Multiple sequence alignment - TraesCS6A01G118900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G118900 chr6A 100.000 4653 0 0 1 4653 89964019 89968671 0.000000e+00 8593.0
1 TraesCS6A01G118900 chr6D 91.708 1628 61 27 710 2289 73515890 73517491 0.000000e+00 2191.0
2 TraesCS6A01G118900 chr6D 91.581 1354 82 19 2535 3868 73517526 73518867 0.000000e+00 1840.0
3 TraesCS6A01G118900 chr6D 95.618 502 13 7 4155 4653 73519274 73519769 0.000000e+00 797.0
4 TraesCS6A01G118900 chr6D 88.889 540 42 11 1 525 73515038 73515574 0.000000e+00 649.0
5 TraesCS6A01G118900 chr6D 85.619 299 28 6 3870 4159 73518934 73519226 2.720000e-77 300.0
6 TraesCS6A01G118900 chr6D 83.077 195 25 6 2349 2537 49270637 49270829 2.230000e-38 171.0
7 TraesCS6A01G118900 chr6B 91.010 1624 68 25 778 2351 147878471 147880066 0.000000e+00 2119.0
8 TraesCS6A01G118900 chr6B 93.879 1356 51 13 2535 3867 147880053 147881399 0.000000e+00 2015.0
9 TraesCS6A01G118900 chr6B 90.414 532 41 6 1 524 147864991 147865520 0.000000e+00 691.0
10 TraesCS6A01G118900 chr6B 94.931 217 7 3 4435 4651 147882166 147882378 2.070000e-88 337.0
11 TraesCS6A01G118900 chr6B 85.294 306 29 8 3866 4159 147881460 147881761 7.570000e-78 302.0
12 TraesCS6A01G118900 chr6B 91.398 186 11 5 523 704 147865607 147865791 2.780000e-62 250.0
13 TraesCS6A01G118900 chr1B 95.312 192 7 2 2348 2537 683314854 683315045 2.100000e-78 303.0
14 TraesCS6A01G118900 chr1B 95.263 190 7 2 2350 2537 683299072 683299261 2.720000e-77 300.0
15 TraesCS6A01G118900 chr1B 78.610 374 68 11 2682 3049 670293811 670293444 2.160000e-58 237.0
16 TraesCS6A01G118900 chr5B 94.764 191 8 1 2349 2537 556781977 556781787 3.520000e-76 296.0
17 TraesCS6A01G118900 chr2B 94.241 191 9 1 2349 2537 795266188 795266378 1.640000e-74 291.0
18 TraesCS6A01G118900 chr5D 93.299 194 7 3 2350 2537 35133468 35133275 9.860000e-72 281.0
19 TraesCS6A01G118900 chr4D 76.361 588 81 35 1262 1803 44530160 44530735 3.570000e-66 263.0
20 TraesCS6A01G118900 chr1A 92.063 189 12 2 2351 2537 486403283 486403096 3.570000e-66 263.0
21 TraesCS6A01G118900 chr1A 76.117 582 81 39 1269 1803 67739338 67738768 7.730000e-63 252.0
22 TraesCS6A01G118900 chr2A 91.579 190 14 1 2350 2537 40619720 40619531 1.280000e-65 261.0
23 TraesCS6A01G118900 chr2A 82.759 87 10 4 616 699 20792265 20792181 6.460000e-09 73.1
24 TraesCS6A01G118900 chr4A 75.945 582 82 34 1269 1803 467675785 467675215 3.600000e-61 246.0
25 TraesCS6A01G118900 chrUn 75.559 581 81 36 1269 1803 28699863 28699298 3.620000e-56 230.0
26 TraesCS6A01G118900 chrUn 77.444 399 71 15 2658 3049 28698475 28698089 2.180000e-53 220.0
27 TraesCS6A01G118900 chr2D 90.196 153 9 4 2349 2499 99659102 99659250 1.320000e-45 195.0
28 TraesCS6A01G118900 chr2D 80.526 190 25 9 523 707 485752505 485752323 8.120000e-28 135.0
29 TraesCS6A01G118900 chr2D 82.759 116 16 3 592 704 19055114 19055228 2.960000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G118900 chr6A 89964019 89968671 4652 False 8593.00 8593 100.0000 1 4653 1 chr6A.!!$F1 4652
1 TraesCS6A01G118900 chr6D 73515038 73519769 4731 False 1155.40 2191 90.6830 1 4653 5 chr6D.!!$F2 4652
2 TraesCS6A01G118900 chr6B 147878471 147882378 3907 False 1193.25 2119 91.2785 778 4651 4 chr6B.!!$F2 3873
3 TraesCS6A01G118900 chr6B 147864991 147865791 800 False 470.50 691 90.9060 1 704 2 chr6B.!!$F1 703
4 TraesCS6A01G118900 chr4D 44530160 44530735 575 False 263.00 263 76.3610 1262 1803 1 chr4D.!!$F1 541
5 TraesCS6A01G118900 chr1A 67738768 67739338 570 True 252.00 252 76.1170 1269 1803 1 chr1A.!!$R1 534
6 TraesCS6A01G118900 chr4A 467675215 467675785 570 True 246.00 246 75.9450 1269 1803 1 chr4A.!!$R1 534
7 TraesCS6A01G118900 chrUn 28698089 28699863 1774 True 225.00 230 76.5015 1269 3049 2 chrUn.!!$R1 1780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
704 821 0.749649 TTTGCACGCCCACAGAAAAT 59.250 45.0 0.00 0.00 0.00 1.82 F
2128 2523 0.036952 ATGCTACGCAACTGTCTGCT 60.037 50.0 11.29 4.12 43.62 4.24 F
2458 2932 0.031716 CATGGGGTCAGAGGGAGAGA 60.032 60.0 0.00 0.00 0.00 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2439 2913 0.031716 TCTCTCCCTCTGACCCCATG 60.032 60.0 0.00 0.0 0.00 3.66 R
3427 3914 0.041312 CACAAGAAAGCGTGAACGGG 60.041 55.0 4.84 0.0 40.23 5.28 R
4174 4832 0.030638 CACAGGGCAAAACGAACCAG 59.969 55.0 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.008375 ACTGCTTTCTCTTGCATGGTCTA 59.992 43.478 0.00 0.00 38.59 2.59
210 216 4.164981 GGGGGTATATATATGGCCGATGA 58.835 47.826 5.44 0.00 0.00 2.92
218 225 9.547753 GTATATATATGGCCGATGATGTTTCTT 57.452 33.333 5.44 0.00 0.00 2.52
234 241 7.439356 TGATGTTTCTTCTTGTACAAGACTCTG 59.561 37.037 32.81 22.72 46.13 3.35
243 250 8.644318 TCTTGTACAAGACTCTGTTTTCTTAC 57.356 34.615 30.07 0.00 42.06 2.34
259 266 4.666412 TCTTACATGAAAATGGGGTCCA 57.334 40.909 0.00 0.00 38.19 4.02
260 267 5.004361 TCTTACATGAAAATGGGGTCCAA 57.996 39.130 0.00 0.00 36.95 3.53
261 268 5.398236 TCTTACATGAAAATGGGGTCCAAA 58.602 37.500 0.00 0.00 36.95 3.28
280 288 6.707608 GTCCAAAAGCTCCTTTGATTGAAAAT 59.292 34.615 11.64 0.00 38.35 1.82
281 289 7.227314 GTCCAAAAGCTCCTTTGATTGAAAATT 59.773 33.333 11.64 0.00 38.35 1.82
354 367 4.357097 AGAATAAAGGAGGGTTCCAAGGTT 59.643 41.667 0.00 0.00 46.64 3.50
364 377 3.359033 GGTTCCAAGGTTATTACCCACC 58.641 50.000 0.00 0.00 46.28 4.61
373 386 7.014230 CCAAGGTTATTACCCACCTGAATATTG 59.986 40.741 0.00 0.00 46.28 1.90
380 393 4.792068 ACCCACCTGAATATTGTATGGTG 58.208 43.478 14.09 14.09 43.06 4.17
436 455 6.998074 AGAATGTCACTCTTTATTGGTCACAA 59.002 34.615 0.00 0.00 41.59 3.33
456 475 9.010366 GTCACAAAAATTCACTACAAAGAGTTC 57.990 33.333 0.00 0.00 0.00 3.01
494 516 8.297470 ACATTGCACAGGATAAAATCATAAGT 57.703 30.769 0.00 0.00 0.00 2.24
511 533 6.108687 TCATAAGTAGCACACAATTGAGGAG 58.891 40.000 13.59 2.89 0.00 3.69
514 536 5.171339 AGTAGCACACAATTGAGGAGAAT 57.829 39.130 13.59 0.00 0.00 2.40
534 647 5.704978 AGAATGTTTTGGTGCACAAGTTTTT 59.295 32.000 20.43 3.52 40.82 1.94
587 700 0.970937 TCGTAGGGGCTCTGGACAAG 60.971 60.000 0.00 0.00 0.00 3.16
601 717 5.496556 TCTGGACAAGAAAACAGAGTTTCA 58.503 37.500 0.00 0.00 39.52 2.69
633 749 8.898761 GGTTTAGAATTTTTGGTTTTGGAACAT 58.101 29.630 0.00 0.00 39.30 2.71
642 758 5.747951 TGGTTTTGGAACATTGATTTTGC 57.252 34.783 0.00 0.00 39.30 3.68
683 800 7.379059 TCCTCCTATGTCACATTGTCATAAT 57.621 36.000 0.00 0.00 30.41 1.28
704 821 0.749649 TTTGCACGCCCACAGAAAAT 59.250 45.000 0.00 0.00 0.00 1.82
707 824 1.269517 TGCACGCCCACAGAAAATTTC 60.270 47.619 0.00 0.00 0.00 2.17
708 825 1.934849 GCACGCCCACAGAAAATTTCC 60.935 52.381 1.57 0.00 0.00 3.13
732 889 9.693739 TCCTTATTTTAATTTACTGCTCATCCA 57.306 29.630 0.00 0.00 0.00 3.41
767 924 5.348986 TCTCGTGTCCAGCTATGTATTTTC 58.651 41.667 0.00 0.00 0.00 2.29
838 998 5.841810 TGACACCACAAAAGAAATCCATTC 58.158 37.500 0.00 0.00 38.39 2.67
863 1023 4.782691 CCCCTAAAAGAAATCCATTTGGGT 59.217 41.667 11.51 0.00 34.07 4.51
930 1097 4.238514 TGGTTAATTTTCATTTTCGCCGG 58.761 39.130 0.00 0.00 0.00 6.13
1074 1243 1.078143 GCTGCTCCGGAACTTCCAT 60.078 57.895 5.23 0.00 35.91 3.41
1282 1451 3.179830 CACATACGCTCAGGTGTTAGAC 58.820 50.000 0.00 0.00 37.38 2.59
1335 1510 2.511600 GTCTCCGACGGCATTGGG 60.512 66.667 9.66 0.00 31.64 4.12
1388 1577 0.179045 CAGCTTCCCTTCCCGTATGG 60.179 60.000 0.00 0.00 0.00 2.74
1419 1613 1.517694 CCAATGCTGCGGATTGTGC 60.518 57.895 16.72 0.00 0.00 4.57
1549 1743 4.675146 CGAACCCACTGCAAATTATTCCTG 60.675 45.833 0.00 0.00 0.00 3.86
1583 1783 5.891551 GCTATTTCAATTCCTAAGTCCCCAA 59.108 40.000 0.00 0.00 0.00 4.12
1588 1788 8.909423 TTTCAATTCCTAAGTCCCCAATAAAT 57.091 30.769 0.00 0.00 0.00 1.40
1589 1789 8.909423 TTCAATTCCTAAGTCCCCAATAAATT 57.091 30.769 0.00 0.00 0.00 1.82
1590 1790 8.533569 TCAATTCCTAAGTCCCCAATAAATTC 57.466 34.615 0.00 0.00 0.00 2.17
1591 1791 8.343787 TCAATTCCTAAGTCCCCAATAAATTCT 58.656 33.333 0.00 0.00 0.00 2.40
1592 1792 8.416329 CAATTCCTAAGTCCCCAATAAATTCTG 58.584 37.037 0.00 0.00 0.00 3.02
1593 1793 6.652205 TCCTAAGTCCCCAATAAATTCTGT 57.348 37.500 0.00 0.00 0.00 3.41
1607 1827 1.194781 TTCTGTGGGGCAGGAGAGAC 61.195 60.000 0.00 0.00 45.08 3.36
1616 1837 1.742268 GGCAGGAGAGACTGATTTTGC 59.258 52.381 0.00 0.00 40.97 3.68
1619 1840 3.254166 GCAGGAGAGACTGATTTTGCAAA 59.746 43.478 8.05 8.05 40.97 3.68
1754 1977 6.588204 TCTTCTGTTGTTTACTGGCTCTTTA 58.412 36.000 0.00 0.00 0.00 1.85
1790 2013 5.221541 GGTATAAAGATGCACTAGCTGAGGT 60.222 44.000 0.00 0.00 42.74 3.85
1901 2277 4.588106 TGAAATTCCAGCATTCTTCCACAA 59.412 37.500 0.00 0.00 0.00 3.33
1903 2279 4.996788 ATTCCAGCATTCTTCCACAATC 57.003 40.909 0.00 0.00 0.00 2.67
1916 2292 2.158475 TCCACAATCCAGTCCAGCTTTT 60.158 45.455 0.00 0.00 0.00 2.27
2118 2513 1.463056 GTGCAGTTACAATGCTACGCA 59.537 47.619 0.00 0.00 44.17 5.24
2119 2514 2.095969 GTGCAGTTACAATGCTACGCAA 60.096 45.455 0.00 0.00 43.62 4.85
2120 2515 2.095969 TGCAGTTACAATGCTACGCAAC 60.096 45.455 0.00 0.00 43.62 4.17
2121 2516 2.159627 GCAGTTACAATGCTACGCAACT 59.840 45.455 0.00 0.00 43.62 3.16
2122 2517 3.736213 CAGTTACAATGCTACGCAACTG 58.264 45.455 4.00 4.00 43.62 3.16
2123 2518 3.186409 CAGTTACAATGCTACGCAACTGT 59.814 43.478 8.63 9.55 43.62 3.55
2124 2519 3.432252 AGTTACAATGCTACGCAACTGTC 59.568 43.478 9.34 0.11 43.62 3.51
2125 2520 2.169832 ACAATGCTACGCAACTGTCT 57.830 45.000 0.00 0.00 43.62 3.41
2126 2521 1.800586 ACAATGCTACGCAACTGTCTG 59.199 47.619 0.00 0.00 43.62 3.51
2127 2522 0.798776 AATGCTACGCAACTGTCTGC 59.201 50.000 0.00 5.31 43.62 4.26
2128 2523 0.036952 ATGCTACGCAACTGTCTGCT 60.037 50.000 11.29 4.12 43.62 4.24
2129 2524 0.249868 TGCTACGCAACTGTCTGCTT 60.250 50.000 11.29 6.39 40.33 3.91
2130 2525 0.868406 GCTACGCAACTGTCTGCTTT 59.132 50.000 11.29 3.72 40.33 3.51
2131 2526 1.136224 GCTACGCAACTGTCTGCTTTC 60.136 52.381 11.29 0.00 40.33 2.62
2132 2527 1.461127 CTACGCAACTGTCTGCTTTCC 59.539 52.381 11.29 0.00 40.33 3.13
2254 2652 2.515854 TGGTCTTAGCTCGAGACTGTT 58.484 47.619 18.75 0.00 42.44 3.16
2329 2803 7.392766 TGTGGATATTCTGGTCCATTCTATT 57.607 36.000 0.00 0.00 45.57 1.73
2330 2804 8.504811 TGTGGATATTCTGGTCCATTCTATTA 57.495 34.615 0.00 0.00 45.57 0.98
2331 2805 8.944138 TGTGGATATTCTGGTCCATTCTATTAA 58.056 33.333 0.00 0.00 45.57 1.40
2332 2806 9.220767 GTGGATATTCTGGTCCATTCTATTAAC 57.779 37.037 0.00 0.00 45.57 2.01
2333 2807 9.170890 TGGATATTCTGGTCCATTCTATTAACT 57.829 33.333 0.00 0.00 39.51 2.24
2378 2852 3.484547 CGTCAACGGCGGGCTTAC 61.485 66.667 13.24 0.77 35.37 2.34
2379 2853 3.484547 GTCAACGGCGGGCTTACG 61.485 66.667 13.24 0.00 0.00 3.18
2390 2864 3.178539 GCTTACGCCTGCCTGAAC 58.821 61.111 0.00 0.00 0.00 3.18
2391 2865 2.399356 GCTTACGCCTGCCTGAACC 61.399 63.158 0.00 0.00 0.00 3.62
2392 2866 1.296715 CTTACGCCTGCCTGAACCT 59.703 57.895 0.00 0.00 0.00 3.50
2393 2867 0.321653 CTTACGCCTGCCTGAACCTT 60.322 55.000 0.00 0.00 0.00 3.50
2394 2868 0.109723 TTACGCCTGCCTGAACCTTT 59.890 50.000 0.00 0.00 0.00 3.11
2395 2869 0.978151 TACGCCTGCCTGAACCTTTA 59.022 50.000 0.00 0.00 0.00 1.85
2396 2870 0.328258 ACGCCTGCCTGAACCTTTAT 59.672 50.000 0.00 0.00 0.00 1.40
2397 2871 1.271926 ACGCCTGCCTGAACCTTTATT 60.272 47.619 0.00 0.00 0.00 1.40
2398 2872 1.133025 CGCCTGCCTGAACCTTTATTG 59.867 52.381 0.00 0.00 0.00 1.90
2399 2873 1.134995 GCCTGCCTGAACCTTTATTGC 60.135 52.381 0.00 0.00 0.00 3.56
2400 2874 1.133025 CCTGCCTGAACCTTTATTGCG 59.867 52.381 0.00 0.00 0.00 4.85
2401 2875 2.083774 CTGCCTGAACCTTTATTGCGA 58.916 47.619 0.00 0.00 0.00 5.10
2402 2876 2.684881 CTGCCTGAACCTTTATTGCGAT 59.315 45.455 0.00 0.00 0.00 4.58
2403 2877 2.682856 TGCCTGAACCTTTATTGCGATC 59.317 45.455 0.00 0.00 0.00 3.69
2404 2878 2.286418 GCCTGAACCTTTATTGCGATCG 60.286 50.000 11.69 11.69 0.00 3.69
2405 2879 2.936498 CCTGAACCTTTATTGCGATCGT 59.064 45.455 17.81 0.00 0.00 3.73
2406 2880 3.242413 CCTGAACCTTTATTGCGATCGTG 60.242 47.826 17.81 0.00 0.00 4.35
2407 2881 3.591023 TGAACCTTTATTGCGATCGTGA 58.409 40.909 17.81 5.98 0.00 4.35
2408 2882 3.997681 TGAACCTTTATTGCGATCGTGAA 59.002 39.130 17.81 10.41 0.00 3.18
2409 2883 4.092821 TGAACCTTTATTGCGATCGTGAAG 59.907 41.667 17.81 9.11 0.00 3.02
2410 2884 2.936498 ACCTTTATTGCGATCGTGAAGG 59.064 45.455 19.77 19.77 38.45 3.46
2411 2885 2.936498 CCTTTATTGCGATCGTGAAGGT 59.064 45.455 17.81 0.25 0.00 3.50
2412 2886 3.242413 CCTTTATTGCGATCGTGAAGGTG 60.242 47.826 17.81 3.14 0.00 4.00
2413 2887 2.665649 TATTGCGATCGTGAAGGTGT 57.334 45.000 17.81 0.00 0.00 4.16
2414 2888 1.808411 ATTGCGATCGTGAAGGTGTT 58.192 45.000 17.81 0.00 0.00 3.32
2415 2889 2.442212 TTGCGATCGTGAAGGTGTTA 57.558 45.000 17.81 0.00 0.00 2.41
2416 2890 1.705256 TGCGATCGTGAAGGTGTTAC 58.295 50.000 17.81 0.00 0.00 2.50
2417 2891 1.000052 TGCGATCGTGAAGGTGTTACA 60.000 47.619 17.81 0.00 0.00 2.41
2418 2892 2.063266 GCGATCGTGAAGGTGTTACAA 58.937 47.619 17.81 0.00 0.00 2.41
2419 2893 2.477375 GCGATCGTGAAGGTGTTACAAA 59.523 45.455 17.81 0.00 0.00 2.83
2420 2894 3.423123 GCGATCGTGAAGGTGTTACAAAG 60.423 47.826 17.81 0.00 0.00 2.77
2421 2895 3.739300 CGATCGTGAAGGTGTTACAAAGT 59.261 43.478 7.03 0.00 0.00 2.66
2422 2896 4.376008 CGATCGTGAAGGTGTTACAAAGTG 60.376 45.833 7.03 0.00 0.00 3.16
2423 2897 2.610374 TCGTGAAGGTGTTACAAAGTGC 59.390 45.455 0.00 0.00 0.00 4.40
2424 2898 2.612212 CGTGAAGGTGTTACAAAGTGCT 59.388 45.455 0.00 0.00 0.00 4.40
2425 2899 3.303132 CGTGAAGGTGTTACAAAGTGCTC 60.303 47.826 0.00 0.00 0.00 4.26
2426 2900 3.625764 GTGAAGGTGTTACAAAGTGCTCA 59.374 43.478 0.00 0.00 0.00 4.26
2427 2901 3.876914 TGAAGGTGTTACAAAGTGCTCAG 59.123 43.478 0.00 0.00 0.00 3.35
2428 2902 2.222027 AGGTGTTACAAAGTGCTCAGC 58.778 47.619 0.00 0.00 0.00 4.26
2429 2903 1.946768 GGTGTTACAAAGTGCTCAGCA 59.053 47.619 0.00 0.00 35.60 4.41
2430 2904 2.554032 GGTGTTACAAAGTGCTCAGCAT 59.446 45.455 0.54 0.00 41.91 3.79
2431 2905 3.365364 GGTGTTACAAAGTGCTCAGCATC 60.365 47.826 0.54 0.00 41.91 3.91
2432 2906 3.250762 GTGTTACAAAGTGCTCAGCATCA 59.749 43.478 0.54 0.00 41.91 3.07
2433 2907 3.499537 TGTTACAAAGTGCTCAGCATCAG 59.500 43.478 0.54 0.00 41.91 2.90
2434 2908 2.556144 ACAAAGTGCTCAGCATCAGA 57.444 45.000 0.54 0.00 41.91 3.27
2435 2909 2.854963 ACAAAGTGCTCAGCATCAGAA 58.145 42.857 0.54 0.00 41.91 3.02
2436 2910 2.812591 ACAAAGTGCTCAGCATCAGAAG 59.187 45.455 0.54 0.00 41.91 2.85
2437 2911 2.812591 CAAAGTGCTCAGCATCAGAAGT 59.187 45.455 0.54 0.00 41.91 3.01
2438 2912 3.969287 AAGTGCTCAGCATCAGAAGTA 57.031 42.857 0.54 0.00 41.91 2.24
2439 2913 3.244033 AGTGCTCAGCATCAGAAGTAC 57.756 47.619 0.54 0.00 41.91 2.73
2440 2914 2.564504 AGTGCTCAGCATCAGAAGTACA 59.435 45.455 0.54 0.00 41.91 2.90
2441 2915 3.197333 AGTGCTCAGCATCAGAAGTACAT 59.803 43.478 0.54 0.00 41.91 2.29
2442 2916 3.309138 GTGCTCAGCATCAGAAGTACATG 59.691 47.826 0.54 0.00 41.91 3.21
2443 2917 2.871022 GCTCAGCATCAGAAGTACATGG 59.129 50.000 0.00 0.00 0.00 3.66
2444 2918 3.464907 CTCAGCATCAGAAGTACATGGG 58.535 50.000 0.00 0.00 0.00 4.00
2445 2919 2.171237 TCAGCATCAGAAGTACATGGGG 59.829 50.000 0.00 0.00 0.00 4.96
2446 2920 2.092753 CAGCATCAGAAGTACATGGGGT 60.093 50.000 0.00 0.00 0.00 4.95
2447 2921 2.171448 AGCATCAGAAGTACATGGGGTC 59.829 50.000 0.00 0.00 0.00 4.46
2448 2922 2.092968 GCATCAGAAGTACATGGGGTCA 60.093 50.000 0.00 0.00 0.00 4.02
2449 2923 3.801698 CATCAGAAGTACATGGGGTCAG 58.198 50.000 0.00 0.00 0.00 3.51
2450 2924 3.184382 TCAGAAGTACATGGGGTCAGA 57.816 47.619 0.00 0.00 0.00 3.27
2451 2925 3.099905 TCAGAAGTACATGGGGTCAGAG 58.900 50.000 0.00 0.00 0.00 3.35
2452 2926 2.169352 CAGAAGTACATGGGGTCAGAGG 59.831 54.545 0.00 0.00 0.00 3.69
2453 2927 1.486726 GAAGTACATGGGGTCAGAGGG 59.513 57.143 0.00 0.00 0.00 4.30
2454 2928 0.716591 AGTACATGGGGTCAGAGGGA 59.283 55.000 0.00 0.00 0.00 4.20
2455 2929 1.123928 GTACATGGGGTCAGAGGGAG 58.876 60.000 0.00 0.00 0.00 4.30
2456 2930 1.015609 TACATGGGGTCAGAGGGAGA 58.984 55.000 0.00 0.00 0.00 3.71
2457 2931 0.326048 ACATGGGGTCAGAGGGAGAG 60.326 60.000 0.00 0.00 0.00 3.20
2458 2932 0.031716 CATGGGGTCAGAGGGAGAGA 60.032 60.000 0.00 0.00 0.00 3.10
2459 2933 0.719015 ATGGGGTCAGAGGGAGAGAA 59.281 55.000 0.00 0.00 0.00 2.87
2460 2934 0.491823 TGGGGTCAGAGGGAGAGAAA 59.508 55.000 0.00 0.00 0.00 2.52
2461 2935 1.132527 TGGGGTCAGAGGGAGAGAAAA 60.133 52.381 0.00 0.00 0.00 2.29
2462 2936 1.985895 GGGGTCAGAGGGAGAGAAAAA 59.014 52.381 0.00 0.00 0.00 1.94
2463 2937 2.290387 GGGGTCAGAGGGAGAGAAAAAC 60.290 54.545 0.00 0.00 0.00 2.43
2464 2938 2.372172 GGGTCAGAGGGAGAGAAAAACA 59.628 50.000 0.00 0.00 0.00 2.83
2465 2939 3.558109 GGGTCAGAGGGAGAGAAAAACAG 60.558 52.174 0.00 0.00 0.00 3.16
2466 2940 3.325135 GGTCAGAGGGAGAGAAAAACAGA 59.675 47.826 0.00 0.00 0.00 3.41
2467 2941 4.562552 GGTCAGAGGGAGAGAAAAACAGAG 60.563 50.000 0.00 0.00 0.00 3.35
2468 2942 4.282195 GTCAGAGGGAGAGAAAAACAGAGA 59.718 45.833 0.00 0.00 0.00 3.10
2469 2943 4.901849 TCAGAGGGAGAGAAAAACAGAGAA 59.098 41.667 0.00 0.00 0.00 2.87
2470 2944 5.366768 TCAGAGGGAGAGAAAAACAGAGAAA 59.633 40.000 0.00 0.00 0.00 2.52
2471 2945 6.058183 CAGAGGGAGAGAAAAACAGAGAAAA 58.942 40.000 0.00 0.00 0.00 2.29
2472 2946 6.204495 CAGAGGGAGAGAAAAACAGAGAAAAG 59.796 42.308 0.00 0.00 0.00 2.27
2473 2947 5.380900 AGGGAGAGAAAAACAGAGAAAAGG 58.619 41.667 0.00 0.00 0.00 3.11
2474 2948 5.103898 AGGGAGAGAAAAACAGAGAAAAGGT 60.104 40.000 0.00 0.00 0.00 3.50
2475 2949 6.101296 AGGGAGAGAAAAACAGAGAAAAGGTA 59.899 38.462 0.00 0.00 0.00 3.08
2476 2950 6.205076 GGGAGAGAAAAACAGAGAAAAGGTAC 59.795 42.308 0.00 0.00 0.00 3.34
2477 2951 6.766467 GGAGAGAAAAACAGAGAAAAGGTACA 59.234 38.462 0.00 0.00 0.00 2.90
2478 2952 7.445707 GGAGAGAAAAACAGAGAAAAGGTACAT 59.554 37.037 0.00 0.00 0.00 2.29
2479 2953 9.490379 GAGAGAAAAACAGAGAAAAGGTACATA 57.510 33.333 0.00 0.00 0.00 2.29
2480 2954 9.495572 AGAGAAAAACAGAGAAAAGGTACATAG 57.504 33.333 0.00 0.00 0.00 2.23
2481 2955 9.274206 GAGAAAAACAGAGAAAAGGTACATAGT 57.726 33.333 0.00 0.00 0.00 2.12
2482 2956 9.057089 AGAAAAACAGAGAAAAGGTACATAGTG 57.943 33.333 0.00 0.00 0.00 2.74
2483 2957 6.803154 AAACAGAGAAAAGGTACATAGTGC 57.197 37.500 0.00 0.00 0.00 4.40
2484 2958 5.746990 ACAGAGAAAAGGTACATAGTGCT 57.253 39.130 0.00 0.00 0.00 4.40
2485 2959 5.482908 ACAGAGAAAAGGTACATAGTGCTG 58.517 41.667 0.00 0.00 0.00 4.41
2486 2960 4.872691 CAGAGAAAAGGTACATAGTGCTGG 59.127 45.833 0.00 0.00 0.00 4.85
2487 2961 4.777896 AGAGAAAAGGTACATAGTGCTGGA 59.222 41.667 0.00 0.00 0.00 3.86
2488 2962 5.091261 AGAAAAGGTACATAGTGCTGGAG 57.909 43.478 0.00 0.00 0.00 3.86
2489 2963 3.914426 AAAGGTACATAGTGCTGGAGG 57.086 47.619 0.00 0.00 0.00 4.30
2490 2964 1.123928 AGGTACATAGTGCTGGAGGC 58.876 55.000 0.00 0.00 42.22 4.70
2491 2965 1.123928 GGTACATAGTGCTGGAGGCT 58.876 55.000 0.00 0.00 42.39 4.58
2492 2966 2.091278 AGGTACATAGTGCTGGAGGCTA 60.091 50.000 0.00 0.00 42.39 3.93
2493 2967 2.036089 GGTACATAGTGCTGGAGGCTAC 59.964 54.545 0.00 0.00 42.39 3.58
2494 2968 1.866015 ACATAGTGCTGGAGGCTACA 58.134 50.000 0.00 0.00 42.39 2.74
2495 2969 2.187958 ACATAGTGCTGGAGGCTACAA 58.812 47.619 0.00 0.00 42.39 2.41
2496 2970 2.774234 ACATAGTGCTGGAGGCTACAAT 59.226 45.455 0.00 0.00 42.39 2.71
2497 2971 3.181461 ACATAGTGCTGGAGGCTACAATC 60.181 47.826 0.00 0.00 42.39 2.67
2498 2972 1.577736 AGTGCTGGAGGCTACAATCT 58.422 50.000 0.00 0.00 42.39 2.40
2499 2973 1.484240 AGTGCTGGAGGCTACAATCTC 59.516 52.381 0.00 0.00 42.39 2.75
2500 2974 0.461548 TGCTGGAGGCTACAATCTCG 59.538 55.000 0.00 0.00 42.39 4.04
2501 2975 0.878086 GCTGGAGGCTACAATCTCGC 60.878 60.000 0.00 0.00 38.06 5.03
2502 2976 0.461548 CTGGAGGCTACAATCTCGCA 59.538 55.000 0.00 0.00 0.00 5.10
2503 2977 0.461548 TGGAGGCTACAATCTCGCAG 59.538 55.000 0.00 0.00 0.00 5.18
2504 2978 0.878086 GGAGGCTACAATCTCGCAGC 60.878 60.000 0.00 0.00 0.00 5.25
2505 2979 0.103937 GAGGCTACAATCTCGCAGCT 59.896 55.000 0.00 0.00 34.41 4.24
2506 2980 1.338337 GAGGCTACAATCTCGCAGCTA 59.662 52.381 0.00 0.00 34.41 3.32
2507 2981 1.757118 AGGCTACAATCTCGCAGCTAA 59.243 47.619 0.00 0.00 34.41 3.09
2508 2982 2.131183 GGCTACAATCTCGCAGCTAAG 58.869 52.381 0.00 0.00 34.41 2.18
2509 2983 2.223829 GGCTACAATCTCGCAGCTAAGA 60.224 50.000 0.00 0.00 34.41 2.10
2510 2984 3.049206 GCTACAATCTCGCAGCTAAGAG 58.951 50.000 10.43 10.43 35.91 2.85
2511 2985 2.593346 ACAATCTCGCAGCTAAGAGG 57.407 50.000 15.09 4.88 35.34 3.69
2512 2986 2.103373 ACAATCTCGCAGCTAAGAGGA 58.897 47.619 15.09 5.44 35.34 3.71
2513 2987 2.497675 ACAATCTCGCAGCTAAGAGGAA 59.502 45.455 15.09 0.97 35.34 3.36
2514 2988 2.863137 CAATCTCGCAGCTAAGAGGAAC 59.137 50.000 15.09 0.00 35.34 3.62
2515 2989 1.545841 TCTCGCAGCTAAGAGGAACA 58.454 50.000 15.09 0.00 35.34 3.18
2516 2990 1.893137 TCTCGCAGCTAAGAGGAACAA 59.107 47.619 15.09 0.00 35.34 2.83
2517 2991 1.996191 CTCGCAGCTAAGAGGAACAAC 59.004 52.381 9.15 0.00 0.00 3.32
2518 2992 0.716108 CGCAGCTAAGAGGAACAACG 59.284 55.000 0.00 0.00 0.00 4.10
2519 2993 1.797025 GCAGCTAAGAGGAACAACGT 58.203 50.000 0.00 0.00 0.00 3.99
2520 2994 1.461127 GCAGCTAAGAGGAACAACGTG 59.539 52.381 0.00 0.00 0.00 4.49
2521 2995 2.069273 CAGCTAAGAGGAACAACGTGG 58.931 52.381 0.00 0.00 0.00 4.94
2522 2996 1.968493 AGCTAAGAGGAACAACGTGGA 59.032 47.619 0.00 0.00 0.00 4.02
2523 2997 2.567615 AGCTAAGAGGAACAACGTGGAT 59.432 45.455 0.00 0.00 0.00 3.41
2524 2998 2.673368 GCTAAGAGGAACAACGTGGATG 59.327 50.000 0.00 0.00 0.00 3.51
2525 2999 1.523758 AAGAGGAACAACGTGGATGC 58.476 50.000 0.00 0.00 0.00 3.91
2526 3000 0.321653 AGAGGAACAACGTGGATGCC 60.322 55.000 0.00 0.00 0.00 4.40
2527 3001 1.303317 AGGAACAACGTGGATGCCC 60.303 57.895 0.00 0.00 0.00 5.36
2528 3002 1.602323 GGAACAACGTGGATGCCCA 60.602 57.895 0.00 0.00 40.95 5.36
2529 3003 1.586154 GGAACAACGTGGATGCCCAG 61.586 60.000 0.00 0.00 44.55 4.45
2530 3004 2.200170 GAACAACGTGGATGCCCAGC 62.200 60.000 0.00 0.00 44.55 4.85
2531 3005 3.443045 CAACGTGGATGCCCAGCC 61.443 66.667 0.00 0.00 44.55 4.85
2532 3006 3.965258 AACGTGGATGCCCAGCCA 61.965 61.111 0.31 0.31 45.85 4.75
2570 3045 4.709397 TGGTCTGATTGTTTTCCTGTTTGT 59.291 37.500 0.00 0.00 0.00 2.83
2615 3091 7.499200 TGAAGTTTAACTATAGGGCAAGGTA 57.501 36.000 4.43 0.00 0.00 3.08
2621 3097 4.828875 ACTATAGGGCAAGGTACTAGGT 57.171 45.455 4.43 0.00 38.49 3.08
2713 3189 9.107177 AGATTAAATATCACACAGAAGCTCAAG 57.893 33.333 0.00 0.00 0.00 3.02
2852 3329 2.856760 ACAGGAGCATAAGAGGGAGA 57.143 50.000 0.00 0.00 0.00 3.71
2884 3361 9.146984 CAACTTAAGCATGACAATGAAATGAAT 57.853 29.630 1.29 0.00 35.67 2.57
2950 3431 4.344102 TGGGAGGTGACATATTACTGTAGC 59.656 45.833 0.00 0.00 0.00 3.58
2976 3457 3.830121 AGCTGGGGATTCAGATCAAATC 58.170 45.455 10.76 10.76 36.93 2.17
3021 3502 2.266554 CTGAAGAGCTAACTTCCGCTG 58.733 52.381 11.51 0.00 43.67 5.18
3186 3667 1.144969 TGCTCTAAACTTGCGTTCCG 58.855 50.000 0.00 0.00 31.66 4.30
3285 3769 3.558931 ATCCAGGATTTGCACGATGTA 57.441 42.857 0.00 0.00 0.00 2.29
3300 3784 4.584874 ACGATGTAATCATGGTGGAACAA 58.415 39.130 0.00 0.00 45.97 2.83
3427 3914 5.277297 GCAGATTTAAACAGTTTTGGGTTGC 60.277 40.000 3.25 6.34 0.00 4.17
3441 3928 1.370051 GTTGCCCGTTCACGCTTTC 60.370 57.895 0.00 0.00 38.18 2.62
3452 3939 0.381801 CACGCTTTCTTGTGCCAGTT 59.618 50.000 0.00 0.00 0.00 3.16
3453 3940 1.601903 CACGCTTTCTTGTGCCAGTTA 59.398 47.619 0.00 0.00 0.00 2.24
3454 3941 2.032799 CACGCTTTCTTGTGCCAGTTAA 59.967 45.455 0.00 0.00 0.00 2.01
3455 3942 2.032924 ACGCTTTCTTGTGCCAGTTAAC 59.967 45.455 0.00 0.00 0.00 2.01
3456 3943 2.604614 CGCTTTCTTGTGCCAGTTAACC 60.605 50.000 0.88 0.00 0.00 2.85
3523 4017 5.369409 TGAGGATTCTCAAGATGAAGCAT 57.631 39.130 0.00 0.00 46.08 3.79
3708 4203 1.798223 CTTCGTCGCCATCAAACTCAA 59.202 47.619 0.00 0.00 0.00 3.02
3713 4208 2.094417 GTCGCCATCAAACTCAAGTAGC 59.906 50.000 0.00 0.00 0.00 3.58
3770 4274 3.931468 CCATATCTCGCCATCAGTGATTC 59.069 47.826 1.86 0.00 33.59 2.52
3880 4450 1.209990 CTGGAATGCAGAGGAGAGCTT 59.790 52.381 0.00 0.00 0.00 3.74
3881 4451 1.632409 TGGAATGCAGAGGAGAGCTTT 59.368 47.619 0.00 0.00 0.00 3.51
3930 4506 3.861276 ACATTCATGGCATTCACTGTG 57.139 42.857 0.00 0.17 0.00 3.66
3931 4507 3.159472 ACATTCATGGCATTCACTGTGT 58.841 40.909 7.79 0.00 0.00 3.72
3936 4512 0.322456 TGGCATTCACTGTGTAGGCC 60.322 55.000 28.57 28.57 40.29 5.19
3971 4547 7.258441 TCATATTTTGAGAACTGGTAGAGACG 58.742 38.462 0.00 0.00 0.00 4.18
3972 4548 5.723672 ATTTTGAGAACTGGTAGAGACGA 57.276 39.130 0.00 0.00 0.00 4.20
3978 4554 1.378250 CTGGTAGAGACGACGGGGT 60.378 63.158 0.00 0.00 0.00 4.95
3981 4557 1.246737 GGTAGAGACGACGGGGTGTT 61.247 60.000 0.00 0.00 0.00 3.32
3993 4569 2.158667 ACGGGGTGTTTTCTGTTCAGAT 60.159 45.455 3.28 0.00 0.00 2.90
3996 4577 4.154195 CGGGGTGTTTTCTGTTCAGATTAG 59.846 45.833 3.28 0.00 0.00 1.73
4001 4582 6.431234 GGTGTTTTCTGTTCAGATTAGATGGT 59.569 38.462 3.28 0.00 0.00 3.55
4002 4583 7.301054 GTGTTTTCTGTTCAGATTAGATGGTG 58.699 38.462 3.28 0.00 0.00 4.17
4003 4584 7.173218 GTGTTTTCTGTTCAGATTAGATGGTGA 59.827 37.037 3.28 0.00 0.00 4.02
4007 4588 7.370905 TCTGTTCAGATTAGATGGTGATGAT 57.629 36.000 0.00 0.00 0.00 2.45
4020 4601 7.229308 AGATGGTGATGATAAATACAGTGCAT 58.771 34.615 0.00 0.00 0.00 3.96
4022 4603 7.728847 TGGTGATGATAAATACAGTGCATAC 57.271 36.000 0.00 0.00 0.00 2.39
4029 4610 8.196802 TGATAAATACAGTGCATACAAGTGAC 57.803 34.615 0.00 0.00 0.00 3.67
4031 4614 6.486253 AAATACAGTGCATACAAGTGACTG 57.514 37.500 0.00 0.00 39.96 3.51
4033 4616 4.600692 ACAGTGCATACAAGTGACTGTA 57.399 40.909 0.00 0.00 44.16 2.74
4034 4617 5.152623 ACAGTGCATACAAGTGACTGTAT 57.847 39.130 0.00 0.00 44.16 2.29
4048 4631 5.656859 AGTGACTGTATATGCTGGAGTACAA 59.343 40.000 0.00 0.00 0.00 2.41
4077 4660 0.911769 TCCATTGACTCCAGCCGATT 59.088 50.000 0.00 0.00 0.00 3.34
4093 4676 1.208052 CGATTTCCTCCTGCCTCTTGA 59.792 52.381 0.00 0.00 0.00 3.02
4096 4679 1.661463 TTCCTCCTGCCTCTTGATGT 58.339 50.000 0.00 0.00 0.00 3.06
4102 4685 1.457346 CTGCCTCTTGATGTGTTCCC 58.543 55.000 0.00 0.00 0.00 3.97
4106 4689 1.630369 CCTCTTGATGTGTTCCCTGGA 59.370 52.381 0.00 0.00 0.00 3.86
4109 4692 2.093500 TCTTGATGTGTTCCCTGGATCG 60.093 50.000 0.00 0.00 0.00 3.69
4173 4831 0.035152 TGGTGCCTACTTCAGCATGG 60.035 55.000 0.00 0.00 41.86 3.66
4174 4832 1.379642 GGTGCCTACTTCAGCATGGC 61.380 60.000 0.00 0.00 41.86 4.40
4222 4880 1.074775 ATCGAACAAGCAGGCCCAA 59.925 52.632 0.00 0.00 0.00 4.12
4226 4884 1.818959 GAACAAGCAGGCCCAATGCA 61.819 55.000 16.94 0.00 46.31 3.96
4232 4890 0.251073 GCAGGCCCAATGCAATTTCT 59.749 50.000 10.43 0.00 43.31 2.52
4401 5059 2.600731 CTCCCCCGCTCTCTCTCT 59.399 66.667 0.00 0.00 0.00 3.10
4403 5061 2.277072 CCCCCGCTCTCTCTCTCA 59.723 66.667 0.00 0.00 0.00 3.27
4405 5063 2.124693 CCCCGCTCTCTCTCTCACC 61.125 68.421 0.00 0.00 0.00 4.02
4407 5065 1.379176 CCGCTCTCTCTCTCACCCA 60.379 63.158 0.00 0.00 0.00 4.51
4428 5087 0.836400 TTCTTCTTCCCCACGCCTCT 60.836 55.000 0.00 0.00 0.00 3.69
4430 5089 2.245438 CTTCTTCCCCACGCCTCTCC 62.245 65.000 0.00 0.00 0.00 3.71
4431 5090 2.685380 CTTCCCCACGCCTCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
4493 5206 3.637273 GTCACAGCCCGAACCCCT 61.637 66.667 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.019656 CAACCTAGAGCAGAGACTGTATATTAT 57.980 37.037 0.00 0.00 33.43 1.28
69 74 5.276461 CTATAGGAGCATAACCACACACA 57.724 43.478 0.00 0.00 0.00 3.72
103 108 1.560505 ACATTGCCCTTTCACATCCC 58.439 50.000 0.00 0.00 0.00 3.85
218 225 8.255206 TGTAAGAAAACAGAGTCTTGTACAAGA 58.745 33.333 30.07 30.07 44.47 3.02
234 241 6.163476 GGACCCCATTTTCATGTAAGAAAAC 58.837 40.000 4.23 0.00 46.63 2.43
243 250 3.008266 AGCTTTTGGACCCCATTTTCATG 59.992 43.478 0.00 0.00 31.53 3.07
260 267 9.612066 TGTAAAATTTTCAATCAAAGGAGCTTT 57.388 25.926 6.72 0.00 33.58 3.51
261 268 9.045223 GTGTAAAATTTTCAATCAAAGGAGCTT 57.955 29.630 6.72 0.00 0.00 3.74
280 288 6.783708 AAGAGGTTTTCATGTGGTGTAAAA 57.216 33.333 0.00 0.00 30.34 1.52
281 289 6.783708 AAAGAGGTTTTCATGTGGTGTAAA 57.216 33.333 0.00 0.00 0.00 2.01
344 357 4.014406 CAGGTGGGTAATAACCTTGGAAC 58.986 47.826 0.00 0.00 44.63 3.62
354 367 8.160765 CACCATACAATATTCAGGTGGGTAATA 58.839 37.037 13.47 0.00 42.04 0.98
373 386 6.988522 ACATTGGTAAAAAGTTCCACCATAC 58.011 36.000 4.53 0.00 40.61 2.39
430 449 8.911247 AACTCTTTGTAGTGAATTTTTGTGAC 57.089 30.769 0.00 0.00 0.00 3.67
456 475 5.220662 CCTGTGCAATGTAACTTATTCGAGG 60.221 44.000 0.00 0.00 0.00 4.63
494 516 4.910195 ACATTCTCCTCAATTGTGTGCTA 58.090 39.130 5.13 0.00 0.00 3.49
511 533 5.544136 AAAACTTGTGCACCAAAACATTC 57.456 34.783 15.69 0.00 31.20 2.67
534 647 7.040617 TCGCCACAAATTTTTACATACACCTAA 60.041 33.333 0.00 0.00 0.00 2.69
587 700 9.290483 CTAAACCTTTCTTGAAACTCTGTTTTC 57.710 33.333 0.00 0.00 36.23 2.29
621 737 6.375945 AAGCAAAATCAATGTTCCAAAACC 57.624 33.333 0.00 0.00 34.28 3.27
633 749 3.868077 CGGGACACAAAAAGCAAAATCAA 59.132 39.130 0.00 0.00 0.00 2.57
642 758 0.875059 GGAGCTCGGGACACAAAAAG 59.125 55.000 7.83 0.00 0.00 2.27
683 800 0.749818 TTTCTGTGGGCGTGCAAAGA 60.750 50.000 0.00 0.00 0.00 2.52
707 824 9.956720 CTGGATGAGCAGTAAATTAAAATAAGG 57.043 33.333 0.00 0.00 0.00 2.69
708 825 9.956720 CCTGGATGAGCAGTAAATTAAAATAAG 57.043 33.333 0.00 0.00 0.00 1.73
725 882 2.435069 AGAACATCTGCTCCTGGATGAG 59.565 50.000 9.47 0.00 41.05 2.90
732 889 1.203523 GACACGAGAACATCTGCTCCT 59.796 52.381 0.00 0.00 0.00 3.69
737 894 1.067283 AGCTGGACACGAGAACATCTG 60.067 52.381 0.00 0.00 0.00 2.90
738 895 1.261480 AGCTGGACACGAGAACATCT 58.739 50.000 0.00 0.00 0.00 2.90
739 896 2.941453 TAGCTGGACACGAGAACATC 57.059 50.000 0.00 0.00 0.00 3.06
740 897 2.497675 ACATAGCTGGACACGAGAACAT 59.502 45.455 0.00 0.00 0.00 2.71
741 898 1.893137 ACATAGCTGGACACGAGAACA 59.107 47.619 0.00 0.00 0.00 3.18
742 899 2.656560 ACATAGCTGGACACGAGAAC 57.343 50.000 0.00 0.00 0.00 3.01
743 900 5.339008 AAATACATAGCTGGACACGAGAA 57.661 39.130 0.00 0.00 0.00 2.87
744 901 5.339008 AAAATACATAGCTGGACACGAGA 57.661 39.130 0.00 0.00 0.00 4.04
838 998 5.338300 CCCAAATGGATTTCTTTTAGGGGTG 60.338 44.000 0.00 0.00 37.39 4.61
880 1040 2.299297 ACACTAACCCCTCTGACGAAAG 59.701 50.000 0.00 0.00 0.00 2.62
948 1115 0.601046 TTGCTCTTGCTCTGGTCGTG 60.601 55.000 0.00 0.00 40.48 4.35
1074 1243 0.039180 TACTGACCTGGGAGAAGCGA 59.961 55.000 0.00 0.00 0.00 4.93
1178 1347 2.034999 TGGCGTTGATCCAACCCC 59.965 61.111 6.58 6.58 41.22 4.95
1181 1350 3.650369 ACGTGGCGTTGATCCAAC 58.350 55.556 0.00 0.00 36.35 3.77
1282 1451 2.034685 TCTCCATCTCGTAGGCATTTCG 59.965 50.000 0.00 0.00 0.00 3.46
1335 1510 1.268234 CGCAAAATGCTCTCGATTCCC 60.268 52.381 0.43 0.00 42.25 3.97
1362 1537 0.548510 GGAAGGGAAGCTGCTACCAT 59.451 55.000 20.92 12.10 0.00 3.55
1419 1613 3.062763 CTCGGCATAACCAATCAGCTAG 58.937 50.000 0.00 0.00 39.03 3.42
1549 1743 7.521871 AGGAATTGAAATAGCATCTCAATCC 57.478 36.000 4.47 7.17 38.52 3.01
1590 1790 1.611851 AGTCTCTCCTGCCCCACAG 60.612 63.158 0.00 0.00 46.77 3.66
1591 1791 1.915266 CAGTCTCTCCTGCCCCACA 60.915 63.158 0.00 0.00 0.00 4.17
1592 1792 0.980231 ATCAGTCTCTCCTGCCCCAC 60.980 60.000 0.00 0.00 32.32 4.61
1593 1793 0.252881 AATCAGTCTCTCCTGCCCCA 60.253 55.000 0.00 0.00 32.32 4.96
1616 1837 3.255149 AGTTCTGGAAGCAGCAGAATTTG 59.745 43.478 0.00 0.00 37.31 2.32
1619 1840 2.039480 TGAGTTCTGGAAGCAGCAGAAT 59.961 45.455 0.00 0.00 37.31 2.40
1754 1977 6.064717 GCATCTTTATACCCCTGTTCAGAAT 58.935 40.000 1.00 0.00 0.00 2.40
1790 2013 2.027745 CAGCTCACTCTTAAAGCCTGGA 60.028 50.000 0.00 0.00 36.69 3.86
1951 2337 4.807304 GCAAGCAATGGAAATTATCACCTG 59.193 41.667 0.00 0.00 0.00 4.00
2118 2513 1.133668 AGCCTTGGAAAGCAGACAGTT 60.134 47.619 0.00 0.00 44.44 3.16
2119 2514 0.475906 AGCCTTGGAAAGCAGACAGT 59.524 50.000 0.00 0.00 44.44 3.55
2120 2515 0.879765 CAGCCTTGGAAAGCAGACAG 59.120 55.000 0.00 0.00 44.44 3.51
2121 2516 3.025924 CAGCCTTGGAAAGCAGACA 57.974 52.632 0.00 0.00 44.44 3.41
2193 2589 4.586884 TCTACATCCACTAGTTGACGACT 58.413 43.478 0.00 0.00 42.55 4.18
2254 2652 3.876914 CTCACAAGTGTAAAGGACAGCAA 59.123 43.478 0.00 0.00 39.29 3.91
2361 2835 3.484547 GTAAGCCCGCCGTTGACG 61.485 66.667 0.00 0.00 39.44 4.35
2362 2836 3.484547 CGTAAGCCCGCCGTTGAC 61.485 66.667 0.00 0.00 0.00 3.18
2374 2848 0.321653 AAGGTTCAGGCAGGCGTAAG 60.322 55.000 0.00 0.00 43.44 2.34
2375 2849 0.109723 AAAGGTTCAGGCAGGCGTAA 59.890 50.000 0.00 0.00 0.00 3.18
2376 2850 0.978151 TAAAGGTTCAGGCAGGCGTA 59.022 50.000 0.00 0.00 0.00 4.42
2377 2851 0.328258 ATAAAGGTTCAGGCAGGCGT 59.672 50.000 0.00 0.00 0.00 5.68
2378 2852 1.133025 CAATAAAGGTTCAGGCAGGCG 59.867 52.381 0.00 0.00 0.00 5.52
2379 2853 1.134995 GCAATAAAGGTTCAGGCAGGC 60.135 52.381 0.00 0.00 0.00 4.85
2380 2854 1.133025 CGCAATAAAGGTTCAGGCAGG 59.867 52.381 0.00 0.00 0.00 4.85
2381 2855 2.083774 TCGCAATAAAGGTTCAGGCAG 58.916 47.619 0.00 0.00 0.00 4.85
2382 2856 2.192664 TCGCAATAAAGGTTCAGGCA 57.807 45.000 0.00 0.00 0.00 4.75
2383 2857 2.286418 CGATCGCAATAAAGGTTCAGGC 60.286 50.000 0.26 0.00 0.00 4.85
2384 2858 2.936498 ACGATCGCAATAAAGGTTCAGG 59.064 45.455 16.60 0.00 0.00 3.86
2385 2859 3.616821 TCACGATCGCAATAAAGGTTCAG 59.383 43.478 16.60 0.00 0.00 3.02
2386 2860 3.591023 TCACGATCGCAATAAAGGTTCA 58.409 40.909 16.60 0.00 0.00 3.18
2387 2861 4.494199 CCTTCACGATCGCAATAAAGGTTC 60.494 45.833 16.60 0.00 0.00 3.62
2388 2862 3.374058 CCTTCACGATCGCAATAAAGGTT 59.626 43.478 16.60 0.00 0.00 3.50
2389 2863 2.936498 CCTTCACGATCGCAATAAAGGT 59.064 45.455 16.60 0.00 0.00 3.50
2390 2864 2.936498 ACCTTCACGATCGCAATAAAGG 59.064 45.455 16.60 20.49 38.19 3.11
2391 2865 3.370978 ACACCTTCACGATCGCAATAAAG 59.629 43.478 16.60 11.12 0.00 1.85
2392 2866 3.331150 ACACCTTCACGATCGCAATAAA 58.669 40.909 16.60 1.69 0.00 1.40
2393 2867 2.967362 ACACCTTCACGATCGCAATAA 58.033 42.857 16.60 3.50 0.00 1.40
2394 2868 2.665649 ACACCTTCACGATCGCAATA 57.334 45.000 16.60 0.00 0.00 1.90
2395 2869 1.808411 AACACCTTCACGATCGCAAT 58.192 45.000 16.60 0.00 0.00 3.56
2396 2870 2.063266 GTAACACCTTCACGATCGCAA 58.937 47.619 16.60 7.49 0.00 4.85
2397 2871 1.000052 TGTAACACCTTCACGATCGCA 60.000 47.619 16.60 0.00 0.00 5.10
2398 2872 1.705256 TGTAACACCTTCACGATCGC 58.295 50.000 16.60 0.00 0.00 4.58
2399 2873 3.739300 ACTTTGTAACACCTTCACGATCG 59.261 43.478 14.88 14.88 0.00 3.69
2400 2874 4.610680 GCACTTTGTAACACCTTCACGATC 60.611 45.833 0.00 0.00 0.00 3.69
2401 2875 3.250040 GCACTTTGTAACACCTTCACGAT 59.750 43.478 0.00 0.00 0.00 3.73
2402 2876 2.610374 GCACTTTGTAACACCTTCACGA 59.390 45.455 0.00 0.00 0.00 4.35
2403 2877 2.612212 AGCACTTTGTAACACCTTCACG 59.388 45.455 0.00 0.00 0.00 4.35
2404 2878 3.625764 TGAGCACTTTGTAACACCTTCAC 59.374 43.478 0.00 0.00 0.00 3.18
2405 2879 3.876914 CTGAGCACTTTGTAACACCTTCA 59.123 43.478 0.00 0.00 0.00 3.02
2406 2880 3.304057 GCTGAGCACTTTGTAACACCTTC 60.304 47.826 0.00 0.00 0.00 3.46
2407 2881 2.618709 GCTGAGCACTTTGTAACACCTT 59.381 45.455 0.00 0.00 0.00 3.50
2408 2882 2.222027 GCTGAGCACTTTGTAACACCT 58.778 47.619 0.00 0.00 0.00 4.00
2409 2883 1.946768 TGCTGAGCACTTTGTAACACC 59.053 47.619 1.40 0.00 31.71 4.16
2410 2884 3.250762 TGATGCTGAGCACTTTGTAACAC 59.749 43.478 10.33 0.00 43.04 3.32
2411 2885 3.475575 TGATGCTGAGCACTTTGTAACA 58.524 40.909 10.33 0.00 43.04 2.41
2412 2886 3.748048 TCTGATGCTGAGCACTTTGTAAC 59.252 43.478 10.33 0.00 43.04 2.50
2413 2887 4.006780 TCTGATGCTGAGCACTTTGTAA 57.993 40.909 10.33 0.00 43.04 2.41
2414 2888 3.683365 TCTGATGCTGAGCACTTTGTA 57.317 42.857 10.33 0.00 43.04 2.41
2415 2889 2.556144 TCTGATGCTGAGCACTTTGT 57.444 45.000 10.33 0.00 43.04 2.83
2416 2890 2.812591 ACTTCTGATGCTGAGCACTTTG 59.187 45.455 10.33 0.34 43.04 2.77
2417 2891 3.137446 ACTTCTGATGCTGAGCACTTT 57.863 42.857 10.33 0.00 43.04 2.66
2418 2892 2.855209 ACTTCTGATGCTGAGCACTT 57.145 45.000 10.33 0.00 43.04 3.16
2419 2893 2.564504 TGTACTTCTGATGCTGAGCACT 59.435 45.455 10.33 0.00 43.04 4.40
2420 2894 2.964740 TGTACTTCTGATGCTGAGCAC 58.035 47.619 10.33 4.56 43.04 4.40
2421 2895 3.528532 CATGTACTTCTGATGCTGAGCA 58.471 45.455 10.59 10.59 44.86 4.26
2422 2896 2.871022 CCATGTACTTCTGATGCTGAGC 59.129 50.000 0.00 0.00 0.00 4.26
2423 2897 3.464907 CCCATGTACTTCTGATGCTGAG 58.535 50.000 0.00 0.00 0.00 3.35
2424 2898 2.171237 CCCCATGTACTTCTGATGCTGA 59.829 50.000 0.00 0.00 0.00 4.26
2425 2899 2.092753 ACCCCATGTACTTCTGATGCTG 60.093 50.000 0.00 0.00 0.00 4.41
2426 2900 2.171448 GACCCCATGTACTTCTGATGCT 59.829 50.000 0.00 0.00 0.00 3.79
2427 2901 2.092968 TGACCCCATGTACTTCTGATGC 60.093 50.000 0.00 0.00 0.00 3.91
2428 2902 3.452264 TCTGACCCCATGTACTTCTGATG 59.548 47.826 0.00 0.00 0.00 3.07
2429 2903 3.708631 CTCTGACCCCATGTACTTCTGAT 59.291 47.826 0.00 0.00 0.00 2.90
2430 2904 3.099905 CTCTGACCCCATGTACTTCTGA 58.900 50.000 0.00 0.00 0.00 3.27
2431 2905 2.169352 CCTCTGACCCCATGTACTTCTG 59.831 54.545 0.00 0.00 0.00 3.02
2432 2906 2.472029 CCTCTGACCCCATGTACTTCT 58.528 52.381 0.00 0.00 0.00 2.85
2433 2907 1.486726 CCCTCTGACCCCATGTACTTC 59.513 57.143 0.00 0.00 0.00 3.01
2434 2908 1.080498 TCCCTCTGACCCCATGTACTT 59.920 52.381 0.00 0.00 0.00 2.24
2435 2909 0.716591 TCCCTCTGACCCCATGTACT 59.283 55.000 0.00 0.00 0.00 2.73
2436 2910 1.123928 CTCCCTCTGACCCCATGTAC 58.876 60.000 0.00 0.00 0.00 2.90
2437 2911 1.015609 TCTCCCTCTGACCCCATGTA 58.984 55.000 0.00 0.00 0.00 2.29
2438 2912 0.326048 CTCTCCCTCTGACCCCATGT 60.326 60.000 0.00 0.00 0.00 3.21
2439 2913 0.031716 TCTCTCCCTCTGACCCCATG 60.032 60.000 0.00 0.00 0.00 3.66
2440 2914 0.719015 TTCTCTCCCTCTGACCCCAT 59.281 55.000 0.00 0.00 0.00 4.00
2441 2915 0.491823 TTTCTCTCCCTCTGACCCCA 59.508 55.000 0.00 0.00 0.00 4.96
2442 2916 1.657804 TTTTCTCTCCCTCTGACCCC 58.342 55.000 0.00 0.00 0.00 4.95
2443 2917 2.372172 TGTTTTTCTCTCCCTCTGACCC 59.628 50.000 0.00 0.00 0.00 4.46
2444 2918 3.325135 TCTGTTTTTCTCTCCCTCTGACC 59.675 47.826 0.00 0.00 0.00 4.02
2445 2919 4.282195 TCTCTGTTTTTCTCTCCCTCTGAC 59.718 45.833 0.00 0.00 0.00 3.51
2446 2920 4.483950 TCTCTGTTTTTCTCTCCCTCTGA 58.516 43.478 0.00 0.00 0.00 3.27
2447 2921 4.881019 TCTCTGTTTTTCTCTCCCTCTG 57.119 45.455 0.00 0.00 0.00 3.35
2448 2922 5.896073 TTTCTCTGTTTTTCTCTCCCTCT 57.104 39.130 0.00 0.00 0.00 3.69
2449 2923 5.471797 CCTTTTCTCTGTTTTTCTCTCCCTC 59.528 44.000 0.00 0.00 0.00 4.30
2450 2924 5.103898 ACCTTTTCTCTGTTTTTCTCTCCCT 60.104 40.000 0.00 0.00 0.00 4.20
2451 2925 5.133941 ACCTTTTCTCTGTTTTTCTCTCCC 58.866 41.667 0.00 0.00 0.00 4.30
2452 2926 6.766467 TGTACCTTTTCTCTGTTTTTCTCTCC 59.234 38.462 0.00 0.00 0.00 3.71
2453 2927 7.787725 TGTACCTTTTCTCTGTTTTTCTCTC 57.212 36.000 0.00 0.00 0.00 3.20
2454 2928 9.495572 CTATGTACCTTTTCTCTGTTTTTCTCT 57.504 33.333 0.00 0.00 0.00 3.10
2455 2929 9.274206 ACTATGTACCTTTTCTCTGTTTTTCTC 57.726 33.333 0.00 0.00 0.00 2.87
2456 2930 9.057089 CACTATGTACCTTTTCTCTGTTTTTCT 57.943 33.333 0.00 0.00 0.00 2.52
2457 2931 7.803659 GCACTATGTACCTTTTCTCTGTTTTTC 59.196 37.037 0.00 0.00 0.00 2.29
2458 2932 7.502561 AGCACTATGTACCTTTTCTCTGTTTTT 59.497 33.333 0.00 0.00 0.00 1.94
2459 2933 6.998673 AGCACTATGTACCTTTTCTCTGTTTT 59.001 34.615 0.00 0.00 0.00 2.43
2460 2934 6.428159 CAGCACTATGTACCTTTTCTCTGTTT 59.572 38.462 0.00 0.00 0.00 2.83
2461 2935 5.934625 CAGCACTATGTACCTTTTCTCTGTT 59.065 40.000 0.00 0.00 0.00 3.16
2462 2936 5.482908 CAGCACTATGTACCTTTTCTCTGT 58.517 41.667 0.00 0.00 0.00 3.41
2463 2937 4.872691 CCAGCACTATGTACCTTTTCTCTG 59.127 45.833 0.00 0.00 0.00 3.35
2464 2938 4.777896 TCCAGCACTATGTACCTTTTCTCT 59.222 41.667 0.00 0.00 0.00 3.10
2465 2939 5.086104 TCCAGCACTATGTACCTTTTCTC 57.914 43.478 0.00 0.00 0.00 2.87
2466 2940 4.080863 CCTCCAGCACTATGTACCTTTTCT 60.081 45.833 0.00 0.00 0.00 2.52
2467 2941 4.192317 CCTCCAGCACTATGTACCTTTTC 58.808 47.826 0.00 0.00 0.00 2.29
2468 2942 3.622455 GCCTCCAGCACTATGTACCTTTT 60.622 47.826 0.00 0.00 42.97 2.27
2469 2943 2.092914 GCCTCCAGCACTATGTACCTTT 60.093 50.000 0.00 0.00 42.97 3.11
2470 2944 1.486726 GCCTCCAGCACTATGTACCTT 59.513 52.381 0.00 0.00 42.97 3.50
2471 2945 1.123928 GCCTCCAGCACTATGTACCT 58.876 55.000 0.00 0.00 42.97 3.08
2472 2946 3.688553 GCCTCCAGCACTATGTACC 57.311 57.895 0.00 0.00 42.97 3.34
2482 2956 0.878086 GCGAGATTGTAGCCTCCAGC 60.878 60.000 0.00 0.00 44.25 4.85
2483 2957 0.461548 TGCGAGATTGTAGCCTCCAG 59.538 55.000 0.00 0.00 0.00 3.86
2484 2958 0.461548 CTGCGAGATTGTAGCCTCCA 59.538 55.000 0.00 0.00 0.00 3.86
2485 2959 0.878086 GCTGCGAGATTGTAGCCTCC 60.878 60.000 0.00 0.00 41.12 4.30
2486 2960 2.599216 GCTGCGAGATTGTAGCCTC 58.401 57.895 0.00 0.00 41.12 4.70
2487 2961 4.844420 GCTGCGAGATTGTAGCCT 57.156 55.556 0.00 0.00 41.12 4.58
2489 2963 3.049206 CTCTTAGCTGCGAGATTGTAGC 58.951 50.000 8.02 2.20 46.43 3.58
2490 2964 3.316588 TCCTCTTAGCTGCGAGATTGTAG 59.683 47.826 13.76 0.00 0.00 2.74
2491 2965 3.288092 TCCTCTTAGCTGCGAGATTGTA 58.712 45.455 13.76 0.00 0.00 2.41
2492 2966 2.103373 TCCTCTTAGCTGCGAGATTGT 58.897 47.619 13.76 0.00 0.00 2.71
2493 2967 2.863137 GTTCCTCTTAGCTGCGAGATTG 59.137 50.000 13.76 4.94 0.00 2.67
2494 2968 2.497675 TGTTCCTCTTAGCTGCGAGATT 59.502 45.455 13.76 0.00 0.00 2.40
2495 2969 2.103373 TGTTCCTCTTAGCTGCGAGAT 58.897 47.619 13.76 0.00 0.00 2.75
2496 2970 1.545841 TGTTCCTCTTAGCTGCGAGA 58.454 50.000 13.76 6.60 0.00 4.04
2497 2971 1.996191 GTTGTTCCTCTTAGCTGCGAG 59.004 52.381 0.00 1.39 0.00 5.03
2498 2972 1.668919 CGTTGTTCCTCTTAGCTGCGA 60.669 52.381 0.00 0.00 0.00 5.10
2499 2973 0.716108 CGTTGTTCCTCTTAGCTGCG 59.284 55.000 0.00 0.00 0.00 5.18
2500 2974 1.461127 CACGTTGTTCCTCTTAGCTGC 59.539 52.381 0.00 0.00 0.00 5.25
2501 2975 2.069273 CCACGTTGTTCCTCTTAGCTG 58.931 52.381 0.00 0.00 0.00 4.24
2502 2976 1.968493 TCCACGTTGTTCCTCTTAGCT 59.032 47.619 0.00 0.00 0.00 3.32
2503 2977 2.450609 TCCACGTTGTTCCTCTTAGC 57.549 50.000 0.00 0.00 0.00 3.09
2504 2978 2.673368 GCATCCACGTTGTTCCTCTTAG 59.327 50.000 0.00 0.00 0.00 2.18
2505 2979 2.614481 GGCATCCACGTTGTTCCTCTTA 60.614 50.000 0.00 0.00 0.00 2.10
2506 2980 1.523758 GCATCCACGTTGTTCCTCTT 58.476 50.000 0.00 0.00 0.00 2.85
2507 2981 0.321653 GGCATCCACGTTGTTCCTCT 60.322 55.000 0.00 0.00 0.00 3.69
2508 2982 1.305930 GGGCATCCACGTTGTTCCTC 61.306 60.000 0.00 0.00 0.00 3.71
2509 2983 1.303317 GGGCATCCACGTTGTTCCT 60.303 57.895 0.00 0.00 0.00 3.36
2510 2984 1.586154 CTGGGCATCCACGTTGTTCC 61.586 60.000 0.00 0.00 38.32 3.62
2511 2985 1.875963 CTGGGCATCCACGTTGTTC 59.124 57.895 0.00 0.00 38.32 3.18
2512 2986 2.268076 GCTGGGCATCCACGTTGTT 61.268 57.895 0.00 0.00 38.32 2.83
2513 2987 2.672996 GCTGGGCATCCACGTTGT 60.673 61.111 0.00 0.00 38.32 3.32
2514 2988 3.443045 GGCTGGGCATCCACGTTG 61.443 66.667 0.00 0.00 38.32 4.10
2515 2989 3.965258 TGGCTGGGCATCCACGTT 61.965 61.111 0.00 0.00 38.32 3.99
2516 2990 4.722700 GTGGCTGGGCATCCACGT 62.723 66.667 0.00 0.00 42.67 4.49
2518 2992 3.918253 TTCGTGGCTGGGCATCCAC 62.918 63.158 10.73 10.73 46.95 4.02
2519 2993 2.497792 AATTCGTGGCTGGGCATCCA 62.498 55.000 0.00 0.00 41.58 3.41
2520 2994 1.754234 AATTCGTGGCTGGGCATCC 60.754 57.895 0.00 0.00 0.00 3.51
2521 2995 1.315257 ACAATTCGTGGCTGGGCATC 61.315 55.000 0.00 0.00 0.00 3.91
2522 2996 0.034574 TACAATTCGTGGCTGGGCAT 60.035 50.000 0.00 0.00 0.00 4.40
2523 2997 0.958382 GTACAATTCGTGGCTGGGCA 60.958 55.000 0.00 0.00 0.00 5.36
2524 2998 0.958382 TGTACAATTCGTGGCTGGGC 60.958 55.000 0.00 0.00 0.00 5.36
2525 2999 1.529226 TTGTACAATTCGTGGCTGGG 58.471 50.000 3.59 0.00 0.00 4.45
2526 3000 3.848272 AATTGTACAATTCGTGGCTGG 57.152 42.857 24.88 0.00 36.34 4.85
2527 3001 3.919804 CCAAATTGTACAATTCGTGGCTG 59.080 43.478 29.10 22.08 39.88 4.85
2528 3002 3.572255 ACCAAATTGTACAATTCGTGGCT 59.428 39.130 33.04 23.61 40.09 4.75
2529 3003 3.908213 ACCAAATTGTACAATTCGTGGC 58.092 40.909 33.04 0.00 40.09 5.01
2530 3004 5.049060 TCAGACCAAATTGTACAATTCGTGG 60.049 40.000 32.20 32.20 41.26 4.94
2531 3005 5.996219 TCAGACCAAATTGTACAATTCGTG 58.004 37.500 29.10 23.84 39.88 4.35
2532 3006 6.817765 ATCAGACCAAATTGTACAATTCGT 57.182 33.333 29.10 26.07 39.88 3.85
2533 3007 7.083858 ACAATCAGACCAAATTGTACAATTCG 58.916 34.615 29.10 23.66 42.67 3.34
2621 3097 9.842775 TGGGCATGATTTTATTGCATATTAAAA 57.157 25.926 0.00 10.38 38.12 1.52
2713 3189 6.127869 GCTTTTCCTAATTCTTCCTTCAGACC 60.128 42.308 0.00 0.00 0.00 3.85
2852 3329 5.940192 TTGTCATGCTTAAGTTGTTCGAT 57.060 34.783 4.02 0.00 0.00 3.59
2884 3361 1.679977 GCTCTCCAGGGCATTGCAA 60.680 57.895 11.39 0.00 0.00 4.08
2950 3431 0.826715 TCTGAATCCCCAGCTTCTCG 59.173 55.000 0.00 0.00 34.28 4.04
2976 3457 7.536895 TTTTCACAAAACAATCAACAGGATG 57.463 32.000 0.00 0.00 46.00 3.51
3021 3502 1.285023 CAAGAGCACAGCTGGTTGC 59.715 57.895 19.93 19.35 39.88 4.17
3053 3534 4.523943 AGTTGTTTTATTGCAGCCTCATCA 59.476 37.500 0.00 0.00 0.00 3.07
3285 3769 3.588842 TCTCCTCTTGTTCCACCATGATT 59.411 43.478 0.00 0.00 0.00 2.57
3300 3784 0.241481 GCGTGTCGTCTTTCTCCTCT 59.759 55.000 0.00 0.00 0.00 3.69
3427 3914 0.041312 CACAAGAAAGCGTGAACGGG 60.041 55.000 4.84 0.00 40.23 5.28
3441 3928 3.252458 GTGGTTAGGTTAACTGGCACAAG 59.748 47.826 5.42 0.00 38.70 3.16
3452 3939 4.101898 TGCTGTCAAGAAGTGGTTAGGTTA 59.898 41.667 0.00 0.00 0.00 2.85
3453 3940 3.118038 TGCTGTCAAGAAGTGGTTAGGTT 60.118 43.478 0.00 0.00 0.00 3.50
3454 3941 2.438021 TGCTGTCAAGAAGTGGTTAGGT 59.562 45.455 0.00 0.00 0.00 3.08
3455 3942 3.126001 TGCTGTCAAGAAGTGGTTAGG 57.874 47.619 0.00 0.00 0.00 2.69
3456 3943 5.695851 AATTGCTGTCAAGAAGTGGTTAG 57.304 39.130 0.00 0.00 35.37 2.34
3511 4005 1.743394 TGCTCTGCATGCTTCATCTTG 59.257 47.619 20.33 1.88 31.71 3.02
3523 4017 1.601759 GTCCCTTTGCTGCTCTGCA 60.602 57.895 0.00 0.00 41.65 4.41
3669 4163 3.110178 GTTCGGAACCTGACGGCG 61.110 66.667 4.80 4.80 0.00 6.46
3708 4203 1.512735 GATTGGGGAGGGAAGCTACT 58.487 55.000 0.00 0.00 0.00 2.57
3713 4208 1.001140 ATGGGGATTGGGGAGGGAAG 61.001 60.000 0.00 0.00 0.00 3.46
3807 4316 3.140325 ACTGTGTAACCCCTGATTGTG 57.860 47.619 0.00 0.00 34.36 3.33
3936 4512 6.376581 AGTTCTCAAAATATGAAGGGCAAGAG 59.623 38.462 0.00 0.00 37.67 2.85
3946 4522 7.122204 TCGTCTCTACCAGTTCTCAAAATATGA 59.878 37.037 0.00 0.00 36.38 2.15
3953 4529 2.483106 CGTCGTCTCTACCAGTTCTCAA 59.517 50.000 0.00 0.00 0.00 3.02
3971 4547 1.602377 CTGAACAGAAAACACCCCGTC 59.398 52.381 0.00 0.00 0.00 4.79
3972 4548 1.210967 TCTGAACAGAAAACACCCCGT 59.789 47.619 1.79 0.00 33.91 5.28
3978 4554 7.223584 TCACCATCTAATCTGAACAGAAAACA 58.776 34.615 8.59 0.00 41.36 2.83
3981 4557 7.623630 TCATCACCATCTAATCTGAACAGAAA 58.376 34.615 8.59 0.22 41.36 2.52
3993 4569 8.210265 TGCACTGTATTTATCATCACCATCTAA 58.790 33.333 0.00 0.00 0.00 2.10
3996 4577 6.866010 TGCACTGTATTTATCATCACCATC 57.134 37.500 0.00 0.00 0.00 3.51
4001 4582 8.829612 CACTTGTATGCACTGTATTTATCATCA 58.170 33.333 0.00 0.00 0.00 3.07
4002 4583 9.045223 TCACTTGTATGCACTGTATTTATCATC 57.955 33.333 0.00 0.00 0.00 2.92
4003 4584 8.830580 GTCACTTGTATGCACTGTATTTATCAT 58.169 33.333 0.00 0.00 0.00 2.45
4007 4588 7.158697 ACAGTCACTTGTATGCACTGTATTTA 58.841 34.615 1.20 0.00 44.60 1.40
4017 4598 5.178252 CCAGCATATACAGTCACTTGTATGC 59.822 44.000 14.05 14.05 42.59 3.14
4020 4601 5.656859 ACTCCAGCATATACAGTCACTTGTA 59.343 40.000 0.00 0.00 37.89 2.41
4022 4603 5.016051 ACTCCAGCATATACAGTCACTTG 57.984 43.478 0.00 0.00 0.00 3.16
4029 4610 4.386954 CGCATTGTACTCCAGCATATACAG 59.613 45.833 0.00 0.00 0.00 2.74
4031 4614 4.556233 TCGCATTGTACTCCAGCATATAC 58.444 43.478 0.00 0.00 0.00 1.47
4033 4616 3.751479 TCGCATTGTACTCCAGCATAT 57.249 42.857 0.00 0.00 0.00 1.78
4034 4617 3.554960 GGATCGCATTGTACTCCAGCATA 60.555 47.826 0.00 0.00 0.00 3.14
4048 4631 1.071385 GAGTCAATGGAGGGATCGCAT 59.929 52.381 12.83 0.00 0.00 4.73
4077 4660 1.280133 CACATCAAGAGGCAGGAGGAA 59.720 52.381 0.00 0.00 0.00 3.36
4093 4676 1.224592 GCCGATCCAGGGAACACAT 59.775 57.895 0.00 0.00 0.00 3.21
4096 4679 1.259142 TAACGCCGATCCAGGGAACA 61.259 55.000 0.00 0.00 0.00 3.18
4102 4685 0.603707 ATGCCATAACGCCGATCCAG 60.604 55.000 0.00 0.00 0.00 3.86
4106 4689 1.667830 CGGATGCCATAACGCCGAT 60.668 57.895 0.00 0.00 44.43 4.18
4109 4692 1.933853 GATATCGGATGCCATAACGCC 59.066 52.381 0.00 0.00 0.00 5.68
4173 4831 1.007387 CAGGGCAAAACGAACCAGC 60.007 57.895 0.00 0.00 0.00 4.85
4174 4832 0.030638 CACAGGGCAAAACGAACCAG 59.969 55.000 0.00 0.00 0.00 4.00
4209 4867 1.196104 ATTGCATTGGGCCTGCTTGT 61.196 50.000 17.48 2.58 43.89 3.16
4211 4869 0.694196 AAATTGCATTGGGCCTGCTT 59.306 45.000 17.48 3.30 43.89 3.91
4401 5059 1.064825 GGGGAAGAAGAAGTGGGTGA 58.935 55.000 0.00 0.00 0.00 4.02
4403 5061 0.771755 GTGGGGAAGAAGAAGTGGGT 59.228 55.000 0.00 0.00 0.00 4.51
4405 5063 0.955919 GCGTGGGGAAGAAGAAGTGG 60.956 60.000 0.00 0.00 0.00 4.00
4407 5065 1.128188 AGGCGTGGGGAAGAAGAAGT 61.128 55.000 0.00 0.00 0.00 3.01
4428 5087 1.614241 GGTTTAGCAGGCGGAGAGGA 61.614 60.000 0.00 0.00 0.00 3.71
4430 5089 0.179097 GAGGTTTAGCAGGCGGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
4431 5090 1.898154 GAGGTTTAGCAGGCGGAGA 59.102 57.895 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.