00 0.00 44.97 3.66
2522 6662 2.276201 GTTCTGTGTGTGTGCACTGTA 58.724 47.619 19.41 0.98 45.44 2.74
2526 6666 4.055360 TCTGTGTGTGTGCACTGTAATAC 58.945 43.478 19.41 7.11 45.44 1.89
2527 6667 4.058124 CTGTGTGTGTGCACTGTAATACT 58.942 43.478 19.41 0.00 45.44 2.12
2529 6669 4.509970 TGTGTGTGTGCACTGTAATACTTC 59.490 41.667 19.41 5.24 45.44 3.01
2530 6670 4.062293 TGTGTGTGCACTGTAATACTTCC 58.938 43.478 19.41 0.42 45.44 3.46
2531 6671 4.202315 TGTGTGTGCACTGTAATACTTCCT 60.202 41.667 19.41 0.00 45.44 3.36
2532 6672 4.389077 GTGTGTGCACTGTAATACTTCCTC 59.611 45.833 19.41 0.00 42.13 3.71
2533 6673 3.933332 GTGTGCACTGTAATACTTCCTCC 59.067 47.826 19.41 0.00 0.00 4.30
2534 6674 3.187700 GTGCACTGTAATACTTCCTCCG 58.812 50.000 10.32 0.00 0.00 4.63
2535 6675 2.829720 TGCACTGTAATACTTCCTCCGT 59.170 45.455 0.00 0.00 0.00 4.69
2536 6676 3.119245 TGCACTGTAATACTTCCTCCGTC 60.119 47.826 0.00 0.00 0.00 4.79
2537 6677 3.737355 GCACTGTAATACTTCCTCCGTCC 60.737 52.174 0.00 0.00 0.00 4.79
2538 6678 3.029570 ACTGTAATACTTCCTCCGTCCC 58.970 50.000 0.00 0.00 0.00 4.46
2539 6679 3.028850 CTGTAATACTTCCTCCGTCCCA 58.971 50.000 0.00 0.00 0.00 4.37
2540 6680 3.443052 TGTAATACTTCCTCCGTCCCAA 58.557 45.455 0.00 0.00 0.00 4.12
2541 6681 3.839490 TGTAATACTTCCTCCGTCCCAAA 59.161 43.478 0.00 0.00 0.00 3.28
2542 6682 4.286549 TGTAATACTTCCTCCGTCCCAAAA 59.713 41.667 0.00 0.00 0.00 2.44
2543 6683 4.586306 AATACTTCCTCCGTCCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
2544 6684 5.703730 AATACTTCCTCCGTCCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
2545 6685 5.703730 ATACTTCCTCCGTCCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
2546 6686 3.951663 ACTTCCTCCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
2547 6687 3.329814 ACTTCCTCCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
2548 6688 3.343941 TCCTCCGTCCCAAAATAAGTG 57.656 47.619 0.00 0.00 0.00 3.16
2549 6689 2.907696 TCCTCCGTCCCAAAATAAGTGA 59.092 45.455 0.00 0.00 0.00 3.41
2550 6690 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2551 6691 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2552 6692 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2553 6693 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2554 6694 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2555 6695 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2556 6696 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2557 6697 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2558 6698 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2559 6699 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2560 6700 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2561 6701 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2562 6702 8.410141 CCCAAAATAAGTGACTCAACTTTGTAA 58.590 33.333 0.00 0.00 40.77 2.41
2563 6703 9.965824 CCAAAATAAGTGACTCAACTTTGTAAT 57.034 29.630 0.00 0.00 40.77 1.89
2600 6740 8.934023 ATAAAGTTGAGTCACTTATTTTGGGA 57.066 30.769 0.00 0.00 35.87 4.37
2601 6741 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2602 6742 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2603 6743 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2604 6744 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2605 6745 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2606 6746 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2607 6747 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2608 6748 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2609 6749 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2610 6750 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2611 6751 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2612 6752 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2613 6753 1.200519 TTTGGGACGGAGGGAGTATG 58.799 55.000 0.00 0.00 0.00 2.39
2618 6758 2.026542 GGGACGGAGGGAGTATGTTTTT 60.027 50.000 0.00 0.00 0.00 1.94
2814 6954 4.233408 GCTTTTGCAGACGCCAAG 57.767 55.556 0.00 0.00 46.58 3.61
3126 7266 2.223665 GGAAATAGATGCAACAGCTGGC 60.224 50.000 19.93 13.39 30.76 4.85
3263 7403 9.530633 ACGTAGAACAGGTCAGATTTTATAATC 57.469 33.333 0.00 0.00 40.42 1.75
3340 7487 3.263170 TGCCAAGGTGTTGCTTCTATCTA 59.737 43.478 0.00 0.00 31.64 1.98
3483 7630 8.234136 AGTATTACGGAATGTTGATCAGAGTA 57.766 34.615 2.16 0.00 0.00 2.59
3557 7704 2.837498 ACTGCCAATGAAGCCAAAAAC 58.163 42.857 0.00 0.00 0.00 2.43
3672 7840 7.662604 AACTAGTGTAAAACCAGGATAAACG 57.337 36.000 0.00 0.00 0.00 3.60
3673 7841 6.762333 ACTAGTGTAAAACCAGGATAAACGT 58.238 36.000 0.00 0.00 0.00 3.99
3718 7894 7.759489 AGTCAAATTCTTTGCCACTACATTA 57.241 32.000 0.00 0.00 40.43 1.90
3834 8019 8.502738 ACACTATAATGGTTGATTCCCTTGTAT 58.497 33.333 0.00 0.00 0.00 2.29
4783 10817 3.005539 AGGGCCGATGTCTGTGCT 61.006 61.111 0.00 0.00 0.00 4.40
4984 11411 5.007234 CGTCACATTGTTCCTTCTTTGTGTA 59.993 40.000 0.00 0.00 36.66 2.90
5112 11540 9.474920 CCAAATTACAGCTTGAAAGTATTGAAA 57.525 29.630 0.00 0.00 0.00 2.69
5119 11547 9.435688 ACAGCTTGAAAGTATTGAAAAACTTTT 57.564 25.926 9.46 0.00 43.97 2.27
5122 11550 9.408731 GCTTGAAAGTATTGAAAAACTTTTTCG 57.591 29.630 18.03 4.85 43.97 3.46
5123 11551 9.900264 CTTGAAAGTATTGAAAAACTTTTTCGG 57.100 29.630 18.03 0.93 43.97 4.30
5124 11552 8.989653 TGAAAGTATTGAAAAACTTTTTCGGT 57.010 26.923 18.03 12.87 43.97 4.69
5125 11553 9.425577 TGAAAGTATTGAAAAACTTTTTCGGTT 57.574 25.926 18.03 10.23 43.97 4.44
5172 11624 3.457234 GATACATCAGGATCACACGCAA 58.543 45.455 0.00 0.00 0.00 4.85
5319 11782 3.119602 TGTGTTCTCATACGCACTCTACC 60.120 47.826 0.00 0.00 33.87 3.18
5331 11794 4.575645 ACGCACTCTACCATAAGTCTCTAC 59.424 45.833 0.00 0.00 0.00 2.59
5623 12138 8.698973 TGGTCAATCAACCAAAAGAAGTATTA 57.301 30.769 0.00 0.00 46.26 0.98
5647 12162 4.739793 TCCTTTTCATGGGTCAGTTTCAT 58.260 39.130 0.00 0.00 0.00 2.57
5661 12187 4.469586 TCAGTTTCATATGAGTAGGCCACA 59.530 41.667 5.01 0.00 0.00 4.17
5685 12211 5.452078 TTTTTGTGTGATTCATCCACTCC 57.548 39.130 8.38 0.00 35.66 3.85
5731 12257 3.686726 GGTCTCTGTTCGCTGATTTCATT 59.313 43.478 0.00 0.00 0.00 2.57
5816 12342 5.452776 GGATCAGTTACCACACAATCGGATA 60.453 44.000 0.00 0.00 0.00 2.59
5841 12367 1.333619 ACCATTCATTGCCGATTACGC 59.666 47.619 0.00 0.00 38.29 4.42
5844 12370 0.393132 TTCATTGCCGATTACGCCCA 60.393 50.000 0.00 0.00 38.29 5.36
5853 12379 2.546789 CCGATTACGCCCAAAATCTACC 59.453 50.000 0.00 0.00 38.29 3.18
5871 12397 5.401550 TCTACCGTAACAAAACTGATACCG 58.598 41.667 0.00 0.00 0.00 4.02
5887 12413 3.636231 CGGAGGGGTCCTGCACAA 61.636 66.667 6.30 0.00 42.30 3.33
5897 12423 1.623811 GTCCTGCACAACTTCTCCCTA 59.376 52.381 0.00 0.00 0.00 3.53
5898 12424 1.623811 TCCTGCACAACTTCTCCCTAC 59.376 52.381 0.00 0.00 0.00 3.18
5899 12425 1.347707 CCTGCACAACTTCTCCCTACA 59.652 52.381 0.00 0.00 0.00 2.74
5900 12426 2.417719 CTGCACAACTTCTCCCTACAC 58.582 52.381 0.00 0.00 0.00 2.90
5901 12427 1.270094 TGCACAACTTCTCCCTACACG 60.270 52.381 0.00 0.00 0.00 4.49
5902 12428 1.429463 CACAACTTCTCCCTACACGC 58.571 55.000 0.00 0.00 0.00 5.34
5903 12429 0.320697 ACAACTTCTCCCTACACGCC 59.679 55.000 0.00 0.00 0.00 5.68
5904 12430 0.608640 CAACTTCTCCCTACACGCCT 59.391 55.000 0.00 0.00 0.00 5.52
6106 12633 5.178623 CACTAAGTAAACGACAAATCCTGCA 59.821 40.000 0.00 0.00 0.00 4.41
6225 12753 1.003349 CCATGGCTGATGAGAGGGATC 59.997 57.143 0.00 0.00 33.31 3.36
6238 12770 7.511714 TGATGAGAGGGATCAGATCTGAATTAA 59.488 37.037 28.40 6.51 43.58 1.40
6239 12771 7.868792 TGAGAGGGATCAGATCTGAATTAAT 57.131 36.000 28.40 12.43 43.58 1.40
6240 12772 7.677892 TGAGAGGGATCAGATCTGAATTAATG 58.322 38.462 28.40 0.00 43.58 1.90
6241 12773 7.511714 TGAGAGGGATCAGATCTGAATTAATGA 59.488 37.037 28.40 4.46 43.58 2.57
6348 12880 8.950210 TGATTGTCTTCACCTGATCTTTATTTC 58.050 33.333 0.00 0.00 0.00 2.17
6511 13043 5.348997 CCGTTTTTGTTACCTTTTTGCTCAA 59.651 36.000 0.00 0.00 0.00 3.02
6992 13570 6.495706 TCTATAATCACGCTGTAGAACTGTG 58.504 40.000 0.00 0.00 34.36 3.66
7034 13613 1.133199 TGGGCATGTTTTTCTGGGAGT 60.133 47.619 0.00 0.00 0.00 3.85
7098 13677 5.711506 TGGTGTATCATTCTTTTCACTGCAT 59.288 36.000 0.00 0.00 0.00 3.96
7149 13730 1.338107 TCGTCCATCAGAAGTGTGGT 58.662 50.000 0.00 0.00 34.61 4.16
7298 15575 4.724074 TGGATGTTGCCAATTCATCTTC 57.276 40.909 7.66 0.00 38.28 2.87
7302 15579 3.091545 TGTTGCCAATTCATCTTCCTCC 58.908 45.455 0.00 0.00 0.00 4.30
7403 15686 4.773323 ACCTCAAAAGCTGAACTAATGC 57.227 40.909 0.00 0.00 32.17 3.56
7596 15964 1.745653 GACAAGCATTAGGTCCTTGGC 59.254 52.381 0.00 0.00 40.08 4.52
7696 16185 7.640597 TCAATCTCTATAGTTCTTGGTTCGA 57.359 36.000 0.00 0.00 0.00 3.71
7885 16558 2.009774 CGGTCGATCAATGCTTTCCTT 58.990 47.619 0.00 0.00 0.00 3.36
7888 16561 3.561725 GGTCGATCAATGCTTTCCTTAGG 59.438 47.826 0.00 0.00 0.00 2.69
7889 16562 4.192317 GTCGATCAATGCTTTCCTTAGGT 58.808 43.478 0.00 0.00 0.00 3.08
7907 16580 2.373836 AGGTATGTGTGCACCCTTGTAA 59.626 45.455 15.69 0.00 35.25 2.41
7939 16612 3.226777 AGATCAGACTGATTAGGTCCCG 58.773 50.000 18.89 0.00 37.20 5.14
8386 17155 5.220970 CGGTATTATGGCTGTTTGTTAAGGG 60.221 44.000 0.00 0.00 0.00 3.95
8469 17239 6.371809 TTCTGTTATGGAAGTGAACACAAC 57.628 37.500 7.68 2.91 0.00 3.32
8497 17267 7.815068 TGTCTAGCTATTTCTTGAGTTCTTGTC 59.185 37.037 0.00 0.00 0.00 3.18
8498 17268 7.815068 GTCTAGCTATTTCTTGAGTTCTTGTCA 59.185 37.037 0.00 0.00 0.00 3.58
8500 17270 7.375106 AGCTATTTCTTGAGTTCTTGTCATG 57.625 36.000 0.00 0.00 0.00 3.07
8516 17289 8.138365 TCTTGTCATGTAATTATTTAGCCGAC 57.862 34.615 0.00 0.00 0.00 4.79
8517 17290 7.766738 TCTTGTCATGTAATTATTTAGCCGACA 59.233 33.333 0.00 0.00 0.00 4.35
8544 17317 5.062528 CCAAGTGCATAACAAAATTGGGTT 58.937 37.500 0.00 1.27 36.04 4.11
8636 17639 9.696917 AACATTTAAATTGTAGGCTTCAAGAAG 57.303 29.630 12.17 5.46 41.24 2.85
8708 17711 6.588719 ATTGTTAGCCTGCAAATTGTCTAA 57.411 33.333 0.00 0.00 0.00 2.10
8727 17730 7.390823 TGTCTAACTAATTTATGTGTGCCTCA 58.609 34.615 0.00 0.00 0.00 3.86
8741 17744 0.178301 GCCTCAGGTACCTTGCCTAC 59.822 60.000 13.15 0.00 34.45 3.18
8749 17752 5.252164 TCAGGTACCTTGCCTACCTATTTTT 59.748 40.000 13.15 0.00 41.88 1.94
8753 17756 4.856509 ACCTTGCCTACCTATTTTTCCTC 58.143 43.478 0.00 0.00 0.00 3.71
8939 17943 6.087159 CGGCATATTCATGTGAATTTTGATCG 59.913 38.462 12.95 13.08 41.64 3.69
8985 18048 0.179062 GTGAGCCTATGTGGAGCTGG 60.179 60.000 0.00 0.00 36.87 4.85
9003 18090 0.796927 GGTCTGCGTTCTTTAGCCAC 59.203 55.000 0.00 0.00 0.00 5.01
9061 18148 3.424433 CGTTTTAGCTCATCCACGTTTCC 60.424 47.826 0.00 0.00 0.00 3.13
9069 18156 4.675029 CCACGTTTCCGCGGAGGT 62.675 66.667 29.20 23.31 38.58 3.85
9098 18185 3.088194 TGAACCACTACGTTCACTCAC 57.912 47.619 0.00 0.00 45.49 3.51
9099 18186 2.691526 TGAACCACTACGTTCACTCACT 59.308 45.455 0.00 0.00 45.49 3.41
9100 18187 3.884693 TGAACCACTACGTTCACTCACTA 59.115 43.478 0.00 0.00 45.49 2.74
9101 18188 3.911661 ACCACTACGTTCACTCACTAC 57.088 47.619 0.00 0.00 0.00 2.73
9102 18189 2.225019 ACCACTACGTTCACTCACTACG 59.775 50.000 0.00 0.00 40.85 3.51
9126 18213 1.640428 TGCTCTTCGCGGAACATTAG 58.360 50.000 6.13 0.00 43.27 1.73
9144 18231 4.425180 TTAGTGCAGTACAAGGGTTTCA 57.575 40.909 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.363744 CGATCGGAAAAGAAGCAGCT 58.636 50.000 7.38 0.00 0.00 4.24
80 82 1.466360 GCGTTGTGATTGTGATCTGCC 60.466 52.381 0.00 0.00 33.28 4.85
84 86 1.075542 TCGGCGTTGTGATTGTGATC 58.924 50.000 6.85 0.00 0.00 2.92
94 96 2.767505 AGAGAGAAATTTCGGCGTTGT 58.232 42.857 12.42 0.00 0.00 3.32
98 100 7.644986 ATTAATCTAGAGAGAAATTTCGGCG 57.355 36.000 12.42 0.00 34.61 6.46
127 129 5.000012 AGCTAGGTTGTTCAGAGATTACG 58.000 43.478 0.00 0.00 0.00 3.18
129 131 6.381133 TCATGAGCTAGGTTGTTCAGAGATTA 59.619 38.462 0.00 0.00 31.14 1.75
135 137 5.053145 GGTATCATGAGCTAGGTTGTTCAG 58.947 45.833 0.09 0.00 31.14 3.02
174 176 5.193679 GGTGACCAACTATGCTCCTTAATT 58.806 41.667 0.00 0.00 0.00 1.40
175 177 4.781934 GGTGACCAACTATGCTCCTTAAT 58.218 43.478 0.00 0.00 0.00 1.40
176 178 4.216411 GGTGACCAACTATGCTCCTTAA 57.784 45.455 0.00 0.00 0.00 1.85
177 179 3.906720 GGTGACCAACTATGCTCCTTA 57.093 47.619 0.00 0.00 0.00 2.69
178 180 2.789409 GGTGACCAACTATGCTCCTT 57.211 50.000 0.00 0.00 0.00 3.36
196 198 4.023279 TCGTGTGATTGTTTGATTCTTGGG 60.023 41.667 0.00 0.00 0.00 4.12
197 199 5.107109 TCGTGTGATTGTTTGATTCTTGG 57.893 39.130 0.00 0.00 0.00 3.61
204 206 1.601903 GTGCCTCGTGTGATTGTTTGA 59.398 47.619 0.00 0.00 0.00 2.69
217 219 0.039978 AATCTCGCTATCGTGCCTCG 60.040 55.000 0.00 0.00 41.41 4.63
227 229 4.569761 ATCTCGTTAGCAAATCTCGCTA 57.430 40.909 0.00 0.00 40.96 4.26
239 241 3.553511 GCCATGTCAGTGAATCTCGTTAG 59.446 47.826 0.00 0.00 0.00 2.34
243 245 2.306341 AGCCATGTCAGTGAATCTCG 57.694 50.000 0.00 0.00 0.00 4.04
247 249 6.295745 CCAGAGATATAGCCATGTCAGTGAAT 60.296 42.308 0.00 0.00 0.00 2.57
255 257 3.177228 GACCCCAGAGATATAGCCATGT 58.823 50.000 0.00 0.00 0.00 3.21
264 266 2.775960 TCGTAGTCAGACCCCAGAGATA 59.224 50.000 0.00 0.00 0.00 1.98
268 270 3.261250 GTCGTAGTCAGACCCCAGA 57.739 57.895 0.00 0.00 32.78 3.86
275 277 1.339824 GGAGGAGTGGTCGTAGTCAGA 60.340 57.143 0.00 0.00 0.00 3.27
276 278 1.096416 GGAGGAGTGGTCGTAGTCAG 58.904 60.000 0.00 0.00 0.00 3.51
283 285 1.070758 CATTATGGGGAGGAGTGGTCG 59.929 57.143 0.00 0.00 0.00 4.79
288 290 2.503869 AGAGCATTATGGGGAGGAGT 57.496 50.000 0.00 0.00 0.00 3.85
294 296 6.873997 TGTCGTATTATAGAGCATTATGGGG 58.126 40.000 0.00 0.00 0.00 4.96
316 3901 1.331756 GTGCTTGCGCTATTATGCTGT 59.668 47.619 9.73 0.00 36.97 4.40
319 3904 2.473530 TTGTGCTTGCGCTATTATGC 57.526 45.000 9.73 2.36 36.97 3.14
342 3927 2.182842 GCACACGCCATCAGATCCC 61.183 63.158 0.00 0.00 0.00 3.85
366 3951 4.704833 CCTCACTGGCCACACGGG 62.705 72.222 0.00 0.00 40.85 5.28
378 3963 0.755686 CTACATCTCTGGGGCCTCAC 59.244 60.000 0.00 0.00 0.00 3.51
380 3965 1.751563 GCTACATCTCTGGGGCCTC 59.248 63.158 0.84 0.00 0.00 4.70
388 3973 4.868268 TGTACAAGGTAGGCTACATCTCT 58.132 43.478 24.96 10.74 0.00 3.10
390 3975 6.561519 ATTTGTACAAGGTAGGCTACATCT 57.438 37.500 24.96 11.79 0.00 2.90
454 4060 2.899339 GCATGCGAAGGAGGGAGC 60.899 66.667 0.00 0.00 0.00 4.70
485 4091 1.816835 AGCATTTCGTCGAGTAGTGGA 59.183 47.619 0.00 0.00 0.00 4.02
495 4101 3.831715 AACTTAGCCAAGCATTTCGTC 57.168 42.857 0.00 0.00 34.94 4.20
506 4112 7.458397 TCTTCCTTCTCATTTTAACTTAGCCA 58.542 34.615 0.00 0.00 0.00 4.75
638 4245 9.581099 CAACTTTTAAACCAGACAAAATGTACT 57.419 29.630 0.00 0.00 0.00 2.73
639 4246 9.575783 TCAACTTTTAAACCAGACAAAATGTAC 57.424 29.630 0.00 0.00 0.00 2.90
683 4290 9.343539 GCTTCCCTATAATTAACAGAGAAATGT 57.656 33.333 0.00 0.00 33.96 2.71
686 4293 7.867921 TGGCTTCCCTATAATTAACAGAGAAA 58.132 34.615 0.00 0.00 0.00 2.52
687 4294 7.446106 TGGCTTCCCTATAATTAACAGAGAA 57.554 36.000 0.00 0.00 0.00 2.87
688 4295 7.347222 TCTTGGCTTCCCTATAATTAACAGAGA 59.653 37.037 0.00 0.00 0.00 3.10
689 4296 7.442666 GTCTTGGCTTCCCTATAATTAACAGAG 59.557 40.741 0.00 0.00 0.00 3.35
690 4297 7.127339 AGTCTTGGCTTCCCTATAATTAACAGA 59.873 37.037 0.00 0.00 0.00 3.41
691 4298 7.283329 AGTCTTGGCTTCCCTATAATTAACAG 58.717 38.462 0.00 0.00 0.00 3.16
692 4299 7.092623 TGAGTCTTGGCTTCCCTATAATTAACA 60.093 37.037 0.00 0.00 0.00 2.41
693 4300 7.226918 GTGAGTCTTGGCTTCCCTATAATTAAC 59.773 40.741 0.00 0.00 0.00 2.01
694 4301 7.280356 GTGAGTCTTGGCTTCCCTATAATTAA 58.720 38.462 0.00 0.00 0.00 1.40
695 4302 6.462487 CGTGAGTCTTGGCTTCCCTATAATTA 60.462 42.308 0.00 0.00 0.00 1.40
697 4304 4.202264 CGTGAGTCTTGGCTTCCCTATAAT 60.202 45.833 0.00 0.00 0.00 1.28
698 4305 3.132289 CGTGAGTCTTGGCTTCCCTATAA 59.868 47.826 0.00 0.00 0.00 0.98
699 4306 2.693591 CGTGAGTCTTGGCTTCCCTATA 59.306 50.000 0.00 0.00 0.00 1.31
700 4307 1.482593 CGTGAGTCTTGGCTTCCCTAT 59.517 52.381 0.00 0.00 0.00 2.57
702 4309 0.832135 TCGTGAGTCTTGGCTTCCCT 60.832 55.000 0.00 0.00 0.00 4.20
703 4310 0.250513 ATCGTGAGTCTTGGCTTCCC 59.749 55.000 0.00 0.00 0.00 3.97
704 4311 1.363744 CATCGTGAGTCTTGGCTTCC 58.636 55.000 0.00 0.00 0.00 3.46
705 4312 0.723981 GCATCGTGAGTCTTGGCTTC 59.276 55.000 0.00 0.00 0.00 3.86
712 4598 4.813161 CCATTTTATCAGCATCGTGAGTCT 59.187 41.667 0.00 0.00 0.00 3.24
713 4599 4.811024 TCCATTTTATCAGCATCGTGAGTC 59.189 41.667 0.00 0.00 0.00 3.36
724 4610 4.450976 TCATCCACGGTCCATTTTATCAG 58.549 43.478 0.00 0.00 0.00 2.90
759 4647 1.270947 TGGAAACGTTAAGGGCGTGAT 60.271 47.619 0.00 0.00 42.10 3.06
771 4659 0.531311 GGGTGTCGAAGTGGAAACGT 60.531 55.000 0.00 0.00 0.00 3.99
827 4719 4.320456 AGAGCAGTGCGGGTGGTG 62.320 66.667 10.00 0.00 0.00 4.17
828 4720 4.008933 GAGAGCAGTGCGGGTGGT 62.009 66.667 10.00 0.00 0.00 4.16
861 4753 0.659427 CGAGCAGAGCAGAGAGAGAG 59.341 60.000 0.00 0.00 0.00 3.20
862 4754 0.035534 ACGAGCAGAGCAGAGAGAGA 60.036 55.000 0.00 0.00 0.00 3.10
863 4755 1.330521 GTACGAGCAGAGCAGAGAGAG 59.669 57.143 0.00 0.00 0.00 3.20
864 4756 1.374560 GTACGAGCAGAGCAGAGAGA 58.625 55.000 0.00 0.00 0.00 3.10
865 4757 0.027455 CGTACGAGCAGAGCAGAGAG 59.973 60.000 10.44 0.00 0.00 3.20
866 4758 0.391263 TCGTACGAGCAGAGCAGAGA 60.391 55.000 15.28 0.00 0.00 3.10
933 4829 0.776810 TTGGGGCTTGGATTCAGTGA 59.223 50.000 0.00 0.00 0.00 3.41
940 4836 1.079073 CAGGGTTTGGGGCTTGGAT 59.921 57.895 0.00 0.00 0.00 3.41
1034 4931 2.959484 ATGTGCACCACCTCCTCCG 61.959 63.158 15.69 0.00 32.73 4.63
1182 5079 1.154188 GAGAGAGACGCGAACGCTT 60.154 57.895 15.93 7.78 45.53 4.68
1186 5083 1.062002 CAGAGAGAGAGAGACGCGAAC 59.938 57.143 15.93 6.52 0.00 3.95
1187 5084 1.364721 CAGAGAGAGAGAGACGCGAA 58.635 55.000 15.93 0.00 0.00 4.70
1189 5086 0.742990 ACCAGAGAGAGAGAGACGCG 60.743 60.000 3.53 3.53 0.00 6.01
1190 5087 1.014352 GACCAGAGAGAGAGAGACGC 58.986 60.000 0.00 0.00 0.00 5.19
1191 5088 1.286501 CGACCAGAGAGAGAGAGACG 58.713 60.000 0.00 0.00 0.00 4.18
1192 5089 2.396590 ACGACCAGAGAGAGAGAGAC 57.603 55.000 0.00 0.00 0.00 3.36
1314 5268 0.039618 ACAGGCATCCACCGGAAATT 59.960 50.000 9.46 0.00 34.34 1.82
1409 5467 0.255033 TCCTCCCATTCTCGACTCGA 59.745 55.000 0.29 0.29 0.00 4.04
1410 5468 0.665835 CTCCTCCCATTCTCGACTCG 59.334 60.000 0.00 0.00 0.00 4.18
1432 5490 0.035915 GCCTTCTTCTTCCTTCGCCT 60.036 55.000 0.00 0.00 0.00 5.52
1486 5544 4.303794 ACAAGGCCCTATATGGTACTCAA 58.696 43.478 0.00 0.00 0.00 3.02
1488 5546 4.102681 ACAACAAGGCCCTATATGGTACTC 59.897 45.833 0.00 0.00 0.00 2.59
1491 5549 3.434453 GCACAACAAGGCCCTATATGGTA 60.434 47.826 0.00 0.00 0.00 3.25
1563 5621 2.871096 TTCGGCCTCCAAAATGTACT 57.129 45.000 0.00 0.00 0.00 2.73
1564 5622 2.031683 CGATTCGGCCTCCAAAATGTAC 59.968 50.000 0.00 0.00 0.00 2.90
1566 5624 1.094785 CGATTCGGCCTCCAAAATGT 58.905 50.000 0.00 0.00 0.00 2.71
1567 5625 1.064060 GTCGATTCGGCCTCCAAAATG 59.936 52.381 6.18 0.00 0.00 2.32
1568 5626 1.379527 GTCGATTCGGCCTCCAAAAT 58.620 50.000 6.18 0.00 0.00 1.82
1570 5628 1.447140 CGTCGATTCGGCCTCCAAA 60.447 57.895 4.89 0.00 0.00 3.28
1795 5865 3.126000 AGAGAAATGCAGAAACTAAGCGC 59.874 43.478 0.00 0.00 0.00 5.92
1824 5894 1.688735 TCTCTGTTCACAGGGTGACAG 59.311 52.381 6.72 16.10 44.67 3.51
1902 6001 6.014499 TCTCCTACTTTCTTCTTCATTTCCGT 60.014 38.462 0.00 0.00 0.00 4.69
1904 6003 7.201688 GCATCTCCTACTTTCTTCTTCATTTCC 60.202 40.741 0.00 0.00 0.00 3.13
1908 6007 5.190528 TGGCATCTCCTACTTTCTTCTTCAT 59.809 40.000 0.00 0.00 35.26 2.57
1928 6027 5.774690 AGAAAATAATTTGACAGAGGTGGCA 59.225 36.000 0.00 0.00 41.34 4.92
1958 6057 5.999205 ACATTGCAAGGTCAAATTGGATA 57.001 34.783 11.64 0.00 0.00 2.59
2008 6148 5.278873 TCAATCCAATCCCAATCCAATTCA 58.721 37.500 0.00 0.00 0.00 2.57
2010 6150 5.129815 CACTCAATCCAATCCCAATCCAATT 59.870 40.000 0.00 0.00 0.00 2.32
2017 6157 4.868172 ATCTCACTCAATCCAATCCCAA 57.132 40.909 0.00 0.00 0.00 4.12
2019 6159 5.559148 ACTATCTCACTCAATCCAATCCC 57.441 43.478 0.00 0.00 0.00 3.85
2046 6186 6.097554 TGTGTAGACAAACCAAACATCCATTT 59.902 34.615 0.00 0.00 0.00 2.32
2483 6623 6.094603 ACAGAACAAGCATTTCATGGATAGAC 59.905 38.462 0.00 0.00 0.00 2.59
2485 6625 6.127814 ACACAGAACAAGCATTTCATGGATAG 60.128 38.462 0.00 0.00 0.00 2.08
2522 6662 4.586306 ATTTTGGGACGGAGGAAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
2526 6666 3.689649 CACTTATTTTGGGACGGAGGAAG 59.310 47.826 0.00 0.00 0.00 3.46
2527 6667 3.328343 TCACTTATTTTGGGACGGAGGAA 59.672 43.478 0.00 0.00 0.00 3.36
2529 6669 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2530 6670 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2531 6671 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2532 6672 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2533 6673 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2534 6674 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2535 6675 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2536 6676 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2537 6677 9.965824 ATTACAAAGTTGAGTCACTTATTTTGG 57.034 29.630 12.94 0.78 35.87 3.28
2575 6715 8.793592 GTCCCAAAATAAGTGACTCAACTTTAT 58.206 33.333 0.00 0.00 40.77 1.40
2576 6716 7.041644 CGTCCCAAAATAAGTGACTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
2577 6717 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2578 6718 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2579 6719 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2580 6720 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2581 6721 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2582 6722 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2583 6723 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2584 6724 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2585 6725 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2586 6726 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2587 6727 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2588 6728 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2589 6729 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2590 6730 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2591 6731 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2592 6732 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2593 6733 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
2594 6734 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
2595 6735 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2596 6736 0.042131 AACATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2597 6737 1.201424 AAACATACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
2598 6738 3.345508 AAAAACATACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
2618 6758 3.401033 TCCGAGCAGAAACTGAATCAA 57.599 42.857 2.81 0.00 32.44 2.57
2693 6833 3.688185 GGGGTTAGCAGCTAAACAACTAC 59.312 47.826 27.84 12.52 35.54 2.73
2697 6837 2.373836 TGAGGGGTTAGCAGCTAAACAA 59.626 45.455 27.84 10.47 35.54 2.83
2731 6871 0.447801 GCCGTGTGAATCTGCGAAAT 59.552 50.000 0.00 0.00 0.00 2.17
2999 7139 2.923020 GCAACTTTTGATATTGGCCACG 59.077 45.455 3.88 0.00 0.00 4.94
3126 7266 3.304659 GCTGGTTGGTACTGTGTGAATTG 60.305 47.826 0.00 0.00 0.00 2.32
3263 7403 5.113383 TGATACATAAAACTACGGGCTGTG 58.887 41.667 9.79 1.69 0.00 3.66
3434 7581 2.614259 AGTCACCTGATCCAAGTGAGT 58.386 47.619 9.17 9.62 40.98 3.41
3557 7704 3.182572 GCAAGTGTACGACTCAAACTCAG 59.817 47.826 0.00 0.00 31.73 3.35
3718 7894 6.878389 ACACAACCAAAACAAATGAGACAAAT 59.122 30.769 0.00 0.00 0.00 2.32
3834 8019 3.769739 ATTTGCGGCTATCAGGTCATA 57.230 42.857 0.00 0.00 0.00 2.15
4311 8506 3.306088 CGGACCAGTCATACTGTGAAAGT 60.306 47.826 6.33 0.00 44.50 2.66
4783 10817 0.041684 TCTCAGCATCTGGACCCTCA 59.958 55.000 0.00 0.00 31.51 3.86
5243 11697 9.104965 TCACGATAACATTTTTATAGACAAGGG 57.895 33.333 0.00 0.00 0.00 3.95
5331 11794 4.640789 AATGCTCTAAGTCTCAGGTACG 57.359 45.455 0.00 0.00 0.00 3.67
5528 12043 8.763601 GGTGTGGCTCCTAATAATAAGATCTAT 58.236 37.037 0.00 0.00 0.00 1.98
5623 12138 5.147032 TGAAACTGACCCATGAAAAGGATT 58.853 37.500 0.00 0.00 0.00 3.01
5685 12211 5.907197 TCTTAGTTCTTCAAGTCAAAGCG 57.093 39.130 0.00 0.00 0.00 4.68
5731 12257 5.497635 TCGTGGTGTATGCTAATTACGTA 57.502 39.130 0.00 0.00 0.00 3.57
5816 12342 0.321210 TCGGCAATGAATGGTGTCGT 60.321 50.000 0.00 0.00 43.18 4.34
5841 12367 6.016943 TCAGTTTTGTTACGGTAGATTTTGGG 60.017 38.462 0.00 0.00 0.00 4.12
5844 12370 8.724229 GGTATCAGTTTTGTTACGGTAGATTTT 58.276 33.333 0.00 0.00 32.60 1.82
5853 12379 3.615496 CCTCCGGTATCAGTTTTGTTACG 59.385 47.826 0.00 0.00 32.60 3.18
5871 12397 2.034221 GTTGTGCAGGACCCCTCC 59.966 66.667 0.00 0.00 36.71 4.30
5887 12413 1.272313 TGTAGGCGTGTAGGGAGAAGT 60.272 52.381 0.00 0.00 0.00 3.01
5897 12423 0.320697 GAAGGAAGGTGTAGGCGTGT 59.679 55.000 0.00 0.00 0.00 4.49
5898 12424 0.391263 GGAAGGAAGGTGTAGGCGTG 60.391 60.000 0.00 0.00 0.00 5.34
5899 12425 0.544595 AGGAAGGAAGGTGTAGGCGT 60.545 55.000 0.00 0.00 0.00 5.68
5900 12426 0.175989 GAGGAAGGAAGGTGTAGGCG 59.824 60.000 0.00 0.00 0.00 5.52
5901 12427 0.542333 GGAGGAAGGAAGGTGTAGGC 59.458 60.000 0.00 0.00 0.00 3.93
5902 12428 1.834263 CAGGAGGAAGGAAGGTGTAGG 59.166 57.143 0.00 0.00 0.00 3.18
5903 12429 1.834263 CCAGGAGGAAGGAAGGTGTAG 59.166 57.143 0.00 0.00 36.89 2.74
5904 12430 1.952621 CCAGGAGGAAGGAAGGTGTA 58.047 55.000 0.00 0.00 36.89 2.90
6106 12633 2.028294 CAGAGCAGTCACATCCTCAACT 60.028 50.000 0.00 0.00 0.00 3.16
6238 12770 6.155049 CCATATTTGGGGAAGAAAACACTCAT 59.845 38.462 0.00 0.00 39.56 2.90
6239 12771 5.480073 CCATATTTGGGGAAGAAAACACTCA 59.520 40.000 0.00 0.00 39.56 3.41
6240 12772 5.965922 CCATATTTGGGGAAGAAAACACTC 58.034 41.667 0.00 0.00 39.56 3.51
6348 12880 6.449698 ACCAAGCACAAGAATTACAATTCAG 58.550 36.000 15.20 10.22 45.59 3.02
6511 13043 7.942341 TGATAGAACAATTAAGAGGTGTTTGGT 59.058 33.333 0.00 0.00 35.67 3.67
6643 13179 5.428457 TGGAGGAGCAAGAACCAATAATAGA 59.572 40.000 0.00 0.00 0.00 1.98
6660 13199 7.560368 ACACATAGATTAAGAACTTGGAGGAG 58.440 38.462 0.00 0.00 0.00 3.69
6969 13545 6.415280 GTCACAGTTCTACAGCGTGATTATAG 59.585 42.308 0.00 0.00 38.72 1.31
6992 13570 2.865551 CAATGTTGGCCACAAAAGTGTC 59.134 45.455 3.88 0.00 39.50 3.67
7034 13613 7.731882 TCACATAACTTTTGGAAACGTATCA 57.268 32.000 0.00 0.00 0.00 2.15
7098 13677 1.400142 CAAAGTGCGGCGGATGATTTA 59.600 47.619 9.78 0.00 0.00 1.40
7104 13685 1.377202 ATCACAAAGTGCGGCGGAT 60.377 52.632 9.78 0.00 32.98 4.18
7302 15579 1.526917 GGATTGGCCACCATCTCCG 60.527 63.158 3.88 0.00 36.34 4.63
7361 15638 1.135315 TTCTTGCCTCGCATGAATTGC 60.135 47.619 9.99 0.00 44.00 3.56
7403 15686 9.301153 GGTGGCATTTAAAATTCTACTGTAATG 57.699 33.333 0.00 0.00 0.00 1.90
7563 15931 3.272574 TGCTTGTCCATCCAGAAGATC 57.727 47.619 0.00 0.00 30.59 2.75
7564 15932 3.947612 ATGCTTGTCCATCCAGAAGAT 57.052 42.857 0.00 0.00 34.66 2.40
7565 15933 3.726557 AATGCTTGTCCATCCAGAAGA 57.273 42.857 0.00 0.00 0.00 2.87
7566 15934 3.881688 CCTAATGCTTGTCCATCCAGAAG 59.118 47.826 0.00 0.00 0.00 2.85
7696 16185 3.884693 TGTTATGATCGCAATGCAGGAAT 59.115 39.130 5.91 0.00 0.00 3.01
7885 16558 1.982226 ACAAGGGTGCACACATACCTA 59.018 47.619 23.57 0.00 35.63 3.08
7888 16561 2.161609 GCTTACAAGGGTGCACACATAC 59.838 50.000 23.57 1.02 0.00 2.39
7889 16562 2.039746 AGCTTACAAGGGTGCACACATA 59.960 45.455 23.57 7.79 0.00 2.29
7939 16612 6.595716 ACATCAGTTCTGGTTATTGCTAACTC 59.404 38.462 0.00 0.00 37.86 3.01
8344 17108 1.409412 CGACAAGACACAAGGAGTCG 58.591 55.000 0.00 0.00 42.00 4.18
8386 17155 1.338769 ACAGTCTGGGGTTTATCACGC 60.339 52.381 4.53 0.00 37.62 5.34
8469 17239 8.655092 CAAGAACTCAAGAAATAGCTAGACAAG 58.345 37.037 0.00 0.00 0.00 3.16
8497 17267 6.136071 GCAGTGTCGGCTAAATAATTACATG 58.864 40.000 0.00 0.00 0.00 3.21
8498 17268 5.238650 GGCAGTGTCGGCTAAATAATTACAT 59.761 40.000 0.00 0.00 0.00 2.29
8500 17270 4.573201 TGGCAGTGTCGGCTAAATAATTAC 59.427 41.667 0.00 0.00 0.00 1.89
8544 17317 4.634012 AAACTAGAGGCACACATAACCA 57.366 40.909 0.00 0.00 0.00 3.67
8596 17494 8.794406 CAATTTAAATGTTATGCAAGGACGTAC 58.206 33.333 0.39 0.00 0.00 3.67
8600 17498 9.301153 CCTACAATTTAAATGTTATGCAAGGAC 57.699 33.333 0.39 0.00 32.27 3.85
8636 17639 5.986741 ACATAACCGACCCAATTTCAAAAAC 59.013 36.000 0.00 0.00 0.00 2.43
8681 17684 4.100529 CAATTTGCAGGCTAACAATCGAG 58.899 43.478 3.29 0.00 0.00 4.04
8682 17685 3.505680 ACAATTTGCAGGCTAACAATCGA 59.494 39.130 3.29 0.00 0.00 3.59
8683 17686 3.836949 ACAATTTGCAGGCTAACAATCG 58.163 40.909 3.29 0.00 0.00 3.34
8708 17711 5.179452 ACCTGAGGCACACATAAATTAGT 57.821 39.130 0.00 0.00 0.00 2.24
8753 17756 2.790433 TCAATCAAAGAAACCTCCGGG 58.210 47.619 0.00 0.00 38.88 5.73
8985 18048 0.438830 CGTGGCTAAAGAACGCAGAC 59.561 55.000 0.00 0.00 0.00 3.51
9003 18090 0.108472 GGGGACCGAGGAAAACTACG 60.108 60.000 0.00 0.00 40.86 3.51
9061 18148 1.153823 CACTACTGGAACCTCCGCG 60.154 63.158 0.00 0.00 40.17 6.46
9090 18177 1.961394 AGCAGAACCGTAGTGAGTGAA 59.039 47.619 0.00 0.00 0.00 3.18
9091 18178 1.540267 GAGCAGAACCGTAGTGAGTGA 59.460 52.381 0.00 0.00 0.00 3.41
9092 18179 1.542030 AGAGCAGAACCGTAGTGAGTG 59.458 52.381 0.00 0.00 0.00 3.51
9094 18181 2.729467 CGAAGAGCAGAACCGTAGTGAG 60.729 54.545 0.00 0.00 0.00 3.51
9096 18183 1.618861 CGAAGAGCAGAACCGTAGTG 58.381 55.000 0.00 0.00 0.00 2.74
9126 18213 2.034179 GGTTGAAACCCTTGTACTGCAC 59.966 50.000 0.36 0.00 43.43 4.57
9144 18231 1.886655 GCTGGAACTTGGAATCGGGTT 60.887 52.381 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.