Multiple sequence alignment - TraesCS6A01G118500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G118500 chr6A 100.000 3891 0 0 1 3891 89591811 89595701 0.000000e+00 7186
1 TraesCS6A01G118500 chr6A 94.253 261 15 0 7 267 514037585 514037325 2.180000e-107 399
2 TraesCS6A01G118500 chr6D 97.057 2786 58 9 374 3140 73067830 73070610 0.000000e+00 4669
3 TraesCS6A01G118500 chr6D 96.992 665 14 3 3228 3891 73070633 73071292 0.000000e+00 1112
4 TraesCS6A01G118500 chr6D 93.916 263 16 0 7 269 114949498 114949236 7.830000e-107 398
5 TraesCS6A01G118500 chr6D 82.133 375 60 6 1080 1448 192631053 192630680 8.120000e-82 315
6 TraesCS6A01G118500 chr6D 100.000 56 0 0 264 319 73067775 73067830 1.910000e-18 104
7 TraesCS6A01G118500 chr6B 97.608 2634 57 4 264 2895 147581614 147584243 0.000000e+00 4510
8 TraesCS6A01G118500 chr6B 96.557 668 14 4 3228 3891 147584566 147585228 0.000000e+00 1098
9 TraesCS6A01G118500 chr6B 96.040 303 12 0 2838 3140 147584241 147584543 9.710000e-136 494
10 TraesCS6A01G118500 chr5A 83.513 558 79 12 1036 1583 55328550 55329104 3.470000e-140 508
11 TraesCS6A01G118500 chr2A 83.513 558 79 12 1036 1583 461726643 461727197 3.470000e-140 508
12 TraesCS6A01G118500 chr2A 92.989 271 18 1 2 272 625011944 625011675 1.010000e-105 394
13 TraesCS6A01G118500 chr7A 83.333 558 80 12 1036 1583 332925892 332926446 1.610000e-138 503
14 TraesCS6A01G118500 chr7A 95.094 265 13 0 3 267 578444758 578444494 6.010000e-113 418
15 TraesCS6A01G118500 chr7A 95.402 261 12 0 7 267 527996822 527996562 2.160000e-112 416
16 TraesCS6A01G118500 chr4A 94.636 261 14 0 7 267 62950252 62950512 4.680000e-109 405
17 TraesCS6A01G118500 chr4A 93.309 269 17 1 2 270 574544940 574544673 2.820000e-106 396
18 TraesCS6A01G118500 chr4A 94.624 93 5 0 3138 3230 637866233 637866141 1.130000e-30 145
19 TraesCS6A01G118500 chr4A 91.176 102 9 0 3140 3241 42254271 42254372 5.240000e-29 139
20 TraesCS6A01G118500 chr3D 94.636 261 14 0 7 267 91831627 91831887 4.680000e-109 405
21 TraesCS6A01G118500 chr3D 89.908 109 9 2 3132 3239 76376683 76376790 5.240000e-29 139
22 TraesCS6A01G118500 chr1A 93.939 264 16 0 4 267 147365692 147365955 2.180000e-107 399
23 TraesCS6A01G118500 chr1B 81.684 475 74 5 1080 1542 511483908 511484381 2.190000e-102 383
24 TraesCS6A01G118500 chr7D 85.276 163 21 3 1435 1596 370399865 370399705 8.650000e-37 165
25 TraesCS6A01G118500 chr3A 93.750 96 6 0 3132 3227 729669319 729669414 1.130000e-30 145
26 TraesCS6A01G118500 chr7B 93.750 96 4 2 3134 3228 157808006 157808100 4.050000e-30 143
27 TraesCS6A01G118500 chr7B 92.079 101 6 2 3132 3231 689651847 689651748 1.460000e-29 141
28 TraesCS6A01G118500 chr4B 92.857 98 5 2 3132 3228 44252002 44252098 1.460000e-29 141
29 TraesCS6A01G118500 chr4B 92.000 100 8 0 3140 3239 392446784 392446883 1.460000e-29 141
30 TraesCS6A01G118500 chr4B 92.857 98 5 2 3132 3228 508232177 508232081 1.460000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G118500 chr6A 89591811 89595701 3890 False 7186.000000 7186 100.000000 1 3891 1 chr6A.!!$F1 3890
1 TraesCS6A01G118500 chr6D 73067775 73071292 3517 False 1961.666667 4669 98.016333 264 3891 3 chr6D.!!$F1 3627
2 TraesCS6A01G118500 chr6B 147581614 147585228 3614 False 2034.000000 4510 96.735000 264 3891 3 chr6B.!!$F1 3627
3 TraesCS6A01G118500 chr5A 55328550 55329104 554 False 508.000000 508 83.513000 1036 1583 1 chr5A.!!$F1 547
4 TraesCS6A01G118500 chr2A 461726643 461727197 554 False 508.000000 508 83.513000 1036 1583 1 chr2A.!!$F1 547
5 TraesCS6A01G118500 chr7A 332925892 332926446 554 False 503.000000 503 83.333000 1036 1583 1 chr7A.!!$F1 547

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.034767 CCCTCCGGTCCTTTTTACCC 60.035 60.0 0.00 0.00 33.1 3.69 F
720 731 0.035152 ATGCTCCGCTGGAATTCACA 60.035 50.0 7.93 2.28 0.0 3.58 F
2026 2046 2.346766 TTGGTGTGCATTGTGAGAGT 57.653 45.0 0.00 0.00 0.0 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1073 1084 1.340991 GCCCAACAGAATAGCTCCCAA 60.341 52.381 0.0 0.0 0.0 4.12 R
2705 2732 1.632920 TGCACTTACCACATCCCATCA 59.367 47.619 0.0 0.0 0.0 3.07 R
3209 3293 0.033781 CGTACACCCTCCGTTCCAAA 59.966 55.000 0.0 0.0 0.0 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.128681 GCATAGTACTCCCTCCGGT 57.871 57.895 0.00 0.00 0.00 5.28
19 20 0.960286 GCATAGTACTCCCTCCGGTC 59.040 60.000 0.00 0.00 0.00 4.79
20 21 1.618487 CATAGTACTCCCTCCGGTCC 58.382 60.000 0.00 0.00 0.00 4.46
21 22 1.145325 CATAGTACTCCCTCCGGTCCT 59.855 57.143 0.00 0.00 0.00 3.85
22 23 1.302907 TAGTACTCCCTCCGGTCCTT 58.697 55.000 0.00 0.00 0.00 3.36
23 24 0.412640 AGTACTCCCTCCGGTCCTTT 59.587 55.000 0.00 0.00 0.00 3.11
24 25 1.203275 AGTACTCCCTCCGGTCCTTTT 60.203 52.381 0.00 0.00 0.00 2.27
25 26 1.627329 GTACTCCCTCCGGTCCTTTTT 59.373 52.381 0.00 0.00 0.00 1.94
26 27 2.034436 ACTCCCTCCGGTCCTTTTTA 57.966 50.000 0.00 0.00 0.00 1.52
27 28 1.627329 ACTCCCTCCGGTCCTTTTTAC 59.373 52.381 0.00 0.00 0.00 2.01
28 29 0.986527 TCCCTCCGGTCCTTTTTACC 59.013 55.000 0.00 0.00 0.00 2.85
29 30 0.034767 CCCTCCGGTCCTTTTTACCC 60.035 60.000 0.00 0.00 33.10 3.69
30 31 0.989602 CCTCCGGTCCTTTTTACCCT 59.010 55.000 0.00 0.00 33.10 4.34
31 32 1.339727 CCTCCGGTCCTTTTTACCCTG 60.340 57.143 0.00 0.00 33.10 4.45
32 33 0.037160 TCCGGTCCTTTTTACCCTGC 59.963 55.000 0.00 0.00 33.10 4.85
33 34 0.250989 CCGGTCCTTTTTACCCTGCA 60.251 55.000 0.00 0.00 33.10 4.41
34 35 1.615919 CCGGTCCTTTTTACCCTGCAT 60.616 52.381 0.00 0.00 33.10 3.96
35 36 2.356330 CCGGTCCTTTTTACCCTGCATA 60.356 50.000 0.00 0.00 33.10 3.14
36 37 3.551846 CGGTCCTTTTTACCCTGCATAT 58.448 45.455 0.00 0.00 33.10 1.78
37 38 4.445162 CCGGTCCTTTTTACCCTGCATATA 60.445 45.833 0.00 0.00 33.10 0.86
38 39 5.127491 CGGTCCTTTTTACCCTGCATATAA 58.873 41.667 0.00 0.00 33.10 0.98
39 40 5.238650 CGGTCCTTTTTACCCTGCATATAAG 59.761 44.000 0.00 0.00 33.10 1.73
40 41 6.362248 GGTCCTTTTTACCCTGCATATAAGA 58.638 40.000 0.00 0.00 0.00 2.10
41 42 6.831868 GGTCCTTTTTACCCTGCATATAAGAA 59.168 38.462 0.00 0.00 0.00 2.52
42 43 7.505923 GGTCCTTTTTACCCTGCATATAAGAAT 59.494 37.037 0.00 0.00 0.00 2.40
43 44 8.914011 GTCCTTTTTACCCTGCATATAAGAATT 58.086 33.333 0.00 0.00 0.00 2.17
44 45 8.912988 TCCTTTTTACCCTGCATATAAGAATTG 58.087 33.333 0.00 0.00 0.00 2.32
45 46 8.695456 CCTTTTTACCCTGCATATAAGAATTGT 58.305 33.333 0.00 0.00 0.00 2.71
46 47 9.736023 CTTTTTACCCTGCATATAAGAATTGTC 57.264 33.333 0.00 0.00 0.00 3.18
47 48 9.474313 TTTTTACCCTGCATATAAGAATTGTCT 57.526 29.630 0.00 0.00 34.72 3.41
48 49 8.450578 TTTACCCTGCATATAAGAATTGTCTG 57.549 34.615 0.00 0.00 33.05 3.51
49 50 6.252599 ACCCTGCATATAAGAATTGTCTGA 57.747 37.500 0.00 0.00 33.05 3.27
50 51 6.662755 ACCCTGCATATAAGAATTGTCTGAA 58.337 36.000 0.00 0.00 33.05 3.02
51 52 6.769822 ACCCTGCATATAAGAATTGTCTGAAG 59.230 38.462 0.00 0.00 33.05 3.02
52 53 6.769822 CCCTGCATATAAGAATTGTCTGAAGT 59.230 38.462 0.00 0.00 33.05 3.01
53 54 7.041508 CCCTGCATATAAGAATTGTCTGAAGTC 60.042 40.741 0.00 0.00 33.05 3.01
54 55 7.496920 CCTGCATATAAGAATTGTCTGAAGTCA 59.503 37.037 0.00 0.00 33.05 3.41
55 56 8.791327 TGCATATAAGAATTGTCTGAAGTCAA 57.209 30.769 0.00 0.00 33.05 3.18
56 57 9.230122 TGCATATAAGAATTGTCTGAAGTCAAA 57.770 29.630 0.00 0.00 33.05 2.69
57 58 9.495754 GCATATAAGAATTGTCTGAAGTCAAAC 57.504 33.333 0.00 0.00 33.05 2.93
143 144 7.138736 ACCATTTGAAAACTAAAGTCATGACG 58.861 34.615 19.85 8.45 36.20 4.35
144 145 6.088085 CCATTTGAAAACTAAAGTCATGACGC 59.912 38.462 19.85 0.00 36.20 5.19
145 146 5.743026 TTGAAAACTAAAGTCATGACGCA 57.257 34.783 19.85 8.35 36.20 5.24
146 147 5.940192 TGAAAACTAAAGTCATGACGCAT 57.060 34.783 19.85 12.36 36.20 4.73
147 148 5.927030 TGAAAACTAAAGTCATGACGCATC 58.073 37.500 19.85 11.06 36.20 3.91
148 149 5.700832 TGAAAACTAAAGTCATGACGCATCT 59.299 36.000 19.85 6.79 36.20 2.90
149 150 6.871492 TGAAAACTAAAGTCATGACGCATCTA 59.129 34.615 19.85 7.52 36.20 1.98
150 151 7.386573 TGAAAACTAAAGTCATGACGCATCTAA 59.613 33.333 19.85 2.63 36.20 2.10
151 152 7.849804 AAACTAAAGTCATGACGCATCTAAT 57.150 32.000 19.85 2.37 36.20 1.73
152 153 6.834959 ACTAAAGTCATGACGCATCTAATG 57.165 37.500 19.85 7.39 36.20 1.90
153 154 6.341316 ACTAAAGTCATGACGCATCTAATGT 58.659 36.000 19.85 7.94 36.20 2.71
154 155 6.818644 ACTAAAGTCATGACGCATCTAATGTT 59.181 34.615 19.85 2.19 36.20 2.71
155 156 5.475273 AAGTCATGACGCATCTAATGTTG 57.525 39.130 19.85 0.00 36.20 3.33
156 157 4.507710 AGTCATGACGCATCTAATGTTGT 58.492 39.130 19.85 0.00 36.20 3.32
157 158 4.937620 AGTCATGACGCATCTAATGTTGTT 59.062 37.500 19.85 0.00 36.20 2.83
158 159 5.023920 GTCATGACGCATCTAATGTTGTTG 58.976 41.667 10.69 0.00 0.00 3.33
159 160 4.934602 TCATGACGCATCTAATGTTGTTGA 59.065 37.500 0.00 0.00 0.00 3.18
160 161 5.585844 TCATGACGCATCTAATGTTGTTGAT 59.414 36.000 0.00 0.00 0.00 2.57
161 162 5.878332 TGACGCATCTAATGTTGTTGATT 57.122 34.783 0.00 0.00 0.00 2.57
162 163 6.252967 TGACGCATCTAATGTTGTTGATTT 57.747 33.333 0.00 0.00 0.00 2.17
163 164 6.314018 TGACGCATCTAATGTTGTTGATTTC 58.686 36.000 0.00 0.00 0.00 2.17
164 165 6.072783 TGACGCATCTAATGTTGTTGATTTCA 60.073 34.615 0.00 0.00 0.00 2.69
165 166 6.086222 ACGCATCTAATGTTGTTGATTTCAC 58.914 36.000 0.00 0.00 0.00 3.18
166 167 6.085573 CGCATCTAATGTTGTTGATTTCACA 58.914 36.000 0.00 0.00 0.00 3.58
167 168 6.748658 CGCATCTAATGTTGTTGATTTCACAT 59.251 34.615 0.00 0.00 0.00 3.21
168 169 7.274033 CGCATCTAATGTTGTTGATTTCACATT 59.726 33.333 0.00 0.00 0.00 2.71
169 170 8.589629 GCATCTAATGTTGTTGATTTCACATTC 58.410 33.333 0.00 0.00 0.00 2.67
170 171 9.850628 CATCTAATGTTGTTGATTTCACATTCT 57.149 29.630 0.00 0.00 0.00 2.40
171 172 9.850628 ATCTAATGTTGTTGATTTCACATTCTG 57.149 29.630 0.00 0.00 0.00 3.02
172 173 9.065798 TCTAATGTTGTTGATTTCACATTCTGA 57.934 29.630 0.00 0.00 0.00 3.27
173 174 9.681692 CTAATGTTGTTGATTTCACATTCTGAA 57.318 29.630 0.00 0.00 37.08 3.02
175 176 7.933728 TGTTGTTGATTTCACATTCTGAATG 57.066 32.000 24.79 24.79 44.48 2.67
217 218 4.625972 CTTGGTCAAAGTTTACGTGGTT 57.374 40.909 0.00 0.00 0.00 3.67
218 219 4.989044 CTTGGTCAAAGTTTACGTGGTTT 58.011 39.130 0.00 0.00 0.00 3.27
219 220 4.358494 TGGTCAAAGTTTACGTGGTTTG 57.642 40.909 0.00 2.96 0.00 2.93
220 221 4.008330 TGGTCAAAGTTTACGTGGTTTGA 58.992 39.130 0.00 5.39 36.74 2.69
223 224 5.883503 TCAAAGTTTACGTGGTTTGACTT 57.116 34.783 0.00 0.00 34.72 3.01
224 225 5.871539 TCAAAGTTTACGTGGTTTGACTTC 58.128 37.500 0.00 0.00 34.72 3.01
225 226 5.411977 TCAAAGTTTACGTGGTTTGACTTCA 59.588 36.000 0.00 0.00 34.72 3.02
226 227 5.883503 AAGTTTACGTGGTTTGACTTCAA 57.116 34.783 0.00 0.00 0.00 2.69
227 228 5.883503 AGTTTACGTGGTTTGACTTCAAA 57.116 34.783 0.00 0.07 42.90 2.69
261 262 4.004196 ACGAACTAAAAAGGACCAGAGG 57.996 45.455 0.00 0.00 0.00 3.69
262 263 3.244457 ACGAACTAAAAAGGACCAGAGGG 60.244 47.826 0.00 0.00 41.29 4.30
337 338 3.046968 TGCACTTACCGCAGAAATGTA 57.953 42.857 0.00 0.00 33.55 2.29
446 447 4.261801 TGGAAATGAGGCTTGTACTAAGC 58.738 43.478 16.84 16.84 42.30 3.09
460 461 3.059352 ACTAAGCTTCCACCATGTCAC 57.941 47.619 0.00 0.00 0.00 3.67
496 497 6.097915 TCGTCTCCTTTATTCTTGTTCACT 57.902 37.500 0.00 0.00 0.00 3.41
566 567 6.410942 AACGAATCTCAGATGACCATGATA 57.589 37.500 0.00 0.00 0.00 2.15
720 731 0.035152 ATGCTCCGCTGGAATTCACA 60.035 50.000 7.93 2.28 0.00 3.58
912 923 8.526147 CAGAACAGATTCACTTCCCAAAATAAT 58.474 33.333 0.00 0.00 37.29 1.28
925 936 7.789202 TCCCAAAATAATGAGTTGGAATCAA 57.211 32.000 3.24 0.00 43.82 2.57
933 944 8.905660 ATAATGAGTTGGAATCAATGAGAGAG 57.094 34.615 0.00 0.00 35.10 3.20
1073 1084 3.731431 TGACTGGTATGGGTTCTGGTAT 58.269 45.455 0.00 0.00 0.00 2.73
1936 1956 8.738106 AGTACTAATGAACTACTAACCACTGAC 58.262 37.037 0.00 0.00 0.00 3.51
2026 2046 2.346766 TTGGTGTGCATTGTGAGAGT 57.653 45.000 0.00 0.00 0.00 3.24
2181 2201 4.145052 AGGACCAAAATGGAAGAGTTGTC 58.855 43.478 2.85 0.00 40.96 3.18
2293 2313 2.627945 TCTATAAACTTGCCTGGCACG 58.372 47.619 23.30 22.62 38.71 5.34
2406 2433 7.328493 GGTTTTGTTTATTCATAGTCACTTGCC 59.672 37.037 0.00 0.00 0.00 4.52
2548 2575 8.991783 ACAAACCATTAGATGATGAAGATGAT 57.008 30.769 0.00 0.00 0.00 2.45
2584 2611 6.587608 ACAAAATCTTGCATGCTAACTTTAGC 59.412 34.615 20.33 13.15 44.67 3.09
2705 2732 6.773200 TCACTCGACCTATATCAGACAGAATT 59.227 38.462 0.00 0.00 0.00 2.17
2708 2735 7.450014 ACTCGACCTATATCAGACAGAATTGAT 59.550 37.037 0.00 0.00 37.73 2.57
2760 2789 5.712152 ATTGAGTTGATTGAAGGTGTTCC 57.288 39.130 0.00 0.00 0.00 3.62
2988 3072 2.843912 ATAGCCTTGCCGCCTTGCTT 62.844 55.000 3.37 0.00 33.63 3.91
3003 3087 1.363807 GCTTTGTGTGGACCTTGGC 59.636 57.895 0.00 0.00 0.00 4.52
3032 3116 4.865925 GTGGTGCGTATAGTGAAACATGTA 59.134 41.667 0.00 0.00 41.43 2.29
3039 3123 9.320352 TGCGTATAGTGAAACATGTATTATGTT 57.680 29.630 0.00 0.00 43.35 2.71
3049 3133 8.564648 AAACATGTATTATGTTCATCATTGCG 57.435 30.769 0.00 0.00 40.94 4.85
3054 3138 7.209475 TGTATTATGTTCATCATTGCGAGAGA 58.791 34.615 0.00 0.00 37.91 3.10
3068 3152 6.851222 TTGCGAGAGATTTCCTTCATTATC 57.149 37.500 0.00 0.00 0.00 1.75
3143 3227 8.981724 TGAGTTGTGTTCATCTTATGTACTAC 57.018 34.615 0.00 0.00 32.55 2.73
3144 3228 8.803235 TGAGTTGTGTTCATCTTATGTACTACT 58.197 33.333 0.00 0.00 33.25 2.57
3145 3229 9.291664 GAGTTGTGTTCATCTTATGTACTACTC 57.708 37.037 0.00 0.00 36.58 2.59
3146 3230 8.251721 AGTTGTGTTCATCTTATGTACTACTCC 58.748 37.037 0.00 0.00 32.55 3.85
3149 3233 7.068348 TGTGTTCATCTTATGTACTACTCCCTC 59.932 40.741 0.00 0.00 32.55 4.30
3150 3234 6.550108 TGTTCATCTTATGTACTACTCCCTCC 59.450 42.308 0.00 0.00 32.55 4.30
3151 3235 5.314529 TCATCTTATGTACTACTCCCTCCG 58.685 45.833 0.00 0.00 0.00 4.63
3152 3236 4.785346 TCTTATGTACTACTCCCTCCGT 57.215 45.455 0.00 0.00 0.00 4.69
3153 3237 5.121380 TCTTATGTACTACTCCCTCCGTT 57.879 43.478 0.00 0.00 0.00 4.44
3154 3238 5.128919 TCTTATGTACTACTCCCTCCGTTC 58.871 45.833 0.00 0.00 0.00 3.95
3156 3240 1.355381 TGTACTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53
3157 3241 2.225091 TGTACTACTCCCTCCGTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
3158 3242 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3161 3245 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3162 3246 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3163 3247 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3164 3248 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3165 3249 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3166 3250 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3167 3251 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3168 3252 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3169 3253 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3170 3254 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3171 3255 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3172 3256 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3173 3257 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
3174 3258 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3175 3259 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3176 3260 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
3177 3261 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
3178 3262 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3179 3263 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
3180 3264 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
3213 3297 9.125026 AGTATAAAGTTGAGCCATCTATTTTGG 57.875 33.333 0.00 0.00 37.31 3.28
3214 3298 9.120538 GTATAAAGTTGAGCCATCTATTTTGGA 57.879 33.333 0.00 0.00 36.26 3.53
3215 3299 6.916360 AAAGTTGAGCCATCTATTTTGGAA 57.084 33.333 0.00 0.00 36.26 3.53
3216 3300 5.904362 AGTTGAGCCATCTATTTTGGAAC 57.096 39.130 0.00 0.00 36.26 3.62
3217 3301 4.396166 AGTTGAGCCATCTATTTTGGAACG 59.604 41.667 0.00 0.00 36.26 3.95
3218 3302 3.278574 TGAGCCATCTATTTTGGAACGG 58.721 45.455 0.00 0.00 36.26 4.44
3219 3303 3.054728 TGAGCCATCTATTTTGGAACGGA 60.055 43.478 0.00 0.00 36.26 4.69
3220 3304 3.545703 AGCCATCTATTTTGGAACGGAG 58.454 45.455 0.00 0.00 36.26 4.63
3221 3305 2.618709 GCCATCTATTTTGGAACGGAGG 59.381 50.000 0.00 0.00 36.26 4.30
3222 3306 3.214328 CCATCTATTTTGGAACGGAGGG 58.786 50.000 0.00 0.00 36.26 4.30
3223 3307 3.371595 CCATCTATTTTGGAACGGAGGGT 60.372 47.826 0.00 0.00 36.26 4.34
3224 3308 3.343941 TCTATTTTGGAACGGAGGGTG 57.656 47.619 0.00 0.00 0.00 4.61
3225 3309 2.640826 TCTATTTTGGAACGGAGGGTGT 59.359 45.455 0.00 0.00 0.00 4.16
3226 3310 3.839490 TCTATTTTGGAACGGAGGGTGTA 59.161 43.478 0.00 0.00 0.00 2.90
3336 3420 2.758423 ACTGTTGGGACCTGTGTTTTTC 59.242 45.455 0.00 0.00 0.00 2.29
3352 3436 6.183361 TGTGTTTTTCCCCAGTCATCTAACTA 60.183 38.462 0.00 0.00 0.00 2.24
3405 3489 1.767681 GATGGATCTCCTTGGTGAGCT 59.232 52.381 6.88 0.00 36.82 4.09
3559 3644 4.034285 TGTGAATCTTCCCCTTTCTTCC 57.966 45.455 0.00 0.00 0.00 3.46
3625 3710 0.171903 ACCGACGGTACCGATGAAAG 59.828 55.000 39.52 21.95 42.83 2.62
3847 3935 2.378886 CCCCTCTTAAAAGTTGACCCCT 59.621 50.000 0.00 0.00 0.00 4.79
3858 3946 9.816787 TTAAAAGTTGACCCCTTGTATTCTTAT 57.183 29.630 0.00 0.00 0.00 1.73
3862 3950 9.990868 AAGTTGACCCCTTGTATTCTTATAAAT 57.009 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.949079 GCAGGGTAAAAAGGACCGGAG 60.949 57.143 9.46 0.00 37.90 4.63
13 14 0.037160 GCAGGGTAAAAAGGACCGGA 59.963 55.000 9.46 0.00 37.90 5.14
14 15 0.250989 TGCAGGGTAAAAAGGACCGG 60.251 55.000 0.00 0.00 37.90 5.28
15 16 1.834188 ATGCAGGGTAAAAAGGACCG 58.166 50.000 0.00 0.00 37.90 4.79
16 17 6.362248 TCTTATATGCAGGGTAAAAAGGACC 58.638 40.000 0.00 0.00 36.12 4.46
17 18 7.875327 TTCTTATATGCAGGGTAAAAAGGAC 57.125 36.000 0.00 0.00 0.00 3.85
18 19 8.912988 CAATTCTTATATGCAGGGTAAAAAGGA 58.087 33.333 0.00 0.00 0.00 3.36
19 20 8.695456 ACAATTCTTATATGCAGGGTAAAAAGG 58.305 33.333 0.00 0.00 0.00 3.11
20 21 9.736023 GACAATTCTTATATGCAGGGTAAAAAG 57.264 33.333 0.00 0.00 0.00 2.27
21 22 9.474313 AGACAATTCTTATATGCAGGGTAAAAA 57.526 29.630 0.00 0.00 0.00 1.94
22 23 8.902806 CAGACAATTCTTATATGCAGGGTAAAA 58.097 33.333 0.00 0.00 0.00 1.52
23 24 8.271458 TCAGACAATTCTTATATGCAGGGTAAA 58.729 33.333 0.00 0.00 0.00 2.01
24 25 7.801104 TCAGACAATTCTTATATGCAGGGTAA 58.199 34.615 0.00 0.00 0.00 2.85
25 26 7.373617 TCAGACAATTCTTATATGCAGGGTA 57.626 36.000 0.00 0.00 0.00 3.69
26 27 6.252599 TCAGACAATTCTTATATGCAGGGT 57.747 37.500 0.00 0.00 0.00 4.34
27 28 6.769822 ACTTCAGACAATTCTTATATGCAGGG 59.230 38.462 0.00 0.00 0.00 4.45
28 29 7.496920 TGACTTCAGACAATTCTTATATGCAGG 59.503 37.037 0.00 0.00 0.00 4.85
29 30 8.429493 TGACTTCAGACAATTCTTATATGCAG 57.571 34.615 0.00 0.00 0.00 4.41
30 31 8.791327 TTGACTTCAGACAATTCTTATATGCA 57.209 30.769 0.00 0.00 0.00 3.96
31 32 9.495754 GTTTGACTTCAGACAATTCTTATATGC 57.504 33.333 0.00 0.00 31.96 3.14
117 118 8.286800 CGTCATGACTTTAGTTTTCAAATGGTA 58.713 33.333 22.95 0.00 0.00 3.25
118 119 7.138736 CGTCATGACTTTAGTTTTCAAATGGT 58.861 34.615 22.95 0.00 0.00 3.55
119 120 6.088085 GCGTCATGACTTTAGTTTTCAAATGG 59.912 38.462 22.95 3.02 0.00 3.16
120 121 6.636447 TGCGTCATGACTTTAGTTTTCAAATG 59.364 34.615 22.95 3.38 0.00 2.32
121 122 6.734137 TGCGTCATGACTTTAGTTTTCAAAT 58.266 32.000 22.95 0.00 0.00 2.32
122 123 6.125327 TGCGTCATGACTTTAGTTTTCAAA 57.875 33.333 22.95 0.00 0.00 2.69
123 124 5.743026 TGCGTCATGACTTTAGTTTTCAA 57.257 34.783 22.95 0.00 0.00 2.69
124 125 5.700832 AGATGCGTCATGACTTTAGTTTTCA 59.299 36.000 22.95 7.45 0.00 2.69
125 126 6.170675 AGATGCGTCATGACTTTAGTTTTC 57.829 37.500 22.95 8.71 0.00 2.29
126 127 7.667043 TTAGATGCGTCATGACTTTAGTTTT 57.333 32.000 22.95 4.61 0.00 2.43
127 128 7.334421 ACATTAGATGCGTCATGACTTTAGTTT 59.666 33.333 22.95 5.95 0.00 2.66
128 129 6.818644 ACATTAGATGCGTCATGACTTTAGTT 59.181 34.615 22.95 7.42 0.00 2.24
129 130 6.341316 ACATTAGATGCGTCATGACTTTAGT 58.659 36.000 22.95 8.00 0.00 2.24
130 131 6.834959 ACATTAGATGCGTCATGACTTTAG 57.165 37.500 22.95 9.02 0.00 1.85
131 132 6.593770 ACAACATTAGATGCGTCATGACTTTA 59.406 34.615 22.95 9.76 0.00 1.85
132 133 5.412594 ACAACATTAGATGCGTCATGACTTT 59.587 36.000 22.95 7.92 0.00 2.66
133 134 4.937620 ACAACATTAGATGCGTCATGACTT 59.062 37.500 22.95 8.27 0.00 3.01
134 135 4.507710 ACAACATTAGATGCGTCATGACT 58.492 39.130 22.95 4.97 0.00 3.41
135 136 4.864916 ACAACATTAGATGCGTCATGAC 57.135 40.909 16.21 16.21 0.00 3.06
136 137 4.934602 TCAACAACATTAGATGCGTCATGA 59.065 37.500 8.99 0.00 0.00 3.07
137 138 5.220557 TCAACAACATTAGATGCGTCATG 57.779 39.130 8.99 6.69 0.00 3.07
138 139 6.441093 AATCAACAACATTAGATGCGTCAT 57.559 33.333 8.99 0.00 0.00 3.06
139 140 5.878332 AATCAACAACATTAGATGCGTCA 57.122 34.783 8.99 0.00 0.00 4.35
140 141 6.249260 GTGAAATCAACAACATTAGATGCGTC 59.751 38.462 0.00 0.00 0.00 5.19
141 142 6.086222 GTGAAATCAACAACATTAGATGCGT 58.914 36.000 0.00 0.00 0.00 5.24
142 143 6.085573 TGTGAAATCAACAACATTAGATGCG 58.914 36.000 0.00 0.00 0.00 4.73
143 144 8.470040 AATGTGAAATCAACAACATTAGATGC 57.530 30.769 0.00 0.00 0.00 3.91
144 145 9.850628 AGAATGTGAAATCAACAACATTAGATG 57.149 29.630 0.23 0.00 0.00 2.90
145 146 9.850628 CAGAATGTGAAATCAACAACATTAGAT 57.149 29.630 0.23 0.00 0.00 1.98
146 147 9.065798 TCAGAATGTGAAATCAACAACATTAGA 57.934 29.630 0.23 0.43 37.40 2.10
147 148 9.681692 TTCAGAATGTGAAATCAACAACATTAG 57.318 29.630 0.23 0.00 42.49 1.73
196 197 4.625972 AACCACGTAAACTTTGACCAAG 57.374 40.909 0.00 0.00 38.64 3.61
197 198 4.458295 TCAAACCACGTAAACTTTGACCAA 59.542 37.500 0.00 0.00 29.66 3.67
198 199 4.008330 TCAAACCACGTAAACTTTGACCA 58.992 39.130 0.00 0.00 29.66 4.02
199 200 4.345288 GTCAAACCACGTAAACTTTGACC 58.655 43.478 19.18 8.99 43.35 4.02
200 201 5.225899 AGTCAAACCACGTAAACTTTGAC 57.774 39.130 20.83 20.83 46.84 3.18
201 202 5.411977 TGAAGTCAAACCACGTAAACTTTGA 59.588 36.000 0.00 0.00 31.68 2.69
202 203 5.632959 TGAAGTCAAACCACGTAAACTTTG 58.367 37.500 0.00 0.00 0.00 2.77
203 204 5.883503 TGAAGTCAAACCACGTAAACTTT 57.116 34.783 0.00 0.00 0.00 2.66
204 205 5.883503 TTGAAGTCAAACCACGTAAACTT 57.116 34.783 0.00 0.00 32.11 2.66
205 206 5.883503 TTTGAAGTCAAACCACGTAAACT 57.116 34.783 2.32 0.00 40.55 2.66
235 236 8.636213 CCTCTGGTCCTTTTTAGTTCGTATATA 58.364 37.037 0.00 0.00 0.00 0.86
236 237 7.418712 CCCTCTGGTCCTTTTTAGTTCGTATAT 60.419 40.741 0.00 0.00 0.00 0.86
237 238 6.127253 CCCTCTGGTCCTTTTTAGTTCGTATA 60.127 42.308 0.00 0.00 0.00 1.47
238 239 5.338137 CCCTCTGGTCCTTTTTAGTTCGTAT 60.338 44.000 0.00 0.00 0.00 3.06
239 240 4.020839 CCCTCTGGTCCTTTTTAGTTCGTA 60.021 45.833 0.00 0.00 0.00 3.43
240 241 3.244457 CCCTCTGGTCCTTTTTAGTTCGT 60.244 47.826 0.00 0.00 0.00 3.85
241 242 3.007614 TCCCTCTGGTCCTTTTTAGTTCG 59.992 47.826 0.00 0.00 0.00 3.95
242 243 4.041815 ACTCCCTCTGGTCCTTTTTAGTTC 59.958 45.833 0.00 0.00 0.00 3.01
243 244 3.981375 ACTCCCTCTGGTCCTTTTTAGTT 59.019 43.478 0.00 0.00 0.00 2.24
244 245 3.599348 ACTCCCTCTGGTCCTTTTTAGT 58.401 45.455 0.00 0.00 0.00 2.24
245 246 4.778427 ACTACTCCCTCTGGTCCTTTTTAG 59.222 45.833 0.00 0.00 0.00 1.85
246 247 4.759953 ACTACTCCCTCTGGTCCTTTTTA 58.240 43.478 0.00 0.00 0.00 1.52
247 248 3.599348 ACTACTCCCTCTGGTCCTTTTT 58.401 45.455 0.00 0.00 0.00 1.94
248 249 3.277416 ACTACTCCCTCTGGTCCTTTT 57.723 47.619 0.00 0.00 0.00 2.27
249 250 3.277416 AACTACTCCCTCTGGTCCTTT 57.723 47.619 0.00 0.00 0.00 3.11
250 251 3.277416 AAACTACTCCCTCTGGTCCTT 57.723 47.619 0.00 0.00 0.00 3.36
251 252 3.596956 TCTAAACTACTCCCTCTGGTCCT 59.403 47.826 0.00 0.00 0.00 3.85
252 253 3.978610 TCTAAACTACTCCCTCTGGTCC 58.021 50.000 0.00 0.00 0.00 4.46
253 254 5.997384 TTTCTAAACTACTCCCTCTGGTC 57.003 43.478 0.00 0.00 0.00 4.02
254 255 6.082707 TCTTTTCTAAACTACTCCCTCTGGT 58.917 40.000 0.00 0.00 0.00 4.00
255 256 6.607004 TCTTTTCTAAACTACTCCCTCTGG 57.393 41.667 0.00 0.00 0.00 3.86
256 257 7.550906 CCAATCTTTTCTAAACTACTCCCTCTG 59.449 40.741 0.00 0.00 0.00 3.35
257 258 7.458170 TCCAATCTTTTCTAAACTACTCCCTCT 59.542 37.037 0.00 0.00 0.00 3.69
258 259 7.549842 GTCCAATCTTTTCTAAACTACTCCCTC 59.450 40.741 0.00 0.00 0.00 4.30
259 260 7.237887 AGTCCAATCTTTTCTAAACTACTCCCT 59.762 37.037 0.00 0.00 0.00 4.20
260 261 7.334671 CAGTCCAATCTTTTCTAAACTACTCCC 59.665 40.741 0.00 0.00 0.00 4.30
261 262 8.095169 TCAGTCCAATCTTTTCTAAACTACTCC 58.905 37.037 0.00 0.00 0.00 3.85
262 263 9.660180 ATCAGTCCAATCTTTTCTAAACTACTC 57.340 33.333 0.00 0.00 0.00 2.59
446 447 5.458041 AAAGAAATGTGACATGGTGGAAG 57.542 39.130 0.00 0.00 0.00 3.46
720 731 6.382282 TCTGAGTTCCATCAGTATCATTCACT 59.618 38.462 3.84 0.00 45.70 3.41
912 923 6.169094 GTTCTCTCTCATTGATTCCAACTCA 58.831 40.000 0.00 0.00 34.72 3.41
925 936 7.901029 TGTAGTTCAAGAATGTTCTCTCTCAT 58.099 34.615 0.00 0.00 36.28 2.90
933 944 8.539770 TCTCTGATTGTAGTTCAAGAATGTTC 57.460 34.615 0.00 0.00 39.55 3.18
1024 1035 7.233553 TCCTTCAATCTCAGAAACTGAACTAGA 59.766 37.037 0.00 0.00 40.18 2.43
1073 1084 1.340991 GCCCAACAGAATAGCTCCCAA 60.341 52.381 0.00 0.00 0.00 4.12
1936 1956 3.511699 TGAGTACTGCTTGTTGCTATCG 58.488 45.455 0.00 0.00 43.37 2.92
2026 2046 4.080975 TGAGTGTAATCATGGTCATCTGCA 60.081 41.667 0.00 0.00 0.00 4.41
2181 2201 2.290916 TCTAGAGCCTCTGATTTACGCG 59.709 50.000 3.53 3.53 0.00 6.01
2293 2313 2.359900 ACCATTTGCTCAATCTCCGAC 58.640 47.619 0.00 0.00 0.00 4.79
2406 2433 9.361315 TGTCATTCTGCATTCAAATTGAAATAG 57.639 29.630 12.75 10.75 40.12 1.73
2548 2575 6.647334 TGCAAGATTTTGTCACCTTTATCA 57.353 33.333 0.00 0.00 36.65 2.15
2584 2611 7.602265 CCAGGGAACAAAATTAACACCATAAAG 59.398 37.037 0.00 0.00 0.00 1.85
2705 2732 1.632920 TGCACTTACCACATCCCATCA 59.367 47.619 0.00 0.00 0.00 3.07
2708 2735 2.897271 ATTGCACTTACCACATCCCA 57.103 45.000 0.00 0.00 0.00 4.37
2988 3072 2.303175 GTTTAGCCAAGGTCCACACAA 58.697 47.619 0.00 0.00 0.00 3.33
3032 3116 7.741027 AATCTCTCGCAATGATGAACATAAT 57.259 32.000 0.00 0.00 38.38 1.28
3039 3123 4.412796 AGGAAATCTCTCGCAATGATGA 57.587 40.909 0.00 0.00 0.00 2.92
3049 3133 5.546526 AGGCGATAATGAAGGAAATCTCTC 58.453 41.667 0.00 0.00 0.00 3.20
3054 3138 5.888161 AGTGAAAGGCGATAATGAAGGAAAT 59.112 36.000 0.00 0.00 0.00 2.17
3068 3152 4.766404 AGGTATTTTTCAGTGAAAGGCG 57.234 40.909 17.36 0.00 32.93 5.52
3131 3215 4.785346 ACGGAGGGAGTAGTACATAAGA 57.215 45.455 2.52 0.00 0.00 2.10
3140 3224 3.629142 ATTTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
3143 3227 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3144 3228 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3145 3229 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3146 3230 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
3149 3233 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
3150 3234 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
3151 3235 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
3152 3236 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
3153 3237 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
3154 3238 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
3187 3271 9.125026 CCAAAATAGATGGCTCAACTTTATACT 57.875 33.333 0.00 0.00 0.00 2.12
3188 3272 9.120538 TCCAAAATAGATGGCTCAACTTTATAC 57.879 33.333 0.00 0.00 37.88 1.47
3189 3273 9.693739 TTCCAAAATAGATGGCTCAACTTTATA 57.306 29.630 0.00 0.00 37.88 0.98
3190 3274 8.470002 GTTCCAAAATAGATGGCTCAACTTTAT 58.530 33.333 0.00 0.00 37.88 1.40
3191 3275 7.361713 CGTTCCAAAATAGATGGCTCAACTTTA 60.362 37.037 0.00 0.00 37.88 1.85
3192 3276 6.570378 CGTTCCAAAATAGATGGCTCAACTTT 60.570 38.462 0.00 0.00 37.88 2.66
3193 3277 5.106157 CGTTCCAAAATAGATGGCTCAACTT 60.106 40.000 0.00 0.00 37.88 2.66
3194 3278 4.396166 CGTTCCAAAATAGATGGCTCAACT 59.604 41.667 0.00 0.00 37.88 3.16
3195 3279 4.438744 CCGTTCCAAAATAGATGGCTCAAC 60.439 45.833 0.00 0.00 37.88 3.18
3196 3280 3.694072 CCGTTCCAAAATAGATGGCTCAA 59.306 43.478 0.00 0.00 37.88 3.02
3197 3281 3.054728 TCCGTTCCAAAATAGATGGCTCA 60.055 43.478 0.00 0.00 37.88 4.26
3198 3282 3.541632 TCCGTTCCAAAATAGATGGCTC 58.458 45.455 0.00 0.00 37.88 4.70
3199 3283 3.545703 CTCCGTTCCAAAATAGATGGCT 58.454 45.455 0.00 0.00 37.88 4.75
3200 3284 2.618709 CCTCCGTTCCAAAATAGATGGC 59.381 50.000 0.00 0.00 37.88 4.40
3201 3285 3.214328 CCCTCCGTTCCAAAATAGATGG 58.786 50.000 0.00 0.00 39.41 3.51
3202 3286 3.627577 CACCCTCCGTTCCAAAATAGATG 59.372 47.826 0.00 0.00 0.00 2.90
3203 3287 3.265995 ACACCCTCCGTTCCAAAATAGAT 59.734 43.478 0.00 0.00 0.00 1.98
3204 3288 2.640826 ACACCCTCCGTTCCAAAATAGA 59.359 45.455 0.00 0.00 0.00 1.98
3205 3289 3.067684 ACACCCTCCGTTCCAAAATAG 57.932 47.619 0.00 0.00 0.00 1.73
3206 3290 3.617045 CGTACACCCTCCGTTCCAAAATA 60.617 47.826 0.00 0.00 0.00 1.40
3207 3291 2.786777 GTACACCCTCCGTTCCAAAAT 58.213 47.619 0.00 0.00 0.00 1.82
3208 3292 1.540797 CGTACACCCTCCGTTCCAAAA 60.541 52.381 0.00 0.00 0.00 2.44
3209 3293 0.033781 CGTACACCCTCCGTTCCAAA 59.966 55.000 0.00 0.00 0.00 3.28
3210 3294 1.114722 ACGTACACCCTCCGTTCCAA 61.115 55.000 0.00 0.00 0.00 3.53
3211 3295 1.531365 ACGTACACCCTCCGTTCCA 60.531 57.895 0.00 0.00 0.00 3.53
3212 3296 1.080298 CACGTACACCCTCCGTTCC 60.080 63.158 0.00 0.00 31.46 3.62
3213 3297 1.080298 CCACGTACACCCTCCGTTC 60.080 63.158 0.00 0.00 31.46 3.95
3214 3298 3.053828 CCACGTACACCCTCCGTT 58.946 61.111 0.00 0.00 31.46 4.44
3215 3299 3.688159 GCCACGTACACCCTCCGT 61.688 66.667 0.00 0.00 34.71 4.69
3216 3300 3.642778 CTGCCACGTACACCCTCCG 62.643 68.421 0.00 0.00 0.00 4.63
3217 3301 2.264794 CTGCCACGTACACCCTCC 59.735 66.667 0.00 0.00 0.00 4.30
3218 3302 2.264794 CCTGCCACGTACACCCTC 59.735 66.667 0.00 0.00 0.00 4.30
3219 3303 3.319198 CCCTGCCACGTACACCCT 61.319 66.667 0.00 0.00 0.00 4.34
3220 3304 3.310860 CTCCCTGCCACGTACACCC 62.311 68.421 0.00 0.00 0.00 4.61
3221 3305 1.823169 TTCTCCCTGCCACGTACACC 61.823 60.000 0.00 0.00 0.00 4.16
3222 3306 0.249398 ATTCTCCCTGCCACGTACAC 59.751 55.000 0.00 0.00 0.00 2.90
3223 3307 0.249120 CATTCTCCCTGCCACGTACA 59.751 55.000 0.00 0.00 0.00 2.90
3224 3308 0.249398 ACATTCTCCCTGCCACGTAC 59.751 55.000 0.00 0.00 0.00 3.67
3225 3309 0.249120 CACATTCTCCCTGCCACGTA 59.751 55.000 0.00 0.00 0.00 3.57
3226 3310 1.003355 CACATTCTCCCTGCCACGT 60.003 57.895 0.00 0.00 0.00 4.49
3294 3378 3.364621 GTGCCAGCACGTTTTTATGATTG 59.635 43.478 7.07 0.00 37.19 2.67
3311 3395 2.382770 ACAGGTCCCAACAGTGCCA 61.383 57.895 0.00 0.00 0.00 4.92
3352 3436 9.918630 GCTGCAGAATACCAAATCATTAAATAT 57.081 29.630 20.43 0.00 0.00 1.28
3405 3489 4.770531 AGACATGGCACTGTACAGTAAGTA 59.229 41.667 27.48 14.60 40.20 2.24
3559 3644 3.190878 GCAGGACCAATTCCAGCG 58.809 61.111 0.00 0.00 46.08 5.18
3625 3710 2.075338 CTGCTGCTTTCTCCAGTTCTC 58.925 52.381 0.00 0.00 32.93 2.87
3859 3947 7.701924 GCACATGCATGTATACAGTAAACATTT 59.298 33.333 30.92 0.10 39.39 2.32
3862 3950 6.117911 GCACATGCATGTATACAGTAAACA 57.882 37.500 30.92 5.30 39.39 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.