Multiple sequence alignment - TraesCS6A01G119000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G119000 chr6A 100.000 5354 0 0 1 5354 89969508 89974861 0.000000e+00 9888.0
1 TraesCS6A01G119000 chr6A 91.667 108 6 2 1540 1646 287115344 287115449 4.320000e-31 147.0
2 TraesCS6A01G119000 chr6A 92.308 52 4 0 3029 3080 531279799 531279748 2.070000e-09 75.0
3 TraesCS6A01G119000 chr6A 97.561 41 1 0 3029 3069 514704300 514704340 2.680000e-08 71.3
4 TraesCS6A01G119000 chr6D 93.798 1693 80 12 3171 4858 73523600 73525272 0.000000e+00 2521.0
5 TraesCS6A01G119000 chr6D 97.241 1450 38 1 1645 3092 73522154 73523603 0.000000e+00 2455.0
6 TraesCS6A01G119000 chr6D 93.011 1574 71 9 1 1565 73520614 73522157 0.000000e+00 2261.0
7 TraesCS6A01G119000 chr6D 91.593 226 14 4 5130 5354 428936162 428936383 1.870000e-79 307.0
8 TraesCS6A01G119000 chr6D 92.308 52 4 0 3029 3080 386222100 386222049 2.070000e-09 75.0
9 TraesCS6A01G119000 chr6B 95.937 1452 49 3 1645 3092 147884736 147886181 0.000000e+00 2346.0
10 TraesCS6A01G119000 chr6B 92.082 1566 85 11 3171 4729 147886178 147887711 0.000000e+00 2169.0
11 TraesCS6A01G119000 chr6B 94.838 1143 45 7 425 1565 147883609 147884739 0.000000e+00 1772.0
12 TraesCS6A01G119000 chr6B 93.539 356 15 2 1 348 147883225 147883580 1.710000e-144 523.0
13 TraesCS6A01G119000 chr6B 92.857 98 4 3 3091 3186 218219424 218219328 7.230000e-29 139.0
14 TraesCS6A01G119000 chr2A 89.780 499 20 6 4857 5354 660551856 660551388 1.270000e-170 610.0
15 TraesCS6A01G119000 chr2A 88.687 495 28 10 4862 5354 58178124 58178592 3.600000e-161 579.0
16 TraesCS6A01G119000 chr4B 87.424 493 48 12 4868 5353 616611812 616612297 6.060000e-154 555.0
17 TraesCS6A01G119000 chr4B 93.458 107 5 1 1555 1661 630098836 630098732 2.000000e-34 158.0
18 TraesCS6A01G119000 chr4B 88.889 117 9 4 1562 1675 136939875 136939760 2.010000e-29 141.0
19 TraesCS6A01G119000 chr4B 89.474 57 6 0 3028 3084 498391557 498391501 7.440000e-09 73.1
20 TraesCS6A01G119000 chr7B 90.672 268 23 2 4862 5127 52641574 52641841 6.600000e-94 355.0
21 TraesCS6A01G119000 chr7B 90.000 270 23 3 4862 5127 52662008 52662277 3.970000e-91 346.0
22 TraesCS6A01G119000 chr7B 91.031 223 16 2 5132 5354 622627695 622627913 1.130000e-76 298.0
23 TraesCS6A01G119000 chr7B 95.604 91 3 1 3087 3176 462238657 462238747 1.550000e-30 145.0
24 TraesCS6A01G119000 chr7B 85.714 105 15 0 998 1102 575380013 575380117 1.580000e-20 111.0
25 TraesCS6A01G119000 chr7B 100.000 31 0 0 2974 3004 692828850 692828820 2.080000e-04 58.4
26 TraesCS6A01G119000 chr5B 90.262 267 23 3 4862 5127 522784984 522784720 3.970000e-91 346.0
27 TraesCS6A01G119000 chr5B 89.552 268 25 3 4862 5127 522722070 522721804 2.390000e-88 337.0
28 TraesCS6A01G119000 chr5B 91.630 227 14 3 5128 5354 612034562 612034783 5.210000e-80 309.0
29 TraesCS6A01G119000 chr2B 90.805 261 21 3 4868 5127 82712327 82712069 3.970000e-91 346.0
30 TraesCS6A01G119000 chr2B 91.964 224 12 1 5131 5354 120560570 120560353 5.210000e-80 309.0
31 TraesCS6A01G119000 chr3B 89.811 265 27 0 4863 5127 793039584 793039848 1.850000e-89 340.0
32 TraesCS6A01G119000 chr1B 89.474 266 26 2 4863 5127 654103255 654103519 8.590000e-88 335.0
33 TraesCS6A01G119000 chr1B 94.231 104 5 1 1561 1664 296490704 296490602 2.000000e-34 158.0
34 TraesCS6A01G119000 chr1B 97.753 89 1 1 3087 3174 129095892 129095804 9.290000e-33 152.0
35 TraesCS6A01G119000 chr1B 88.983 118 9 3 1558 1673 110607253 110607368 5.590000e-30 143.0
36 TraesCS6A01G119000 chr7D 91.667 228 16 3 5129 5354 625762454 625762228 4.030000e-81 313.0
37 TraesCS6A01G119000 chr7D 97.802 91 0 2 3091 3180 248159818 248159907 7.180000e-34 156.0
38 TraesCS6A01G119000 chr7D 93.137 102 3 4 3088 3187 565123566 565123467 4.320000e-31 147.0
39 TraesCS6A01G119000 chr7D 89.474 114 9 3 1562 1674 343752012 343751901 2.010000e-29 141.0
40 TraesCS6A01G119000 chr7D 85.714 105 15 0 998 1102 535327337 535327441 1.580000e-20 111.0
41 TraesCS6A01G119000 chrUn 89.177 231 21 3 5127 5354 35425029 35425258 8.780000e-73 285.0
42 TraesCS6A01G119000 chrUn 97.753 89 1 1 3088 3175 17148596 17148684 9.290000e-33 152.0
43 TraesCS6A01G119000 chrUn 93.137 102 5 2 3087 3186 41259983 41260084 1.200000e-31 148.0
44 TraesCS6A01G119000 chr3A 96.774 93 3 0 1554 1646 42130178 42130270 7.180000e-34 156.0
45 TraesCS6A01G119000 chr3A 95.833 96 3 1 1559 1653 709065497 709065592 2.580000e-33 154.0
46 TraesCS6A01G119000 chr3A 92.157 102 6 2 3084 3184 158695288 158695188 5.590000e-30 143.0
47 TraesCS6A01G119000 chr7A 94.898 98 5 0 1558 1655 80994170 80994073 2.580000e-33 154.0
48 TraesCS6A01G119000 chr7A 85.714 105 15 0 998 1102 615339168 615339272 1.580000e-20 111.0
49 TraesCS6A01G119000 chr4A 95.833 96 2 2 3089 3183 712733708 712733802 2.580000e-33 154.0
50 TraesCS6A01G119000 chr4A 91.228 57 5 0 3028 3084 60035514 60035458 1.600000e-10 78.7
51 TraesCS6A01G119000 chr4D 89.474 57 6 0 3028 3084 402546470 402546414 7.440000e-09 73.1
52 TraesCS6A01G119000 chr1A 90.566 53 5 0 3028 3080 62577234 62577182 2.680000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G119000 chr6A 89969508 89974861 5353 False 9888.000000 9888 100.000000 1 5354 1 chr6A.!!$F1 5353
1 TraesCS6A01G119000 chr6D 73520614 73525272 4658 False 2412.333333 2521 94.683333 1 4858 3 chr6D.!!$F2 4857
2 TraesCS6A01G119000 chr6B 147883225 147887711 4486 False 1702.500000 2346 94.099000 1 4729 4 chr6B.!!$F1 4728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 468 0.984230 TGACTTGTGGGCTTCCTAGG 59.016 55.000 0.82 0.82 0.0 3.02 F
463 473 1.440618 TGTGGGCTTCCTAGGTTGAA 58.559 50.000 9.08 0.00 0.0 2.69 F
1572 1582 1.867363 ATGCTTTCTACTCCCTCCGT 58.133 50.000 0.00 0.00 0.0 4.69 F
2331 2347 2.062519 GTCTGAGAGGAGAAACGCAAC 58.937 52.381 0.00 0.00 0.0 4.17 F
3110 3126 2.176247 ACTCCCTCGTCCCATAATGT 57.824 50.000 0.00 0.00 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1737 1747 1.233285 AACTCTTCGCTGCAGCCTTG 61.233 55.0 32.07 20.83 37.91 3.61 R
2216 2232 2.027100 GGCCCTTGACAGTAGTTAAGCT 60.027 50.0 0.00 0.00 39.34 3.74 R
2781 2797 0.174162 GCATTTGGATCACTGCACCC 59.826 55.0 0.00 0.00 34.77 4.61 R
3156 3172 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.0 0.00 0.00 0.00 2.74 R
4899 4922 0.029567 GTAGGGTGCGATCTCAGTCG 59.970 60.0 0.00 0.00 44.14 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 137 2.622942 TCTGTCATTCTTGTGCCCAAAC 59.377 45.455 0.00 0.00 0.00 2.93
281 287 3.847671 TTGATAATCCGTATGTGGGCA 57.152 42.857 0.00 0.00 0.00 5.36
300 306 3.193267 GGCAATGTGATGGTGTTGTACAT 59.807 43.478 0.00 0.00 33.73 2.29
316 326 4.318332 TGTACATTTTGTCAGCTCCTCAG 58.682 43.478 0.00 0.00 0.00 3.35
355 365 5.816449 CACTATGGTGTTGTAATGCATGA 57.184 39.130 0.00 0.00 38.54 3.07
356 366 6.381481 CACTATGGTGTTGTAATGCATGAT 57.619 37.500 0.00 0.00 38.54 2.45
357 367 6.203647 CACTATGGTGTTGTAATGCATGATG 58.796 40.000 0.00 0.00 38.54 3.07
358 368 3.507103 TGGTGTTGTAATGCATGATGC 57.493 42.857 11.12 11.12 45.29 3.91
359 369 3.090790 TGGTGTTGTAATGCATGATGCT 58.909 40.909 19.19 1.31 45.31 3.79
430 440 7.285401 AGCTGTTCCTCAGAAAAGAATTTACAA 59.715 33.333 0.00 0.00 46.27 2.41
458 468 0.984230 TGACTTGTGGGCTTCCTAGG 59.016 55.000 0.82 0.82 0.00 3.02
463 473 1.440618 TGTGGGCTTCCTAGGTTGAA 58.559 50.000 9.08 0.00 0.00 2.69
471 481 3.744660 CTTCCTAGGTTGAACAACTGCT 58.255 45.455 9.08 8.95 40.94 4.24
491 501 3.004106 GCTCCCATCAATCAAGTGTATGC 59.996 47.826 0.00 0.00 0.00 3.14
498 508 7.041780 CCCATCAATCAAGTGTATGCTAGTTAC 60.042 40.741 0.00 0.00 0.00 2.50
499 509 7.712639 CCATCAATCAAGTGTATGCTAGTTACT 59.287 37.037 0.00 0.00 0.00 2.24
500 510 9.750125 CATCAATCAAGTGTATGCTAGTTACTA 57.250 33.333 0.00 0.00 0.00 1.82
505 515 8.344446 TCAAGTGTATGCTAGTTACTAGTTCA 57.656 34.615 19.12 10.87 36.53 3.18
517 527 7.578169 AGTTACTAGTTCATAAGCGTTTGAC 57.422 36.000 0.00 0.00 0.00 3.18
552 562 7.326063 GTCAACATCACTAATTTTGTTAGTGCC 59.674 37.037 18.39 2.62 46.90 5.01
578 588 8.183104 CTTTAGGAAAAGGAAAATGGAAGACT 57.817 34.615 0.00 0.00 38.77 3.24
589 599 2.620251 TGGAAGACTTGTGGTGTCAG 57.380 50.000 0.00 0.00 36.94 3.51
615 625 8.870160 CATGATATGCTCTATTACTTCTAGGC 57.130 38.462 0.00 0.00 0.00 3.93
621 631 6.134055 TGCTCTATTACTTCTAGGCTTACCA 58.866 40.000 0.00 0.00 39.06 3.25
638 648 5.296283 GCTTACCACTAGTCTCGAACATCTA 59.704 44.000 0.00 0.00 0.00 1.98
639 649 6.674694 TTACCACTAGTCTCGAACATCTAC 57.325 41.667 0.00 0.00 0.00 2.59
761 771 7.750458 CGTTTTCACATCATGTATTACTTGCTT 59.250 33.333 0.00 0.00 0.00 3.91
762 772 8.853345 GTTTTCACATCATGTATTACTTGCTTG 58.147 33.333 0.00 7.49 0.00 4.01
850 860 9.052759 AGGTATAGAAATTGTTGCCTTATAACG 57.947 33.333 0.00 0.00 0.00 3.18
974 984 3.254166 CCATTTTGAATCCCTGATAGGCG 59.746 47.826 0.00 0.00 32.73 5.52
1133 1143 7.152645 TCGAACAGAAGTTTACTTTGAGCTAT 58.847 34.615 0.00 0.00 38.30 2.97
1173 1183 4.651778 TCAGTTGAGAACCACCTAATTGG 58.348 43.478 0.00 0.00 43.04 3.16
1174 1184 3.191371 CAGTTGAGAACCACCTAATTGGC 59.809 47.826 0.00 0.00 40.77 4.52
1337 1347 4.142816 CGCTCTCAAGGAACTAATGGTTTG 60.143 45.833 0.00 0.00 38.49 2.93
1345 1355 7.340743 TCAAGGAACTAATGGTTTGTTCTTTCA 59.659 33.333 13.67 0.98 38.49 2.69
1569 1579 8.732746 TTTTTATGTATGCTTTCTACTCCCTC 57.267 34.615 0.00 0.00 0.00 4.30
1570 1580 4.965200 ATGTATGCTTTCTACTCCCTCC 57.035 45.455 0.00 0.00 0.00 4.30
1571 1581 2.693591 TGTATGCTTTCTACTCCCTCCG 59.306 50.000 0.00 0.00 0.00 4.63
1572 1582 1.867363 ATGCTTTCTACTCCCTCCGT 58.133 50.000 0.00 0.00 0.00 4.69
1573 1583 2.519771 TGCTTTCTACTCCCTCCGTA 57.480 50.000 0.00 0.00 0.00 4.02
1574 1584 2.811410 TGCTTTCTACTCCCTCCGTAA 58.189 47.619 0.00 0.00 0.00 3.18
1575 1585 3.167485 TGCTTTCTACTCCCTCCGTAAA 58.833 45.455 0.00 0.00 0.00 2.01
1576 1586 3.056322 TGCTTTCTACTCCCTCCGTAAAC 60.056 47.826 0.00 0.00 0.00 2.01
1577 1587 3.195182 GCTTTCTACTCCCTCCGTAAACT 59.805 47.826 0.00 0.00 0.00 2.66
1578 1588 4.400567 GCTTTCTACTCCCTCCGTAAACTA 59.599 45.833 0.00 0.00 0.00 2.24
1579 1589 5.105595 GCTTTCTACTCCCTCCGTAAACTAA 60.106 44.000 0.00 0.00 0.00 2.24
1580 1590 6.406737 GCTTTCTACTCCCTCCGTAAACTAAT 60.407 42.308 0.00 0.00 0.00 1.73
1581 1591 7.201857 GCTTTCTACTCCCTCCGTAAACTAATA 60.202 40.741 0.00 0.00 0.00 0.98
1582 1592 8.773033 TTTCTACTCCCTCCGTAAACTAATAT 57.227 34.615 0.00 0.00 0.00 1.28
1583 1593 9.866655 TTTCTACTCCCTCCGTAAACTAATATA 57.133 33.333 0.00 0.00 0.00 0.86
1584 1594 9.866655 TTCTACTCCCTCCGTAAACTAATATAA 57.133 33.333 0.00 0.00 0.00 0.98
1585 1595 9.512588 TCTACTCCCTCCGTAAACTAATATAAG 57.487 37.037 0.00 0.00 0.00 1.73
1586 1596 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
1587 1597 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1588 1598 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1589 1599 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
1590 1600 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
1591 1601 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
1592 1602 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
1593 1603 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
1594 1604 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
1595 1605 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
1644 1654 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
1963 1979 3.565307 TGGGAATGGTGAAGATTATGGC 58.435 45.455 0.00 0.00 0.00 4.40
2017 2033 2.256117 AAGAACCTGGACCACTTTCG 57.744 50.000 0.00 0.00 0.00 3.46
2216 2232 2.370849 GGGCCTTTAGTCATTATCCGGA 59.629 50.000 6.61 6.61 0.00 5.14
2331 2347 2.062519 GTCTGAGAGGAGAAACGCAAC 58.937 52.381 0.00 0.00 0.00 4.17
2368 2384 3.633525 TGAGAGCTGACAACAAAATTGCT 59.366 39.130 0.00 0.00 0.00 3.91
2486 2502 5.076182 TGACTGCCAAGGACAAAATTGATA 58.924 37.500 0.00 0.00 0.00 2.15
2507 2523 2.216046 CAGCAACTGTTGAAGCTCTGA 58.784 47.619 23.81 0.00 34.61 3.27
2657 2673 4.881850 ACTTGGTCTCTGTGTTAACTTTGG 59.118 41.667 7.22 0.00 0.00 3.28
2659 2675 3.456644 TGGTCTCTGTGTTAACTTTGGGA 59.543 43.478 7.22 0.00 0.00 4.37
2849 2865 8.295288 CAGCAATCTGAACAAGTAAGAATCTTT 58.705 33.333 0.00 0.00 42.95 2.52
2873 2889 7.038154 TGCATCATTTAGTTATTTAGTGGCC 57.962 36.000 0.00 0.00 0.00 5.36
2919 2935 8.777865 TCAGACTTTCTTGGAATACATACAAG 57.222 34.615 0.00 0.00 42.14 3.16
2941 2957 3.788227 AATTAGGACAGGTGCTGTTCA 57.212 42.857 3.52 0.00 45.44 3.18
3090 3106 8.445588 TGGAAAGGAGGAAGTAAGAAATAAAGT 58.554 33.333 0.00 0.00 0.00 2.66
3091 3107 9.955102 GGAAAGGAGGAAGTAAGAAATAAAGTA 57.045 33.333 0.00 0.00 0.00 2.24
3095 3111 8.760735 AGGAGGAAGTAAGAAATAAAGTACTCC 58.239 37.037 0.00 0.00 38.74 3.85
3096 3112 7.986320 GGAGGAAGTAAGAAATAAAGTACTCCC 59.014 40.741 0.00 0.00 33.86 4.30
3097 3113 8.682297 AGGAAGTAAGAAATAAAGTACTCCCT 57.318 34.615 0.00 0.00 0.00 4.20
3098 3114 8.760735 AGGAAGTAAGAAATAAAGTACTCCCTC 58.239 37.037 0.00 0.00 0.00 4.30
3099 3115 7.705752 GGAAGTAAGAAATAAAGTACTCCCTCG 59.294 40.741 0.00 0.00 0.00 4.63
3100 3116 7.715266 AGTAAGAAATAAAGTACTCCCTCGT 57.285 36.000 0.00 0.00 0.00 4.18
3101 3117 7.770201 AGTAAGAAATAAAGTACTCCCTCGTC 58.230 38.462 0.00 0.00 0.00 4.20
3102 3118 5.595257 AGAAATAAAGTACTCCCTCGTCC 57.405 43.478 0.00 0.00 0.00 4.79
3103 3119 4.405036 AGAAATAAAGTACTCCCTCGTCCC 59.595 45.833 0.00 0.00 0.00 4.46
3104 3120 2.905415 TAAAGTACTCCCTCGTCCCA 57.095 50.000 0.00 0.00 0.00 4.37
3105 3121 2.249309 AAAGTACTCCCTCGTCCCAT 57.751 50.000 0.00 0.00 0.00 4.00
3106 3122 3.393426 AAAGTACTCCCTCGTCCCATA 57.607 47.619 0.00 0.00 0.00 2.74
3107 3123 3.393426 AAGTACTCCCTCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
3108 3124 3.614568 AGTACTCCCTCGTCCCATAAT 57.385 47.619 0.00 0.00 0.00 1.28
3109 3125 3.231818 AGTACTCCCTCGTCCCATAATG 58.768 50.000 0.00 0.00 0.00 1.90
3110 3126 2.176247 ACTCCCTCGTCCCATAATGT 57.824 50.000 0.00 0.00 0.00 2.71
3111 3127 3.323774 ACTCCCTCGTCCCATAATGTA 57.676 47.619 0.00 0.00 0.00 2.29
3112 3128 3.649843 ACTCCCTCGTCCCATAATGTAA 58.350 45.455 0.00 0.00 0.00 2.41
3113 3129 3.641906 ACTCCCTCGTCCCATAATGTAAG 59.358 47.826 0.00 0.00 0.00 2.34
3114 3130 3.895656 CTCCCTCGTCCCATAATGTAAGA 59.104 47.826 0.00 0.00 0.00 2.10
3115 3131 3.640029 TCCCTCGTCCCATAATGTAAGAC 59.360 47.826 0.00 0.00 0.00 3.01
3116 3132 3.386726 CCCTCGTCCCATAATGTAAGACA 59.613 47.826 0.00 0.00 0.00 3.41
3117 3133 4.040461 CCCTCGTCCCATAATGTAAGACAT 59.960 45.833 0.00 0.00 41.31 3.06
3119 3135 6.055588 CCTCGTCCCATAATGTAAGACATTT 58.944 40.000 9.92 0.00 45.80 2.32
3120 3136 6.542370 CCTCGTCCCATAATGTAAGACATTTT 59.458 38.462 9.92 0.33 45.80 1.82
3121 3137 7.067008 CCTCGTCCCATAATGTAAGACATTTTT 59.933 37.037 9.92 0.00 45.80 1.94
3148 3164 4.690122 ACTAGTGTAGTGTCAAAAAGCGT 58.310 39.130 0.00 0.00 37.69 5.07
3149 3165 4.743644 ACTAGTGTAGTGTCAAAAAGCGTC 59.256 41.667 0.00 0.00 37.69 5.19
3150 3166 3.793559 AGTGTAGTGTCAAAAAGCGTCT 58.206 40.909 0.00 0.00 0.00 4.18
3151 3167 4.189231 AGTGTAGTGTCAAAAAGCGTCTT 58.811 39.130 0.00 0.00 0.00 3.01
3152 3168 5.353938 AGTGTAGTGTCAAAAAGCGTCTTA 58.646 37.500 0.00 0.00 0.00 2.10
3153 3169 5.233689 AGTGTAGTGTCAAAAAGCGTCTTAC 59.766 40.000 0.00 0.00 0.00 2.34
3154 3170 5.005971 GTGTAGTGTCAAAAAGCGTCTTACA 59.994 40.000 0.00 0.00 0.00 2.41
3155 3171 5.756347 TGTAGTGTCAAAAAGCGTCTTACAT 59.244 36.000 0.00 0.00 0.00 2.29
3156 3172 5.751243 AGTGTCAAAAAGCGTCTTACATT 57.249 34.783 0.00 0.00 0.00 2.71
3157 3173 6.854496 AGTGTCAAAAAGCGTCTTACATTA 57.146 33.333 0.00 0.00 0.00 1.90
3158 3174 7.435068 AGTGTCAAAAAGCGTCTTACATTAT 57.565 32.000 0.00 0.00 0.00 1.28
3159 3175 7.298122 AGTGTCAAAAAGCGTCTTACATTATG 58.702 34.615 0.00 0.00 0.00 1.90
3160 3176 6.523201 GTGTCAAAAAGCGTCTTACATTATGG 59.477 38.462 0.00 0.00 0.00 2.74
3161 3177 6.027749 GTCAAAAAGCGTCTTACATTATGGG 58.972 40.000 0.00 0.00 0.00 4.00
3162 3178 5.941058 TCAAAAAGCGTCTTACATTATGGGA 59.059 36.000 0.00 0.00 0.00 4.37
3163 3179 5.813080 AAAAGCGTCTTACATTATGGGAC 57.187 39.130 0.00 1.75 0.00 4.46
3165 3181 2.132762 GCGTCTTACATTATGGGACGG 58.867 52.381 25.20 14.78 46.26 4.79
3166 3182 2.223876 GCGTCTTACATTATGGGACGGA 60.224 50.000 25.20 5.94 46.26 4.69
3167 3183 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
3168 3184 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
3169 3185 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
3170 3186 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3171 3187 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
3194 3210 5.839063 AGTAGCTACTTATTCCTGCATACCA 59.161 40.000 20.95 0.00 31.13 3.25
3197 3213 6.000219 AGCTACTTATTCCTGCATACCATTG 59.000 40.000 0.00 0.00 0.00 2.82
3211 3227 7.089538 TGCATACCATTGTGTTGTCAAAATAG 58.910 34.615 0.00 0.00 31.06 1.73
3248 3264 3.294038 AAGAGAAGATTGCCTCCCATG 57.706 47.619 0.00 0.00 0.00 3.66
3251 3267 2.172293 GAGAAGATTGCCTCCCATGTCT 59.828 50.000 0.00 0.00 0.00 3.41
3402 3418 0.596082 GTTTCATCACAACCCCGGTG 59.404 55.000 0.00 0.00 37.60 4.94
3451 3467 5.671825 GCCATTTTCGCCTTCATTGAAATTG 60.672 40.000 0.01 0.00 34.88 2.32
3454 3470 2.945278 TCGCCTTCATTGAAATTGCAC 58.055 42.857 12.76 0.00 0.00 4.57
3460 3476 4.152759 CCTTCATTGAAATTGCACGCAAAT 59.847 37.500 8.76 0.00 39.55 2.32
3464 3480 3.367992 TGAAATTGCACGCAAATCAGT 57.632 38.095 8.76 0.00 39.55 3.41
3508 3526 7.925483 TGATAAAGCTGCAGTGTTACAATTTTT 59.075 29.630 16.64 3.99 0.00 1.94
3558 3576 3.493877 CAGCGGCAGAATGAGAAGAATAG 59.506 47.826 1.45 0.00 39.69 1.73
3566 3584 6.146510 GCAGAATGAGAAGAATAGCAGATGAG 59.853 42.308 0.00 0.00 39.69 2.90
3567 3585 6.146510 CAGAATGAGAAGAATAGCAGATGAGC 59.853 42.308 0.00 0.00 39.69 4.26
3568 3586 5.548181 ATGAGAAGAATAGCAGATGAGCA 57.452 39.130 0.00 0.00 36.85 4.26
3569 3587 4.946445 TGAGAAGAATAGCAGATGAGCAG 58.054 43.478 0.00 0.00 36.85 4.24
3570 3588 4.202233 TGAGAAGAATAGCAGATGAGCAGG 60.202 45.833 0.00 0.00 36.85 4.85
3571 3589 2.547299 AGAATAGCAGATGAGCAGGC 57.453 50.000 0.00 0.00 36.85 4.85
3572 3590 1.767088 AGAATAGCAGATGAGCAGGCA 59.233 47.619 0.00 0.00 36.85 4.75
3573 3591 2.372504 AGAATAGCAGATGAGCAGGCAT 59.627 45.455 0.00 0.00 36.85 4.40
3574 3592 2.953284 ATAGCAGATGAGCAGGCATT 57.047 45.000 0.00 0.00 36.85 3.56
3588 3606 1.406539 AGGCATTAGGCGCTTTTGATG 59.593 47.619 7.64 6.61 46.16 3.07
3600 3618 2.297033 GCTTTTGATGAGCAGGGTTCAA 59.703 45.455 0.00 0.00 39.89 2.69
3633 3651 2.358737 CTGACGCCCCTCCAACAC 60.359 66.667 0.00 0.00 0.00 3.32
3639 3657 0.899720 CGCCCCTCCAACACTACTAA 59.100 55.000 0.00 0.00 0.00 2.24
3645 3663 3.134804 CCCTCCAACACTACTAATCCCTG 59.865 52.174 0.00 0.00 0.00 4.45
3679 3697 6.520061 GCTGGGTAGGTTATGTTATGCTGATA 60.520 42.308 0.00 0.00 0.00 2.15
3680 3698 7.004555 TGGGTAGGTTATGTTATGCTGATAG 57.995 40.000 0.00 0.00 0.00 2.08
3748 3766 1.352352 AGGCAGAGTGCTAACATTGGT 59.648 47.619 0.00 0.00 44.28 3.67
3764 3783 2.080654 TGGTTGCCTTGTTTTAGCCT 57.919 45.000 0.00 0.00 0.00 4.58
3786 3805 5.536161 CCTATTGGGACCATTTGTTCCTATG 59.464 44.000 0.00 0.00 43.96 2.23
3854 3873 1.148157 CCGAATGGTGCTCAGCGTAG 61.148 60.000 0.00 0.00 0.00 3.51
3921 3940 1.956629 TTCCGCTTGATCCTCGTCCC 61.957 60.000 0.00 0.00 0.00 4.46
3952 3971 5.889289 AGGTCAGTGATACTCCTCTAGTTTC 59.111 44.000 0.00 0.00 39.80 2.78
4072 4091 6.757897 TTATCTTCAGCCCTTGTATGTTTG 57.242 37.500 0.00 0.00 0.00 2.93
4073 4092 4.098914 TCTTCAGCCCTTGTATGTTTGT 57.901 40.909 0.00 0.00 0.00 2.83
4119 4138 9.155975 TCTTCATTTAGCAGAATTTGTACTCTC 57.844 33.333 0.00 0.00 0.00 3.20
4132 4151 6.659745 TTTGTACTCTCTACTAGTTTGGCA 57.340 37.500 0.00 0.00 0.00 4.92
4155 4174 5.013568 TCATGCATTTTTATTGAGGCTGG 57.986 39.130 0.00 0.00 0.00 4.85
4159 4178 3.181472 GCATTTTTATTGAGGCTGGGGAG 60.181 47.826 0.00 0.00 0.00 4.30
4161 4180 3.825908 TTTTATTGAGGCTGGGGAGTT 57.174 42.857 0.00 0.00 0.00 3.01
4162 4181 2.806945 TTATTGAGGCTGGGGAGTTG 57.193 50.000 0.00 0.00 0.00 3.16
4466 4485 3.118408 CGACAGACAGGGAATGGGATTTA 60.118 47.826 0.00 0.00 0.00 1.40
4572 4594 1.442520 CCGTGCTTGTTGGAATGCG 60.443 57.895 0.00 0.00 0.00 4.73
4672 4694 6.868622 TGTTTGTTTGTACTTTGTAGGCATT 58.131 32.000 0.00 0.00 0.00 3.56
4709 4731 2.624838 CTGCCTCTTTGTTGATGTGGTT 59.375 45.455 0.00 0.00 0.00 3.67
4710 4732 3.820467 CTGCCTCTTTGTTGATGTGGTTA 59.180 43.478 0.00 0.00 0.00 2.85
4714 4736 6.183360 TGCCTCTTTGTTGATGTGGTTATTTT 60.183 34.615 0.00 0.00 0.00 1.82
4724 4746 3.992643 TGTGGTTATTTTCTCCGACGAA 58.007 40.909 0.00 0.00 0.00 3.85
4729 4751 4.453478 GGTTATTTTCTCCGACGAAAAGGT 59.547 41.667 14.19 4.99 43.65 3.50
4730 4752 5.379827 GTTATTTTCTCCGACGAAAAGGTG 58.620 41.667 14.19 0.00 43.65 4.00
4731 4753 2.894763 TTTCTCCGACGAAAAGGTGA 57.105 45.000 0.00 0.00 30.49 4.02
4736 4758 3.697542 TCTCCGACGAAAAGGTGATGATA 59.302 43.478 0.00 0.00 0.00 2.15
4753 4775 5.069119 TGATGATACCTAAACAGCGTCTCAT 59.931 40.000 0.00 0.00 0.00 2.90
4754 4776 6.264518 TGATGATACCTAAACAGCGTCTCATA 59.735 38.462 0.00 0.00 0.00 2.15
4764 4786 6.604735 AACAGCGTCTCATATTTACATTCC 57.395 37.500 0.00 0.00 0.00 3.01
4765 4787 4.745125 ACAGCGTCTCATATTTACATTCCG 59.255 41.667 0.00 0.00 0.00 4.30
4806 4828 2.611974 CCGTGTGGTCAAGTATTTGC 57.388 50.000 0.00 0.00 34.21 3.68
4808 4830 2.151202 CGTGTGGTCAAGTATTTGCCT 58.849 47.619 10.95 0.00 33.98 4.75
4810 4832 3.004315 CGTGTGGTCAAGTATTTGCCTTT 59.996 43.478 10.95 0.00 33.98 3.11
4811 4833 4.298332 GTGTGGTCAAGTATTTGCCTTTG 58.702 43.478 10.95 0.00 33.98 2.77
4830 4853 1.228675 CAAACAGCCAGGCTCCCTT 60.229 57.895 12.53 1.76 36.40 3.95
4863 4886 3.719924 CATCTTTGCAGGCAAAAAGACA 58.280 40.909 18.82 3.45 43.26 3.41
4864 4887 3.163630 TCTTTGCAGGCAAAAAGACAC 57.836 42.857 18.82 0.00 44.07 3.67
4865 4888 2.760092 TCTTTGCAGGCAAAAAGACACT 59.240 40.909 18.82 0.00 44.07 3.55
4866 4889 3.195396 TCTTTGCAGGCAAAAAGACACTT 59.805 39.130 18.82 0.00 44.07 3.16
4867 4890 2.869233 TGCAGGCAAAAAGACACTTC 57.131 45.000 0.00 0.00 0.00 3.01
4868 4891 2.378038 TGCAGGCAAAAAGACACTTCT 58.622 42.857 0.00 0.00 0.00 2.85
4869 4892 2.760092 TGCAGGCAAAAAGACACTTCTT 59.240 40.909 0.00 0.00 44.53 2.52
4870 4893 3.181487 TGCAGGCAAAAAGACACTTCTTC 60.181 43.478 0.00 0.00 41.56 2.87
4871 4894 3.067320 GCAGGCAAAAAGACACTTCTTCT 59.933 43.478 0.00 0.00 41.56 2.85
4872 4895 4.440663 GCAGGCAAAAAGACACTTCTTCTT 60.441 41.667 0.00 0.00 41.56 2.52
4873 4896 5.277047 CAGGCAAAAAGACACTTCTTCTTC 58.723 41.667 0.00 0.00 41.56 2.87
4874 4897 4.035675 AGGCAAAAAGACACTTCTTCTTCG 59.964 41.667 0.00 0.00 41.56 3.79
4875 4898 4.282873 GCAAAAAGACACTTCTTCTTCGG 58.717 43.478 0.00 0.00 41.56 4.30
4876 4899 4.201920 GCAAAAAGACACTTCTTCTTCGGT 60.202 41.667 0.00 0.00 41.56 4.69
4877 4900 5.007332 GCAAAAAGACACTTCTTCTTCGGTA 59.993 40.000 0.00 0.00 41.56 4.02
4878 4901 6.419771 CAAAAAGACACTTCTTCTTCGGTAC 58.580 40.000 0.00 0.00 41.56 3.34
4879 4902 4.931661 AAGACACTTCTTCTTCGGTACA 57.068 40.909 0.00 0.00 37.55 2.90
4880 4903 4.931661 AGACACTTCTTCTTCGGTACAA 57.068 40.909 0.00 0.00 0.00 2.41
4881 4904 4.618965 AGACACTTCTTCTTCGGTACAAC 58.381 43.478 0.00 0.00 0.00 3.32
4882 4905 3.725490 ACACTTCTTCTTCGGTACAACC 58.275 45.455 0.00 0.00 34.05 3.77
4883 4906 3.064931 CACTTCTTCTTCGGTACAACCC 58.935 50.000 0.00 0.00 33.75 4.11
4884 4907 2.038164 ACTTCTTCTTCGGTACAACCCC 59.962 50.000 0.00 0.00 33.75 4.95
4885 4908 0.978907 TCTTCTTCGGTACAACCCCC 59.021 55.000 0.00 0.00 33.75 5.40
4886 4909 0.981943 CTTCTTCGGTACAACCCCCT 59.018 55.000 0.00 0.00 33.75 4.79
4887 4910 1.350019 CTTCTTCGGTACAACCCCCTT 59.650 52.381 0.00 0.00 33.75 3.95
4888 4911 2.323999 TCTTCGGTACAACCCCCTTA 57.676 50.000 0.00 0.00 33.75 2.69
4889 4912 2.618794 TCTTCGGTACAACCCCCTTAA 58.381 47.619 0.00 0.00 33.75 1.85
4890 4913 2.978278 TCTTCGGTACAACCCCCTTAAA 59.022 45.455 0.00 0.00 33.75 1.52
4891 4914 2.857186 TCGGTACAACCCCCTTAAAC 57.143 50.000 0.00 0.00 33.75 2.01
4892 4915 2.053244 TCGGTACAACCCCCTTAAACA 58.947 47.619 0.00 0.00 33.75 2.83
4893 4916 2.153645 CGGTACAACCCCCTTAAACAC 58.846 52.381 0.00 0.00 33.75 3.32
4894 4917 2.486907 CGGTACAACCCCCTTAAACACA 60.487 50.000 0.00 0.00 33.75 3.72
4895 4918 3.564264 GGTACAACCCCCTTAAACACAA 58.436 45.455 0.00 0.00 30.04 3.33
4896 4919 3.318839 GGTACAACCCCCTTAAACACAAC 59.681 47.826 0.00 0.00 30.04 3.32
4897 4920 3.103080 ACAACCCCCTTAAACACAACA 57.897 42.857 0.00 0.00 0.00 3.33
4898 4921 3.442076 ACAACCCCCTTAAACACAACAA 58.558 40.909 0.00 0.00 0.00 2.83
4899 4922 3.196039 ACAACCCCCTTAAACACAACAAC 59.804 43.478 0.00 0.00 0.00 3.32
4900 4923 2.025898 ACCCCCTTAAACACAACAACG 58.974 47.619 0.00 0.00 0.00 4.10
4901 4924 2.299521 CCCCCTTAAACACAACAACGA 58.700 47.619 0.00 0.00 0.00 3.85
4902 4925 2.033675 CCCCCTTAAACACAACAACGAC 59.966 50.000 0.00 0.00 0.00 4.34
4903 4926 2.946990 CCCCTTAAACACAACAACGACT 59.053 45.455 0.00 0.00 0.00 4.18
4904 4927 3.242936 CCCCTTAAACACAACAACGACTG 60.243 47.826 0.00 0.00 0.00 3.51
4905 4928 3.623960 CCCTTAAACACAACAACGACTGA 59.376 43.478 0.00 0.00 0.00 3.41
4906 4929 4.260620 CCCTTAAACACAACAACGACTGAG 60.261 45.833 0.00 0.00 0.00 3.35
4907 4930 4.569162 CCTTAAACACAACAACGACTGAGA 59.431 41.667 0.00 0.00 0.00 3.27
4908 4931 5.236478 CCTTAAACACAACAACGACTGAGAT 59.764 40.000 0.00 0.00 0.00 2.75
4909 4932 4.795970 AAACACAACAACGACTGAGATC 57.204 40.909 0.00 0.00 0.00 2.75
4911 4934 1.125021 CACAACAACGACTGAGATCGC 59.875 52.381 0.00 0.00 46.22 4.58
4912 4935 1.269569 ACAACAACGACTGAGATCGCA 60.270 47.619 0.00 0.00 46.22 5.10
4913 4936 1.125021 CAACAACGACTGAGATCGCAC 59.875 52.381 0.00 0.00 46.22 5.34
4914 4937 0.388649 ACAACGACTGAGATCGCACC 60.389 55.000 0.00 0.00 46.22 5.01
4915 4938 1.078759 CAACGACTGAGATCGCACCC 61.079 60.000 0.00 0.00 46.22 4.61
4916 4939 1.251527 AACGACTGAGATCGCACCCT 61.252 55.000 0.00 0.00 46.22 4.34
4917 4940 0.393944 ACGACTGAGATCGCACCCTA 60.394 55.000 0.00 0.00 46.22 3.53
4918 4941 0.029567 CGACTGAGATCGCACCCTAC 59.970 60.000 0.00 0.00 34.90 3.18
4919 4942 0.386113 GACTGAGATCGCACCCTACC 59.614 60.000 0.00 0.00 0.00 3.18
4920 4943 1.043673 ACTGAGATCGCACCCTACCC 61.044 60.000 0.00 0.00 0.00 3.69
4921 4944 1.749334 CTGAGATCGCACCCTACCCC 61.749 65.000 0.00 0.00 0.00 4.95
4922 4945 1.457831 GAGATCGCACCCTACCCCT 60.458 63.158 0.00 0.00 0.00 4.79
4923 4946 1.003051 AGATCGCACCCTACCCCTT 59.997 57.895 0.00 0.00 0.00 3.95
4924 4947 1.049289 AGATCGCACCCTACCCCTTC 61.049 60.000 0.00 0.00 0.00 3.46
4925 4948 1.306654 ATCGCACCCTACCCCTTCA 60.307 57.895 0.00 0.00 0.00 3.02
4926 4949 0.694444 ATCGCACCCTACCCCTTCAT 60.694 55.000 0.00 0.00 0.00 2.57
4927 4950 0.912487 TCGCACCCTACCCCTTCATT 60.912 55.000 0.00 0.00 0.00 2.57
4928 4951 0.834612 CGCACCCTACCCCTTCATTA 59.165 55.000 0.00 0.00 0.00 1.90
4929 4952 1.210967 CGCACCCTACCCCTTCATTAA 59.789 52.381 0.00 0.00 0.00 1.40
4930 4953 2.356330 CGCACCCTACCCCTTCATTAAA 60.356 50.000 0.00 0.00 0.00 1.52
4931 4954 3.703921 GCACCCTACCCCTTCATTAAAA 58.296 45.455 0.00 0.00 0.00 1.52
4932 4955 4.090819 GCACCCTACCCCTTCATTAAAAA 58.909 43.478 0.00 0.00 0.00 1.94
4933 4956 4.159693 GCACCCTACCCCTTCATTAAAAAG 59.840 45.833 0.00 0.00 0.00 2.27
4934 4957 4.709886 CACCCTACCCCTTCATTAAAAAGG 59.290 45.833 11.36 11.36 42.52 3.11
4943 4966 6.619801 CCTTCATTAAAAAGGGTAGGATCG 57.380 41.667 10.72 0.00 39.75 3.69
4944 4967 6.120220 CCTTCATTAAAAAGGGTAGGATCGT 58.880 40.000 10.72 0.00 39.75 3.73
4945 4968 6.260271 CCTTCATTAAAAAGGGTAGGATCGTC 59.740 42.308 10.72 0.00 39.75 4.20
4946 4969 5.677567 TCATTAAAAAGGGTAGGATCGTCC 58.322 41.667 0.00 0.00 36.58 4.79
4947 4970 4.492494 TTAAAAAGGGTAGGATCGTCCC 57.508 45.455 12.42 12.42 37.19 4.46
4948 4971 1.961133 AAAAGGGTAGGATCGTCCCA 58.039 50.000 18.91 0.00 43.31 4.37
4949 4972 1.497161 AAAGGGTAGGATCGTCCCAG 58.503 55.000 18.91 0.00 43.31 4.45
4950 4973 1.049289 AAGGGTAGGATCGTCCCAGC 61.049 60.000 18.91 2.55 43.31 4.85
4951 4974 1.760875 GGGTAGGATCGTCCCAGCA 60.761 63.158 14.41 0.00 40.79 4.41
4952 4975 1.442148 GGTAGGATCGTCCCAGCAC 59.558 63.158 0.00 0.00 37.19 4.40
4953 4976 1.327690 GGTAGGATCGTCCCAGCACA 61.328 60.000 0.00 0.00 37.19 4.57
4954 4977 0.753262 GTAGGATCGTCCCAGCACAT 59.247 55.000 0.00 0.00 37.19 3.21
4955 4978 1.961394 GTAGGATCGTCCCAGCACATA 59.039 52.381 0.00 0.00 37.19 2.29
4956 4979 1.496060 AGGATCGTCCCAGCACATAA 58.504 50.000 1.06 0.00 37.19 1.90
4957 4980 1.837439 AGGATCGTCCCAGCACATAAA 59.163 47.619 1.06 0.00 37.19 1.40
4958 4981 2.238646 AGGATCGTCCCAGCACATAAAA 59.761 45.455 1.06 0.00 37.19 1.52
4959 4982 3.013921 GGATCGTCCCAGCACATAAAAA 58.986 45.455 0.00 0.00 0.00 1.94
4960 4983 3.065371 GGATCGTCCCAGCACATAAAAAG 59.935 47.826 0.00 0.00 0.00 2.27
4961 4984 1.810151 TCGTCCCAGCACATAAAAAGC 59.190 47.619 0.00 0.00 0.00 3.51
4962 4985 1.135402 CGTCCCAGCACATAAAAAGCC 60.135 52.381 0.00 0.00 0.00 4.35
4963 4986 1.135402 GTCCCAGCACATAAAAAGCCG 60.135 52.381 0.00 0.00 0.00 5.52
4964 4987 0.458370 CCCAGCACATAAAAAGCCGC 60.458 55.000 0.00 0.00 0.00 6.53
4965 4988 0.458370 CCAGCACATAAAAAGCCGCC 60.458 55.000 0.00 0.00 0.00 6.13
4966 4989 0.798009 CAGCACATAAAAAGCCGCCG 60.798 55.000 0.00 0.00 0.00 6.46
4967 4990 2.158330 GCACATAAAAAGCCGCCGC 61.158 57.895 0.00 0.00 0.00 6.53
4968 4991 1.516169 CACATAAAAAGCCGCCGCC 60.516 57.895 0.00 0.00 34.57 6.13
4969 4992 2.104132 CATAAAAAGCCGCCGCCC 59.896 61.111 0.00 0.00 34.57 6.13
4970 4993 3.514362 ATAAAAAGCCGCCGCCCG 61.514 61.111 0.00 0.00 34.57 6.13
5019 5042 3.107661 GGTTGTACCCGCGTGACG 61.108 66.667 4.92 0.00 43.15 4.35
5039 5062 3.194719 GCTGTACGCCGACTACCT 58.805 61.111 0.00 0.00 0.00 3.08
5040 5063 1.226603 GCTGTACGCCGACTACCTG 60.227 63.158 0.00 0.00 0.00 4.00
5041 5064 1.930908 GCTGTACGCCGACTACCTGT 61.931 60.000 0.00 0.00 0.00 4.00
5042 5065 1.372582 CTGTACGCCGACTACCTGTA 58.627 55.000 0.00 0.00 0.00 2.74
5043 5066 1.063174 CTGTACGCCGACTACCTGTAC 59.937 57.143 0.00 0.00 36.74 2.90
5044 5067 1.086696 GTACGCCGACTACCTGTACA 58.913 55.000 0.00 0.00 36.35 2.90
5045 5068 1.672881 GTACGCCGACTACCTGTACAT 59.327 52.381 0.00 0.00 36.35 2.29
5046 5069 0.454600 ACGCCGACTACCTGTACATG 59.545 55.000 0.00 0.00 0.00 3.21
5047 5070 0.870307 CGCCGACTACCTGTACATGC 60.870 60.000 0.00 0.00 0.00 4.06
5048 5071 0.870307 GCCGACTACCTGTACATGCG 60.870 60.000 0.00 0.00 0.00 4.73
5049 5072 0.454600 CCGACTACCTGTACATGCGT 59.545 55.000 0.00 0.00 0.00 5.24
5050 5073 1.533338 CCGACTACCTGTACATGCGTC 60.533 57.143 0.00 3.79 0.00 5.19
5051 5074 1.533338 CGACTACCTGTACATGCGTCC 60.533 57.143 0.00 0.00 0.00 4.79
5052 5075 0.454600 ACTACCTGTACATGCGTCCG 59.545 55.000 0.00 0.00 0.00 4.79
5053 5076 0.454600 CTACCTGTACATGCGTCCGT 59.545 55.000 0.00 0.00 0.00 4.69
5054 5077 0.452987 TACCTGTACATGCGTCCGTC 59.547 55.000 0.00 0.00 0.00 4.79
5055 5078 1.518572 CCTGTACATGCGTCCGTCC 60.519 63.158 0.00 0.00 0.00 4.79
5056 5079 1.214325 CTGTACATGCGTCCGTCCA 59.786 57.895 0.00 0.00 0.00 4.02
5057 5080 1.076533 CTGTACATGCGTCCGTCCAC 61.077 60.000 0.00 0.00 0.00 4.02
5058 5081 2.156446 GTACATGCGTCCGTCCACG 61.156 63.158 0.00 0.00 42.95 4.94
5059 5082 2.628696 TACATGCGTCCGTCCACGT 61.629 57.895 0.00 0.00 42.04 4.49
5060 5083 1.304509 TACATGCGTCCGTCCACGTA 61.305 55.000 0.00 0.00 42.04 3.57
5061 5084 2.156446 CATGCGTCCGTCCACGTAC 61.156 63.158 0.00 0.00 42.04 3.67
5064 5087 3.164576 CGTCCGTCCACGTACGTA 58.835 61.111 22.34 3.16 44.60 3.57
5065 5088 1.225745 CGTCCGTCCACGTACGTAC 60.226 63.158 22.34 15.69 44.60 3.67
5075 5098 4.963756 GTACGTACGAGGACGAGC 57.036 61.111 24.41 3.01 45.82 5.03
5076 5099 2.081526 GTACGTACGAGGACGAGCA 58.918 57.895 24.41 0.00 45.82 4.26
5077 5100 0.443869 GTACGTACGAGGACGAGCAA 59.556 55.000 24.41 0.00 45.82 3.91
5078 5101 1.135972 GTACGTACGAGGACGAGCAAA 60.136 52.381 24.41 0.00 45.82 3.68
5079 5102 0.109873 ACGTACGAGGACGAGCAAAG 60.110 55.000 24.41 0.00 45.82 2.77
5080 5103 0.167470 CGTACGAGGACGAGCAAAGA 59.833 55.000 10.44 0.00 45.82 2.52
5081 5104 1.400629 CGTACGAGGACGAGCAAAGAA 60.401 52.381 10.44 0.00 45.82 2.52
5082 5105 2.669364 GTACGAGGACGAGCAAAGAAA 58.331 47.619 0.00 0.00 42.66 2.52
5083 5106 2.234300 ACGAGGACGAGCAAAGAAAA 57.766 45.000 0.00 0.00 42.66 2.29
5084 5107 2.557317 ACGAGGACGAGCAAAGAAAAA 58.443 42.857 0.00 0.00 42.66 1.94
5100 5123 4.113681 AAAAACGACGCGACCTGT 57.886 50.000 15.93 1.71 0.00 4.00
5101 5124 1.929376 AAAAACGACGCGACCTGTC 59.071 52.632 15.93 0.00 0.00 3.51
5112 5135 3.237522 GACCTGTCGAGCGATGTAC 57.762 57.895 0.00 0.00 0.00 2.90
5113 5136 0.733729 GACCTGTCGAGCGATGTACT 59.266 55.000 0.00 0.00 0.00 2.73
5114 5137 0.733729 ACCTGTCGAGCGATGTACTC 59.266 55.000 0.00 0.00 0.00 2.59
5122 5145 3.978373 CGATGTACTCGTGGCGAC 58.022 61.111 0.00 0.00 42.56 5.19
5124 5147 1.136147 GATGTACTCGTGGCGACGT 59.864 57.895 20.82 5.37 46.20 4.34
5125 5148 1.132199 GATGTACTCGTGGCGACGTG 61.132 60.000 20.82 20.12 46.20 4.49
5126 5149 2.503375 GTACTCGTGGCGACGTGG 60.503 66.667 23.66 18.01 46.20 4.94
5127 5150 2.669229 TACTCGTGGCGACGTGGA 60.669 61.111 23.66 15.28 46.20 4.02
5128 5151 2.683859 TACTCGTGGCGACGTGGAG 61.684 63.158 23.66 15.57 46.20 3.86
5129 5152 3.733960 CTCGTGGCGACGTGGAGA 61.734 66.667 20.82 0.06 46.20 3.71
5130 5153 3.263503 CTCGTGGCGACGTGGAGAA 62.264 63.158 20.82 0.00 46.20 2.87
5131 5154 2.355363 CGTGGCGACGTGGAGAAA 60.355 61.111 13.58 0.00 40.91 2.52
5132 5155 1.952133 CGTGGCGACGTGGAGAAAA 60.952 57.895 13.58 0.00 40.91 2.29
5133 5156 1.492319 CGTGGCGACGTGGAGAAAAA 61.492 55.000 13.58 0.00 40.91 1.94
5150 5173 4.113681 AAAAACGACGCGACCTGT 57.886 50.000 15.93 1.71 0.00 4.00
5151 5174 1.929376 AAAAACGACGCGACCTGTC 59.071 52.632 15.93 0.00 0.00 3.51
5175 5198 2.868331 CGTACTCGTGGCGACGTG 60.868 66.667 20.82 20.12 46.20 4.49
5176 5199 2.503375 GTACTCGTGGCGACGTGG 60.503 66.667 23.66 18.01 46.20 4.94
5177 5200 4.409218 TACTCGTGGCGACGTGGC 62.409 66.667 23.66 14.82 46.20 5.01
5214 5237 4.663145 AAAACAAAAATAACACGACGCG 57.337 36.364 3.53 3.53 0.00 6.01
5215 5238 3.589061 AACAAAAATAACACGACGCGA 57.411 38.095 15.93 0.00 0.00 5.87
5216 5239 2.895062 ACAAAAATAACACGACGCGAC 58.105 42.857 15.93 5.54 0.00 5.19
5217 5240 1.887480 CAAAAATAACACGACGCGACG 59.113 47.619 27.89 27.89 39.31 5.12
5225 5248 4.967730 CGACGCGACGTGTGTGGA 62.968 66.667 20.29 0.00 42.62 4.02
5226 5249 3.392440 GACGCGACGTGTGTGGAC 61.392 66.667 20.29 0.00 42.62 4.02
5234 5257 4.922026 GTGTGTGGACGGGGCGTT 62.922 66.667 0.00 0.00 41.37 4.84
5235 5258 4.920112 TGTGTGGACGGGGCGTTG 62.920 66.667 0.00 0.00 41.37 4.10
5236 5259 4.922026 GTGTGGACGGGGCGTTGT 62.922 66.667 0.00 0.00 41.37 3.32
5237 5260 4.920112 TGTGGACGGGGCGTTGTG 62.920 66.667 0.00 0.00 41.37 3.33
5238 5261 4.922026 GTGGACGGGGCGTTGTGT 62.922 66.667 0.00 0.00 41.37 3.72
5239 5262 4.920112 TGGACGGGGCGTTGTGTG 62.920 66.667 0.00 0.00 41.37 3.82
5249 5272 0.110192 GCGTTGTGTGCCTTCTAAGC 60.110 55.000 0.00 0.00 0.00 3.09
5250 5273 0.163788 CGTTGTGTGCCTTCTAAGCG 59.836 55.000 0.00 0.00 0.00 4.68
5251 5274 1.508632 GTTGTGTGCCTTCTAAGCGA 58.491 50.000 0.00 0.00 0.00 4.93
5252 5275 1.194772 GTTGTGTGCCTTCTAAGCGAC 59.805 52.381 0.00 0.00 0.00 5.19
5253 5276 0.666274 TGTGTGCCTTCTAAGCGACG 60.666 55.000 0.00 0.00 0.00 5.12
5254 5277 1.080093 TGTGCCTTCTAAGCGACGG 60.080 57.895 0.00 0.00 34.28 4.79
5255 5278 1.080025 GTGCCTTCTAAGCGACGGT 60.080 57.895 0.00 0.00 33.71 4.83
5256 5279 1.077089 GTGCCTTCTAAGCGACGGTC 61.077 60.000 0.00 0.00 33.71 4.79
5257 5280 1.214589 GCCTTCTAAGCGACGGTCA 59.785 57.895 9.10 0.00 33.71 4.02
5258 5281 0.389426 GCCTTCTAAGCGACGGTCAA 60.389 55.000 9.10 0.00 33.71 3.18
5259 5282 1.630148 CCTTCTAAGCGACGGTCAAG 58.370 55.000 9.10 1.34 0.00 3.02
5260 5283 1.630148 CTTCTAAGCGACGGTCAAGG 58.370 55.000 9.10 0.00 0.00 3.61
5261 5284 0.245539 TTCTAAGCGACGGTCAAGGG 59.754 55.000 9.10 0.00 0.00 3.95
5262 5285 1.810030 CTAAGCGACGGTCAAGGGC 60.810 63.158 9.10 3.34 0.00 5.19
5263 5286 3.636313 TAAGCGACGGTCAAGGGCG 62.636 63.158 9.10 0.00 0.00 6.13
5266 5289 4.675029 CGACGGTCAAGGGCGGTT 62.675 66.667 9.10 0.00 0.00 4.44
5267 5290 2.741211 GACGGTCAAGGGCGGTTC 60.741 66.667 2.62 0.00 0.00 3.62
5268 5291 4.324991 ACGGTCAAGGGCGGTTCC 62.325 66.667 0.00 0.00 0.00 3.62
5299 5322 2.904866 GGCCCGATGCGCCATTAA 60.905 61.111 4.18 0.00 46.27 1.40
5300 5323 2.268076 GGCCCGATGCGCCATTAAT 61.268 57.895 4.18 0.00 46.27 1.40
5301 5324 1.081242 GCCCGATGCGCCATTAATG 60.081 57.895 4.18 8.58 0.00 1.90
5302 5325 1.081242 CCCGATGCGCCATTAATGC 60.081 57.895 10.11 5.03 0.00 3.56
5303 5326 1.081242 CCGATGCGCCATTAATGCC 60.081 57.895 10.11 0.00 0.00 4.40
5304 5327 1.440850 CGATGCGCCATTAATGCCG 60.441 57.895 14.08 14.08 0.00 5.69
5305 5328 1.081242 GATGCGCCATTAATGCCGG 60.081 57.895 19.13 0.00 0.00 6.13
5306 5329 3.211564 ATGCGCCATTAATGCCGGC 62.212 57.895 22.73 22.73 42.64 6.13
5309 5332 2.804856 GCCATTAATGCCGGCGTT 59.195 55.556 34.59 34.59 35.79 4.84
5310 5333 2.026522 GCCATTAATGCCGGCGTTA 58.973 52.632 32.40 32.40 35.79 3.18
5311 5334 0.382515 GCCATTAATGCCGGCGTTAA 59.617 50.000 41.20 41.20 40.36 2.01
5312 5335 1.599419 GCCATTAATGCCGGCGTTAAG 60.599 52.381 41.10 33.12 39.71 1.85
5331 5354 4.487412 CGGGCGTCGGTCACCTAC 62.487 72.222 0.00 0.00 34.75 3.18
5332 5355 4.139234 GGGCGTCGGTCACCTACC 62.139 72.222 0.00 0.00 45.77 3.18
5339 5362 4.139234 GGTCACCTACCGGACGGC 62.139 72.222 9.46 0.00 38.88 5.68
5340 5363 4.139234 GTCACCTACCGGACGGCC 62.139 72.222 9.46 0.00 39.32 6.13
5341 5364 4.371417 TCACCTACCGGACGGCCT 62.371 66.667 9.46 0.00 39.32 5.19
5342 5365 3.834799 CACCTACCGGACGGCCTC 61.835 72.222 9.46 0.00 39.32 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.159490 GGTCTGACAGCTTAGTCTCGAC 60.159 54.545 10.38 13.70 39.27 4.20
135 137 7.964559 CCAAATCACACATGATAGTTACAAGTG 59.035 37.037 0.00 0.00 45.26 3.16
233 239 5.560953 CGAGAAAAGCTTAAACCCTCACAAG 60.561 44.000 0.00 0.00 0.00 3.16
239 245 3.816994 ACACGAGAAAAGCTTAAACCCT 58.183 40.909 0.00 0.00 0.00 4.34
281 287 6.815089 ACAAAATGTACAACACCATCACATT 58.185 32.000 0.00 0.00 40.56 2.71
300 306 2.288457 CGAGACTGAGGAGCTGACAAAA 60.288 50.000 0.00 0.00 0.00 2.44
350 360 3.837213 ACAAACTGTACAGCATCATGC 57.163 42.857 22.90 0.00 45.46 4.06
400 410 9.520515 AAATTCTTTTCTGAGGAACAGCTTATA 57.479 29.630 0.00 0.00 45.38 0.98
401 411 8.414629 AAATTCTTTTCTGAGGAACAGCTTAT 57.585 30.769 0.00 0.00 45.38 1.73
402 412 7.823745 AAATTCTTTTCTGAGGAACAGCTTA 57.176 32.000 0.00 0.00 45.38 3.09
430 440 2.158608 AGCCCACAAGTCAAGCTTTAGT 60.159 45.455 0.00 0.00 34.69 2.24
458 468 2.229792 TGATGGGAGCAGTTGTTCAAC 58.770 47.619 7.50 7.50 0.00 3.18
463 473 2.885135 TGATTGATGGGAGCAGTTGT 57.115 45.000 0.00 0.00 0.00 3.32
471 481 4.508551 AGCATACACTTGATTGATGGGA 57.491 40.909 0.00 0.00 0.00 4.37
491 501 8.796278 GTCAAACGCTTATGAACTAGTAACTAG 58.204 37.037 0.00 0.00 39.72 2.57
498 508 6.467723 ACTTGTCAAACGCTTATGAACTAG 57.532 37.500 0.00 0.00 0.00 2.57
499 509 6.293190 CCAACTTGTCAAACGCTTATGAACTA 60.293 38.462 0.00 0.00 0.00 2.24
500 510 5.505654 CCAACTTGTCAAACGCTTATGAACT 60.506 40.000 0.00 0.00 0.00 3.01
505 515 4.134563 ACTCCAACTTGTCAAACGCTTAT 58.865 39.130 0.00 0.00 0.00 1.73
573 583 2.158769 TCATGCTGACACCACAAGTCTT 60.159 45.455 0.00 0.00 36.94 3.01
599 609 7.826918 AGTGGTAAGCCTAGAAGTAATAGAG 57.173 40.000 0.00 0.00 35.27 2.43
603 613 7.355890 AGACTAGTGGTAAGCCTAGAAGTAAT 58.644 38.462 0.00 0.00 35.65 1.89
612 622 2.754002 GTTCGAGACTAGTGGTAAGCCT 59.246 50.000 0.00 0.00 35.27 4.58
615 625 5.821516 AGATGTTCGAGACTAGTGGTAAG 57.178 43.478 0.00 0.00 0.00 2.34
621 631 7.633193 AGAATTGTAGATGTTCGAGACTAGT 57.367 36.000 0.00 0.00 0.00 2.57
638 648 8.565896 TTCACATGCTTGATACTAAGAATTGT 57.434 30.769 6.60 0.00 0.00 2.71
722 732 2.468777 GTGAAAACGCATGAAGCTTGTG 59.531 45.455 2.10 3.62 42.61 3.33
761 771 4.721776 AGAGTTAGGCCCATCTGAAATACA 59.278 41.667 0.00 0.00 0.00 2.29
762 772 5.059833 CAGAGTTAGGCCCATCTGAAATAC 58.940 45.833 15.51 0.00 41.35 1.89
850 860 7.445945 ACATACTAAGCAGATCAAACCTATCC 58.554 38.462 0.00 0.00 0.00 2.59
926 936 6.248569 ACAGAAGTAACCCAAGAGAAAGAA 57.751 37.500 0.00 0.00 0.00 2.52
1337 1347 7.115378 CCTGCAATTACAGTCAAATGAAAGAAC 59.885 37.037 4.98 0.00 35.83 3.01
1345 1355 6.403866 TTCAACCTGCAATTACAGTCAAAT 57.596 33.333 4.98 0.00 35.83 2.32
1418 1428 5.552870 TTTCAGAAAGAGAGGTAGCAAGT 57.447 39.130 0.00 0.00 0.00 3.16
1419 1429 7.821846 ACTATTTTCAGAAAGAGAGGTAGCAAG 59.178 37.037 11.91 0.00 36.44 4.01
1565 1575 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
1566 1576 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
1567 1577 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
1568 1578 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
1569 1579 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
1618 1628 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
1634 1644 8.877195 TCAACTAAAAATAAGTACTCCCTCTGT 58.123 33.333 0.00 0.00 0.00 3.41
1635 1645 9.372369 CTCAACTAAAAATAAGTACTCCCTCTG 57.628 37.037 0.00 0.00 0.00 3.35
1636 1646 8.041919 GCTCAACTAAAAATAAGTACTCCCTCT 58.958 37.037 0.00 0.00 0.00 3.69
1637 1647 8.041919 AGCTCAACTAAAAATAAGTACTCCCTC 58.958 37.037 0.00 0.00 0.00 4.30
1638 1648 7.919151 AGCTCAACTAAAAATAAGTACTCCCT 58.081 34.615 0.00 0.00 0.00 4.20
1639 1649 8.563123 AAGCTCAACTAAAAATAAGTACTCCC 57.437 34.615 0.00 0.00 0.00 4.30
1737 1747 1.233285 AACTCTTCGCTGCAGCCTTG 61.233 55.000 32.07 20.83 37.91 3.61
1896 1912 3.764972 TGATTTGCTTGATCCATCAGCAA 59.235 39.130 16.14 16.14 42.92 3.91
1963 1979 7.308469 CCTCTTCCATTCTTTCTTCTCTTGTTG 60.308 40.741 0.00 0.00 0.00 3.33
2038 2054 4.761235 TCGTCGATACTTTGAACTGACT 57.239 40.909 0.00 0.00 0.00 3.41
2109 2125 4.962995 TGTTTCCAACAATACCCTTTTCCA 59.037 37.500 0.00 0.00 38.72 3.53
2216 2232 2.027100 GGCCCTTGACAGTAGTTAAGCT 60.027 50.000 0.00 0.00 39.34 3.74
2331 2347 2.158449 GCTCTCACATGACGAAAACCAG 59.842 50.000 0.00 0.00 0.00 4.00
2507 2523 6.549364 TCCACAATTTTCTTGACATAAGGTGT 59.451 34.615 0.00 0.00 45.83 4.16
2657 2673 7.911651 TGGAAATAGATATCATCTTGGACTCC 58.088 38.462 5.32 0.73 40.76 3.85
2781 2797 0.174162 GCATTTGGATCACTGCACCC 59.826 55.000 0.00 0.00 34.77 4.61
2849 2865 6.833416 AGGCCACTAAATAACTAAATGATGCA 59.167 34.615 5.01 0.00 0.00 3.96
2873 2889 9.632807 GTCTGAATAGATAGCTAAATGTACCAG 57.367 37.037 0.00 1.12 34.94 4.00
2919 2935 4.072131 TGAACAGCACCTGTCCTAATTTC 58.928 43.478 0.00 0.00 44.62 2.17
2941 2957 7.654287 ATTTTGGAATGGAGGGAGTATCTAT 57.346 36.000 0.00 0.00 33.73 1.98
3049 3065 8.611257 TCCTCCTTTCCAAGATATTTGAAGTTA 58.389 33.333 0.84 0.00 0.00 2.24
3069 3085 8.760735 GGAGTACTTTATTTCTTACTTCCTCCT 58.239 37.037 0.00 0.00 31.70 3.69
3090 3106 3.323774 ACATTATGGGACGAGGGAGTA 57.676 47.619 0.00 0.00 0.00 2.59
3091 3107 2.176247 ACATTATGGGACGAGGGAGT 57.824 50.000 0.00 0.00 0.00 3.85
3092 3108 3.895656 TCTTACATTATGGGACGAGGGAG 59.104 47.826 0.00 0.00 0.00 4.30
3093 3109 3.640029 GTCTTACATTATGGGACGAGGGA 59.360 47.826 0.00 0.00 0.00 4.20
3094 3110 3.386726 TGTCTTACATTATGGGACGAGGG 59.613 47.826 0.00 0.00 0.00 4.30
3095 3111 4.665833 TGTCTTACATTATGGGACGAGG 57.334 45.455 0.00 0.00 0.00 4.63
3126 3142 4.690122 ACGCTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
3127 3143 4.982916 AGACGCTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
3128 3144 4.940463 AGACGCTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
3129 3145 3.793559 AGACGCTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
3130 3146 4.531659 AAGACGCTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
3131 3147 5.110598 TGTAAGACGCTTTTTGACACTACA 58.889 37.500 0.00 0.00 0.00 2.74
3132 3148 5.646467 TGTAAGACGCTTTTTGACACTAC 57.354 39.130 0.00 0.00 0.00 2.73
3133 3149 6.854496 AATGTAAGACGCTTTTTGACACTA 57.146 33.333 0.00 0.00 0.00 2.74
3134 3150 5.751243 AATGTAAGACGCTTTTTGACACT 57.249 34.783 0.00 0.00 0.00 3.55
3135 3151 6.523201 CCATAATGTAAGACGCTTTTTGACAC 59.477 38.462 0.00 0.00 0.00 3.67
3136 3152 6.348950 CCCATAATGTAAGACGCTTTTTGACA 60.349 38.462 0.00 0.00 0.00 3.58
3137 3153 6.027749 CCCATAATGTAAGACGCTTTTTGAC 58.972 40.000 0.00 0.00 0.00 3.18
3138 3154 5.941058 TCCCATAATGTAAGACGCTTTTTGA 59.059 36.000 0.00 0.00 0.00 2.69
3139 3155 6.027749 GTCCCATAATGTAAGACGCTTTTTG 58.972 40.000 0.00 0.00 0.00 2.44
3140 3156 5.163794 CGTCCCATAATGTAAGACGCTTTTT 60.164 40.000 0.00 0.00 43.07 1.94
3141 3157 4.331717 CGTCCCATAATGTAAGACGCTTTT 59.668 41.667 0.00 0.00 43.07 2.27
3142 3158 3.869246 CGTCCCATAATGTAAGACGCTTT 59.131 43.478 0.00 0.00 43.07 3.51
3143 3159 3.454375 CGTCCCATAATGTAAGACGCTT 58.546 45.455 0.00 0.00 43.07 4.68
3144 3160 2.223971 CCGTCCCATAATGTAAGACGCT 60.224 50.000 5.39 0.00 46.66 5.07
3145 3161 2.132762 CCGTCCCATAATGTAAGACGC 58.867 52.381 5.39 0.00 46.66 5.19
3147 3163 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
3148 3164 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3149 3165 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3150 3166 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3151 3167 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
3152 3168 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
3153 3169 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
3154 3170 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
3155 3171 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
3156 3172 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
3157 3173 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
3158 3174 1.284111 TAGCTACTCCCTCCGTCCCA 61.284 60.000 0.00 0.00 0.00 4.37
3159 3175 0.822944 GTAGCTACTCCCTCCGTCCC 60.823 65.000 16.88 0.00 0.00 4.46
3160 3176 0.183252 AGTAGCTACTCCCTCCGTCC 59.817 60.000 20.95 0.00 0.00 4.79
3161 3177 2.055684 AAGTAGCTACTCCCTCCGTC 57.944 55.000 26.21 0.00 34.99 4.79
3162 3178 3.880168 ATAAGTAGCTACTCCCTCCGT 57.120 47.619 26.21 11.63 34.99 4.69
3163 3179 3.506844 GGAATAAGTAGCTACTCCCTCCG 59.493 52.174 26.21 0.00 34.99 4.63
3164 3180 4.525100 CAGGAATAAGTAGCTACTCCCTCC 59.475 50.000 26.21 26.20 34.99 4.30
3165 3181 4.021807 GCAGGAATAAGTAGCTACTCCCTC 60.022 50.000 26.21 19.90 34.99 4.30
3166 3182 3.898741 GCAGGAATAAGTAGCTACTCCCT 59.101 47.826 26.21 23.36 34.99 4.20
3167 3183 3.641906 TGCAGGAATAAGTAGCTACTCCC 59.358 47.826 26.21 21.80 34.99 4.30
3168 3184 4.939052 TGCAGGAATAAGTAGCTACTCC 57.061 45.455 26.21 21.56 34.99 3.85
3169 3185 6.015350 TGGTATGCAGGAATAAGTAGCTACTC 60.015 42.308 26.21 13.85 34.99 2.59
3170 3186 5.839063 TGGTATGCAGGAATAAGTAGCTACT 59.161 40.000 20.95 20.95 38.39 2.57
3171 3187 6.097915 TGGTATGCAGGAATAAGTAGCTAC 57.902 41.667 16.43 16.43 0.00 3.58
3194 3210 7.047271 ACCTTTTGCTATTTTGACAACACAAT 58.953 30.769 0.00 0.00 32.30 2.71
3197 3213 6.039616 TGACCTTTTGCTATTTTGACAACAC 58.960 36.000 0.00 0.00 0.00 3.32
3211 3227 7.425606 TCTTCTCTTTTACATTGACCTTTTGC 58.574 34.615 0.00 0.00 0.00 3.68
3248 3264 6.053650 ACAAGTAAACTTCAGGTAACCAGAC 58.946 40.000 0.00 0.00 33.11 3.51
3251 3267 7.790823 GTTACAAGTAAACTTCAGGTAACCA 57.209 36.000 16.39 0.00 37.14 3.67
3382 3398 0.476771 ACCGGGGTTGTGATGAAACT 59.523 50.000 6.32 0.00 0.00 2.66
3402 3418 3.434984 TGCAAAACACAAGCAAAAAGGTC 59.565 39.130 0.00 0.00 34.97 3.85
3451 3467 2.416547 ACATGACTACTGATTTGCGTGC 59.583 45.455 0.00 0.00 0.00 5.34
3454 3470 7.463544 TCAATAAACATGACTACTGATTTGCG 58.536 34.615 0.00 0.00 0.00 4.85
3508 3526 7.336475 TGCATATAGGACATGGGGTATAAAA 57.664 36.000 0.00 0.00 0.00 1.52
3558 3576 1.236628 CCTAATGCCTGCTCATCTGC 58.763 55.000 0.00 0.00 0.00 4.26
3566 3584 0.803380 CAAAAGCGCCTAATGCCTGC 60.803 55.000 2.29 0.00 36.24 4.85
3567 3585 0.810648 TCAAAAGCGCCTAATGCCTG 59.189 50.000 2.29 0.00 36.24 4.85
3568 3586 1.406539 CATCAAAAGCGCCTAATGCCT 59.593 47.619 2.29 0.00 36.24 4.75
3569 3587 1.405105 TCATCAAAAGCGCCTAATGCC 59.595 47.619 2.29 0.00 36.24 4.40
3570 3588 2.724349 CTCATCAAAAGCGCCTAATGC 58.276 47.619 2.29 0.00 0.00 3.56
3571 3589 2.097954 TGCTCATCAAAAGCGCCTAATG 59.902 45.455 2.29 1.37 42.83 1.90
3572 3590 2.357009 CTGCTCATCAAAAGCGCCTAAT 59.643 45.455 2.29 0.00 42.83 1.73
3573 3591 1.739466 CTGCTCATCAAAAGCGCCTAA 59.261 47.619 2.29 0.00 42.83 2.69
3574 3592 1.372582 CTGCTCATCAAAAGCGCCTA 58.627 50.000 2.29 0.00 42.83 3.93
3588 3606 1.607801 GGGGCATTTGAACCCTGCTC 61.608 60.000 0.00 0.00 46.19 4.26
3600 3618 1.215423 GTCAGGGATAAGTGGGGCATT 59.785 52.381 0.00 0.00 0.00 3.56
3633 3651 2.119495 ACCAGGCACAGGGATTAGTAG 58.881 52.381 0.00 0.00 40.36 2.57
3708 3726 3.488047 CCTGCACTTCATATGCCTTTTCG 60.488 47.826 0.00 0.00 42.69 3.46
3717 3735 2.915349 CACTCTGCCTGCACTTCATAT 58.085 47.619 0.00 0.00 0.00 1.78
3748 3766 3.513515 CCCAATAGGCTAAAACAAGGCAA 59.486 43.478 0.00 0.00 44.19 4.52
3801 3820 2.425539 TGCTCTCGCATCATTTGAACA 58.574 42.857 0.00 0.00 42.25 3.18
3828 3847 1.002134 AGCACCATTCGGTCTTGGG 60.002 57.895 0.00 0.00 44.71 4.12
3854 3873 3.157087 TCAGGCATCAAAGGTTTCTTCC 58.843 45.455 0.00 0.00 31.82 3.46
3921 3940 3.182967 GAGTATCACTGACCTTCGCAAG 58.817 50.000 0.00 0.00 33.17 4.01
3952 3971 9.757227 CTTATCTAATCCTTGAGAAAGTACAGG 57.243 37.037 0.00 0.00 0.00 4.00
4072 4091 7.546667 TGAAGAATGGTCGGTTGTTAAGTATAC 59.453 37.037 0.00 0.00 0.00 1.47
4073 4092 7.613585 TGAAGAATGGTCGGTTGTTAAGTATA 58.386 34.615 0.00 0.00 0.00 1.47
4119 4138 5.762825 AATGCATGATGCCAAACTAGTAG 57.237 39.130 15.70 0.00 44.23 2.57
4132 4151 5.454187 CCCAGCCTCAATAAAAATGCATGAT 60.454 40.000 0.00 0.00 0.00 2.45
4155 4174 3.070018 CAACAGAGTGATGACAACTCCC 58.930 50.000 4.05 0.00 0.00 4.30
4159 4178 7.171508 TGAGAAATACAACAGAGTGATGACAAC 59.828 37.037 0.00 0.00 0.00 3.32
4161 4180 6.646653 GTGAGAAATACAACAGAGTGATGACA 59.353 38.462 0.00 0.00 0.00 3.58
4162 4181 6.870965 AGTGAGAAATACAACAGAGTGATGAC 59.129 38.462 0.00 0.00 0.00 3.06
4237 4256 0.396435 ATGGAACGGACAAGTGCAGA 59.604 50.000 0.00 0.00 0.00 4.26
4572 4594 1.453155 TTTCCAGCTTCTGATTCGGC 58.547 50.000 0.00 0.00 32.44 5.54
4672 4694 1.674221 GGCAGCACAAACCACAAACAA 60.674 47.619 0.00 0.00 0.00 2.83
4709 4731 4.885413 TCACCTTTTCGTCGGAGAAAATA 58.115 39.130 15.53 0.66 45.50 1.40
4710 4732 3.735591 TCACCTTTTCGTCGGAGAAAAT 58.264 40.909 15.53 4.00 45.50 1.82
4714 4736 1.890489 TCATCACCTTTTCGTCGGAGA 59.110 47.619 0.00 0.00 0.00 3.71
4729 4751 4.401202 TGAGACGCTGTTTAGGTATCATCA 59.599 41.667 0.00 0.00 27.99 3.07
4730 4752 4.933330 TGAGACGCTGTTTAGGTATCATC 58.067 43.478 0.00 0.00 27.99 2.92
4731 4753 5.537300 ATGAGACGCTGTTTAGGTATCAT 57.463 39.130 0.00 0.00 37.68 2.45
4736 4758 6.636705 TGTAAATATGAGACGCTGTTTAGGT 58.363 36.000 0.00 0.00 0.00 3.08
4741 4763 5.234329 CGGAATGTAAATATGAGACGCTGTT 59.766 40.000 0.00 0.00 0.00 3.16
4753 4775 4.590918 TGTTTGAGCCCGGAATGTAAATA 58.409 39.130 0.73 0.00 0.00 1.40
4754 4776 3.426615 TGTTTGAGCCCGGAATGTAAAT 58.573 40.909 0.73 0.00 0.00 1.40
4805 4827 1.301165 CCTGGCTGTTTGCAAAGGC 60.301 57.895 21.71 21.71 45.15 4.35
4806 4828 1.301165 GCCTGGCTGTTTGCAAAGG 60.301 57.895 13.26 10.24 44.90 3.11
4808 4830 1.741525 GAGCCTGGCTGTTTGCAAA 59.258 52.632 28.82 8.05 45.15 3.68
4810 4832 2.598394 GGAGCCTGGCTGTTTGCA 60.598 61.111 28.82 0.00 45.15 4.08
4811 4833 3.376918 GGGAGCCTGGCTGTTTGC 61.377 66.667 28.82 11.12 39.88 3.68
4848 4871 2.378038 AGAAGTGTCTTTTTGCCTGCA 58.622 42.857 0.00 0.00 0.00 4.41
4849 4872 3.067320 AGAAGAAGTGTCTTTTTGCCTGC 59.933 43.478 0.00 0.00 44.42 4.85
4850 4873 4.907879 AGAAGAAGTGTCTTTTTGCCTG 57.092 40.909 0.00 0.00 44.42 4.85
4851 4874 4.035675 CGAAGAAGAAGTGTCTTTTTGCCT 59.964 41.667 0.00 0.00 44.42 4.75
4852 4875 4.282873 CGAAGAAGAAGTGTCTTTTTGCC 58.717 43.478 0.00 0.00 44.42 4.52
4853 4876 4.201920 ACCGAAGAAGAAGTGTCTTTTTGC 60.202 41.667 0.00 0.00 44.42 3.68
4854 4877 5.485662 ACCGAAGAAGAAGTGTCTTTTTG 57.514 39.130 0.00 0.00 44.42 2.44
4857 4880 5.272283 TGTACCGAAGAAGAAGTGTCTTT 57.728 39.130 0.00 0.00 44.42 2.52
4858 4881 8.846033 GGGTTGTACCGAAGAAGAAGTGTCTT 62.846 46.154 0.00 0.00 42.47 3.01
4859 4882 4.501058 GGTTGTACCGAAGAAGAAGTGTCT 60.501 45.833 0.00 0.00 34.72 3.41
4860 4883 3.739810 GGTTGTACCGAAGAAGAAGTGTC 59.260 47.826 0.00 0.00 0.00 3.67
4861 4884 3.493873 GGGTTGTACCGAAGAAGAAGTGT 60.494 47.826 0.00 0.00 39.83 3.55
4862 4885 3.064931 GGGTTGTACCGAAGAAGAAGTG 58.935 50.000 0.00 0.00 39.83 3.16
4863 4886 2.038164 GGGGTTGTACCGAAGAAGAAGT 59.962 50.000 0.00 0.00 39.83 3.01
4864 4887 2.614734 GGGGGTTGTACCGAAGAAGAAG 60.615 54.545 0.00 0.00 39.83 2.85
4865 4888 1.348696 GGGGGTTGTACCGAAGAAGAA 59.651 52.381 0.00 0.00 39.83 2.52
4866 4889 0.978907 GGGGGTTGTACCGAAGAAGA 59.021 55.000 0.00 0.00 39.83 2.87
4867 4890 0.981943 AGGGGGTTGTACCGAAGAAG 59.018 55.000 0.00 0.00 39.83 2.85
4868 4891 1.437397 AAGGGGGTTGTACCGAAGAA 58.563 50.000 0.00 0.00 39.83 2.52
4869 4892 2.323999 TAAGGGGGTTGTACCGAAGA 57.676 50.000 0.00 0.00 39.83 2.87
4870 4893 3.076621 GTTTAAGGGGGTTGTACCGAAG 58.923 50.000 0.00 0.00 39.83 3.79
4871 4894 2.441001 TGTTTAAGGGGGTTGTACCGAA 59.559 45.455 0.00 0.00 39.83 4.30
4872 4895 2.053244 TGTTTAAGGGGGTTGTACCGA 58.947 47.619 0.00 0.00 39.83 4.69
4873 4896 2.153645 GTGTTTAAGGGGGTTGTACCG 58.846 52.381 0.00 0.00 39.83 4.02
4874 4897 3.226682 TGTGTTTAAGGGGGTTGTACC 57.773 47.619 0.00 0.00 37.60 3.34
4875 4898 3.952967 TGTTGTGTTTAAGGGGGTTGTAC 59.047 43.478 0.00 0.00 0.00 2.90
4876 4899 4.246712 TGTTGTGTTTAAGGGGGTTGTA 57.753 40.909 0.00 0.00 0.00 2.41
4877 4900 3.103080 TGTTGTGTTTAAGGGGGTTGT 57.897 42.857 0.00 0.00 0.00 3.32
4878 4901 3.735514 CGTTGTTGTGTTTAAGGGGGTTG 60.736 47.826 0.00 0.00 0.00 3.77
4879 4902 2.427812 CGTTGTTGTGTTTAAGGGGGTT 59.572 45.455 0.00 0.00 0.00 4.11
4880 4903 2.025898 CGTTGTTGTGTTTAAGGGGGT 58.974 47.619 0.00 0.00 0.00 4.95
4881 4904 2.033675 GTCGTTGTTGTGTTTAAGGGGG 59.966 50.000 0.00 0.00 0.00 5.40
4882 4905 2.946990 AGTCGTTGTTGTGTTTAAGGGG 59.053 45.455 0.00 0.00 0.00 4.79
4883 4906 3.623960 TCAGTCGTTGTTGTGTTTAAGGG 59.376 43.478 0.00 0.00 0.00 3.95
4884 4907 4.569162 TCTCAGTCGTTGTTGTGTTTAAGG 59.431 41.667 0.00 0.00 0.00 2.69
4885 4908 5.712217 TCTCAGTCGTTGTTGTGTTTAAG 57.288 39.130 0.00 0.00 0.00 1.85
4886 4909 5.051307 CGATCTCAGTCGTTGTTGTGTTTAA 60.051 40.000 0.00 0.00 36.88 1.52
4887 4910 4.443063 CGATCTCAGTCGTTGTTGTGTTTA 59.557 41.667 0.00 0.00 36.88 2.01
4888 4911 3.245284 CGATCTCAGTCGTTGTTGTGTTT 59.755 43.478 0.00 0.00 36.88 2.83
4889 4912 2.794910 CGATCTCAGTCGTTGTTGTGTT 59.205 45.455 0.00 0.00 36.88 3.32
4890 4913 2.394708 CGATCTCAGTCGTTGTTGTGT 58.605 47.619 0.00 0.00 36.88 3.72
4891 4914 1.125021 GCGATCTCAGTCGTTGTTGTG 59.875 52.381 0.00 0.00 43.27 3.33
4892 4915 1.269569 TGCGATCTCAGTCGTTGTTGT 60.270 47.619 0.00 0.00 43.27 3.32
4893 4916 1.125021 GTGCGATCTCAGTCGTTGTTG 59.875 52.381 0.00 0.00 43.27 3.33
4894 4917 1.419374 GTGCGATCTCAGTCGTTGTT 58.581 50.000 0.00 0.00 43.27 2.83
4895 4918 0.388649 GGTGCGATCTCAGTCGTTGT 60.389 55.000 0.00 0.00 43.27 3.32
4896 4919 1.078759 GGGTGCGATCTCAGTCGTTG 61.079 60.000 0.00 0.00 43.27 4.10
4897 4920 1.215647 GGGTGCGATCTCAGTCGTT 59.784 57.895 0.00 0.00 43.27 3.85
4898 4921 0.393944 TAGGGTGCGATCTCAGTCGT 60.394 55.000 0.00 0.00 43.27 4.34
4899 4922 0.029567 GTAGGGTGCGATCTCAGTCG 59.970 60.000 0.00 0.00 44.14 4.18
4900 4923 0.386113 GGTAGGGTGCGATCTCAGTC 59.614 60.000 0.00 0.00 0.00 3.51
4901 4924 1.043673 GGGTAGGGTGCGATCTCAGT 61.044 60.000 0.00 0.00 0.00 3.41
4902 4925 1.742768 GGGTAGGGTGCGATCTCAG 59.257 63.158 0.00 0.00 0.00 3.35
4903 4926 1.760875 GGGGTAGGGTGCGATCTCA 60.761 63.158 0.00 0.00 0.00 3.27
4904 4927 1.049289 AAGGGGTAGGGTGCGATCTC 61.049 60.000 0.00 0.00 0.00 2.75
4905 4928 1.003051 AAGGGGTAGGGTGCGATCT 59.997 57.895 0.00 0.00 0.00 2.75
4906 4929 1.335132 TGAAGGGGTAGGGTGCGATC 61.335 60.000 0.00 0.00 0.00 3.69
4907 4930 0.694444 ATGAAGGGGTAGGGTGCGAT 60.694 55.000 0.00 0.00 0.00 4.58
4908 4931 0.912487 AATGAAGGGGTAGGGTGCGA 60.912 55.000 0.00 0.00 0.00 5.10
4909 4932 0.834612 TAATGAAGGGGTAGGGTGCG 59.165 55.000 0.00 0.00 0.00 5.34
4910 4933 3.375647 TTTAATGAAGGGGTAGGGTGC 57.624 47.619 0.00 0.00 0.00 5.01
4911 4934 4.709886 CCTTTTTAATGAAGGGGTAGGGTG 59.290 45.833 9.30 0.00 39.99 4.61
4912 4935 4.942944 CCTTTTTAATGAAGGGGTAGGGT 58.057 43.478 9.30 0.00 39.99 4.34
4920 4943 6.120220 ACGATCCTACCCTTTTTAATGAAGG 58.880 40.000 9.95 9.95 42.68 3.46
4921 4944 6.260271 GGACGATCCTACCCTTTTTAATGAAG 59.740 42.308 0.00 0.00 32.53 3.02
4922 4945 6.117488 GGACGATCCTACCCTTTTTAATGAA 58.883 40.000 0.00 0.00 32.53 2.57
4923 4946 5.397109 GGGACGATCCTACCCTTTTTAATGA 60.397 44.000 8.66 0.00 40.39 2.57
4924 4947 4.820173 GGGACGATCCTACCCTTTTTAATG 59.180 45.833 8.66 0.00 40.39 1.90
4925 4948 4.475747 TGGGACGATCCTACCCTTTTTAAT 59.524 41.667 14.74 0.00 43.59 1.40
4926 4949 3.845398 TGGGACGATCCTACCCTTTTTAA 59.155 43.478 14.74 0.00 43.59 1.52
4927 4950 3.452878 TGGGACGATCCTACCCTTTTTA 58.547 45.455 14.74 0.00 43.59 1.52
4928 4951 2.238898 CTGGGACGATCCTACCCTTTTT 59.761 50.000 14.74 0.00 43.59 1.94
4929 4952 1.838077 CTGGGACGATCCTACCCTTTT 59.162 52.381 14.74 0.00 43.59 2.27
4930 4953 1.497161 CTGGGACGATCCTACCCTTT 58.503 55.000 14.74 0.00 43.59 3.11
4931 4954 1.049289 GCTGGGACGATCCTACCCTT 61.049 60.000 14.74 0.00 43.59 3.95
4932 4955 1.457831 GCTGGGACGATCCTACCCT 60.458 63.158 14.74 0.00 43.59 4.34
4933 4956 1.760875 TGCTGGGACGATCCTACCC 60.761 63.158 8.91 8.91 43.51 3.69
4934 4957 1.327690 TGTGCTGGGACGATCCTACC 61.328 60.000 0.00 0.00 36.57 3.18
4935 4958 0.753262 ATGTGCTGGGACGATCCTAC 59.247 55.000 0.00 0.00 36.57 3.18
4936 4959 2.375014 TATGTGCTGGGACGATCCTA 57.625 50.000 0.00 0.00 36.57 2.94
4937 4960 1.496060 TTATGTGCTGGGACGATCCT 58.504 50.000 0.00 0.00 36.57 3.24
4938 4961 2.325583 TTTATGTGCTGGGACGATCC 57.674 50.000 0.00 0.00 35.23 3.36
4939 4962 3.487544 GCTTTTTATGTGCTGGGACGATC 60.488 47.826 0.00 0.00 0.00 3.69
4940 4963 2.423538 GCTTTTTATGTGCTGGGACGAT 59.576 45.455 0.00 0.00 0.00 3.73
4941 4964 1.810151 GCTTTTTATGTGCTGGGACGA 59.190 47.619 0.00 0.00 0.00 4.20
4942 4965 1.135402 GGCTTTTTATGTGCTGGGACG 60.135 52.381 0.00 0.00 0.00 4.79
4943 4966 1.135402 CGGCTTTTTATGTGCTGGGAC 60.135 52.381 0.00 0.00 0.00 4.46
4944 4967 1.173043 CGGCTTTTTATGTGCTGGGA 58.827 50.000 0.00 0.00 0.00 4.37
4945 4968 0.458370 GCGGCTTTTTATGTGCTGGG 60.458 55.000 0.00 0.00 34.01 4.45
4946 4969 0.458370 GGCGGCTTTTTATGTGCTGG 60.458 55.000 0.00 0.00 34.01 4.85
4947 4970 0.798009 CGGCGGCTTTTTATGTGCTG 60.798 55.000 7.61 0.00 36.28 4.41
4948 4971 1.506262 CGGCGGCTTTTTATGTGCT 59.494 52.632 7.61 0.00 0.00 4.40
4949 4972 2.158330 GCGGCGGCTTTTTATGTGC 61.158 57.895 9.78 0.00 35.83 4.57
4950 4973 1.516169 GGCGGCGGCTTTTTATGTG 60.516 57.895 27.22 0.00 39.81 3.21
4951 4974 2.706834 GGGCGGCGGCTTTTTATGT 61.707 57.895 32.30 0.00 39.81 2.29
4952 4975 2.104132 GGGCGGCGGCTTTTTATG 59.896 61.111 32.30 0.00 39.81 1.90
4953 4976 3.514362 CGGGCGGCGGCTTTTTAT 61.514 61.111 32.30 0.00 39.81 1.40
5002 5025 3.107661 CGTCACGCGGGTACAACC 61.108 66.667 8.89 0.00 37.60 3.77
5023 5046 1.063174 GTACAGGTAGTCGGCGTACAG 59.937 57.143 6.85 2.56 34.07 2.74
5024 5047 1.086696 GTACAGGTAGTCGGCGTACA 58.913 55.000 6.85 0.00 34.07 2.90
5025 5048 1.086696 TGTACAGGTAGTCGGCGTAC 58.913 55.000 6.85 2.56 34.40 3.67
5026 5049 1.672363 CATGTACAGGTAGTCGGCGTA 59.328 52.381 6.85 0.00 0.00 4.42
5027 5050 0.454600 CATGTACAGGTAGTCGGCGT 59.545 55.000 6.85 0.00 0.00 5.68
5028 5051 0.870307 GCATGTACAGGTAGTCGGCG 60.870 60.000 9.57 0.00 0.00 6.46
5029 5052 0.870307 CGCATGTACAGGTAGTCGGC 60.870 60.000 9.57 0.00 0.00 5.54
5030 5053 0.454600 ACGCATGTACAGGTAGTCGG 59.545 55.000 9.57 0.00 0.00 4.79
5031 5054 1.533338 GGACGCATGTACAGGTAGTCG 60.533 57.143 22.14 14.63 0.00 4.18
5032 5055 1.533338 CGGACGCATGTACAGGTAGTC 60.533 57.143 21.44 21.44 0.00 2.59
5033 5056 0.454600 CGGACGCATGTACAGGTAGT 59.545 55.000 9.57 9.68 0.00 2.73
5034 5057 0.454600 ACGGACGCATGTACAGGTAG 59.545 55.000 9.57 6.50 0.00 3.18
5035 5058 0.452987 GACGGACGCATGTACAGGTA 59.547 55.000 9.57 0.00 0.00 3.08
5036 5059 1.214589 GACGGACGCATGTACAGGT 59.785 57.895 9.57 3.05 0.00 4.00
5037 5060 1.518572 GGACGGACGCATGTACAGG 60.519 63.158 2.43 2.43 0.00 4.00
5038 5061 1.076533 GTGGACGGACGCATGTACAG 61.077 60.000 0.33 0.00 27.22 2.74
5039 5062 1.080366 GTGGACGGACGCATGTACA 60.080 57.895 0.00 0.00 0.00 2.90
5040 5063 2.156446 CGTGGACGGACGCATGTAC 61.156 63.158 0.00 0.00 35.37 2.90
5041 5064 1.304509 TACGTGGACGGACGCATGTA 61.305 55.000 0.00 0.00 43.33 2.29
5042 5065 2.628696 TACGTGGACGGACGCATGT 61.629 57.895 0.00 0.00 43.33 3.21
5043 5066 2.156446 GTACGTGGACGGACGCATG 61.156 63.158 0.00 0.00 43.86 4.06
5044 5067 2.180017 GTACGTGGACGGACGCAT 59.820 61.111 0.00 0.00 43.86 4.73
5058 5081 0.443869 TTGCTCGTCCTCGTACGTAC 59.556 55.000 15.90 15.90 43.31 3.67
5059 5082 1.129251 CTTTGCTCGTCCTCGTACGTA 59.871 52.381 16.05 0.00 43.31 3.57
5060 5083 0.109873 CTTTGCTCGTCCTCGTACGT 60.110 55.000 16.05 0.00 43.31 3.57
5061 5084 0.167470 TCTTTGCTCGTCCTCGTACG 59.833 55.000 9.53 9.53 44.19 3.67
5062 5085 2.342910 TTCTTTGCTCGTCCTCGTAC 57.657 50.000 0.00 0.00 38.33 3.67
5063 5086 3.374220 TTTTCTTTGCTCGTCCTCGTA 57.626 42.857 0.00 0.00 38.33 3.43
5064 5087 2.234300 TTTTCTTTGCTCGTCCTCGT 57.766 45.000 0.00 0.00 38.33 4.18
5083 5106 1.929376 GACAGGTCGCGTCGTTTTT 59.071 52.632 5.77 0.00 0.00 1.94
5084 5107 3.621520 GACAGGTCGCGTCGTTTT 58.378 55.556 5.77 0.00 0.00 2.43
5094 5117 0.733729 AGTACATCGCTCGACAGGTC 59.266 55.000 0.00 0.00 0.00 3.85
5095 5118 0.733729 GAGTACATCGCTCGACAGGT 59.266 55.000 0.00 0.00 0.00 4.00
5096 5119 3.535691 GAGTACATCGCTCGACAGG 57.464 57.895 0.00 0.00 0.00 4.00
5115 5138 2.313267 TTTTTCTCCACGTCGCCAC 58.687 52.632 0.00 0.00 0.00 5.01
5116 5139 4.859400 TTTTTCTCCACGTCGCCA 57.141 50.000 0.00 0.00 0.00 5.69
5133 5156 1.929376 GACAGGTCGCGTCGTTTTT 59.071 52.632 5.77 0.00 0.00 1.94
5134 5157 3.621520 GACAGGTCGCGTCGTTTT 58.378 55.556 5.77 0.00 0.00 2.43
5144 5167 1.225963 GTACGTCGCTCGACAGGTC 60.226 63.158 20.35 5.88 44.77 3.85
5145 5168 1.633852 GAGTACGTCGCTCGACAGGT 61.634 60.000 20.35 13.69 44.77 4.00
5146 5169 1.060622 GAGTACGTCGCTCGACAGG 59.939 63.158 20.35 9.01 44.77 4.00
5147 5170 4.647491 GAGTACGTCGCTCGACAG 57.353 61.111 20.35 15.12 44.77 3.51
5192 5215 4.792189 TCGCGTCGTGTTATTTTTGTTTTT 59.208 33.333 5.77 0.00 0.00 1.94
5193 5216 4.202759 GTCGCGTCGTGTTATTTTTGTTTT 59.797 37.500 5.77 0.00 0.00 2.43
5194 5217 3.720328 GTCGCGTCGTGTTATTTTTGTTT 59.280 39.130 5.77 0.00 0.00 2.83
5195 5218 3.282428 GTCGCGTCGTGTTATTTTTGTT 58.718 40.909 5.77 0.00 0.00 2.83
5196 5219 2.657162 CGTCGCGTCGTGTTATTTTTGT 60.657 45.455 17.43 0.00 0.00 2.83
5197 5220 1.887480 CGTCGCGTCGTGTTATTTTTG 59.113 47.619 17.43 0.00 0.00 2.44
5198 5221 1.522258 ACGTCGCGTCGTGTTATTTTT 59.478 42.857 29.00 2.19 42.56 1.94
5199 5222 1.130955 ACGTCGCGTCGTGTTATTTT 58.869 45.000 29.00 2.95 42.56 1.82
5200 5223 2.800096 ACGTCGCGTCGTGTTATTT 58.200 47.368 29.00 3.73 42.56 1.40
5201 5224 4.539152 ACGTCGCGTCGTGTTATT 57.461 50.000 29.00 4.49 42.56 1.40
5208 5231 4.967730 TCCACACACGTCGCGTCG 62.968 66.667 23.39 23.39 38.32 5.12
5209 5232 3.392440 GTCCACACACGTCGCGTC 61.392 66.667 5.77 0.00 38.32 5.19
5217 5240 4.922026 AACGCCCCGTCCACACAC 62.922 66.667 0.00 0.00 39.99 3.82
5218 5241 4.920112 CAACGCCCCGTCCACACA 62.920 66.667 0.00 0.00 39.99 3.72
5219 5242 4.922026 ACAACGCCCCGTCCACAC 62.922 66.667 0.00 0.00 39.99 3.82
5220 5243 4.920112 CACAACGCCCCGTCCACA 62.920 66.667 0.00 0.00 39.99 4.17
5221 5244 4.922026 ACACAACGCCCCGTCCAC 62.922 66.667 0.00 0.00 39.99 4.02
5222 5245 4.920112 CACACAACGCCCCGTCCA 62.920 66.667 0.00 0.00 39.99 4.02
5230 5253 0.110192 GCTTAGAAGGCACACAACGC 60.110 55.000 0.00 0.00 0.00 4.84
5231 5254 0.163788 CGCTTAGAAGGCACACAACG 59.836 55.000 0.00 0.00 0.00 4.10
5232 5255 1.194772 GTCGCTTAGAAGGCACACAAC 59.805 52.381 0.00 0.00 0.00 3.32
5233 5256 1.508632 GTCGCTTAGAAGGCACACAA 58.491 50.000 0.00 0.00 0.00 3.33
5234 5257 0.666274 CGTCGCTTAGAAGGCACACA 60.666 55.000 0.00 0.00 0.00 3.72
5235 5258 1.352156 CCGTCGCTTAGAAGGCACAC 61.352 60.000 0.00 0.00 41.40 3.82
5236 5259 1.080093 CCGTCGCTTAGAAGGCACA 60.080 57.895 0.00 0.00 41.40 4.57
5237 5260 3.782042 CCGTCGCTTAGAAGGCAC 58.218 61.111 0.00 0.00 41.40 5.01
5241 5264 1.630148 CCTTGACCGTCGCTTAGAAG 58.370 55.000 0.00 0.00 0.00 2.85
5242 5265 0.245539 CCCTTGACCGTCGCTTAGAA 59.754 55.000 0.00 0.00 0.00 2.10
5243 5266 1.888018 CCCTTGACCGTCGCTTAGA 59.112 57.895 0.00 0.00 0.00 2.10
5244 5267 1.810030 GCCCTTGACCGTCGCTTAG 60.810 63.158 0.00 0.00 0.00 2.18
5245 5268 2.263540 GCCCTTGACCGTCGCTTA 59.736 61.111 0.00 0.00 0.00 3.09
5249 5272 4.675029 AACCGCCCTTGACCGTCG 62.675 66.667 0.00 0.00 0.00 5.12
5250 5273 2.741211 GAACCGCCCTTGACCGTC 60.741 66.667 0.00 0.00 0.00 4.79
5251 5274 4.324991 GGAACCGCCCTTGACCGT 62.325 66.667 0.00 0.00 0.00 4.83
5283 5306 1.081242 CATTAATGGCGCATCGGGC 60.081 57.895 10.83 0.00 40.84 6.13
5284 5307 1.081242 GCATTAATGGCGCATCGGG 60.081 57.895 17.02 0.00 0.00 5.14
5285 5308 1.081242 GGCATTAATGGCGCATCGG 60.081 57.895 24.24 0.00 43.58 4.18
5286 5309 4.539152 GGCATTAATGGCGCATCG 57.461 55.556 24.24 0.00 43.58 3.84
5293 5316 1.599419 GCTTAACGCCGGCATTAATGG 60.599 52.381 26.18 17.16 0.00 3.16
5294 5317 1.753956 GCTTAACGCCGGCATTAATG 58.246 50.000 26.18 19.99 0.00 1.90
5322 5345 4.139234 GCCGTCCGGTAGGTGACC 62.139 72.222 16.87 0.00 45.91 4.02
5323 5346 4.139234 GGCCGTCCGGTAGGTGAC 62.139 72.222 16.87 0.00 39.05 3.67
5324 5347 4.371417 AGGCCGTCCGGTAGGTGA 62.371 66.667 16.87 0.00 39.05 4.02
5325 5348 3.834799 GAGGCCGTCCGGTAGGTG 61.835 72.222 16.87 0.00 39.05 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.