Multiple sequence alignment - TraesCS6A01G117400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G117400 chr6A 100.000 2468 0 0 1 2468 87905877 87908344 0.000000e+00 4558.0
1 TraesCS6A01G117400 chr6A 82.257 1223 133 47 788 1975 87653965 87652792 0.000000e+00 979.0
2 TraesCS6A01G117400 chr6A 92.827 474 31 1 998 1468 180625683 180625210 0.000000e+00 684.0
3 TraesCS6A01G117400 chr6A 91.667 60 5 0 2041 2100 87907794 87907853 1.570000e-12 84.2
4 TraesCS6A01G117400 chr6A 91.667 60 5 0 1918 1977 87907917 87907976 1.570000e-12 84.2
5 TraesCS6A01G117400 chr6A 100.000 36 0 0 1974 2009 87907802 87907837 1.580000e-07 67.6
6 TraesCS6A01G117400 chr6A 100.000 36 0 0 1926 1961 87907850 87907885 1.580000e-07 67.6
7 TraesCS6A01G117400 chr6D 91.235 2202 133 25 307 2468 70633631 70635812 0.000000e+00 2942.0
8 TraesCS6A01G117400 chr6D 82.650 1147 127 35 788 1898 69933015 69931905 0.000000e+00 950.0
9 TraesCS6A01G117400 chr6D 95.000 60 3 0 1918 1977 70635362 70635421 7.270000e-16 95.3
10 TraesCS6A01G117400 chr6D 88.000 75 8 1 2024 2098 69931441 69931368 1.220000e-13 87.9
11 TraesCS6A01G117400 chr6D 90.741 54 4 1 1922 1975 69931420 69931368 1.220000e-08 71.3
12 TraesCS6A01G117400 chr6D 100.000 36 0 0 1926 1961 70635295 70635330 1.580000e-07 67.6
13 TraesCS6A01G117400 chr6D 97.222 36 1 0 1974 2009 70635247 70635282 7.370000e-06 62.1
14 TraesCS6A01G117400 chr6D 97.222 36 1 0 1974 2009 70635370 70635405 7.370000e-06 62.1
15 TraesCS6A01G117400 chr6B 90.961 1217 71 25 778 1977 145043415 145044609 0.000000e+00 1602.0
16 TraesCS6A01G117400 chr6B 84.200 1038 114 27 788 1798 144920954 144919940 0.000000e+00 963.0
17 TraesCS6A01G117400 chr6B 93.235 473 32 0 996 1468 237416902 237416430 0.000000e+00 697.0
18 TraesCS6A01G117400 chr6B 87.259 259 29 4 1 257 532242819 532242563 2.400000e-75 292.0
19 TraesCS6A01G117400 chr6B 85.159 283 31 3 497 770 145043093 145043373 1.870000e-71 279.0
20 TraesCS6A01G117400 chr6B 91.089 202 10 4 2008 2201 145044517 145044718 1.460000e-67 267.0
21 TraesCS6A01G117400 chr6B 86.979 192 25 0 307 498 145041447 145041638 1.490000e-52 217.0
22 TraesCS6A01G117400 chr6B 79.651 172 20 6 2296 2467 145044831 145044987 2.590000e-20 110.0
23 TraesCS6A01G117400 chr6B 100.000 36 0 0 1974 2009 145044558 145044593 1.580000e-07 67.6
24 TraesCS6A01G117400 chr6B 100.000 30 0 0 1944 1973 237415953 237415924 3.430000e-04 56.5
25 TraesCS6A01G117400 chr6B 96.970 33 0 1 2067 2098 237415953 237415921 1.000000e-03 54.7
26 TraesCS6A01G117400 chr2B 92.537 536 33 6 992 1520 756674451 756673916 0.000000e+00 761.0
27 TraesCS6A01G117400 chr2B 88.398 181 18 3 307 486 629647479 629647301 5.350000e-52 215.0
28 TraesCS6A01G117400 chr5B 90.871 482 36 5 983 1464 423796169 423796642 7.440000e-180 640.0
29 TraesCS6A01G117400 chr5B 83.240 179 29 1 307 485 487921780 487921603 1.960000e-36 163.0
30 TraesCS6A01G117400 chr7A 92.218 257 17 2 1 255 734400684 734400429 6.490000e-96 361.0
31 TraesCS6A01G117400 chr7A 86.590 261 26 5 1 257 222512298 222512043 1.870000e-71 279.0
32 TraesCS6A01G117400 chr7A 86.188 181 22 3 307 485 612759069 612758890 2.500000e-45 193.0
33 TraesCS6A01G117400 chr7A 91.743 109 7 2 110 216 515965133 515965241 1.530000e-32 150.0
34 TraesCS6A01G117400 chr3B 88.845 251 24 3 1 248 228713181 228712932 3.080000e-79 305.0
35 TraesCS6A01G117400 chr3B 86.047 258 31 2 1 257 693571054 693571307 3.130000e-69 272.0
36 TraesCS6A01G117400 chr4A 88.532 218 23 2 1 216 49936368 49936585 1.880000e-66 263.0
37 TraesCS6A01G117400 chr3D 90.909 143 12 1 1 143 390201657 390201516 9.010000e-45 191.0
38 TraesCS6A01G117400 chr3D 100.000 55 0 0 200 254 390201239 390201185 4.340000e-18 102.0
39 TraesCS6A01G117400 chr4B 82.902 193 32 1 307 498 425290330 425290138 3.260000e-39 172.0
40 TraesCS6A01G117400 chr4D 83.721 172 26 2 316 486 439729596 439729426 7.060000e-36 161.0
41 TraesCS6A01G117400 chr1D 82.778 180 30 1 307 485 433415226 433415405 2.540000e-35 159.0
42 TraesCS6A01G117400 chr5D 81.768 181 32 1 307 486 417046529 417046709 1.530000e-32 150.0
43 TraesCS6A01G117400 chr1B 80.311 193 37 1 307 498 97491552 97491744 7.110000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G117400 chr6A 87905877 87908344 2467 False 972.320000 4558 96.666800 1 2468 5 chr6A.!!$F1 2467
1 TraesCS6A01G117400 chr6A 87652792 87653965 1173 True 979.000000 979 82.257000 788 1975 1 chr6A.!!$R1 1187
2 TraesCS6A01G117400 chr6D 70633631 70635812 2181 False 645.820000 2942 96.135800 307 2468 5 chr6D.!!$F1 2161
3 TraesCS6A01G117400 chr6D 69931368 69933015 1647 True 369.733333 950 87.130333 788 2098 3 chr6D.!!$R1 1310
4 TraesCS6A01G117400 chr6B 144919940 144920954 1014 True 963.000000 963 84.200000 788 1798 1 chr6B.!!$R1 1010
5 TraesCS6A01G117400 chr6B 145041447 145044987 3540 False 423.766667 1602 88.973167 307 2467 6 chr6B.!!$F1 2160
6 TraesCS6A01G117400 chr6B 237415921 237416902 981 True 269.400000 697 96.735000 996 2098 3 chr6B.!!$R3 1102
7 TraesCS6A01G117400 chr2B 756673916 756674451 535 True 761.000000 761 92.537000 992 1520 1 chr2B.!!$R2 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.031449 GGCGAGCAGGTAGATCTGTC 59.969 60.0 5.18 0.0 37.12 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2060 4039 2.359975 CCCGCCAAACTCCCAGAC 60.36 66.667 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.351938 CGTCTCCGGCGACACCAA 62.352 66.667 23.51 0.00 39.03 3.67
45 46 2.737376 GTCTCCGGCGACACCAAC 60.737 66.667 19.57 0.00 39.03 3.77
46 47 3.998672 TCTCCGGCGACACCAACC 61.999 66.667 9.30 0.00 39.03 3.77
49 50 4.939368 CCGGCGACACCAACCCAA 62.939 66.667 9.30 0.00 39.03 4.12
50 51 2.671619 CGGCGACACCAACCCAAT 60.672 61.111 0.00 0.00 39.03 3.16
51 52 2.686816 CGGCGACACCAACCCAATC 61.687 63.158 0.00 0.00 39.03 2.67
52 53 2.686816 GGCGACACCAACCCAATCG 61.687 63.158 0.00 0.00 38.86 3.34
53 54 2.686816 GCGACACCAACCCAATCGG 61.687 63.158 0.00 0.00 33.45 4.18
64 65 2.872408 CCAATCGGGCACAACATCT 58.128 52.632 0.00 0.00 0.00 2.90
65 66 0.734889 CCAATCGGGCACAACATCTC 59.265 55.000 0.00 0.00 0.00 2.75
66 67 0.734889 CAATCGGGCACAACATCTCC 59.265 55.000 0.00 0.00 0.00 3.71
67 68 0.744414 AATCGGGCACAACATCTCCG 60.744 55.000 0.00 0.00 41.80 4.63
68 69 2.264480 CGGGCACAACATCTCCGA 59.736 61.111 0.00 0.00 42.94 4.55
69 70 1.375396 CGGGCACAACATCTCCGAA 60.375 57.895 0.00 0.00 42.94 4.30
70 71 0.953471 CGGGCACAACATCTCCGAAA 60.953 55.000 0.00 0.00 42.94 3.46
71 72 1.243902 GGGCACAACATCTCCGAAAA 58.756 50.000 0.00 0.00 0.00 2.29
72 73 1.818674 GGGCACAACATCTCCGAAAAT 59.181 47.619 0.00 0.00 0.00 1.82
73 74 2.415893 GGGCACAACATCTCCGAAAATG 60.416 50.000 0.00 0.00 0.00 2.32
74 75 2.253603 GCACAACATCTCCGAAAATGC 58.746 47.619 0.00 0.00 0.00 3.56
75 76 2.867429 CACAACATCTCCGAAAATGCC 58.133 47.619 0.00 0.00 0.00 4.40
76 77 1.818674 ACAACATCTCCGAAAATGCCC 59.181 47.619 0.00 0.00 0.00 5.36
77 78 1.094785 AACATCTCCGAAAATGCCCG 58.905 50.000 0.00 0.00 0.00 6.13
78 79 0.748005 ACATCTCCGAAAATGCCCGG 60.748 55.000 0.00 0.00 46.57 5.73
79 80 0.748005 CATCTCCGAAAATGCCCGGT 60.748 55.000 0.00 0.00 45.48 5.28
80 81 0.834612 ATCTCCGAAAATGCCCGGTA 59.165 50.000 0.00 0.00 45.48 4.02
81 82 0.108041 TCTCCGAAAATGCCCGGTAC 60.108 55.000 0.00 0.00 45.48 3.34
82 83 0.391927 CTCCGAAAATGCCCGGTACA 60.392 55.000 0.00 0.00 45.48 2.90
83 84 0.674269 TCCGAAAATGCCCGGTACAC 60.674 55.000 0.00 0.00 45.48 2.90
84 85 0.956410 CCGAAAATGCCCGGTACACA 60.956 55.000 0.00 0.00 40.78 3.72
85 86 0.875728 CGAAAATGCCCGGTACACAA 59.124 50.000 0.00 0.00 0.00 3.33
86 87 1.267261 CGAAAATGCCCGGTACACAAA 59.733 47.619 0.00 0.00 0.00 2.83
87 88 2.667171 CGAAAATGCCCGGTACACAAAG 60.667 50.000 0.00 0.00 0.00 2.77
88 89 1.253100 AAATGCCCGGTACACAAAGG 58.747 50.000 0.00 0.00 0.00 3.11
89 90 0.610785 AATGCCCGGTACACAAAGGG 60.611 55.000 0.00 0.23 46.44 3.95
90 91 2.360726 GCCCGGTACACAAAGGGG 60.361 66.667 0.00 0.00 43.95 4.79
91 92 2.353573 CCCGGTACACAAAGGGGG 59.646 66.667 0.00 0.00 40.18 5.40
105 106 3.873812 GGGGGAGGCATGTACGGG 61.874 72.222 0.00 0.00 0.00 5.28
106 107 2.766651 GGGGAGGCATGTACGGGA 60.767 66.667 0.00 0.00 0.00 5.14
107 108 2.147387 GGGGAGGCATGTACGGGAT 61.147 63.158 0.00 0.00 0.00 3.85
108 109 1.371558 GGGAGGCATGTACGGGATC 59.628 63.158 0.00 0.00 0.00 3.36
109 110 1.006102 GGAGGCATGTACGGGATCG 60.006 63.158 0.00 0.00 43.02 3.69
143 144 3.437867 CGGCGAGCAGGTAGATCT 58.562 61.111 0.00 0.00 0.00 2.75
144 145 1.007964 CGGCGAGCAGGTAGATCTG 60.008 63.158 5.18 0.00 37.79 2.90
145 146 1.729470 CGGCGAGCAGGTAGATCTGT 61.729 60.000 5.18 0.00 37.12 3.41
146 147 0.031449 GGCGAGCAGGTAGATCTGTC 59.969 60.000 5.18 0.00 37.12 3.51
147 148 0.317436 GCGAGCAGGTAGATCTGTCG 60.317 60.000 5.18 5.43 39.20 4.35
148 149 1.300481 CGAGCAGGTAGATCTGTCGA 58.700 55.000 5.18 0.00 38.88 4.20
149 150 1.003331 CGAGCAGGTAGATCTGTCGAC 60.003 57.143 9.11 9.11 38.88 4.20
150 151 2.294074 GAGCAGGTAGATCTGTCGACT 58.706 52.381 17.92 0.00 37.12 4.18
151 152 2.289547 GAGCAGGTAGATCTGTCGACTC 59.710 54.545 17.92 6.13 37.12 3.36
152 153 2.092646 AGCAGGTAGATCTGTCGACTCT 60.093 50.000 17.92 13.61 37.12 3.24
153 154 2.289547 GCAGGTAGATCTGTCGACTCTC 59.710 54.545 17.92 10.40 37.12 3.20
154 155 2.542178 CAGGTAGATCTGTCGACTCTCG 59.458 54.545 17.92 2.90 42.10 4.04
155 156 1.868498 GGTAGATCTGTCGACTCTCGG 59.132 57.143 17.92 0.00 40.88 4.63
156 157 1.262151 GTAGATCTGTCGACTCTCGGC 59.738 57.143 17.92 1.59 46.01 5.54
161 162 2.105128 GTCGACTCTCGGCATGGG 59.895 66.667 8.70 0.00 45.01 4.00
162 163 3.147595 TCGACTCTCGGCATGGGG 61.148 66.667 0.00 0.00 40.88 4.96
163 164 4.899239 CGACTCTCGGCATGGGGC 62.899 72.222 0.00 0.00 43.74 5.80
222 223 4.835891 CGGCGAGGGGGAGTAGGT 62.836 72.222 0.00 0.00 0.00 3.08
223 224 3.155167 GGCGAGGGGGAGTAGGTG 61.155 72.222 0.00 0.00 0.00 4.00
224 225 3.155167 GCGAGGGGGAGTAGGTGG 61.155 72.222 0.00 0.00 0.00 4.61
225 226 2.444140 CGAGGGGGAGTAGGTGGG 60.444 72.222 0.00 0.00 0.00 4.61
226 227 2.040779 GAGGGGGAGTAGGTGGGG 60.041 72.222 0.00 0.00 0.00 4.96
227 228 2.542541 AGGGGGAGTAGGTGGGGA 60.543 66.667 0.00 0.00 0.00 4.81
228 229 2.040779 GGGGGAGTAGGTGGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
229 230 2.040779 GGGGAGTAGGTGGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
230 231 2.643808 GGGGAGTAGGTGGGGAGGA 61.644 68.421 0.00 0.00 0.00 3.71
231 232 1.075151 GGGAGTAGGTGGGGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
232 233 1.704704 GGAGTAGGTGGGGAGGAGT 59.295 63.158 0.00 0.00 0.00 3.85
233 234 0.397394 GGAGTAGGTGGGGAGGAGTC 60.397 65.000 0.00 0.00 0.00 3.36
234 235 0.752376 GAGTAGGTGGGGAGGAGTCG 60.752 65.000 0.00 0.00 0.00 4.18
235 236 2.043248 TAGGTGGGGAGGAGTCGC 60.043 66.667 0.00 0.00 34.85 5.19
262 263 2.584418 CGAGAGCATGGGTCGCAG 60.584 66.667 0.00 0.00 35.00 5.18
263 264 2.894387 GAGAGCATGGGTCGCAGC 60.894 66.667 0.00 0.00 35.00 5.25
264 265 4.479993 AGAGCATGGGTCGCAGCC 62.480 66.667 0.00 0.00 35.00 4.85
265 266 4.479993 GAGCATGGGTCGCAGCCT 62.480 66.667 0.00 0.00 36.53 4.58
266 267 3.083349 AGCATGGGTCGCAGCCTA 61.083 61.111 0.00 0.00 36.53 3.93
267 268 2.111878 GCATGGGTCGCAGCCTAT 59.888 61.111 0.00 0.00 36.53 2.57
268 269 2.256591 GCATGGGTCGCAGCCTATG 61.257 63.158 13.31 13.31 46.34 2.23
281 282 3.719699 CCTATGCGGCCAAAAGTTG 57.280 52.632 2.24 0.00 0.00 3.16
299 300 6.387041 AAGTTGGTCCTACTTTTGCTTAAC 57.613 37.500 12.36 0.00 32.06 2.01
300 301 4.825634 AGTTGGTCCTACTTTTGCTTAACC 59.174 41.667 0.00 0.00 0.00 2.85
301 302 3.404899 TGGTCCTACTTTTGCTTAACCG 58.595 45.455 0.00 0.00 0.00 4.44
302 303 2.745821 GGTCCTACTTTTGCTTAACCGG 59.254 50.000 0.00 0.00 0.00 5.28
303 304 2.745821 GTCCTACTTTTGCTTAACCGGG 59.254 50.000 6.32 0.00 0.00 5.73
304 305 2.372837 TCCTACTTTTGCTTAACCGGGT 59.627 45.455 6.32 0.00 0.00 5.28
305 306 2.745821 CCTACTTTTGCTTAACCGGGTC 59.254 50.000 6.32 0.00 0.00 4.46
314 315 3.008157 TGCTTAACCGGGTCAAGATGTAA 59.992 43.478 14.45 0.00 0.00 2.41
384 385 4.690748 GTCATGTGGAACTTCGAGATGAAA 59.309 41.667 13.14 0.00 36.83 2.69
385 386 5.179368 GTCATGTGGAACTTCGAGATGAAAA 59.821 40.000 13.14 0.00 36.83 2.29
390 391 7.751732 TGTGGAACTTCGAGATGAAAATATTG 58.248 34.615 0.00 0.00 38.04 1.90
412 413 6.155475 TGGTCAAAGGAAATTTCAAACGAT 57.845 33.333 19.49 0.00 0.00 3.73
422 423 0.597898 TTCAAACGATCGACCGTGCA 60.598 50.000 24.34 1.32 42.54 4.57
427 428 0.666374 ACGATCGACCGTGCATGATA 59.334 50.000 24.34 0.00 41.70 2.15
440 441 6.365789 ACCGTGCATGATAAATTTGACAAAAG 59.634 34.615 7.72 0.00 0.00 2.27
443 444 7.114670 CGTGCATGATAAATTTGACAAAAGTCA 59.885 33.333 4.41 7.38 0.00 3.41
445 446 9.142515 TGCATGATAAATTTGACAAAAGTCATC 57.857 29.630 4.41 6.49 32.91 2.92
458 459 5.774690 ACAAAAGTCATCCAAAATAGCTCCA 59.225 36.000 0.00 0.00 0.00 3.86
479 480 6.511416 TCCAAACATGAACACGAAATTGAAT 58.489 32.000 0.00 0.00 0.00 2.57
511 1968 1.895131 ACCAAACATGGATGTGCTTCC 59.105 47.619 1.10 0.00 41.61 3.46
515 1972 4.503643 CCAAACATGGATGTGCTTCCTTTT 60.504 41.667 0.00 1.42 41.61 2.27
523 1980 8.464404 CATGGATGTGCTTCCTTTTATATATGG 58.536 37.037 0.00 0.00 36.68 2.74
555 2012 6.755141 TCTTAAATCTAAGCACCATCGTGTAC 59.245 38.462 0.00 0.00 42.39 2.90
578 2035 6.579865 ACATTAGACGGAACTAATAAGTGGG 58.420 40.000 9.99 2.94 39.92 4.61
628 2086 5.221843 ACCACATACAACCTCACATACAACT 60.222 40.000 0.00 0.00 0.00 3.16
629 2087 6.014070 ACCACATACAACCTCACATACAACTA 60.014 38.462 0.00 0.00 0.00 2.24
646 2104 6.074544 ACAACTAGTTATCATAGAGGTCGC 57.925 41.667 8.04 0.00 0.00 5.19
650 2108 6.242396 ACTAGTTATCATAGAGGTCGCATCT 58.758 40.000 0.00 0.21 0.00 2.90
652 2110 5.321102 AGTTATCATAGAGGTCGCATCTCT 58.679 41.667 4.66 4.66 43.31 3.10
657 2115 0.323816 AGAGGTCGCATCTCTGGACA 60.324 55.000 0.00 0.00 39.83 4.02
687 2153 0.387622 TTTGCATTGCTCGAGCTTGC 60.388 50.000 37.19 37.19 44.89 4.01
703 2169 2.099756 GCTTGCCTCACTGAAAACTGTT 59.900 45.455 0.00 0.00 0.00 3.16
713 2179 3.247648 ACTGAAAACTGTTGATTCGGTCG 59.752 43.478 11.73 0.00 38.02 4.79
723 2189 3.770263 TGATTCGGTCGTTTCTATCGT 57.230 42.857 0.00 0.00 0.00 3.73
744 2210 2.129607 GTTTGGCTCAATGCACACAAG 58.870 47.619 0.00 0.00 45.15 3.16
765 2266 6.650390 ACAAGCAAACAATACAATTTCATCCC 59.350 34.615 0.00 0.00 0.00 3.85
768 2269 5.062058 GCAAACAATACAATTTCATCCCGTG 59.938 40.000 0.00 0.00 0.00 4.94
769 2270 4.370364 ACAATACAATTTCATCCCGTGC 57.630 40.909 0.00 0.00 0.00 5.34
770 2271 3.761218 ACAATACAATTTCATCCCGTGCA 59.239 39.130 0.00 0.00 0.00 4.57
771 2272 4.142403 ACAATACAATTTCATCCCGTGCAG 60.142 41.667 0.00 0.00 0.00 4.41
772 2273 0.527565 ACAATTTCATCCCGTGCAGC 59.472 50.000 0.00 0.00 0.00 5.25
774 2275 0.813184 AATTTCATCCCGTGCAGCAG 59.187 50.000 0.00 0.00 0.00 4.24
775 2276 0.035152 ATTTCATCCCGTGCAGCAGA 60.035 50.000 0.00 0.00 0.00 4.26
776 2277 0.250684 TTTCATCCCGTGCAGCAGAA 60.251 50.000 0.00 0.00 0.00 3.02
875 2378 2.685380 CCGCCACTTCCTCCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
889 2392 1.001760 CTCCTCCCTCCCCTCGAAA 59.998 63.158 0.00 0.00 0.00 3.46
899 2402 4.593634 CCCTCCCCTCGAAATAAATACTCT 59.406 45.833 0.00 0.00 0.00 3.24
975 2480 2.179427 CCCACACACATCTCTCCACTA 58.821 52.381 0.00 0.00 0.00 2.74
981 2486 2.311463 CACATCTCTCCACTACCCGAT 58.689 52.381 0.00 0.00 0.00 4.18
1047 2566 3.997400 GAAGGGGAAGAAGGGCGCC 62.997 68.421 21.18 21.18 37.38 6.53
1468 2987 1.079621 TCCCCCAAGAAGGCGTAGA 59.920 57.895 0.00 0.00 35.39 2.59
1514 3047 1.494721 GGGATGTATGGATGGGTGTGT 59.505 52.381 0.00 0.00 0.00 3.72
1574 3110 4.725556 TGTCGTTGTATTTTCTGACTGC 57.274 40.909 0.00 0.00 0.00 4.40
1656 3198 1.698506 TGGCCCTTGTTGTCGATTTT 58.301 45.000 0.00 0.00 0.00 1.82
1668 3210 7.026631 TGTTGTCGATTTTCTCAGAATTGTT 57.973 32.000 0.00 0.00 0.00 2.83
1674 3234 7.905493 GTCGATTTTCTCAGAATTGTTATCACC 59.095 37.037 0.00 0.00 0.00 4.02
1690 3250 6.435591 TGTTATCACCCATGTGCTTTGAATTA 59.564 34.615 0.00 0.00 42.46 1.40
1756 3327 0.812014 TCAACTTCTTTGGCGCGTGA 60.812 50.000 8.43 0.00 35.69 4.35
1759 3330 0.032952 ACTTCTTTGGCGCGTGACTA 59.967 50.000 8.43 0.00 0.00 2.59
1760 3331 1.144969 CTTCTTTGGCGCGTGACTAA 58.855 50.000 8.43 0.00 0.00 2.24
1809 3382 6.512297 GCCCCAATTTCGTGTATCATTAATT 58.488 36.000 0.00 0.00 0.00 1.40
1865 3452 3.883744 CTCCAGTTTCGCGCCCAGT 62.884 63.158 0.00 0.00 0.00 4.00
1915 3529 4.870991 CGGGGAGACTGAAAACTCTATTTC 59.129 45.833 0.00 0.00 39.28 2.17
1919 3533 5.280521 GGAGACTGAAAACTCTATTTCCCCA 60.281 44.000 0.00 0.00 38.30 4.96
2050 4028 1.019278 GGAGATTTGCCGCTCGTTCA 61.019 55.000 0.00 0.00 31.95 3.18
2060 4039 1.394917 CCGCTCGTTCAGAAATTCAGG 59.605 52.381 0.00 0.00 0.00 3.86
2146 4132 2.935238 GCTTCAGTTTCGTGCCCATCTA 60.935 50.000 0.00 0.00 0.00 1.98
2240 4250 9.367160 TGGAGGAAGAAAATAATCAAAGACTTT 57.633 29.630 0.00 0.00 0.00 2.66
2263 4274 2.191128 ATTCCATATTCAGGCGCTCC 57.809 50.000 7.64 0.00 0.00 4.70
2342 4353 4.530857 GACATGTCGGAGCGGGGG 62.531 72.222 10.69 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.737376 GTTGGTGTCGCCGGAGAC 60.737 66.667 29.10 29.10 41.21 3.36
29 30 3.998672 GGTTGGTGTCGCCGGAGA 61.999 66.667 5.05 3.81 41.21 3.71
32 33 4.939368 TTGGGTTGGTGTCGCCGG 62.939 66.667 0.00 0.00 41.21 6.13
33 34 2.671619 ATTGGGTTGGTGTCGCCG 60.672 61.111 0.00 0.00 41.21 6.46
34 35 2.686816 CGATTGGGTTGGTGTCGCC 61.687 63.158 0.00 0.00 37.90 5.54
35 36 2.686816 CCGATTGGGTTGGTGTCGC 61.687 63.158 0.00 0.00 0.00 5.19
36 37 3.573558 CCGATTGGGTTGGTGTCG 58.426 61.111 0.00 0.00 0.00 4.35
46 47 0.734889 GAGATGTTGTGCCCGATTGG 59.265 55.000 0.00 0.00 37.09 3.16
47 48 0.734889 GGAGATGTTGTGCCCGATTG 59.265 55.000 0.00 0.00 0.00 2.67
48 49 0.744414 CGGAGATGTTGTGCCCGATT 60.744 55.000 0.00 0.00 42.49 3.34
49 50 1.153369 CGGAGATGTTGTGCCCGAT 60.153 57.895 0.00 0.00 42.49 4.18
50 51 1.822114 TTCGGAGATGTTGTGCCCGA 61.822 55.000 0.00 0.00 46.18 5.14
51 52 0.953471 TTTCGGAGATGTTGTGCCCG 60.953 55.000 0.00 0.00 41.36 6.13
52 53 1.243902 TTTTCGGAGATGTTGTGCCC 58.756 50.000 0.00 0.00 35.04 5.36
53 54 2.867429 CATTTTCGGAGATGTTGTGCC 58.133 47.619 0.00 0.00 35.04 5.01
54 55 2.253603 GCATTTTCGGAGATGTTGTGC 58.746 47.619 0.00 0.00 35.04 4.57
55 56 2.415893 GGGCATTTTCGGAGATGTTGTG 60.416 50.000 0.00 0.00 35.04 3.33
56 57 1.818674 GGGCATTTTCGGAGATGTTGT 59.181 47.619 0.00 0.00 35.04 3.32
57 58 1.202177 CGGGCATTTTCGGAGATGTTG 60.202 52.381 0.00 0.00 35.04 3.33
58 59 1.094785 CGGGCATTTTCGGAGATGTT 58.905 50.000 0.00 0.00 35.04 2.71
59 60 2.780595 CGGGCATTTTCGGAGATGT 58.219 52.632 0.00 0.00 35.04 3.06
66 67 0.875728 TTGTGTACCGGGCATTTTCG 59.124 50.000 6.32 0.00 0.00 3.46
67 68 2.352323 CCTTTGTGTACCGGGCATTTTC 60.352 50.000 6.32 0.00 0.00 2.29
68 69 1.616374 CCTTTGTGTACCGGGCATTTT 59.384 47.619 6.32 0.00 0.00 1.82
69 70 1.253100 CCTTTGTGTACCGGGCATTT 58.747 50.000 6.32 0.00 0.00 2.32
70 71 0.610785 CCCTTTGTGTACCGGGCATT 60.611 55.000 6.32 0.00 0.00 3.56
71 72 1.001393 CCCTTTGTGTACCGGGCAT 60.001 57.895 6.32 0.00 0.00 4.40
72 73 2.432563 CCCTTTGTGTACCGGGCA 59.567 61.111 6.32 0.60 0.00 5.36
73 74 2.360726 CCCCTTTGTGTACCGGGC 60.361 66.667 6.32 0.00 35.29 6.13
74 75 2.353573 CCCCCTTTGTGTACCGGG 59.646 66.667 6.32 0.00 36.42 5.73
88 89 3.873812 CCCGTACATGCCTCCCCC 61.874 72.222 0.00 0.00 0.00 5.40
89 90 2.113243 GATCCCGTACATGCCTCCCC 62.113 65.000 0.00 0.00 0.00 4.81
90 91 1.371558 GATCCCGTACATGCCTCCC 59.628 63.158 0.00 0.00 0.00 4.30
91 92 1.006102 CGATCCCGTACATGCCTCC 60.006 63.158 0.00 0.00 0.00 4.30
92 93 4.655527 CGATCCCGTACATGCCTC 57.344 61.111 0.00 0.00 0.00 4.70
124 125 3.850095 GATCTACCTGCTCGCCGCC 62.850 68.421 0.00 0.00 38.05 6.13
125 126 2.355244 GATCTACCTGCTCGCCGC 60.355 66.667 0.00 0.00 39.77 6.53
126 127 1.007964 CAGATCTACCTGCTCGCCG 60.008 63.158 0.00 0.00 0.00 6.46
127 128 0.031449 GACAGATCTACCTGCTCGCC 59.969 60.000 0.00 0.00 37.68 5.54
128 129 0.317436 CGACAGATCTACCTGCTCGC 60.317 60.000 0.00 0.00 37.68 5.03
129 130 1.003331 GTCGACAGATCTACCTGCTCG 60.003 57.143 11.55 0.00 38.16 5.03
130 131 2.289547 GAGTCGACAGATCTACCTGCTC 59.710 54.545 19.50 0.00 37.68 4.26
131 132 2.092646 AGAGTCGACAGATCTACCTGCT 60.093 50.000 19.50 0.00 37.68 4.24
132 133 2.289547 GAGAGTCGACAGATCTACCTGC 59.710 54.545 19.50 0.00 37.68 4.85
133 134 2.542178 CGAGAGTCGACAGATCTACCTG 59.458 54.545 19.50 0.00 43.74 4.00
134 135 2.484065 CCGAGAGTCGACAGATCTACCT 60.484 54.545 19.50 1.25 43.74 3.08
135 136 1.868498 CCGAGAGTCGACAGATCTACC 59.132 57.143 19.50 0.53 43.74 3.18
136 137 1.262151 GCCGAGAGTCGACAGATCTAC 59.738 57.143 19.50 5.69 43.74 2.59
137 138 1.134491 TGCCGAGAGTCGACAGATCTA 60.134 52.381 19.50 0.00 43.74 1.98
138 139 0.393132 TGCCGAGAGTCGACAGATCT 60.393 55.000 19.50 12.04 43.74 2.75
139 140 0.665835 ATGCCGAGAGTCGACAGATC 59.334 55.000 19.50 11.13 43.74 2.75
140 141 0.383590 CATGCCGAGAGTCGACAGAT 59.616 55.000 19.50 2.20 43.74 2.90
141 142 1.657751 CCATGCCGAGAGTCGACAGA 61.658 60.000 19.50 0.00 43.74 3.41
142 143 1.226802 CCATGCCGAGAGTCGACAG 60.227 63.158 19.50 5.87 43.74 3.51
143 144 2.710902 CCCATGCCGAGAGTCGACA 61.711 63.158 19.50 0.00 43.74 4.35
144 145 2.105128 CCCATGCCGAGAGTCGAC 59.895 66.667 7.70 7.70 43.74 4.20
145 146 3.147595 CCCCATGCCGAGAGTCGA 61.148 66.667 0.00 0.00 43.74 4.20
146 147 4.899239 GCCCCATGCCGAGAGTCG 62.899 72.222 0.00 0.00 40.07 4.18
147 148 4.899239 CGCCCCATGCCGAGAGTC 62.899 72.222 0.00 0.00 36.24 3.36
205 206 4.835891 ACCTACTCCCCCTCGCCG 62.836 72.222 0.00 0.00 0.00 6.46
206 207 3.155167 CACCTACTCCCCCTCGCC 61.155 72.222 0.00 0.00 0.00 5.54
207 208 3.155167 CCACCTACTCCCCCTCGC 61.155 72.222 0.00 0.00 0.00 5.03
208 209 2.444140 CCCACCTACTCCCCCTCG 60.444 72.222 0.00 0.00 0.00 4.63
209 210 2.040779 CCCCACCTACTCCCCCTC 60.041 72.222 0.00 0.00 0.00 4.30
210 211 2.542541 TCCCCACCTACTCCCCCT 60.543 66.667 0.00 0.00 0.00 4.79
211 212 2.040779 CTCCCCACCTACTCCCCC 60.041 72.222 0.00 0.00 0.00 5.40
212 213 2.040779 CCTCCCCACCTACTCCCC 60.041 72.222 0.00 0.00 0.00 4.81
213 214 1.075151 CTCCTCCCCACCTACTCCC 60.075 68.421 0.00 0.00 0.00 4.30
214 215 0.397394 GACTCCTCCCCACCTACTCC 60.397 65.000 0.00 0.00 0.00 3.85
215 216 0.752376 CGACTCCTCCCCACCTACTC 60.752 65.000 0.00 0.00 0.00 2.59
216 217 1.306970 CGACTCCTCCCCACCTACT 59.693 63.158 0.00 0.00 0.00 2.57
217 218 2.424733 GCGACTCCTCCCCACCTAC 61.425 68.421 0.00 0.00 0.00 3.18
218 219 2.043248 GCGACTCCTCCCCACCTA 60.043 66.667 0.00 0.00 0.00 3.08
236 237 4.560856 ATGCTCTCGCTCGCGACC 62.561 66.667 3.71 0.00 44.01 4.79
237 238 3.318555 CATGCTCTCGCTCGCGAC 61.319 66.667 3.71 1.04 44.01 5.19
238 239 4.559229 CCATGCTCTCGCTCGCGA 62.559 66.667 9.26 9.26 46.87 5.87
240 241 4.521062 ACCCATGCTCTCGCTCGC 62.521 66.667 0.00 0.00 36.97 5.03
241 242 2.279120 GACCCATGCTCTCGCTCG 60.279 66.667 0.00 0.00 36.97 5.03
242 243 2.279120 CGACCCATGCTCTCGCTC 60.279 66.667 0.00 0.00 36.97 5.03
245 246 2.584418 CTGCGACCCATGCTCTCG 60.584 66.667 0.00 0.00 0.00 4.04
246 247 2.894387 GCTGCGACCCATGCTCTC 60.894 66.667 0.00 0.00 0.00 3.20
247 248 4.479993 GGCTGCGACCCATGCTCT 62.480 66.667 0.00 0.00 0.00 4.09
248 249 2.388890 ATAGGCTGCGACCCATGCTC 62.389 60.000 0.00 0.00 0.00 4.26
249 250 2.446848 ATAGGCTGCGACCCATGCT 61.447 57.895 0.00 0.00 0.00 3.79
250 251 2.111878 ATAGGCTGCGACCCATGC 59.888 61.111 0.00 0.00 0.00 4.06
251 252 2.256591 GCATAGGCTGCGACCCATG 61.257 63.158 0.00 0.00 41.97 3.66
252 253 2.111878 GCATAGGCTGCGACCCAT 59.888 61.111 0.00 0.00 41.97 4.00
263 264 0.173255 CCAACTTTTGGCCGCATAGG 59.827 55.000 0.00 0.00 45.17 2.57
264 265 3.719699 CCAACTTTTGGCCGCATAG 57.280 52.632 0.00 0.00 45.17 2.23
275 276 6.183360 GGTTAAGCAAAAGTAGGACCAACTTT 60.183 38.462 0.00 0.00 46.45 2.66
276 277 5.301045 GGTTAAGCAAAAGTAGGACCAACTT 59.699 40.000 0.00 0.00 38.82 2.66
277 278 4.825634 GGTTAAGCAAAAGTAGGACCAACT 59.174 41.667 0.00 0.00 0.00 3.16
278 279 4.319984 CGGTTAAGCAAAAGTAGGACCAAC 60.320 45.833 5.38 0.00 0.00 3.77
279 280 3.816523 CGGTTAAGCAAAAGTAGGACCAA 59.183 43.478 5.38 0.00 0.00 3.67
280 281 3.404899 CGGTTAAGCAAAAGTAGGACCA 58.595 45.455 5.38 0.00 0.00 4.02
281 282 2.745821 CCGGTTAAGCAAAAGTAGGACC 59.254 50.000 5.38 0.00 0.00 4.46
282 283 2.745821 CCCGGTTAAGCAAAAGTAGGAC 59.254 50.000 0.00 0.00 0.00 3.85
283 284 2.372837 ACCCGGTTAAGCAAAAGTAGGA 59.627 45.455 0.00 0.00 0.00 2.94
284 285 2.745821 GACCCGGTTAAGCAAAAGTAGG 59.254 50.000 0.00 0.00 0.00 3.18
285 286 3.404899 TGACCCGGTTAAGCAAAAGTAG 58.595 45.455 0.00 0.00 0.00 2.57
286 287 3.488778 TGACCCGGTTAAGCAAAAGTA 57.511 42.857 0.00 0.00 0.00 2.24
287 288 2.351706 TGACCCGGTTAAGCAAAAGT 57.648 45.000 0.00 0.00 0.00 2.66
288 289 2.882137 TCTTGACCCGGTTAAGCAAAAG 59.118 45.455 15.69 1.34 30.72 2.27
289 290 2.933573 TCTTGACCCGGTTAAGCAAAA 58.066 42.857 15.69 0.00 30.72 2.44
290 291 2.642154 TCTTGACCCGGTTAAGCAAA 57.358 45.000 15.69 0.00 30.72 3.68
291 292 2.224670 ACATCTTGACCCGGTTAAGCAA 60.225 45.455 15.69 3.61 30.72 3.91
292 293 1.349688 ACATCTTGACCCGGTTAAGCA 59.650 47.619 15.69 6.88 30.72 3.91
293 294 2.109425 ACATCTTGACCCGGTTAAGC 57.891 50.000 15.69 0.00 30.72 3.09
294 295 6.753107 AATTTACATCTTGACCCGGTTAAG 57.247 37.500 14.59 14.59 31.67 1.85
295 296 7.884354 AGTAAATTTACATCTTGACCCGGTTAA 59.116 33.333 26.06 0.00 36.12 2.01
296 297 7.396418 AGTAAATTTACATCTTGACCCGGTTA 58.604 34.615 26.06 0.00 36.12 2.85
297 298 6.243148 AGTAAATTTACATCTTGACCCGGTT 58.757 36.000 26.06 1.87 36.12 4.44
298 299 5.812286 AGTAAATTTACATCTTGACCCGGT 58.188 37.500 26.06 0.00 36.12 5.28
299 300 5.006358 CGAGTAAATTTACATCTTGACCCGG 59.994 44.000 26.06 0.00 36.12 5.73
300 301 5.579511 ACGAGTAAATTTACATCTTGACCCG 59.420 40.000 26.06 16.47 36.12 5.28
301 302 6.817140 AGACGAGTAAATTTACATCTTGACCC 59.183 38.462 26.06 8.47 36.12 4.46
302 303 7.829378 AGACGAGTAAATTTACATCTTGACC 57.171 36.000 26.06 9.64 36.12 4.02
303 304 8.521860 CGTAGACGAGTAAATTTACATCTTGAC 58.478 37.037 26.06 18.57 43.02 3.18
304 305 8.239314 ACGTAGACGAGTAAATTTACATCTTGA 58.761 33.333 26.06 11.41 43.02 3.02
305 306 8.390854 ACGTAGACGAGTAAATTTACATCTTG 57.609 34.615 26.06 20.36 43.02 3.02
314 315 5.872635 TCGATGAACGTAGACGAGTAAATT 58.127 37.500 9.41 0.00 43.02 1.82
374 375 7.109501 TCCTTTGACCAATATTTTCATCTCGA 58.890 34.615 0.00 0.00 0.00 4.04
384 385 8.987890 CGTTTGAAATTTCCTTTGACCAATATT 58.012 29.630 15.48 0.00 0.00 1.28
385 386 8.364142 TCGTTTGAAATTTCCTTTGACCAATAT 58.636 29.630 15.48 0.00 0.00 1.28
390 391 5.342259 CGATCGTTTGAAATTTCCTTTGACC 59.658 40.000 15.48 0.00 0.00 4.02
406 407 0.389296 TCATGCACGGTCGATCGTTT 60.389 50.000 23.32 6.62 41.86 3.60
412 413 3.935828 TCAAATTTATCATGCACGGTCGA 59.064 39.130 0.00 0.00 0.00 4.20
440 441 5.643379 TGTTTGGAGCTATTTTGGATGAC 57.357 39.130 0.00 0.00 0.00 3.06
443 444 6.211184 TGTTCATGTTTGGAGCTATTTTGGAT 59.789 34.615 0.00 0.00 0.00 3.41
445 446 5.634859 GTGTTCATGTTTGGAGCTATTTTGG 59.365 40.000 0.00 0.00 0.00 3.28
493 494 3.947910 AAGGAAGCACATCCATGTTTG 57.052 42.857 6.07 0.00 42.27 2.93
523 1980 8.910351 ATGGTGCTTAGATTTAAGATAAGGTC 57.090 34.615 7.19 0.00 38.88 3.85
555 2012 5.465724 GCCCACTTATTAGTTCCGTCTAATG 59.534 44.000 12.05 3.35 39.82 1.90
578 2035 6.837992 TGTTTGATTTAACACCTAATCTCGC 58.162 36.000 0.00 0.00 33.31 5.03
611 2069 7.903145 TGATAACTAGTTGTATGTGAGGTTGT 58.097 34.615 18.56 0.00 0.00 3.32
628 2086 6.372937 CAGAGATGCGACCTCTATGATAACTA 59.627 42.308 2.62 0.00 38.84 2.24
629 2087 5.182950 CAGAGATGCGACCTCTATGATAACT 59.817 44.000 2.62 0.00 38.84 2.24
675 2141 2.047844 GTGAGGCAAGCTCGAGCA 60.048 61.111 36.87 13.78 45.16 4.26
679 2145 1.069636 GTTTTCAGTGAGGCAAGCTCG 60.070 52.381 0.00 0.00 0.00 5.03
683 2149 3.378112 TCAACAGTTTTCAGTGAGGCAAG 59.622 43.478 0.00 0.00 0.00 4.01
687 2153 4.319766 CCGAATCAACAGTTTTCAGTGAGG 60.320 45.833 0.00 0.00 0.00 3.86
703 2169 3.119743 ACACGATAGAAACGACCGAATCA 60.120 43.478 0.00 0.00 41.38 2.57
713 2179 4.742438 TTGAGCCAAACACGATAGAAAC 57.258 40.909 0.00 0.00 41.38 2.78
723 2189 1.109609 TGTGTGCATTGAGCCAAACA 58.890 45.000 0.00 0.00 44.83 2.83
744 2210 5.062058 CACGGGATGAAATTGTATTGTTTGC 59.938 40.000 0.00 0.00 0.00 3.68
770 2271 2.233431 TGCCAACAAAAACAGTTCTGCT 59.767 40.909 0.00 0.00 0.00 4.24
771 2272 2.615869 TGCCAACAAAAACAGTTCTGC 58.384 42.857 0.00 0.00 0.00 4.26
772 2273 4.268405 GTGATGCCAACAAAAACAGTTCTG 59.732 41.667 0.00 0.00 0.00 3.02
774 2275 4.180057 TGTGATGCCAACAAAAACAGTTC 58.820 39.130 0.00 0.00 0.00 3.01
775 2276 4.183101 CTGTGATGCCAACAAAAACAGTT 58.817 39.130 0.00 0.00 33.34 3.16
776 2277 3.784338 CTGTGATGCCAACAAAAACAGT 58.216 40.909 0.00 0.00 33.34 3.55
875 2378 4.563782 AGTATTTATTTCGAGGGGAGGGA 58.436 43.478 0.00 0.00 0.00 4.20
889 2392 6.926272 GGAGACGAGATTTGCAGAGTATTTAT 59.074 38.462 0.00 0.00 0.00 1.40
899 2402 1.945819 GCCAAGGAGACGAGATTTGCA 60.946 52.381 0.00 0.00 0.00 4.08
975 2480 0.253327 GCTGGAGAAAGGAATCGGGT 59.747 55.000 0.00 0.00 0.00 5.28
981 2486 1.296715 GGCGAGCTGGAGAAAGGAA 59.703 57.895 0.00 0.00 0.00 3.36
1468 2987 4.576330 ACAGCCTAACTAAGCAAGGAAT 57.424 40.909 0.00 0.00 31.64 3.01
1574 3110 8.231304 AGCAACTTATTGTTTCATTGAAATCG 57.769 30.769 14.54 3.78 38.17 3.34
1602 3138 9.986833 TGAAACACAGATCGAATAAAATGTATG 57.013 29.630 0.00 0.00 0.00 2.39
1656 3198 6.065976 ACATGGGTGATAACAATTCTGAGA 57.934 37.500 0.00 0.00 0.00 3.27
1668 3210 5.065859 CGTAATTCAAAGCACATGGGTGATA 59.934 40.000 0.00 0.00 44.20 2.15
1674 3234 3.190327 TGGACGTAATTCAAAGCACATGG 59.810 43.478 0.00 0.00 0.00 3.66
1690 3250 4.741239 AGGCCCCTGGATGGACGT 62.741 66.667 0.00 0.00 35.39 4.34
1809 3382 6.414890 GCGGATTTTCAATTTTTCGTTTTCA 58.585 32.000 0.00 0.00 0.00 2.69
1915 3529 2.778299 TGAAATTCAGAACGAGTGGGG 58.222 47.619 0.00 0.00 0.00 4.96
2050 4028 4.401925 CAAACTCCCAGACCTGAATTTCT 58.598 43.478 0.00 0.00 0.00 2.52
2060 4039 2.359975 CCCGCCAAACTCCCAGAC 60.360 66.667 0.00 0.00 0.00 3.51
2146 4132 3.306502 CCAAGATTGCAAAAGGATGTGCT 60.307 43.478 1.71 0.00 41.48 4.40
2240 4250 3.554934 AGCGCCTGAATATGGAATTCAA 58.445 40.909 2.29 0.00 37.55 2.69
2263 4274 1.569493 CGCCACCGTGAGTTTCTTG 59.431 57.895 0.00 0.00 0.00 3.02
2342 4353 4.133796 GTGCTTCAATGGCCCGGC 62.134 66.667 0.00 0.00 0.00 6.13
2343 4354 0.466189 ATAGTGCTTCAATGGCCCGG 60.466 55.000 0.00 0.00 0.00 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.