Multiple sequence alignment - TraesCS6A01G119500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G119500 chr6A 100.000 3242 0 0 1 3242 91340720 91337479 0.000000e+00 5987.0
1 TraesCS6A01G119500 chr6A 93.440 1311 81 4 991 2297 90755686 90754377 0.000000e+00 1940.0
2 TraesCS6A01G119500 chr6A 77.483 302 22 22 155 428 90756030 90755747 4.360000e-29 139.0
3 TraesCS6A01G119500 chr6A 100.000 28 0 0 71 98 134620 134593 6.000000e-03 52.8
4 TraesCS6A01G119500 chr6B 91.110 1496 115 14 926 2411 148855788 148854301 0.000000e+00 2010.0
5 TraesCS6A01G119500 chr6B 90.592 574 49 3 1755 2326 148853709 148853139 0.000000e+00 756.0
6 TraesCS6A01G119500 chr6B 86.686 353 27 5 3 338 148856345 148855996 1.100000e-99 374.0
7 TraesCS6A01G119500 chr6B 95.506 89 4 0 340 428 148855860 148855772 3.370000e-30 143.0
8 TraesCS6A01G119500 chr6D 91.552 1385 100 12 926 2297 73813053 73811673 0.000000e+00 1893.0
9 TraesCS6A01G119500 chr6D 93.366 829 53 2 975 1803 75023226 75022400 0.000000e+00 1225.0
10 TraesCS6A01G119500 chr6D 88.131 792 94 0 2451 3242 380504712 380503921 0.000000e+00 942.0
11 TraesCS6A01G119500 chr6D 93.599 578 36 1 1835 2411 75020631 75020054 0.000000e+00 861.0
12 TraesCS6A01G119500 chr6D 81.679 786 136 8 2461 3242 55426141 55425360 0.000000e+00 647.0
13 TraesCS6A01G119500 chr6D 87.619 105 8 3 155 256 73813299 73813197 2.040000e-22 117.0
14 TraesCS6A01G119500 chrUn 88.095 798 95 0 2445 3242 81311051 81311848 0.000000e+00 948.0
15 TraesCS6A01G119500 chr5D 88.421 760 88 0 2483 3242 311466181 311466940 0.000000e+00 917.0
16 TraesCS6A01G119500 chr5D 82.161 796 122 17 2457 3242 32755632 32754847 0.000000e+00 665.0
17 TraesCS6A01G119500 chr7D 85.805 789 107 5 2457 3242 614815834 614816620 0.000000e+00 832.0
18 TraesCS6A01G119500 chr7D 90.196 51 5 0 73 123 407855912 407855962 2.090000e-07 67.6
19 TraesCS6A01G119500 chr2D 85.298 789 109 7 2457 3242 563783134 563782350 0.000000e+00 808.0
20 TraesCS6A01G119500 chr2D 81.646 790 137 8 2457 3242 13139606 13140391 0.000000e+00 649.0
21 TraesCS6A01G119500 chr2D 96.203 158 2 3 782 939 86032647 86032800 4.150000e-64 255.0
22 TraesCS6A01G119500 chr2D 94.737 76 4 0 859 934 435079874 435079799 5.680000e-23 119.0
23 TraesCS6A01G119500 chr2D 88.235 68 3 4 489 554 86028921 86028985 3.470000e-10 76.8
24 TraesCS6A01G119500 chr3A 85.054 736 102 7 2510 3242 12639247 12639977 0.000000e+00 743.0
25 TraesCS6A01G119500 chr3B 94.010 384 21 2 557 940 446713432 446713813 6.030000e-162 580.0
26 TraesCS6A01G119500 chr3B 89.922 387 25 9 557 935 221816551 221816931 1.350000e-133 486.0
27 TraesCS6A01G119500 chr3B 91.667 72 6 0 429 500 446710722 446710793 2.060000e-17 100.0
28 TraesCS6A01G119500 chr3B 95.918 49 2 0 429 477 160843438 160843390 2.680000e-11 80.5
29 TraesCS6A01G119500 chr1B 93.211 383 20 2 557 934 612826004 612826385 2.830000e-155 558.0
30 TraesCS6A01G119500 chr1B 97.561 41 1 0 2366 2406 546953998 546954038 1.610000e-08 71.3
31 TraesCS6A01G119500 chr4D 85.901 383 19 7 557 939 164883920 164883573 3.050000e-100 375.0
32 TraesCS6A01G119500 chr4D 97.015 67 2 0 434 500 164888228 164888162 2.640000e-21 113.0
33 TraesCS6A01G119500 chr1A 86.420 81 5 1 54 128 21565787 21565867 2.070000e-12 84.2
34 TraesCS6A01G119500 chr4B 88.060 67 8 0 73 139 463214343 463214277 2.680000e-11 80.5
35 TraesCS6A01G119500 chr4B 92.453 53 4 0 72 124 40865877 40865825 3.470000e-10 76.8
36 TraesCS6A01G119500 chr2B 100.000 39 0 0 2366 2404 779253579 779253541 4.490000e-09 73.1
37 TraesCS6A01G119500 chr5A 95.455 44 2 0 2366 2409 342047189 342047146 1.610000e-08 71.3
38 TraesCS6A01G119500 chr2A 95.556 45 1 1 2363 2407 172214390 172214347 1.610000e-08 71.3
39 TraesCS6A01G119500 chr2A 93.478 46 3 0 2366 2411 60761868 60761913 5.800000e-08 69.4
40 TraesCS6A01G119500 chr2A 95.349 43 1 1 2362 2404 71436621 71436662 2.090000e-07 67.6
41 TraesCS6A01G119500 chr5B 90.196 51 5 0 73 123 16047517 16047467 2.090000e-07 67.6
42 TraesCS6A01G119500 chr5B 95.349 43 1 1 2362 2404 507119334 507119293 2.090000e-07 67.6
43 TraesCS6A01G119500 chr4A 91.667 48 4 0 73 120 534840142 534840189 2.090000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G119500 chr6A 91337479 91340720 3241 True 5987.00 5987 100.0000 1 3242 1 chr6A.!!$R2 3241
1 TraesCS6A01G119500 chr6A 90754377 90756030 1653 True 1039.50 1940 85.4615 155 2297 2 chr6A.!!$R3 2142
2 TraesCS6A01G119500 chr6B 148853139 148856345 3206 True 820.75 2010 90.9735 3 2411 4 chr6B.!!$R1 2408
3 TraesCS6A01G119500 chr6D 75020054 75023226 3172 True 1043.00 1225 93.4825 975 2411 2 chr6D.!!$R4 1436
4 TraesCS6A01G119500 chr6D 73811673 73813299 1626 True 1005.00 1893 89.5855 155 2297 2 chr6D.!!$R3 2142
5 TraesCS6A01G119500 chr6D 380503921 380504712 791 True 942.00 942 88.1310 2451 3242 1 chr6D.!!$R2 791
6 TraesCS6A01G119500 chr6D 55425360 55426141 781 True 647.00 647 81.6790 2461 3242 1 chr6D.!!$R1 781
7 TraesCS6A01G119500 chrUn 81311051 81311848 797 False 948.00 948 88.0950 2445 3242 1 chrUn.!!$F1 797
8 TraesCS6A01G119500 chr5D 311466181 311466940 759 False 917.00 917 88.4210 2483 3242 1 chr5D.!!$F1 759
9 TraesCS6A01G119500 chr5D 32754847 32755632 785 True 665.00 665 82.1610 2457 3242 1 chr5D.!!$R1 785
10 TraesCS6A01G119500 chr7D 614815834 614816620 786 False 832.00 832 85.8050 2457 3242 1 chr7D.!!$F2 785
11 TraesCS6A01G119500 chr2D 563782350 563783134 784 True 808.00 808 85.2980 2457 3242 1 chr2D.!!$R2 785
12 TraesCS6A01G119500 chr2D 13139606 13140391 785 False 649.00 649 81.6460 2457 3242 1 chr2D.!!$F1 785
13 TraesCS6A01G119500 chr3A 12639247 12639977 730 False 743.00 743 85.0540 2510 3242 1 chr3A.!!$F1 732
14 TraesCS6A01G119500 chr3B 446710722 446713813 3091 False 340.00 580 92.8385 429 940 2 chr3B.!!$F2 511

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 3691 0.316196 GTATAGCAGCGCCGCAAAAG 60.316 55.0 19.35 0.0 0.0 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2430 6948 0.103937 CATGCGAGGGGAAGAGTCTC 59.896 60.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.069978 TGGACGTGACAGAAGCAATGA 59.930 47.619 0.00 0.00 0.00 2.57
21 22 2.289631 TGGACGTGACAGAAGCAATGAT 60.290 45.455 0.00 0.00 0.00 2.45
44 45 2.345341 GCATCGCCAATACAGTTTTTGC 59.655 45.455 0.00 0.00 0.00 3.68
50 51 4.619336 CGCCAATACAGTTTTTGCGTTATT 59.381 37.500 12.27 0.00 0.00 1.40
59 60 4.454504 AGTTTTTGCGTTATTCATCCGTCT 59.545 37.500 0.00 0.00 0.00 4.18
71 72 8.665685 GTTATTCATCCGTCTCAAAATAAGTGT 58.334 33.333 0.00 0.00 0.00 3.55
74 75 7.504924 TCATCCGTCTCAAAATAAGTGTTTT 57.495 32.000 0.00 0.00 0.00 2.43
153 154 4.929808 AGAAGTATTTGTTAGTGCTCCACG 59.070 41.667 0.00 0.00 39.64 4.94
231 240 7.620491 TGTATTGGGTACTAGTCTGGTTCATAA 59.380 37.037 0.00 0.00 34.27 1.90
256 265 3.004419 CAGTGTCCGTGTCTAGTTGAAGA 59.996 47.826 0.00 0.00 0.00 2.87
257 266 3.635373 AGTGTCCGTGTCTAGTTGAAGAA 59.365 43.478 0.00 0.00 0.00 2.52
258 267 4.281182 AGTGTCCGTGTCTAGTTGAAGAAT 59.719 41.667 0.00 0.00 0.00 2.40
312 341 0.614812 GGAGTTTTACCTGGCCGGTA 59.385 55.000 18.74 18.74 46.73 4.02
401 563 4.974368 TCACCGTGAAAACAACAAAGAT 57.026 36.364 0.00 0.00 0.00 2.40
413 575 5.121221 ACAACAAAGATAAAGGAAAGGCG 57.879 39.130 0.00 0.00 0.00 5.52
430 592 1.083911 CGCGTCGCAAAAGTTTCGA 60.084 52.632 18.75 0.00 0.00 3.71
464 626 2.411748 CACGACTGTGTGCGTATGATTT 59.588 45.455 0.00 0.00 41.34 2.17
477 639 4.982916 GCGTATGATTTGTACGATCCTTCT 59.017 41.667 9.57 0.00 45.69 2.85
495 657 4.819088 CCTTCTAGCAAAGCTAATCCTTCC 59.181 45.833 0.01 0.00 40.82 3.46
500 662 2.027385 CAAAGCTAATCCTTCCTGCCC 58.973 52.381 0.00 0.00 0.00 5.36
516 710 2.046892 CCGTGAGTCCAGCCCAAG 60.047 66.667 0.00 0.00 0.00 3.61
518 712 2.360475 GTGAGTCCAGCCCAAGCC 60.360 66.667 0.00 0.00 41.25 4.35
519 713 3.650950 TGAGTCCAGCCCAAGCCC 61.651 66.667 0.00 0.00 41.25 5.19
520 714 3.650950 GAGTCCAGCCCAAGCCCA 61.651 66.667 0.00 0.00 41.25 5.36
521 715 3.185203 AGTCCAGCCCAAGCCCAA 61.185 61.111 0.00 0.00 41.25 4.12
522 716 2.203625 GTCCAGCCCAAGCCCAAA 60.204 61.111 0.00 0.00 41.25 3.28
523 717 2.203625 TCCAGCCCAAGCCCAAAC 60.204 61.111 0.00 0.00 41.25 2.93
524 718 2.523902 CCAGCCCAAGCCCAAACA 60.524 61.111 0.00 0.00 41.25 2.83
525 719 2.576832 CCAGCCCAAGCCCAAACAG 61.577 63.158 0.00 0.00 41.25 3.16
554 748 0.399075 AACCCAGTCTACCCAAACCG 59.601 55.000 0.00 0.00 0.00 4.44
555 749 0.765519 ACCCAGTCTACCCAAACCGT 60.766 55.000 0.00 0.00 0.00 4.83
560 3312 3.428282 CTACCCAAACCGTGCGGC 61.428 66.667 10.87 0.00 39.32 6.53
636 3388 7.437862 GCTGAAGACGATGAAAGAGATAGAAAT 59.562 37.037 0.00 0.00 0.00 2.17
747 3499 1.514443 CGCGAGAGAAAGACGGGAC 60.514 63.158 0.00 0.00 41.18 4.46
774 3526 1.202417 AGATGGCGTTGGACTATGTCG 60.202 52.381 0.00 0.00 32.65 4.35
788 3540 1.330655 ATGTCGATTCGGGCTGGTCT 61.331 55.000 6.18 0.00 0.00 3.85
814 3566 2.991540 GGGTTGGTCTTGGGCTGC 60.992 66.667 0.00 0.00 0.00 5.25
838 3590 2.176247 TTAGGTGGATGGTCCTCTCC 57.824 55.000 4.54 4.54 37.46 3.71
845 3597 1.613630 ATGGTCCTCTCCGTTGCCT 60.614 57.895 0.00 0.00 0.00 4.75
847 3599 2.579738 GTCCTCTCCGTTGCCTCC 59.420 66.667 0.00 0.00 0.00 4.30
848 3600 1.985116 GTCCTCTCCGTTGCCTCCT 60.985 63.158 0.00 0.00 0.00 3.69
849 3601 1.984570 TCCTCTCCGTTGCCTCCTG 60.985 63.158 0.00 0.00 0.00 3.86
850 3602 2.125350 CTCTCCGTTGCCTCCTGC 60.125 66.667 0.00 0.00 41.77 4.85
851 3603 2.604686 TCTCCGTTGCCTCCTGCT 60.605 61.111 0.00 0.00 42.00 4.24
852 3604 2.435586 CTCCGTTGCCTCCTGCTG 60.436 66.667 0.00 0.00 42.00 4.41
855 3607 4.711949 CGTTGCCTCCTGCTGCCT 62.712 66.667 0.00 0.00 42.00 4.75
934 3686 2.050714 TACGTATAGCAGCGCCGC 60.051 61.111 7.75 7.75 0.00 6.53
938 3690 1.719117 GTATAGCAGCGCCGCAAAA 59.281 52.632 19.35 2.89 0.00 2.44
939 3691 0.316196 GTATAGCAGCGCCGCAAAAG 60.316 55.000 19.35 0.00 0.00 2.27
940 3692 0.742990 TATAGCAGCGCCGCAAAAGT 60.743 50.000 19.35 0.00 0.00 2.66
941 3693 1.586154 ATAGCAGCGCCGCAAAAGTT 61.586 50.000 19.35 0.00 0.00 2.66
942 3694 1.791103 TAGCAGCGCCGCAAAAGTTT 61.791 50.000 19.35 0.00 0.00 2.66
943 3695 2.237066 GCAGCGCCGCAAAAGTTTT 61.237 52.632 13.36 0.00 0.00 2.43
944 3696 1.761244 GCAGCGCCGCAAAAGTTTTT 61.761 50.000 13.36 0.00 0.00 1.94
945 3697 1.482278 CAGCGCCGCAAAAGTTTTTA 58.518 45.000 13.36 0.00 0.00 1.52
946 3698 1.189227 CAGCGCCGCAAAAGTTTTTAC 59.811 47.619 13.36 0.00 0.00 2.01
947 3699 1.066454 AGCGCCGCAAAAGTTTTTACT 59.934 42.857 13.36 0.00 0.00 2.24
948 3700 1.189227 GCGCCGCAAAAGTTTTTACTG 59.811 47.619 3.15 0.00 0.00 2.74
949 3701 1.189227 CGCCGCAAAAGTTTTTACTGC 59.811 47.619 0.00 0.00 0.00 4.40
950 3702 1.189227 GCCGCAAAAGTTTTTACTGCG 59.811 47.619 20.27 20.27 38.78 5.18
951 3703 1.189227 CCGCAAAAGTTTTTACTGCGC 59.811 47.619 21.32 0.00 38.17 6.09
952 3704 1.137287 CGCAAAAGTTTTTACTGCGCG 60.137 47.619 16.72 14.42 34.79 6.86
953 3705 1.849829 GCAAAAGTTTTTACTGCGCGT 59.150 42.857 8.43 6.51 0.00 6.01
954 3706 2.346285 GCAAAAGTTTTTACTGCGCGTG 60.346 45.455 8.43 3.52 0.00 5.34
955 3707 2.836479 AAAGTTTTTACTGCGCGTGT 57.164 40.000 8.43 10.13 0.00 4.49
956 3708 2.836479 AAGTTTTTACTGCGCGTGTT 57.164 40.000 8.43 0.00 0.00 3.32
957 3709 2.836479 AGTTTTTACTGCGCGTGTTT 57.164 40.000 8.43 0.00 0.00 2.83
958 3710 3.139603 AGTTTTTACTGCGCGTGTTTT 57.860 38.095 8.43 0.00 0.00 2.43
959 3711 3.503891 AGTTTTTACTGCGCGTGTTTTT 58.496 36.364 8.43 0.00 0.00 1.94
960 3712 3.302170 AGTTTTTACTGCGCGTGTTTTTG 59.698 39.130 8.43 0.00 0.00 2.44
961 3713 2.546195 TTTACTGCGCGTGTTTTTGT 57.454 40.000 8.43 0.00 0.00 2.83
962 3714 3.670311 TTTACTGCGCGTGTTTTTGTA 57.330 38.095 8.43 0.00 0.00 2.41
963 3715 3.881780 TTACTGCGCGTGTTTTTGTAT 57.118 38.095 8.43 0.00 0.00 2.29
964 3716 2.766970 ACTGCGCGTGTTTTTGTATT 57.233 40.000 8.43 0.00 0.00 1.89
965 3717 3.073144 ACTGCGCGTGTTTTTGTATTT 57.927 38.095 8.43 0.00 0.00 1.40
966 3718 3.440228 ACTGCGCGTGTTTTTGTATTTT 58.560 36.364 8.43 0.00 0.00 1.82
967 3719 3.241784 ACTGCGCGTGTTTTTGTATTTTG 59.758 39.130 8.43 0.00 0.00 2.44
968 3720 3.435566 TGCGCGTGTTTTTGTATTTTGA 58.564 36.364 8.43 0.00 0.00 2.69
969 3721 4.045104 TGCGCGTGTTTTTGTATTTTGAT 58.955 34.783 8.43 0.00 0.00 2.57
970 3722 4.085363 TGCGCGTGTTTTTGTATTTTGATG 60.085 37.500 8.43 0.00 0.00 3.07
971 3723 4.085312 GCGCGTGTTTTTGTATTTTGATGT 60.085 37.500 8.43 0.00 0.00 3.06
972 3724 5.353894 CGCGTGTTTTTGTATTTTGATGTG 58.646 37.500 0.00 0.00 0.00 3.21
973 3725 5.172232 CGCGTGTTTTTGTATTTTGATGTGA 59.828 36.000 0.00 0.00 0.00 3.58
974 3726 6.129221 CGCGTGTTTTTGTATTTTGATGTGAT 60.129 34.615 0.00 0.00 0.00 3.06
975 3727 7.219922 GCGTGTTTTTGTATTTTGATGTGATC 58.780 34.615 0.00 0.00 0.00 2.92
976 3728 7.428504 CGTGTTTTTGTATTTTGATGTGATCG 58.571 34.615 0.00 0.00 0.00 3.69
977 3729 7.112844 CGTGTTTTTGTATTTTGATGTGATCGT 59.887 33.333 0.00 0.00 0.00 3.73
978 3730 8.207252 GTGTTTTTGTATTTTGATGTGATCGTG 58.793 33.333 0.00 0.00 0.00 4.35
979 3731 8.131731 TGTTTTTGTATTTTGATGTGATCGTGA 58.868 29.630 0.00 0.00 0.00 4.35
997 3755 4.908736 CGTGAGGCGAATTCAAACATTAT 58.091 39.130 6.22 0.00 44.77 1.28
1128 3886 3.109547 GCCGTCATCGACAACGCA 61.110 61.111 14.19 0.00 39.71 5.24
1167 3925 3.003763 GGCCGTCACCTCCTCCTT 61.004 66.667 0.00 0.00 0.00 3.36
1181 3939 0.911769 CTCCTTGGCATCTACCACCA 59.088 55.000 0.00 0.00 40.19 4.17
1358 4116 1.827789 GCCTTGTCCTTGTGTGCCA 60.828 57.895 0.00 0.00 0.00 4.92
1405 4163 1.674322 AACCCATTCACCGGCTTCG 60.674 57.895 0.00 0.00 0.00 3.79
1461 4219 0.889306 ACGAGTACCTCTTGCACTCC 59.111 55.000 0.00 0.00 36.20 3.85
1523 4287 0.373716 GTGCTCGCCGTGAAAATAGG 59.626 55.000 0.00 0.00 0.00 2.57
1564 4328 4.142600 CCCTTCAAAATTACTGCTCGAAGG 60.143 45.833 8.06 8.06 44.93 3.46
1680 4444 2.699768 CCATTGGTTGTGCGGCGAT 61.700 57.895 12.98 0.00 0.00 4.58
1709 4473 4.276183 AGATTACGACTCGTCAGCATACAT 59.724 41.667 7.52 0.00 41.54 2.29
1711 4475 5.684550 TTACGACTCGTCAGCATACATAT 57.315 39.130 7.52 0.00 41.54 1.78
1718 4482 7.220741 ACTCGTCAGCATACATATACTCATT 57.779 36.000 0.00 0.00 0.00 2.57
1777 4541 1.304713 ACAGGCCAGGCAAGAATGG 60.305 57.895 15.19 0.00 39.73 3.16
1803 4567 3.568007 GGCTACCAAATCACTTGTTGACA 59.432 43.478 0.00 0.00 36.92 3.58
1804 4568 4.218417 GGCTACCAAATCACTTGTTGACAT 59.782 41.667 0.00 0.00 36.92 3.06
1892 6406 7.201565 GCTATCTTTGCTACGAACAGAGAAATT 60.202 37.037 0.00 0.00 32.66 1.82
1940 6454 0.320247 GCTAGAGATCATGGTGGCGG 60.320 60.000 0.00 0.00 0.00 6.13
1943 6457 4.552365 AGATCATGGTGGCGGCGG 62.552 66.667 9.78 0.00 0.00 6.13
2029 6546 0.773644 AGGCCTGGCATATTTCCGAT 59.226 50.000 22.05 0.00 0.00 4.18
2048 6565 0.250124 TCGTCGTGCAAAGATTGGGT 60.250 50.000 0.00 0.00 0.00 4.51
2052 6569 3.592059 GTCGTGCAAAGATTGGGTAGTA 58.408 45.455 0.00 0.00 0.00 1.82
2055 6572 5.813672 GTCGTGCAAAGATTGGGTAGTATTA 59.186 40.000 0.00 0.00 0.00 0.98
2058 6575 6.201044 CGTGCAAAGATTGGGTAGTATTAGAG 59.799 42.308 0.00 0.00 0.00 2.43
2061 6578 7.125811 TGCAAAGATTGGGTAGTATTAGAGACT 59.874 37.037 0.00 0.00 0.00 3.24
2103 6620 4.339247 CCCAGGAGCAATCGTTTGATAATT 59.661 41.667 10.37 0.00 34.60 1.40
2107 6624 5.652014 AGGAGCAATCGTTTGATAATTTGGA 59.348 36.000 10.37 0.00 34.60 3.53
2124 6641 9.728100 ATAATTTGGATTCCTTTCCTTGGATTA 57.272 29.630 3.95 0.00 36.68 1.75
2148 6665 4.193826 TGTTCTTGATCTAGTGAGCACC 57.806 45.455 4.06 0.00 38.42 5.01
2166 6683 1.134560 ACCGAGATACAAAGAGCCGAC 59.865 52.381 0.00 0.00 0.00 4.79
2345 6863 6.558775 ACATCTGCTACCTCCATTCCTAAATA 59.441 38.462 0.00 0.00 0.00 1.40
2411 6929 8.833231 TTCTTTACAGAGGAAGTATTTCACAG 57.167 34.615 0.03 0.00 34.90 3.66
2412 6930 8.190326 TCTTTACAGAGGAAGTATTTCACAGA 57.810 34.615 0.03 0.00 34.90 3.41
2413 6931 8.307483 TCTTTACAGAGGAAGTATTTCACAGAG 58.693 37.037 0.03 0.00 34.90 3.35
2414 6932 5.413309 ACAGAGGAAGTATTTCACAGAGG 57.587 43.478 0.03 0.00 34.90 3.69
2416 6934 5.544176 ACAGAGGAAGTATTTCACAGAGGAA 59.456 40.000 0.03 0.00 34.90 3.36
2417 6935 6.043243 ACAGAGGAAGTATTTCACAGAGGAAA 59.957 38.462 0.03 0.00 40.72 3.13
2419 6937 7.279758 CAGAGGAAGTATTTCACAGAGGAAATC 59.720 40.741 4.57 0.00 44.19 2.17
2420 6938 7.020827 AGGAAGTATTTCACAGAGGAAATCA 57.979 36.000 4.57 0.00 44.19 2.57
2422 6940 6.655003 GGAAGTATTTCACAGAGGAAATCACA 59.345 38.462 4.57 0.00 44.19 3.58
2426 6944 9.082313 AGTATTTCACAGAGGAAATCACAATTT 57.918 29.630 4.57 0.00 44.19 1.82
2429 6947 7.452880 TTCACAGAGGAAATCACAATTTAGG 57.547 36.000 0.00 0.00 35.21 2.69
2430 6948 5.945784 TCACAGAGGAAATCACAATTTAGGG 59.054 40.000 0.00 0.00 35.21 3.53
2431 6949 5.945784 CACAGAGGAAATCACAATTTAGGGA 59.054 40.000 0.00 0.00 35.21 4.20
2432 6950 6.094603 CACAGAGGAAATCACAATTTAGGGAG 59.905 42.308 0.00 0.00 35.21 4.30
2433 6951 6.012508 ACAGAGGAAATCACAATTTAGGGAGA 60.013 38.462 0.00 0.00 35.21 3.71
2434 6952 6.317391 CAGAGGAAATCACAATTTAGGGAGAC 59.683 42.308 0.00 0.00 35.21 3.36
2435 6953 6.216456 AGAGGAAATCACAATTTAGGGAGACT 59.784 38.462 0.00 0.00 35.21 3.24
2436 6954 6.418946 AGGAAATCACAATTTAGGGAGACTC 58.581 40.000 0.00 0.00 35.21 3.36
2437 6955 6.216456 AGGAAATCACAATTTAGGGAGACTCT 59.784 38.462 1.74 0.00 35.21 3.24
2438 6956 6.887002 GGAAATCACAATTTAGGGAGACTCTT 59.113 38.462 1.74 0.00 35.21 2.85
2439 6957 7.066404 GGAAATCACAATTTAGGGAGACTCTTC 59.934 40.741 1.74 0.00 35.21 2.87
2446 6964 3.212275 GGAGACTCTTCCCCTCGC 58.788 66.667 1.74 0.00 0.00 5.03
2481 7000 3.934391 CTCTCGCGACAACACCCCC 62.934 68.421 3.71 0.00 0.00 5.40
2559 7143 4.874977 GAGGGGTGCTCGCGCTAC 62.875 72.222 5.56 0.00 36.97 3.58
2603 7187 3.499737 CAACCTGCGCCGACCATC 61.500 66.667 4.18 0.00 0.00 3.51
2653 7490 6.423712 GCTGATTTCTCCAGTTCCGTAGGT 62.424 50.000 0.00 0.00 40.53 3.08
2670 7507 4.408821 TGGTGCTCATGGCGTCCC 62.409 66.667 13.27 8.78 45.43 4.46
2675 7512 4.147449 CTCATGGCGTCCCGAGCA 62.147 66.667 0.00 0.00 36.08 4.26
2744 7728 3.950794 GATCCGGTGCGTGCAGGAA 62.951 63.158 11.29 0.00 36.25 3.36
2745 7729 3.545124 ATCCGGTGCGTGCAGGAAA 62.545 57.895 11.29 0.00 36.25 3.13
2746 7730 2.819984 ATCCGGTGCGTGCAGGAAAT 62.820 55.000 11.29 0.00 36.25 2.17
2840 7824 1.741770 CCAACGAAGAAGGGCGGAG 60.742 63.158 0.00 0.00 0.00 4.63
2943 7927 1.969064 CCACCGGCCAAATTCGTGA 60.969 57.895 0.00 0.00 0.00 4.35
3055 8042 4.700448 TCTACGGGCGGGGTGGAA 62.700 66.667 0.00 0.00 0.00 3.53
3085 8072 0.106708 GCCATAGATCGCTGGAACCA 59.893 55.000 17.74 0.00 34.24 3.67
3201 8303 6.191661 TGTTTTCGCAATCGATGATGTTATC 58.808 36.000 0.00 0.00 45.04 1.75
3202 8304 6.037062 TGTTTTCGCAATCGATGATGTTATCT 59.963 34.615 0.00 0.00 45.04 1.98
3208 8310 3.643159 TCGATGATGTTATCTGACCCG 57.357 47.619 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.069978 TCATTGCTTCTGTCACGTCCA 59.930 47.619 0.00 0.00 0.00 4.02
1 2 1.795768 TCATTGCTTCTGTCACGTCC 58.204 50.000 0.00 0.00 0.00 4.79
20 21 4.454728 AAAACTGTATTGGCGATGCAAT 57.545 36.364 6.95 0.00 29.58 3.56
21 22 3.932545 AAAACTGTATTGGCGATGCAA 57.067 38.095 6.95 0.00 29.58 4.08
35 36 4.472286 ACGGATGAATAACGCAAAAACTG 58.528 39.130 0.00 0.00 0.00 3.16
44 45 7.846107 CACTTATTTTGAGACGGATGAATAACG 59.154 37.037 0.00 0.00 0.00 3.18
50 51 7.504924 AAAACACTTATTTTGAGACGGATGA 57.495 32.000 0.00 0.00 30.56 2.92
124 125 9.162764 GGAGCACTAACAAATACTTCTTTCATA 57.837 33.333 0.00 0.00 0.00 2.15
128 129 6.073222 CGTGGAGCACTAACAAATACTTCTTT 60.073 38.462 0.00 0.00 31.34 2.52
129 130 5.408604 CGTGGAGCACTAACAAATACTTCTT 59.591 40.000 0.00 0.00 31.34 2.52
130 131 4.929808 CGTGGAGCACTAACAAATACTTCT 59.070 41.667 0.00 0.00 31.34 2.85
132 133 4.638304 ACGTGGAGCACTAACAAATACTT 58.362 39.130 0.00 0.00 31.34 2.24
153 154 6.708949 TGGACACAACTAGGACTCAAAATTAC 59.291 38.462 0.00 0.00 0.00 1.89
212 213 6.726490 TGGATTATGAACCAGACTAGTACC 57.274 41.667 0.00 0.00 0.00 3.34
231 240 2.217510 ACTAGACACGGACACTGGAT 57.782 50.000 0.00 0.00 0.00 3.41
256 265 5.756833 ACTTCAACTAGACCGAAAAACGATT 59.243 36.000 0.00 0.00 45.77 3.34
257 266 5.295152 ACTTCAACTAGACCGAAAAACGAT 58.705 37.500 0.00 0.00 45.77 3.73
258 267 4.685924 ACTTCAACTAGACCGAAAAACGA 58.314 39.130 0.00 0.00 45.77 3.85
312 341 1.881973 TGCTGTCTTACCGACTTACGT 59.118 47.619 0.00 0.00 43.25 3.57
338 455 0.465705 AGATACATGCGTCCACCCAG 59.534 55.000 0.00 0.00 0.00 4.45
401 563 3.864944 CGACGCGCCTTTCCTTTA 58.135 55.556 5.73 0.00 0.00 1.85
413 575 1.458746 TTTCGAAACTTTTGCGACGC 58.541 45.000 14.19 14.19 33.33 5.19
430 592 2.682856 ACAGTCGTGTGTGAAGCAATTT 59.317 40.909 0.00 0.00 34.75 1.82
456 618 7.145985 TGCTAGAAGGATCGTACAAATCATAC 58.854 38.462 0.00 0.00 0.00 2.39
459 621 5.592104 TGCTAGAAGGATCGTACAAATCA 57.408 39.130 0.00 0.00 0.00 2.57
464 626 3.447586 AGCTTTGCTAGAAGGATCGTACA 59.552 43.478 0.00 0.00 36.99 2.90
477 639 3.545703 GCAGGAAGGATTAGCTTTGCTA 58.454 45.455 0.00 0.00 40.44 3.49
495 657 4.767255 GGCTGGACTCACGGGCAG 62.767 72.222 0.00 0.00 41.55 4.85
500 662 2.743928 GCTTGGGCTGGACTCACG 60.744 66.667 0.00 0.00 35.22 4.35
516 710 1.977293 TTGGGTTTGGCTGTTTGGGC 61.977 55.000 0.00 0.00 0.00 5.36
518 712 1.662517 GTTTGGGTTTGGCTGTTTGG 58.337 50.000 0.00 0.00 0.00 3.28
519 713 1.662517 GGTTTGGGTTTGGCTGTTTG 58.337 50.000 0.00 0.00 0.00 2.93
520 714 0.544223 GGGTTTGGGTTTGGCTGTTT 59.456 50.000 0.00 0.00 0.00 2.83
521 715 0.618968 TGGGTTTGGGTTTGGCTGTT 60.619 50.000 0.00 0.00 0.00 3.16
522 716 1.002274 TGGGTTTGGGTTTGGCTGT 59.998 52.632 0.00 0.00 0.00 4.40
523 717 1.048160 ACTGGGTTTGGGTTTGGCTG 61.048 55.000 0.00 0.00 0.00 4.85
524 718 0.759060 GACTGGGTTTGGGTTTGGCT 60.759 55.000 0.00 0.00 0.00 4.75
525 719 0.759060 AGACTGGGTTTGGGTTTGGC 60.759 55.000 0.00 0.00 0.00 4.52
593 3345 3.716006 CCGCAGTCGTTGGTGCAG 61.716 66.667 0.00 0.00 39.83 4.41
611 3363 8.754096 CATTTCTATCTCTTTCATCGTCTTCAG 58.246 37.037 0.00 0.00 0.00 3.02
636 3388 1.228003 AACCCCGACAAACATCGCA 60.228 52.632 0.00 0.00 40.87 5.10
724 3476 4.400109 TCTTTCTCTCGCGCGCGT 62.400 61.111 46.54 0.00 40.74 6.01
738 3490 1.746220 CATCTCTTCTCGTCCCGTCTT 59.254 52.381 0.00 0.00 0.00 3.01
742 3494 1.066587 GCCATCTCTTCTCGTCCCG 59.933 63.158 0.00 0.00 0.00 5.14
747 3499 0.173481 TCCAACGCCATCTCTTCTCG 59.827 55.000 0.00 0.00 0.00 4.04
774 3526 1.452108 CCCAAGACCAGCCCGAATC 60.452 63.158 0.00 0.00 0.00 2.52
788 3540 1.080638 AAGACCAACCCATAGCCCAA 58.919 50.000 0.00 0.00 0.00 4.12
814 3566 1.768870 AGGACCATCCACCTAAATCCG 59.231 52.381 0.00 0.00 39.61 4.18
874 3626 1.129326 GTACGATCATACGTGGCAGC 58.871 55.000 0.00 0.00 46.02 5.25
934 3686 2.849473 ACACGCGCAGTAAAAACTTTTG 59.151 40.909 5.73 0.00 0.00 2.44
938 3690 2.836479 AAACACGCGCAGTAAAAACT 57.164 40.000 5.73 0.00 0.00 2.66
939 3691 3.059702 ACAAAAACACGCGCAGTAAAAAC 59.940 39.130 5.73 0.00 0.00 2.43
940 3692 3.243336 ACAAAAACACGCGCAGTAAAAA 58.757 36.364 5.73 0.00 0.00 1.94
941 3693 2.864968 ACAAAAACACGCGCAGTAAAA 58.135 38.095 5.73 0.00 0.00 1.52
942 3694 2.546195 ACAAAAACACGCGCAGTAAA 57.454 40.000 5.73 0.00 0.00 2.01
943 3695 3.881780 ATACAAAAACACGCGCAGTAA 57.118 38.095 5.73 0.00 0.00 2.24
944 3696 3.881780 AATACAAAAACACGCGCAGTA 57.118 38.095 5.73 0.00 0.00 2.74
945 3697 2.766970 AATACAAAAACACGCGCAGT 57.233 40.000 5.73 1.39 0.00 4.40
946 3698 3.483922 TCAAAATACAAAAACACGCGCAG 59.516 39.130 5.73 0.55 0.00 5.18
947 3699 3.435566 TCAAAATACAAAAACACGCGCA 58.564 36.364 5.73 0.00 0.00 6.09
948 3700 4.085312 ACATCAAAATACAAAAACACGCGC 60.085 37.500 5.73 0.00 0.00 6.86
949 3701 5.172232 TCACATCAAAATACAAAAACACGCG 59.828 36.000 3.53 3.53 0.00 6.01
950 3702 6.503616 TCACATCAAAATACAAAAACACGC 57.496 33.333 0.00 0.00 0.00 5.34
951 3703 7.112844 ACGATCACATCAAAATACAAAAACACG 59.887 33.333 0.00 0.00 0.00 4.49
952 3704 8.207252 CACGATCACATCAAAATACAAAAACAC 58.793 33.333 0.00 0.00 0.00 3.32
953 3705 8.131731 TCACGATCACATCAAAATACAAAAACA 58.868 29.630 0.00 0.00 0.00 2.83
954 3706 8.500837 TCACGATCACATCAAAATACAAAAAC 57.499 30.769 0.00 0.00 0.00 2.43
955 3707 7.807433 CCTCACGATCACATCAAAATACAAAAA 59.193 33.333 0.00 0.00 0.00 1.94
956 3708 7.304735 CCTCACGATCACATCAAAATACAAAA 58.695 34.615 0.00 0.00 0.00 2.44
957 3709 6.622679 GCCTCACGATCACATCAAAATACAAA 60.623 38.462 0.00 0.00 0.00 2.83
958 3710 5.163764 GCCTCACGATCACATCAAAATACAA 60.164 40.000 0.00 0.00 0.00 2.41
959 3711 4.332543 GCCTCACGATCACATCAAAATACA 59.667 41.667 0.00 0.00 0.00 2.29
960 3712 4.837567 GCCTCACGATCACATCAAAATAC 58.162 43.478 0.00 0.00 0.00 1.89
975 3727 2.900122 ATGTTTGAATTCGCCTCACG 57.100 45.000 0.04 0.00 45.62 4.35
976 3728 6.321717 TGAATAATGTTTGAATTCGCCTCAC 58.678 36.000 0.04 0.00 33.28 3.51
977 3729 6.507958 TGAATAATGTTTGAATTCGCCTCA 57.492 33.333 0.04 0.00 33.28 3.86
978 3730 6.418819 CCATGAATAATGTTTGAATTCGCCTC 59.581 38.462 0.04 0.00 34.11 4.70
979 3731 6.275335 CCATGAATAATGTTTGAATTCGCCT 58.725 36.000 0.04 0.00 34.11 5.52
989 3741 1.535860 GCGGCGCCATGAATAATGTTT 60.536 47.619 28.98 0.00 34.11 2.83
1035 3793 0.677098 CGAGGAAGACGTGGAGGAGA 60.677 60.000 0.00 0.00 0.00 3.71
1066 3824 2.420890 GCAGCGGAGGATGGAGAG 59.579 66.667 0.00 0.00 0.00 3.20
1167 3925 0.613572 TCTCGTGGTGGTAGATGCCA 60.614 55.000 0.00 0.00 35.93 4.92
1181 3939 2.443390 CCCCCGGGTACATCTCGT 60.443 66.667 21.85 0.00 38.54 4.18
1523 4287 2.409870 GCCAGTATGCCAGTGTGCC 61.410 63.158 1.78 0.00 31.97 5.01
1551 4315 1.295423 GCCACCCTTCGAGCAGTAA 59.705 57.895 0.00 0.00 0.00 2.24
1675 4439 1.852895 GTCGTAATCTGACACATCGCC 59.147 52.381 0.00 0.00 36.37 5.54
1680 4444 2.809696 TGACGAGTCGTAATCTGACACA 59.190 45.455 19.93 5.97 41.37 3.72
1709 4473 7.426410 GGTGATCTTGTCGAAGAATGAGTATA 58.574 38.462 0.00 0.00 41.64 1.47
1711 4475 5.394224 GGGTGATCTTGTCGAAGAATGAGTA 60.394 44.000 0.00 0.00 41.64 2.59
1718 4482 5.833667 ACTATATGGGTGATCTTGTCGAAGA 59.166 40.000 0.00 0.00 42.53 2.87
1777 4541 2.558359 ACAAGTGATTTGGTAGCCTTGC 59.442 45.455 6.35 0.00 41.25 4.01
1803 4567 6.604396 TCTTGGTTGATACTTCATGATTGCAT 59.396 34.615 0.00 0.00 34.29 3.96
1804 4568 5.945191 TCTTGGTTGATACTTCATGATTGCA 59.055 36.000 0.00 0.00 0.00 4.08
1821 4585 4.082026 GCCAACATTAGCATCTTCTTGGTT 60.082 41.667 0.00 0.00 31.16 3.67
1892 6406 5.476983 ACCAGATTGATACCTCCAATCCTA 58.523 41.667 10.99 0.00 46.68 2.94
1943 6457 3.384014 CTCTCCTCCACGTCGTCGC 62.384 68.421 0.99 0.00 41.18 5.19
2029 6546 0.250124 ACCCAATCTTTGCACGACGA 60.250 50.000 0.00 0.00 0.00 4.20
2048 6565 9.223291 ACCACTCTAACCTAGTCTCTAATACTA 57.777 37.037 0.00 0.00 0.00 1.82
2052 6569 8.532819 CAAAACCACTCTAACCTAGTCTCTAAT 58.467 37.037 0.00 0.00 0.00 1.73
2055 6572 5.279556 GCAAAACCACTCTAACCTAGTCTCT 60.280 44.000 0.00 0.00 0.00 3.10
2058 6575 4.001652 GGCAAAACCACTCTAACCTAGTC 58.998 47.826 0.00 0.00 38.86 2.59
2061 6578 2.040679 GGGGCAAAACCACTCTAACCTA 59.959 50.000 0.00 0.00 39.64 3.08
2091 6608 7.396055 AGGAAAGGAATCCAAATTATCAAACGA 59.604 33.333 0.61 0.00 42.27 3.85
2103 6620 7.457535 ACAAATAATCCAAGGAAAGGAATCCAA 59.542 33.333 0.61 0.00 42.27 3.53
2107 6624 8.670521 AGAACAAATAATCCAAGGAAAGGAAT 57.329 30.769 0.00 0.00 38.93 3.01
2124 6641 5.645497 GGTGCTCACTAGATCAAGAACAAAT 59.355 40.000 0.00 0.00 0.00 2.32
2148 6665 1.467875 CGTCGGCTCTTTGTATCTCG 58.532 55.000 0.00 0.00 0.00 4.04
2166 6683 0.752658 TGTGTCCATGGCTATCTCCG 59.247 55.000 6.96 0.00 0.00 4.63
2304 6822 7.452880 AGCAGATGTGATTTAGCAAAACTTA 57.547 32.000 0.00 0.00 0.00 2.24
2345 6863 8.475639 ACATCACGTATGGAGTACTTAATTCTT 58.524 33.333 0.00 0.00 40.16 2.52
2363 6881 8.662141 AGAAATATAAAAGCGTTTACATCACGT 58.338 29.630 7.00 0.00 39.92 4.49
2364 6882 9.485591 AAGAAATATAAAAGCGTTTACATCACG 57.514 29.630 7.00 0.00 40.75 4.35
2393 6911 5.667539 TCCTCTGTGAAATACTTCCTCTG 57.332 43.478 0.00 0.00 0.00 3.35
2394 6912 6.688073 TTTCCTCTGTGAAATACTTCCTCT 57.312 37.500 0.00 0.00 29.56 3.69
2411 6929 6.418946 AGTCTCCCTAAATTGTGATTTCCTC 58.581 40.000 0.00 0.00 36.82 3.71
2412 6930 6.216456 AGAGTCTCCCTAAATTGTGATTTCCT 59.784 38.462 0.00 0.00 36.82 3.36
2413 6931 6.418946 AGAGTCTCCCTAAATTGTGATTTCC 58.581 40.000 0.00 0.00 36.82 3.13
2414 6932 7.066404 GGAAGAGTCTCCCTAAATTGTGATTTC 59.934 40.741 0.00 0.00 36.82 2.17
2416 6934 6.418946 GGAAGAGTCTCCCTAAATTGTGATT 58.581 40.000 0.00 0.00 0.00 2.57
2417 6935 5.995446 GGAAGAGTCTCCCTAAATTGTGAT 58.005 41.667 0.00 0.00 0.00 3.06
2429 6947 1.045911 ATGCGAGGGGAAGAGTCTCC 61.046 60.000 0.00 0.00 46.14 3.71
2430 6948 0.103937 CATGCGAGGGGAAGAGTCTC 59.896 60.000 0.00 0.00 0.00 3.36
2431 6949 1.965754 GCATGCGAGGGGAAGAGTCT 61.966 60.000 0.00 0.00 0.00 3.24
2432 6950 1.522580 GCATGCGAGGGGAAGAGTC 60.523 63.158 0.00 0.00 0.00 3.36
2433 6951 2.586792 GCATGCGAGGGGAAGAGT 59.413 61.111 0.00 0.00 0.00 3.24
2434 6952 2.203126 GGCATGCGAGGGGAAGAG 60.203 66.667 12.44 0.00 0.00 2.85
2435 6953 2.688666 AGGCATGCGAGGGGAAGA 60.689 61.111 12.44 0.00 0.00 2.87
2436 6954 2.203126 GAGGCATGCGAGGGGAAG 60.203 66.667 12.44 0.00 0.00 3.46
2437 6955 2.688666 AGAGGCATGCGAGGGGAA 60.689 61.111 12.44 0.00 0.00 3.97
2438 6956 3.157252 GAGAGGCATGCGAGGGGA 61.157 66.667 12.44 0.00 0.00 4.81
2439 6957 4.247380 GGAGAGGCATGCGAGGGG 62.247 72.222 12.44 0.00 0.00 4.79
2441 6959 3.160047 AGGGAGAGGCATGCGAGG 61.160 66.667 12.44 0.00 0.00 4.63
2442 6960 2.086251 GAGAGGGAGAGGCATGCGAG 62.086 65.000 12.44 0.00 0.00 5.03
2443 6961 2.042537 AGAGGGAGAGGCATGCGA 60.043 61.111 12.44 0.00 0.00 5.10
2446 6964 2.086251 GAGCGAGAGGGAGAGGCATG 62.086 65.000 0.00 0.00 0.00 4.06
2496 7015 4.760047 GATCTGTGGTGGCGGCGT 62.760 66.667 9.37 0.00 0.00 5.68
2559 7143 4.828296 GGGAGCCATGGGTGCAGG 62.828 72.222 32.58 0.00 35.67 4.85
2603 7187 0.105964 TCTCTGGGATTCCCTCTCGG 60.106 60.000 22.38 8.47 45.70 4.63
2653 7490 4.408821 GGGACGCCATGAGCACCA 62.409 66.667 15.46 0.00 44.04 4.17
2744 7728 1.153168 CCGGTCCGCCATCTTCATT 60.153 57.895 5.50 0.00 34.09 2.57
2745 7729 2.505982 CCGGTCCGCCATCTTCAT 59.494 61.111 5.50 0.00 34.09 2.57
2746 7730 3.781307 CCCGGTCCGCCATCTTCA 61.781 66.667 5.50 0.00 34.09 3.02
2774 7758 1.003355 CATCTCCGGTGTGGTTGCT 60.003 57.895 0.00 0.00 39.52 3.91
2840 7824 0.961753 CCAGCTTCCTTTGTTCCACC 59.038 55.000 0.00 0.00 0.00 4.61
2934 7918 1.472480 CCTCGCCCAAATCACGAATTT 59.528 47.619 0.00 0.00 38.11 1.82
2943 7927 3.995506 CTTCCGCCCTCGCCCAAAT 62.996 63.158 0.00 0.00 0.00 2.32
3011 7995 2.434185 GCGCTCGGTGGAATCACA 60.434 61.111 0.00 0.00 45.32 3.58
3055 8042 3.336468 CGATCTATGGCGAGGTAGTAGT 58.664 50.000 0.00 0.00 0.00 2.73
3085 8072 1.375523 GCGATCTCCAAACCACGGT 60.376 57.895 0.00 0.00 0.00 4.83
3130 8213 6.547510 GGATACAAATCCCTTTATCAGTGCTT 59.452 38.462 0.00 0.00 45.37 3.91
3201 8303 2.959707 AGCTTAATCTCTACCGGGTCAG 59.040 50.000 6.32 0.70 0.00 3.51
3202 8304 2.693591 CAGCTTAATCTCTACCGGGTCA 59.306 50.000 6.32 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.