Multiple sequence alignment - TraesCS6A01G116900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G116900 chr6A 100.000 2618 0 0 1 2618 87498218 87495601 0.000000e+00 4835.0
1 TraesCS6A01G116900 chr6A 88.285 939 63 12 860 1780 87312409 87311500 0.000000e+00 1081.0
2 TraesCS6A01G116900 chr6D 94.275 1275 53 8 517 1780 69299554 69298289 0.000000e+00 1932.0
3 TraesCS6A01G116900 chr6D 91.318 956 56 11 841 1780 69271071 69270127 0.000000e+00 1280.0
4 TraesCS6A01G116900 chr6D 90.017 591 36 9 1809 2381 352903543 352904128 0.000000e+00 743.0
5 TraesCS6A01G116900 chr6D 82.398 659 44 26 1777 2375 410114425 410115071 2.320000e-140 508.0
6 TraesCS6A01G116900 chr6D 88.308 325 19 5 1780 2088 352902757 352903078 3.180000e-99 372.0
7 TraesCS6A01G116900 chr6B 94.806 1213 45 8 581 1780 144372686 144371479 0.000000e+00 1875.0
8 TraesCS6A01G116900 chr5A 97.196 428 9 3 1 427 556585840 556586265 0.000000e+00 721.0
9 TraesCS6A01G116900 chr5A 96.905 420 12 1 1 420 201396927 201397345 0.000000e+00 702.0
10 TraesCS6A01G116900 chr5A 95.962 421 15 2 1 421 680200267 680200685 0.000000e+00 682.0
11 TraesCS6A01G116900 chr5A 84.146 164 23 2 2455 2616 447141817 447141655 3.490000e-34 156.0
12 TraesCS6A01G116900 chr7A 97.375 419 11 0 1 419 44759471 44759889 0.000000e+00 713.0
13 TraesCS6A01G116900 chr7A 84.855 449 42 18 1931 2373 729274246 729274674 1.860000e-116 429.0
14 TraesCS6A01G116900 chr7A 93.407 91 6 0 1787 1877 729273548 729273638 4.540000e-28 135.0
15 TraesCS6A01G116900 chr2A 95.755 424 17 1 1 423 120227193 120226770 0.000000e+00 682.0
16 TraesCS6A01G116900 chr2A 76.375 491 71 30 1779 2238 125223655 125223179 3.390000e-54 222.0
17 TraesCS6A01G116900 chr3B 95.059 425 16 2 1 420 508248707 508248283 0.000000e+00 664.0
18 TraesCS6A01G116900 chr3B 83.026 542 87 3 1094 1631 51062673 51062133 1.090000e-133 486.0
19 TraesCS6A01G116900 chr5D 94.811 424 21 1 1 423 433994823 433994400 0.000000e+00 660.0
20 TraesCS6A01G116900 chr1B 94.601 426 21 2 1 425 429964812 429964388 0.000000e+00 658.0
21 TraesCS6A01G116900 chr2D 94.131 426 21 4 1 425 587276854 587277276 0.000000e+00 645.0
22 TraesCS6A01G116900 chr7B 84.713 628 56 16 1780 2375 600497121 600497740 2.240000e-165 592.0
23 TraesCS6A01G116900 chr3D 83.360 625 58 22 1780 2374 584569430 584568822 1.070000e-148 536.0
24 TraesCS6A01G116900 chr3D 83.537 164 25 1 2455 2616 113327176 113327339 4.510000e-33 152.0
25 TraesCS6A01G116900 chr3D 86.765 68 5 3 2554 2618 73850883 73850817 3.610000e-09 73.1
26 TraesCS6A01G116900 chr3D 86.765 68 5 3 2554 2618 76233637 76233703 3.610000e-09 73.1
27 TraesCS6A01G116900 chr4B 81.729 613 66 21 1782 2375 273987406 273987991 1.100000e-128 470.0
28 TraesCS6A01G116900 chr4B 82.005 389 32 13 2005 2375 273989630 273989998 1.970000e-76 296.0
29 TraesCS6A01G116900 chr4B 81.967 244 21 13 2005 2229 273991639 273991878 4.450000e-43 185.0
30 TraesCS6A01G116900 chr3A 89.835 364 23 3 2026 2375 461149872 461149509 3.070000e-124 455.0
31 TraesCS6A01G116900 chr5B 86.719 128 15 2 2108 2235 498076787 498076662 9.770000e-30 141.0
32 TraesCS6A01G116900 chr7D 81.768 181 17 7 2195 2375 634079201 634079365 1.260000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G116900 chr6A 87495601 87498218 2617 True 4835.0 4835 100.000000 1 2618 1 chr6A.!!$R2 2617
1 TraesCS6A01G116900 chr6A 87311500 87312409 909 True 1081.0 1081 88.285000 860 1780 1 chr6A.!!$R1 920
2 TraesCS6A01G116900 chr6D 69298289 69299554 1265 True 1932.0 1932 94.275000 517 1780 1 chr6D.!!$R2 1263
3 TraesCS6A01G116900 chr6D 69270127 69271071 944 True 1280.0 1280 91.318000 841 1780 1 chr6D.!!$R1 939
4 TraesCS6A01G116900 chr6D 352902757 352904128 1371 False 557.5 743 89.162500 1780 2381 2 chr6D.!!$F2 601
5 TraesCS6A01G116900 chr6D 410114425 410115071 646 False 508.0 508 82.398000 1777 2375 1 chr6D.!!$F1 598
6 TraesCS6A01G116900 chr6B 144371479 144372686 1207 True 1875.0 1875 94.806000 581 1780 1 chr6B.!!$R1 1199
7 TraesCS6A01G116900 chr7A 729273548 729274674 1126 False 282.0 429 89.131000 1787 2373 2 chr7A.!!$F2 586
8 TraesCS6A01G116900 chr3B 51062133 51062673 540 True 486.0 486 83.026000 1094 1631 1 chr3B.!!$R1 537
9 TraesCS6A01G116900 chr7B 600497121 600497740 619 False 592.0 592 84.713000 1780 2375 1 chr7B.!!$F1 595
10 TraesCS6A01G116900 chr3D 584568822 584569430 608 True 536.0 536 83.360000 1780 2374 1 chr3D.!!$R2 594
11 TraesCS6A01G116900 chr4B 273987406 273991878 4472 False 317.0 470 81.900333 1782 2375 3 chr4B.!!$F1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.035458 CAGGAGGCCGAAAAGTCACT 59.965 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 1918 1.258445 ATCACTGTCCGGGACCTGAC 61.258 60.0 23.81 6.02 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.722021 AAACAAAGTCACAAAGAACCAGT 57.278 34.783 0.00 0.00 0.00 4.00
23 24 6.827586 AAACAAAGTCACAAAGAACCAGTA 57.172 33.333 0.00 0.00 0.00 2.74
24 25 6.436843 AACAAAGTCACAAAGAACCAGTAG 57.563 37.500 0.00 0.00 0.00 2.57
25 26 4.335594 ACAAAGTCACAAAGAACCAGTAGC 59.664 41.667 0.00 0.00 0.00 3.58
26 27 3.838244 AGTCACAAAGAACCAGTAGCA 57.162 42.857 0.00 0.00 0.00 3.49
27 28 4.150897 AGTCACAAAGAACCAGTAGCAA 57.849 40.909 0.00 0.00 0.00 3.91
28 29 4.523083 AGTCACAAAGAACCAGTAGCAAA 58.477 39.130 0.00 0.00 0.00 3.68
29 30 4.947388 AGTCACAAAGAACCAGTAGCAAAA 59.053 37.500 0.00 0.00 0.00 2.44
30 31 5.417580 AGTCACAAAGAACCAGTAGCAAAAA 59.582 36.000 0.00 0.00 0.00 1.94
31 32 5.743872 GTCACAAAGAACCAGTAGCAAAAAG 59.256 40.000 0.00 0.00 0.00 2.27
32 33 5.650266 TCACAAAGAACCAGTAGCAAAAAGA 59.350 36.000 0.00 0.00 0.00 2.52
33 34 6.151985 TCACAAAGAACCAGTAGCAAAAAGAA 59.848 34.615 0.00 0.00 0.00 2.52
34 35 6.980397 CACAAAGAACCAGTAGCAAAAAGAAT 59.020 34.615 0.00 0.00 0.00 2.40
35 36 7.168135 CACAAAGAACCAGTAGCAAAAAGAATC 59.832 37.037 0.00 0.00 0.00 2.52
36 37 6.959639 AAGAACCAGTAGCAAAAAGAATCA 57.040 33.333 0.00 0.00 0.00 2.57
37 38 7.530426 AAGAACCAGTAGCAAAAAGAATCAT 57.470 32.000 0.00 0.00 0.00 2.45
38 39 7.150783 AGAACCAGTAGCAAAAAGAATCATC 57.849 36.000 0.00 0.00 0.00 2.92
39 40 6.944862 AGAACCAGTAGCAAAAAGAATCATCT 59.055 34.615 0.00 0.00 37.57 2.90
40 41 8.103305 AGAACCAGTAGCAAAAAGAATCATCTA 58.897 33.333 0.00 0.00 33.77 1.98
41 42 8.635765 AACCAGTAGCAAAAAGAATCATCTAA 57.364 30.769 0.00 0.00 33.77 2.10
42 43 8.635765 ACCAGTAGCAAAAAGAATCATCTAAA 57.364 30.769 0.00 0.00 33.77 1.85
43 44 9.077885 ACCAGTAGCAAAAAGAATCATCTAAAA 57.922 29.630 0.00 0.00 33.77 1.52
44 45 9.912634 CCAGTAGCAAAAAGAATCATCTAAAAA 57.087 29.630 0.00 0.00 33.77 1.94
60 61 9.201989 TCATCTAAAAAGAATACTCCTAGCTCA 57.798 33.333 0.00 0.00 0.00 4.26
61 62 9.823647 CATCTAAAAAGAATACTCCTAGCTCAA 57.176 33.333 0.00 0.00 0.00 3.02
70 71 8.536175 AGAATACTCCTAGCTCAAATTATAGGC 58.464 37.037 0.00 0.00 35.71 3.93
71 72 7.798710 ATACTCCTAGCTCAAATTATAGGCA 57.201 36.000 0.00 0.00 35.71 4.75
72 73 6.500589 ACTCCTAGCTCAAATTATAGGCAA 57.499 37.500 0.00 0.00 35.71 4.52
73 74 7.084268 ACTCCTAGCTCAAATTATAGGCAAT 57.916 36.000 0.00 0.00 35.71 3.56
74 75 7.164803 ACTCCTAGCTCAAATTATAGGCAATC 58.835 38.462 0.00 0.00 35.71 2.67
75 76 7.017056 ACTCCTAGCTCAAATTATAGGCAATCT 59.983 37.037 0.00 0.00 35.71 2.40
76 77 8.435931 TCCTAGCTCAAATTATAGGCAATCTA 57.564 34.615 0.00 0.00 35.71 1.98
77 78 8.535335 TCCTAGCTCAAATTATAGGCAATCTAG 58.465 37.037 0.00 0.00 35.71 2.43
78 79 8.317679 CCTAGCTCAAATTATAGGCAATCTAGT 58.682 37.037 0.00 0.00 0.00 2.57
79 80 7.976135 AGCTCAAATTATAGGCAATCTAGTG 57.024 36.000 0.00 0.00 0.00 2.74
80 81 7.739825 AGCTCAAATTATAGGCAATCTAGTGA 58.260 34.615 0.00 0.00 0.00 3.41
81 82 8.381636 AGCTCAAATTATAGGCAATCTAGTGAT 58.618 33.333 0.00 0.00 33.70 3.06
82 83 9.007901 GCTCAAATTATAGGCAATCTAGTGATT 57.992 33.333 0.00 0.00 43.10 2.57
91 92 7.951347 AGGCAATCTAGTGATTTGAGAAAAT 57.049 32.000 0.00 0.00 40.61 1.82
92 93 8.358582 AGGCAATCTAGTGATTTGAGAAAATT 57.641 30.769 0.00 0.00 40.61 1.82
93 94 8.465201 AGGCAATCTAGTGATTTGAGAAAATTC 58.535 33.333 0.00 0.00 40.61 2.17
94 95 8.246180 GGCAATCTAGTGATTTGAGAAAATTCA 58.754 33.333 0.00 0.00 40.61 2.57
95 96 9.798994 GCAATCTAGTGATTTGAGAAAATTCAT 57.201 29.630 0.00 0.00 40.61 2.57
131 132 9.750125 AATTCAAACTTCCAAATCTAGTCAAAC 57.250 29.630 0.00 0.00 0.00 2.93
132 133 8.519799 TTCAAACTTCCAAATCTAGTCAAACT 57.480 30.769 0.00 0.00 0.00 2.66
133 134 8.519799 TCAAACTTCCAAATCTAGTCAAACTT 57.480 30.769 0.00 0.00 0.00 2.66
134 135 8.405531 TCAAACTTCCAAATCTAGTCAAACTTG 58.594 33.333 0.00 0.00 0.00 3.16
135 136 8.405531 CAAACTTCCAAATCTAGTCAAACTTGA 58.594 33.333 0.00 0.00 34.71 3.02
136 137 8.697507 AACTTCCAAATCTAGTCAAACTTGAT 57.302 30.769 0.00 0.00 41.26 2.57
137 138 9.793259 AACTTCCAAATCTAGTCAAACTTGATA 57.207 29.630 4.82 0.00 39.20 2.15
138 139 9.965902 ACTTCCAAATCTAGTCAAACTTGATAT 57.034 29.630 4.82 0.00 39.20 1.63
152 153 9.996554 TCAAACTTGATATCTACAGAAACTTCA 57.003 29.630 3.98 0.00 31.01 3.02
238 239 8.691661 TGAATTTTCTAAAAAGTAGAGCAGGT 57.308 30.769 0.00 0.00 0.00 4.00
239 240 8.567948 TGAATTTTCTAAAAAGTAGAGCAGGTG 58.432 33.333 0.00 0.00 0.00 4.00
240 241 8.465273 AATTTTCTAAAAAGTAGAGCAGGTGT 57.535 30.769 0.00 0.00 0.00 4.16
241 242 7.875327 TTTTCTAAAAAGTAGAGCAGGTGTT 57.125 32.000 0.00 0.00 0.00 3.32
242 243 6.861065 TTCTAAAAAGTAGAGCAGGTGTTG 57.139 37.500 0.00 0.00 0.00 3.33
243 244 5.305585 TCTAAAAAGTAGAGCAGGTGTTGG 58.694 41.667 0.00 0.00 0.00 3.77
244 245 1.897560 AAAGTAGAGCAGGTGTTGGC 58.102 50.000 0.00 0.00 0.00 4.52
245 246 0.036875 AAGTAGAGCAGGTGTTGGCC 59.963 55.000 0.00 0.00 0.00 5.36
246 247 1.741770 GTAGAGCAGGTGTTGGCCG 60.742 63.158 0.00 0.00 0.00 6.13
247 248 1.911269 TAGAGCAGGTGTTGGCCGA 60.911 57.895 0.00 0.00 0.00 5.54
248 249 1.476845 TAGAGCAGGTGTTGGCCGAA 61.477 55.000 0.00 0.00 0.00 4.30
249 250 2.281761 AGCAGGTGTTGGCCGAAG 60.282 61.111 0.00 0.00 0.00 3.79
250 251 2.281484 GCAGGTGTTGGCCGAAGA 60.281 61.111 0.00 0.00 0.00 2.87
251 252 2.328099 GCAGGTGTTGGCCGAAGAG 61.328 63.158 0.00 0.00 0.00 2.85
252 253 1.672356 CAGGTGTTGGCCGAAGAGG 60.672 63.158 0.00 0.00 44.97 3.69
253 254 2.359975 GGTGTTGGCCGAAGAGGG 60.360 66.667 0.00 0.00 41.48 4.30
254 255 2.747686 GTGTTGGCCGAAGAGGGA 59.252 61.111 0.00 0.00 41.48 4.20
255 256 1.671379 GTGTTGGCCGAAGAGGGAC 60.671 63.158 0.00 0.00 41.48 4.46
270 271 3.421567 GGACTCTTTGGCCAACTGT 57.578 52.632 20.35 16.85 45.54 3.55
271 272 1.692411 GGACTCTTTGGCCAACTGTT 58.308 50.000 20.35 2.67 45.54 3.16
272 273 1.338020 GGACTCTTTGGCCAACTGTTG 59.662 52.381 20.35 13.50 45.54 3.33
281 282 3.568093 CCAACTGTTGGCCGAAAAG 57.432 52.632 25.21 0.00 45.17 2.27
282 283 0.744281 CCAACTGTTGGCCGAAAAGT 59.256 50.000 25.21 0.00 45.17 2.66
283 284 1.269051 CCAACTGTTGGCCGAAAAGTC 60.269 52.381 25.21 0.00 45.17 3.01
284 285 1.029681 AACTGTTGGCCGAAAAGTCC 58.970 50.000 9.54 0.00 0.00 3.85
285 286 0.822121 ACTGTTGGCCGAAAAGTCCC 60.822 55.000 0.00 0.00 0.00 4.46
286 287 0.537371 CTGTTGGCCGAAAAGTCCCT 60.537 55.000 0.00 0.00 0.00 4.20
287 288 0.536460 TGTTGGCCGAAAAGTCCCTC 60.536 55.000 0.00 0.00 0.00 4.30
288 289 0.250770 GTTGGCCGAAAAGTCCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
289 290 0.476771 TTGGCCGAAAAGTCCCTCTT 59.523 50.000 0.00 0.00 38.10 2.85
290 291 0.036306 TGGCCGAAAAGTCCCTCTTC 59.964 55.000 0.00 0.00 35.02 2.87
291 292 1.019805 GGCCGAAAAGTCCCTCTTCG 61.020 60.000 0.00 0.00 41.18 3.79
293 294 2.457080 CGAAAAGTCCCTCTTCGGC 58.543 57.895 0.00 0.00 38.57 5.54
294 295 1.019805 CGAAAAGTCCCTCTTCGGCC 61.020 60.000 0.00 0.00 38.57 6.13
295 296 0.036306 GAAAAGTCCCTCTTCGGCCA 59.964 55.000 2.24 0.00 35.02 5.36
296 297 0.476771 AAAAGTCCCTCTTCGGCCAA 59.523 50.000 2.24 0.00 35.02 4.52
297 298 0.250770 AAAGTCCCTCTTCGGCCAAC 60.251 55.000 2.24 0.00 35.02 3.77
298 299 1.415672 AAGTCCCTCTTCGGCCAACA 61.416 55.000 2.24 0.00 0.00 3.33
299 300 1.376037 GTCCCTCTTCGGCCAACAG 60.376 63.158 2.24 0.00 0.00 3.16
300 301 2.045926 CCCTCTTCGGCCAACAGG 60.046 66.667 2.24 1.33 0.00 4.00
301 302 2.592993 CCCTCTTCGGCCAACAGGA 61.593 63.158 2.24 0.00 0.00 3.86
302 303 1.078848 CCTCTTCGGCCAACAGGAG 60.079 63.158 2.24 0.69 0.00 3.69
303 304 1.078848 CTCTTCGGCCAACAGGAGG 60.079 63.158 2.24 0.00 0.00 4.30
309 310 2.282180 GCCAACAGGAGGCCGAAA 60.282 61.111 0.00 0.00 46.50 3.46
310 311 1.901464 GCCAACAGGAGGCCGAAAA 60.901 57.895 0.00 0.00 46.50 2.29
311 312 1.866853 GCCAACAGGAGGCCGAAAAG 61.867 60.000 0.00 0.00 46.50 2.27
312 313 0.537371 CCAACAGGAGGCCGAAAAGT 60.537 55.000 0.00 0.00 0.00 2.66
313 314 0.875059 CAACAGGAGGCCGAAAAGTC 59.125 55.000 0.00 0.00 0.00 3.01
314 315 0.472471 AACAGGAGGCCGAAAAGTCA 59.528 50.000 0.00 0.00 0.00 3.41
315 316 0.250338 ACAGGAGGCCGAAAAGTCAC 60.250 55.000 0.00 0.00 0.00 3.67
316 317 0.035458 CAGGAGGCCGAAAAGTCACT 59.965 55.000 0.00 0.00 0.00 3.41
317 318 0.765510 AGGAGGCCGAAAAGTCACTT 59.234 50.000 0.00 0.00 0.00 3.16
318 319 1.143073 AGGAGGCCGAAAAGTCACTTT 59.857 47.619 0.00 0.00 34.94 2.66
319 320 1.954382 GGAGGCCGAAAAGTCACTTTT 59.046 47.619 15.62 15.62 44.92 2.27
326 327 3.430333 GAAAAGTCACTTTTCGGCCAA 57.570 42.857 23.89 0.00 45.96 4.52
327 328 2.863401 AAAGTCACTTTTCGGCCAAC 57.137 45.000 2.24 0.00 28.27 3.77
328 329 1.757682 AAGTCACTTTTCGGCCAACA 58.242 45.000 2.24 0.00 0.00 3.33
329 330 1.757682 AGTCACTTTTCGGCCAACAA 58.242 45.000 2.24 0.00 0.00 2.83
330 331 1.676006 AGTCACTTTTCGGCCAACAAG 59.324 47.619 2.24 3.17 0.00 3.16
331 332 1.673920 GTCACTTTTCGGCCAACAAGA 59.326 47.619 2.24 0.00 0.00 3.02
332 333 1.946768 TCACTTTTCGGCCAACAAGAG 59.053 47.619 2.24 0.00 0.00 2.85
333 334 1.001378 CACTTTTCGGCCAACAAGAGG 60.001 52.381 2.24 0.00 0.00 3.69
339 340 3.423154 GCCAACAAGAGGCCGACG 61.423 66.667 0.00 0.00 46.50 5.12
340 341 2.742372 CCAACAAGAGGCCGACGG 60.742 66.667 10.29 10.29 0.00 4.79
341 342 2.742372 CAACAAGAGGCCGACGGG 60.742 66.667 17.22 0.00 0.00 5.28
342 343 4.016706 AACAAGAGGCCGACGGGG 62.017 66.667 17.22 0.00 39.58 5.73
344 345 4.760047 CAAGAGGCCGACGGGGTG 62.760 72.222 17.22 0.00 38.44 4.61
346 347 4.779733 AGAGGCCGACGGGGTGAT 62.780 66.667 17.22 0.00 38.44 3.06
347 348 2.836360 GAGGCCGACGGGGTGATA 60.836 66.667 17.22 0.00 38.44 2.15
348 349 3.148031 GAGGCCGACGGGGTGATAC 62.148 68.421 17.22 0.00 38.44 2.24
349 350 3.152400 GGCCGACGGGGTGATACT 61.152 66.667 17.22 0.00 38.44 2.12
350 351 2.728435 GGCCGACGGGGTGATACTT 61.728 63.158 17.22 0.00 38.44 2.24
351 352 1.219935 GCCGACGGGGTGATACTTT 59.780 57.895 17.22 0.00 38.44 2.66
352 353 0.392060 GCCGACGGGGTGATACTTTT 60.392 55.000 17.22 0.00 38.44 2.27
353 354 1.365699 CCGACGGGGTGATACTTTTG 58.634 55.000 5.81 0.00 0.00 2.44
354 355 1.066716 CCGACGGGGTGATACTTTTGA 60.067 52.381 5.81 0.00 0.00 2.69
355 356 2.419574 CCGACGGGGTGATACTTTTGAT 60.420 50.000 5.81 0.00 0.00 2.57
356 357 3.267483 CGACGGGGTGATACTTTTGATT 58.733 45.455 0.00 0.00 0.00 2.57
357 358 3.687698 CGACGGGGTGATACTTTTGATTT 59.312 43.478 0.00 0.00 0.00 2.17
358 359 4.155280 CGACGGGGTGATACTTTTGATTTT 59.845 41.667 0.00 0.00 0.00 1.82
359 360 5.335348 CGACGGGGTGATACTTTTGATTTTT 60.335 40.000 0.00 0.00 0.00 1.94
360 361 6.020971 ACGGGGTGATACTTTTGATTTTTC 57.979 37.500 0.00 0.00 0.00 2.29
361 362 5.773176 ACGGGGTGATACTTTTGATTTTTCT 59.227 36.000 0.00 0.00 0.00 2.52
362 363 6.072119 ACGGGGTGATACTTTTGATTTTTCTC 60.072 38.462 0.00 0.00 0.00 2.87
363 364 6.625081 CGGGGTGATACTTTTGATTTTTCTCC 60.625 42.308 0.00 0.00 0.00 3.71
364 365 6.210584 GGGGTGATACTTTTGATTTTTCTCCA 59.789 38.462 0.00 0.00 0.00 3.86
365 366 7.093333 GGGGTGATACTTTTGATTTTTCTCCAT 60.093 37.037 0.00 0.00 0.00 3.41
366 367 8.314021 GGGTGATACTTTTGATTTTTCTCCATT 58.686 33.333 0.00 0.00 0.00 3.16
367 368 9.143631 GGTGATACTTTTGATTTTTCTCCATTG 57.856 33.333 0.00 0.00 0.00 2.82
368 369 9.143631 GTGATACTTTTGATTTTTCTCCATTGG 57.856 33.333 0.00 0.00 0.00 3.16
369 370 8.313292 TGATACTTTTGATTTTTCTCCATTGGG 58.687 33.333 2.09 0.00 0.00 4.12
370 371 5.868454 ACTTTTGATTTTTCTCCATTGGGG 58.132 37.500 2.09 0.00 38.37 4.96
371 372 5.369404 ACTTTTGATTTTTCTCCATTGGGGT 59.631 36.000 1.63 0.00 38.11 4.95
372 373 4.888326 TTGATTTTTCTCCATTGGGGTG 57.112 40.909 1.63 0.00 38.11 4.61
373 374 3.855668 TGATTTTTCTCCATTGGGGTGT 58.144 40.909 1.63 0.00 38.11 4.16
374 375 5.004361 TGATTTTTCTCCATTGGGGTGTA 57.996 39.130 1.63 0.00 38.11 2.90
375 376 5.588845 TGATTTTTCTCCATTGGGGTGTAT 58.411 37.500 1.63 0.00 38.11 2.29
376 377 6.736581 TGATTTTTCTCCATTGGGGTGTATA 58.263 36.000 1.63 0.00 38.11 1.47
377 378 6.833416 TGATTTTTCTCCATTGGGGTGTATAG 59.167 38.462 1.63 0.00 38.11 1.31
378 379 5.789574 TTTTCTCCATTGGGGTGTATAGT 57.210 39.130 1.63 0.00 38.11 2.12
379 380 5.789574 TTTCTCCATTGGGGTGTATAGTT 57.210 39.130 1.63 0.00 38.11 2.24
380 381 5.789574 TTCTCCATTGGGGTGTATAGTTT 57.210 39.130 1.63 0.00 38.11 2.66
381 382 5.367945 TCTCCATTGGGGTGTATAGTTTC 57.632 43.478 1.63 0.00 38.11 2.78
382 383 5.036916 TCTCCATTGGGGTGTATAGTTTCT 58.963 41.667 1.63 0.00 38.11 2.52
383 384 5.104527 TCTCCATTGGGGTGTATAGTTTCTG 60.105 44.000 1.63 0.00 38.11 3.02
384 385 4.785914 TCCATTGGGGTGTATAGTTTCTGA 59.214 41.667 2.09 0.00 38.11 3.27
385 386 5.251932 TCCATTGGGGTGTATAGTTTCTGAA 59.748 40.000 2.09 0.00 38.11 3.02
386 387 6.069088 TCCATTGGGGTGTATAGTTTCTGAAT 60.069 38.462 2.09 0.00 38.11 2.57
387 388 6.607198 CCATTGGGGTGTATAGTTTCTGAATT 59.393 38.462 0.00 0.00 0.00 2.17
388 389 7.124147 CCATTGGGGTGTATAGTTTCTGAATTT 59.876 37.037 0.00 0.00 0.00 1.82
389 390 7.461182 TTGGGGTGTATAGTTTCTGAATTTG 57.539 36.000 0.00 0.00 0.00 2.32
390 391 6.548321 TGGGGTGTATAGTTTCTGAATTTGT 58.452 36.000 0.00 0.00 0.00 2.83
391 392 7.007723 TGGGGTGTATAGTTTCTGAATTTGTT 58.992 34.615 0.00 0.00 0.00 2.83
392 393 8.164733 TGGGGTGTATAGTTTCTGAATTTGTTA 58.835 33.333 0.00 0.00 0.00 2.41
393 394 9.185680 GGGGTGTATAGTTTCTGAATTTGTTAT 57.814 33.333 0.00 0.00 0.00 1.89
438 439 5.774498 AAAAATCTAGGAATCCAATCGCC 57.226 39.130 0.61 0.00 0.00 5.54
439 440 3.425162 AATCTAGGAATCCAATCGCCC 57.575 47.619 0.61 0.00 0.00 6.13
440 441 2.103153 TCTAGGAATCCAATCGCCCT 57.897 50.000 0.61 0.00 0.00 5.19
441 442 1.971357 TCTAGGAATCCAATCGCCCTC 59.029 52.381 0.61 0.00 0.00 4.30
442 443 1.694150 CTAGGAATCCAATCGCCCTCA 59.306 52.381 0.61 0.00 0.00 3.86
443 444 1.143813 AGGAATCCAATCGCCCTCAT 58.856 50.000 0.61 0.00 0.00 2.90
444 445 1.202855 AGGAATCCAATCGCCCTCATG 60.203 52.381 0.61 0.00 0.00 3.07
445 446 0.595095 GAATCCAATCGCCCTCATGC 59.405 55.000 0.00 0.00 0.00 4.06
446 447 0.184451 AATCCAATCGCCCTCATGCT 59.816 50.000 0.00 0.00 0.00 3.79
447 448 0.536687 ATCCAATCGCCCTCATGCTG 60.537 55.000 0.00 0.00 0.00 4.41
448 449 1.153107 CCAATCGCCCTCATGCTGA 60.153 57.895 0.00 0.00 0.00 4.26
449 450 0.536687 CCAATCGCCCTCATGCTGAT 60.537 55.000 0.00 0.00 0.00 2.90
450 451 1.271001 CCAATCGCCCTCATGCTGATA 60.271 52.381 0.00 0.00 0.00 2.15
451 452 2.617276 CCAATCGCCCTCATGCTGATAT 60.617 50.000 0.00 0.00 0.00 1.63
452 453 3.079578 CAATCGCCCTCATGCTGATATT 58.920 45.455 0.00 0.00 0.00 1.28
453 454 2.936919 TCGCCCTCATGCTGATATTT 57.063 45.000 0.00 0.00 0.00 1.40
454 455 3.213206 TCGCCCTCATGCTGATATTTT 57.787 42.857 0.00 0.00 0.00 1.82
455 456 3.141398 TCGCCCTCATGCTGATATTTTC 58.859 45.455 0.00 0.00 0.00 2.29
456 457 2.096069 CGCCCTCATGCTGATATTTTCG 60.096 50.000 0.00 0.00 0.00 3.46
457 458 2.351157 GCCCTCATGCTGATATTTTCGC 60.351 50.000 0.00 0.00 0.00 4.70
458 459 2.227388 CCCTCATGCTGATATTTTCGCC 59.773 50.000 0.00 0.00 0.00 5.54
459 460 2.880268 CCTCATGCTGATATTTTCGCCA 59.120 45.455 0.00 0.00 0.00 5.69
460 461 3.058432 CCTCATGCTGATATTTTCGCCAG 60.058 47.826 0.00 0.00 0.00 4.85
462 463 3.444657 GCTGATATTTTCGCCAGCG 57.555 52.632 5.50 5.50 41.86 5.18
463 464 0.658536 GCTGATATTTTCGCCAGCGC 60.659 55.000 7.27 0.00 41.86 5.92
481 482 2.897972 GTCCCCAGACGGCGTTAT 59.102 61.111 16.19 2.86 32.18 1.89
482 483 1.219935 GTCCCCAGACGGCGTTATT 59.780 57.895 16.19 0.00 32.18 1.40
483 484 0.392060 GTCCCCAGACGGCGTTATTT 60.392 55.000 16.19 0.00 32.18 1.40
484 485 0.108041 TCCCCAGACGGCGTTATTTC 60.108 55.000 16.19 0.00 0.00 2.17
485 486 0.391927 CCCCAGACGGCGTTATTTCA 60.392 55.000 16.19 0.00 0.00 2.69
486 487 1.444836 CCCAGACGGCGTTATTTCAA 58.555 50.000 16.19 0.00 0.00 2.69
487 488 1.396996 CCCAGACGGCGTTATTTCAAG 59.603 52.381 16.19 0.00 0.00 3.02
488 489 2.073816 CCAGACGGCGTTATTTCAAGT 58.926 47.619 16.19 0.00 0.00 3.16
489 490 2.093783 CCAGACGGCGTTATTTCAAGTC 59.906 50.000 16.19 0.00 0.00 3.01
490 491 2.093783 CAGACGGCGTTATTTCAAGTCC 59.906 50.000 16.19 0.00 0.00 3.85
491 492 1.060122 GACGGCGTTATTTCAAGTCCG 59.940 52.381 16.19 0.00 40.98 4.79
492 493 0.372334 CGGCGTTATTTCAAGTCCGG 59.628 55.000 0.00 0.00 32.55 5.14
493 494 1.729284 GGCGTTATTTCAAGTCCGGA 58.271 50.000 0.00 0.00 0.00 5.14
494 495 1.664151 GGCGTTATTTCAAGTCCGGAG 59.336 52.381 3.06 0.00 0.00 4.63
513 514 3.093278 CCGAACGGCTCAAGATGC 58.907 61.111 0.00 0.00 0.00 3.91
514 515 1.448540 CCGAACGGCTCAAGATGCT 60.449 57.895 0.00 0.00 0.00 3.79
515 516 1.699656 CCGAACGGCTCAAGATGCTG 61.700 60.000 0.00 0.00 42.11 4.41
519 520 2.472695 ACGGCTCAAGATGCTGTTAA 57.527 45.000 0.00 0.00 46.56 2.01
522 523 3.002791 CGGCTCAAGATGCTGTTAAAGA 58.997 45.455 0.00 0.00 32.57 2.52
548 549 0.038618 TAGGGTAGCGTATGCATGCG 60.039 55.000 29.62 29.62 46.23 4.73
549 550 1.594293 GGGTAGCGTATGCATGCGT 60.594 57.895 32.56 22.74 46.23 5.24
550 551 1.564622 GGTAGCGTATGCATGCGTG 59.435 57.895 32.56 11.59 46.23 5.34
575 576 1.502231 CACGTGAGGGTCTTCAACTG 58.498 55.000 10.90 0.00 0.00 3.16
579 580 2.673833 GTGAGGGTCTTCAACTGTACG 58.326 52.381 0.00 0.00 0.00 3.67
703 704 7.998964 CCCTCATCCAACCTGTTAAACTATAAT 59.001 37.037 0.00 0.00 0.00 1.28
800 801 1.493950 CGATTGCCATGTCCGCTCTC 61.494 60.000 0.00 0.00 0.00 3.20
814 820 1.597445 CGCTCTCGAGTATTTCCGGAC 60.597 57.143 13.13 0.00 38.10 4.79
852 858 3.935828 GCTAGCAGGGTAAGAACAAAGAG 59.064 47.826 10.63 0.00 0.00 2.85
854 860 1.464997 GCAGGGTAAGAACAAAGAGCG 59.535 52.381 0.00 0.00 0.00 5.03
1091 1111 1.858041 CCGCTGTCATCATCATCGC 59.142 57.895 0.00 0.00 0.00 4.58
1224 1244 0.894184 TCTCCCTGAAGCTCGTCGTT 60.894 55.000 0.00 0.00 0.00 3.85
1473 1493 4.742201 CTGGAGGTGGCGGTCACG 62.742 72.222 6.65 0.00 46.96 4.35
1516 1536 2.877168 CAGCTGAAGAAGAACAAGCTGT 59.123 45.455 8.42 0.00 42.06 4.40
1638 1667 5.803020 AGTTAATTTGCTAGCTACTGTGC 57.197 39.130 17.23 1.97 0.00 4.57
1664 1693 6.007936 TGTATGGTTTTCATCCAAAGTTCG 57.992 37.500 0.00 0.00 38.52 3.95
1867 1918 0.250124 TTGGTGGCGACCTTGTGTAG 60.250 55.000 19.42 0.00 43.58 2.74
1876 1945 1.275573 GACCTTGTGTAGTCAGGTCCC 59.724 57.143 6.34 0.00 42.18 4.46
1888 1957 1.078528 AGGTCCCGGACAGTGATCA 59.921 57.895 19.43 0.00 33.68 2.92
1936 2006 0.121197 AGGATTCCTTCCCACCCTCA 59.879 55.000 0.00 0.00 46.81 3.86
1988 3352 0.818938 GACTCCTTTCTCCCCTCGAC 59.181 60.000 0.00 0.00 0.00 4.20
1989 3353 0.410270 ACTCCTTTCTCCCCTCGACT 59.590 55.000 0.00 0.00 0.00 4.18
1990 3354 0.820871 CTCCTTTCTCCCCTCGACTG 59.179 60.000 0.00 0.00 0.00 3.51
1991 3355 1.219393 CCTTTCTCCCCTCGACTGC 59.781 63.158 0.00 0.00 0.00 4.40
1992 3356 1.544825 CCTTTCTCCCCTCGACTGCA 61.545 60.000 0.00 0.00 0.00 4.41
2096 5475 3.412408 GCCTCCCCTTGGTCCTCC 61.412 72.222 0.00 0.00 0.00 4.30
2113 5492 1.381872 CCCCTCCTGATCCAGTCGT 60.382 63.158 0.00 0.00 0.00 4.34
2226 5635 1.692121 CCTCCTCCATCAAGCTCCTCT 60.692 57.143 0.00 0.00 0.00 3.69
2262 5671 9.778993 CGATCTGATATGTTCTTGATTTGTTTT 57.221 29.630 0.00 0.00 0.00 2.43
2285 5709 4.887071 TCTTTACACTGCAGAACCAAACAT 59.113 37.500 23.35 0.00 0.00 2.71
2289 5713 7.987750 TTACACTGCAGAACCAAACATAATA 57.012 32.000 23.35 0.00 0.00 0.98
2296 5720 7.731054 TGCAGAACCAAACATAATAAGGTTTT 58.269 30.769 0.00 0.00 42.26 2.43
2334 5759 5.071250 TGTTACAGTGTGTAATCAGTTCCCT 59.929 40.000 5.88 0.00 43.74 4.20
2340 5765 6.485313 CAGTGTGTAATCAGTTCCCTTTTACA 59.515 38.462 0.00 0.00 32.10 2.41
2375 5800 3.815401 CTCATCGAAACAAACACCTCCTT 59.185 43.478 0.00 0.00 0.00 3.36
2376 5801 3.563808 TCATCGAAACAAACACCTCCTTG 59.436 43.478 0.00 0.00 0.00 3.61
2390 5815 4.178545 CCTCCTTGGTTGCAACTATTTG 57.821 45.455 27.64 14.88 35.62 2.32
2391 5816 3.826157 CCTCCTTGGTTGCAACTATTTGA 59.174 43.478 27.64 16.73 34.24 2.69
2392 5817 4.280677 CCTCCTTGGTTGCAACTATTTGAA 59.719 41.667 27.64 6.81 34.24 2.69
2393 5818 5.221422 CCTCCTTGGTTGCAACTATTTGAAA 60.221 40.000 27.64 6.08 34.24 2.69
2395 5820 6.825610 TCCTTGGTTGCAACTATTTGAAATT 58.174 32.000 27.64 0.00 32.52 1.82
2397 5822 7.226325 TCCTTGGTTGCAACTATTTGAAATTTG 59.774 33.333 27.64 0.00 32.52 2.32
2398 5823 6.297694 TGGTTGCAACTATTTGAAATTTGC 57.702 33.333 27.64 16.40 42.37 3.68
2403 5828 6.889494 TGCAACTATTTGAAATTTGCATGTG 58.111 32.000 20.13 2.87 45.70 3.21
2405 5830 7.012138 TGCAACTATTTGAAATTTGCATGTGTT 59.988 29.630 20.13 2.84 45.70 3.32
2406 5831 8.494347 GCAACTATTTGAAATTTGCATGTGTTA 58.506 29.630 17.70 0.00 41.77 2.41
2409 5834 9.709495 ACTATTTGAAATTTGCATGTGTTATGT 57.291 25.926 0.00 0.00 0.00 2.29
2412 5837 7.418840 TTGAAATTTGCATGTGTTATGTTCC 57.581 32.000 0.00 0.00 0.00 3.62
2413 5838 5.931146 TGAAATTTGCATGTGTTATGTTCCC 59.069 36.000 0.00 0.00 0.00 3.97
2414 5839 3.951775 TTTGCATGTGTTATGTTCCCC 57.048 42.857 0.00 0.00 0.00 4.81
2415 5840 2.593925 TGCATGTGTTATGTTCCCCA 57.406 45.000 0.00 0.00 0.00 4.96
2416 5841 3.098774 TGCATGTGTTATGTTCCCCAT 57.901 42.857 0.00 0.00 37.58 4.00
2417 5842 3.439154 TGCATGTGTTATGTTCCCCATT 58.561 40.909 0.00 0.00 34.86 3.16
2418 5843 3.837146 TGCATGTGTTATGTTCCCCATTT 59.163 39.130 0.00 0.00 34.86 2.32
2419 5844 4.285517 TGCATGTGTTATGTTCCCCATTTT 59.714 37.500 0.00 0.00 34.86 1.82
2420 5845 5.221803 TGCATGTGTTATGTTCCCCATTTTT 60.222 36.000 0.00 0.00 34.86 1.94
2442 5867 7.452880 TTTTTGCTACAAGATGTGAATAGCT 57.547 32.000 0.00 0.00 31.46 3.32
2443 5868 8.560355 TTTTTGCTACAAGATGTGAATAGCTA 57.440 30.769 0.00 0.00 31.46 3.32
2445 5870 6.715347 TGCTACAAGATGTGAATAGCTAGA 57.285 37.500 0.00 0.00 31.46 2.43
2447 5872 7.374272 TGCTACAAGATGTGAATAGCTAGATC 58.626 38.462 0.00 0.84 31.46 2.75
2449 5874 6.398234 ACAAGATGTGAATAGCTAGATCGT 57.602 37.500 0.00 0.00 0.00 3.73
2450 5875 7.511959 ACAAGATGTGAATAGCTAGATCGTA 57.488 36.000 0.00 0.00 0.00 3.43
2451 5876 7.589395 ACAAGATGTGAATAGCTAGATCGTAG 58.411 38.462 0.00 0.00 0.00 3.51
2454 5879 5.690997 TGTGAATAGCTAGATCGTAGTGG 57.309 43.478 0.00 0.00 0.00 4.00
2455 5880 4.519350 TGTGAATAGCTAGATCGTAGTGGG 59.481 45.833 0.00 0.00 0.00 4.61
2456 5881 4.760715 GTGAATAGCTAGATCGTAGTGGGA 59.239 45.833 0.00 0.00 0.00 4.37
2457 5882 5.241064 GTGAATAGCTAGATCGTAGTGGGAA 59.759 44.000 0.00 0.00 0.00 3.97
2458 5883 5.831525 TGAATAGCTAGATCGTAGTGGGAAA 59.168 40.000 0.00 0.00 0.00 3.13
2460 5885 6.919775 ATAGCTAGATCGTAGTGGGAAATT 57.080 37.500 0.00 0.00 0.00 1.82
2462 5887 4.649674 AGCTAGATCGTAGTGGGAAATTCA 59.350 41.667 0.00 0.00 0.00 2.57
2463 5888 4.745620 GCTAGATCGTAGTGGGAAATTCAC 59.254 45.833 0.00 0.00 35.51 3.18
2465 5890 5.422214 AGATCGTAGTGGGAAATTCACTT 57.578 39.130 3.85 0.00 42.17 3.16
2466 5891 5.805728 AGATCGTAGTGGGAAATTCACTTT 58.194 37.500 3.85 0.00 42.17 2.66
2467 5892 5.643777 AGATCGTAGTGGGAAATTCACTTTG 59.356 40.000 3.85 0.00 42.17 2.77
2468 5893 4.069304 TCGTAGTGGGAAATTCACTTTGG 58.931 43.478 3.85 0.00 42.17 3.28
2469 5894 3.818773 CGTAGTGGGAAATTCACTTTGGT 59.181 43.478 3.85 0.00 42.17 3.67
2470 5895 4.320202 CGTAGTGGGAAATTCACTTTGGTG 60.320 45.833 3.85 0.00 42.17 4.17
2471 5896 2.365293 AGTGGGAAATTCACTTTGGTGC 59.635 45.455 0.00 0.00 42.17 5.01
2472 5897 2.102252 GTGGGAAATTCACTTTGGTGCA 59.898 45.455 0.00 0.00 42.72 4.57
2474 5899 3.198635 TGGGAAATTCACTTTGGTGCAAA 59.801 39.130 0.00 0.00 42.72 3.68
2501 5926 6.618287 GCACATGCACCTATTGTCTAAATA 57.382 37.500 0.00 0.00 41.59 1.40
2502 5927 7.206981 GCACATGCACCTATTGTCTAAATAT 57.793 36.000 0.00 0.00 41.59 1.28
2503 5928 8.322906 GCACATGCACCTATTGTCTAAATATA 57.677 34.615 0.00 0.00 41.59 0.86
2504 5929 8.230486 GCACATGCACCTATTGTCTAAATATAC 58.770 37.037 0.00 0.00 41.59 1.47
2505 5930 9.271828 CACATGCACCTATTGTCTAAATATACA 57.728 33.333 0.00 0.00 0.00 2.29
2552 5977 2.711978 AAAATCCCGCCTCTAAGTCC 57.288 50.000 0.00 0.00 0.00 3.85
2553 5978 0.464452 AAATCCCGCCTCTAAGTCCG 59.536 55.000 0.00 0.00 0.00 4.79
2555 5980 2.294170 ATCCCGCCTCTAAGTCCGGA 62.294 60.000 0.00 0.00 43.20 5.14
2556 5981 2.783288 CCCGCCTCTAAGTCCGGAC 61.783 68.421 27.67 27.67 43.20 4.79
2557 5982 2.050350 CCGCCTCTAAGTCCGGACA 61.050 63.158 35.00 15.81 43.20 4.02
2559 5984 0.460311 CGCCTCTAAGTCCGGACATT 59.540 55.000 35.00 25.77 0.00 2.71
2561 5986 2.296471 CGCCTCTAAGTCCGGACATTAT 59.704 50.000 35.00 20.06 0.00 1.28
2563 5988 4.158025 CGCCTCTAAGTCCGGACATTATAT 59.842 45.833 35.00 11.85 0.00 0.86
2564 5989 5.411781 GCCTCTAAGTCCGGACATTATATG 58.588 45.833 35.00 18.26 0.00 1.78
2565 5990 5.411781 CCTCTAAGTCCGGACATTATATGC 58.588 45.833 35.00 6.06 0.00 3.14
2567 5992 3.746045 AAGTCCGGACATTATATGCGT 57.254 42.857 35.00 8.65 0.00 5.24
2568 5993 3.026630 AGTCCGGACATTATATGCGTG 57.973 47.619 35.00 0.00 0.00 5.34
2570 5995 3.570975 AGTCCGGACATTATATGCGTGTA 59.429 43.478 35.00 0.00 0.00 2.90
2571 5996 3.671928 GTCCGGACATTATATGCGTGTAC 59.328 47.826 29.75 0.00 0.00 2.90
2572 5997 2.991190 CCGGACATTATATGCGTGTACC 59.009 50.000 0.00 0.00 0.00 3.34
2573 5998 3.553302 CCGGACATTATATGCGTGTACCA 60.553 47.826 0.00 0.00 0.00 3.25
2574 5999 4.052608 CGGACATTATATGCGTGTACCAA 58.947 43.478 0.00 0.00 0.00 3.67
2576 6001 5.054477 GGACATTATATGCGTGTACCAAGT 58.946 41.667 0.00 0.00 0.00 3.16
2578 6003 6.037830 GGACATTATATGCGTGTACCAAGTTT 59.962 38.462 0.00 0.00 0.00 2.66
2580 6005 5.705813 TTATATGCGTGTACCAAGTTTCG 57.294 39.130 0.00 0.00 0.00 3.46
2581 6006 2.157834 ATGCGTGTACCAAGTTTCGA 57.842 45.000 0.00 0.00 0.00 3.71
2584 6009 2.063266 GCGTGTACCAAGTTTCGATCA 58.937 47.619 0.00 0.00 0.00 2.92
2585 6010 2.477375 GCGTGTACCAAGTTTCGATCAA 59.523 45.455 0.00 0.00 0.00 2.57
2586 6011 3.059461 GCGTGTACCAAGTTTCGATCAAA 60.059 43.478 0.00 0.00 0.00 2.69
2587 6012 4.553156 GCGTGTACCAAGTTTCGATCAAAA 60.553 41.667 0.00 0.00 0.00 2.44
2588 6013 5.503498 CGTGTACCAAGTTTCGATCAAAAA 58.497 37.500 0.00 0.00 0.00 1.94
2589 6014 5.619607 CGTGTACCAAGTTTCGATCAAAAAG 59.380 40.000 0.00 0.00 0.00 2.27
2591 6016 5.823570 TGTACCAAGTTTCGATCAAAAAGGA 59.176 36.000 0.00 0.00 0.00 3.36
2592 6017 5.183014 ACCAAGTTTCGATCAAAAAGGAC 57.817 39.130 0.00 0.00 0.00 3.85
2593 6018 4.642885 ACCAAGTTTCGATCAAAAAGGACA 59.357 37.500 0.00 0.00 0.00 4.02
2594 6019 5.301805 ACCAAGTTTCGATCAAAAAGGACAT 59.698 36.000 0.00 0.00 0.00 3.06
2597 6022 7.224557 CCAAGTTTCGATCAAAAAGGACATTTT 59.775 33.333 0.00 0.00 43.04 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.163652 GCTACTGGTTCTTTGTGACTTTGTT 60.164 40.000 0.00 0.00 0.00 2.83
2 3 4.335594 GCTACTGGTTCTTTGTGACTTTGT 59.664 41.667 0.00 0.00 0.00 2.83
3 4 4.335315 TGCTACTGGTTCTTTGTGACTTTG 59.665 41.667 0.00 0.00 0.00 2.77
4 5 4.523083 TGCTACTGGTTCTTTGTGACTTT 58.477 39.130 0.00 0.00 0.00 2.66
5 6 4.150897 TGCTACTGGTTCTTTGTGACTT 57.849 40.909 0.00 0.00 0.00 3.01
6 7 3.838244 TGCTACTGGTTCTTTGTGACT 57.162 42.857 0.00 0.00 0.00 3.41
7 8 4.893424 TTTGCTACTGGTTCTTTGTGAC 57.107 40.909 0.00 0.00 0.00 3.67
8 9 5.650266 TCTTTTTGCTACTGGTTCTTTGTGA 59.350 36.000 0.00 0.00 0.00 3.58
9 10 5.890334 TCTTTTTGCTACTGGTTCTTTGTG 58.110 37.500 0.00 0.00 0.00 3.33
10 11 6.524101 TTCTTTTTGCTACTGGTTCTTTGT 57.476 33.333 0.00 0.00 0.00 2.83
11 12 7.202526 TGATTCTTTTTGCTACTGGTTCTTTG 58.797 34.615 0.00 0.00 0.00 2.77
12 13 7.346751 TGATTCTTTTTGCTACTGGTTCTTT 57.653 32.000 0.00 0.00 0.00 2.52
13 14 6.959639 TGATTCTTTTTGCTACTGGTTCTT 57.040 33.333 0.00 0.00 0.00 2.52
14 15 6.944862 AGATGATTCTTTTTGCTACTGGTTCT 59.055 34.615 0.00 0.00 0.00 3.01
15 16 7.150783 AGATGATTCTTTTTGCTACTGGTTC 57.849 36.000 0.00 0.00 0.00 3.62
16 17 8.635765 TTAGATGATTCTTTTTGCTACTGGTT 57.364 30.769 0.00 0.00 33.17 3.67
17 18 8.635765 TTTAGATGATTCTTTTTGCTACTGGT 57.364 30.769 0.00 0.00 33.17 4.00
18 19 9.912634 TTTTTAGATGATTCTTTTTGCTACTGG 57.087 29.630 0.00 0.00 33.17 4.00
34 35 9.201989 TGAGCTAGGAGTATTCTTTTTAGATGA 57.798 33.333 0.00 0.00 0.00 2.92
35 36 9.823647 TTGAGCTAGGAGTATTCTTTTTAGATG 57.176 33.333 0.00 0.00 0.00 2.90
44 45 8.536175 GCCTATAATTTGAGCTAGGAGTATTCT 58.464 37.037 0.00 0.00 33.93 2.40
45 46 8.314751 TGCCTATAATTTGAGCTAGGAGTATTC 58.685 37.037 0.00 0.00 33.93 1.75
46 47 8.207350 TGCCTATAATTTGAGCTAGGAGTATT 57.793 34.615 0.00 0.00 33.93 1.89
47 48 7.798710 TGCCTATAATTTGAGCTAGGAGTAT 57.201 36.000 0.00 0.00 33.93 2.12
48 49 7.612065 TTGCCTATAATTTGAGCTAGGAGTA 57.388 36.000 0.00 0.00 33.93 2.59
49 50 6.500589 TTGCCTATAATTTGAGCTAGGAGT 57.499 37.500 0.00 0.00 33.93 3.85
50 51 7.393216 AGATTGCCTATAATTTGAGCTAGGAG 58.607 38.462 0.00 0.00 33.93 3.69
51 52 7.321717 AGATTGCCTATAATTTGAGCTAGGA 57.678 36.000 0.00 0.00 33.93 2.94
52 53 8.317679 ACTAGATTGCCTATAATTTGAGCTAGG 58.682 37.037 0.00 0.00 34.97 3.02
53 54 9.149225 CACTAGATTGCCTATAATTTGAGCTAG 57.851 37.037 0.00 0.00 0.00 3.42
54 55 8.870116 TCACTAGATTGCCTATAATTTGAGCTA 58.130 33.333 0.00 0.00 0.00 3.32
55 56 7.739825 TCACTAGATTGCCTATAATTTGAGCT 58.260 34.615 0.00 0.00 0.00 4.09
56 57 7.969536 TCACTAGATTGCCTATAATTTGAGC 57.030 36.000 0.00 0.00 0.00 4.26
65 66 9.638176 ATTTTCTCAAATCACTAGATTGCCTAT 57.362 29.630 0.00 0.00 43.52 2.57
66 67 9.466497 AATTTTCTCAAATCACTAGATTGCCTA 57.534 29.630 0.00 0.00 43.52 3.93
67 68 7.951347 ATTTTCTCAAATCACTAGATTGCCT 57.049 32.000 0.00 0.00 43.52 4.75
68 69 8.246180 TGAATTTTCTCAAATCACTAGATTGCC 58.754 33.333 0.00 0.00 43.52 4.52
69 70 9.798994 ATGAATTTTCTCAAATCACTAGATTGC 57.201 29.630 0.00 0.00 43.52 3.56
105 106 9.750125 GTTTGACTAGATTTGGAAGTTTGAATT 57.250 29.630 0.00 0.00 0.00 2.17
106 107 9.136323 AGTTTGACTAGATTTGGAAGTTTGAAT 57.864 29.630 0.00 0.00 0.00 2.57
107 108 8.519799 AGTTTGACTAGATTTGGAAGTTTGAA 57.480 30.769 0.00 0.00 0.00 2.69
108 109 8.405531 CAAGTTTGACTAGATTTGGAAGTTTGA 58.594 33.333 0.00 0.00 0.00 2.69
109 110 8.405531 TCAAGTTTGACTAGATTTGGAAGTTTG 58.594 33.333 0.00 0.00 31.01 2.93
110 111 8.519799 TCAAGTTTGACTAGATTTGGAAGTTT 57.480 30.769 0.00 0.00 31.01 2.66
111 112 8.697507 ATCAAGTTTGACTAGATTTGGAAGTT 57.302 30.769 0.00 0.00 40.49 2.66
112 113 9.965902 ATATCAAGTTTGACTAGATTTGGAAGT 57.034 29.630 0.00 0.00 40.49 3.01
126 127 9.996554 TGAAGTTTCTGTAGATATCAAGTTTGA 57.003 29.630 5.32 0.00 42.14 2.69
212 213 9.301897 ACCTGCTCTACTTTTTAGAAAATTCAT 57.698 29.630 0.00 0.00 0.00 2.57
213 214 8.567948 CACCTGCTCTACTTTTTAGAAAATTCA 58.432 33.333 0.00 0.00 0.00 2.57
214 215 8.568794 ACACCTGCTCTACTTTTTAGAAAATTC 58.431 33.333 0.00 0.00 0.00 2.17
215 216 8.465273 ACACCTGCTCTACTTTTTAGAAAATT 57.535 30.769 0.00 0.00 0.00 1.82
216 217 8.352942 CAACACCTGCTCTACTTTTTAGAAAAT 58.647 33.333 0.00 0.00 0.00 1.82
217 218 7.201785 CCAACACCTGCTCTACTTTTTAGAAAA 60.202 37.037 0.00 0.00 0.00 2.29
218 219 6.262273 CCAACACCTGCTCTACTTTTTAGAAA 59.738 38.462 0.00 0.00 0.00 2.52
219 220 5.763204 CCAACACCTGCTCTACTTTTTAGAA 59.237 40.000 0.00 0.00 0.00 2.10
220 221 5.305585 CCAACACCTGCTCTACTTTTTAGA 58.694 41.667 0.00 0.00 0.00 2.10
221 222 4.083271 GCCAACACCTGCTCTACTTTTTAG 60.083 45.833 0.00 0.00 0.00 1.85
222 223 3.818773 GCCAACACCTGCTCTACTTTTTA 59.181 43.478 0.00 0.00 0.00 1.52
223 224 2.623416 GCCAACACCTGCTCTACTTTTT 59.377 45.455 0.00 0.00 0.00 1.94
224 225 2.230660 GCCAACACCTGCTCTACTTTT 58.769 47.619 0.00 0.00 0.00 2.27
225 226 1.545651 GGCCAACACCTGCTCTACTTT 60.546 52.381 0.00 0.00 0.00 2.66
226 227 0.036875 GGCCAACACCTGCTCTACTT 59.963 55.000 0.00 0.00 0.00 2.24
227 228 1.679898 GGCCAACACCTGCTCTACT 59.320 57.895 0.00 0.00 0.00 2.57
228 229 1.741770 CGGCCAACACCTGCTCTAC 60.742 63.158 2.24 0.00 0.00 2.59
229 230 1.476845 TTCGGCCAACACCTGCTCTA 61.477 55.000 2.24 0.00 0.00 2.43
230 231 2.738213 CTTCGGCCAACACCTGCTCT 62.738 60.000 2.24 0.00 0.00 4.09
231 232 2.281484 TTCGGCCAACACCTGCTC 60.281 61.111 2.24 0.00 0.00 4.26
232 233 2.281761 CTTCGGCCAACACCTGCT 60.282 61.111 2.24 0.00 0.00 4.24
233 234 2.281484 TCTTCGGCCAACACCTGC 60.281 61.111 2.24 0.00 0.00 4.85
234 235 1.672356 CCTCTTCGGCCAACACCTG 60.672 63.158 2.24 0.00 0.00 4.00
235 236 2.750350 CCTCTTCGGCCAACACCT 59.250 61.111 2.24 0.00 0.00 4.00
236 237 2.359975 CCCTCTTCGGCCAACACC 60.360 66.667 2.24 0.00 0.00 4.16
237 238 1.671379 GTCCCTCTTCGGCCAACAC 60.671 63.158 2.24 0.00 0.00 3.32
238 239 1.827399 GAGTCCCTCTTCGGCCAACA 61.827 60.000 2.24 0.00 0.00 3.33
239 240 1.079057 GAGTCCCTCTTCGGCCAAC 60.079 63.158 2.24 0.00 0.00 3.77
240 241 0.836400 AAGAGTCCCTCTTCGGCCAA 60.836 55.000 2.24 0.00 46.42 4.52
241 242 1.229209 AAGAGTCCCTCTTCGGCCA 60.229 57.895 2.24 0.00 46.42 5.36
242 243 3.715015 AAGAGTCCCTCTTCGGCC 58.285 61.111 0.00 0.00 46.42 6.13
248 249 0.402121 GTTGGCCAAAGAGTCCCTCT 59.598 55.000 22.47 0.00 43.37 3.69
249 250 0.402121 AGTTGGCCAAAGAGTCCCTC 59.598 55.000 22.47 4.06 0.00 4.30
250 251 0.111253 CAGTTGGCCAAAGAGTCCCT 59.889 55.000 22.47 8.35 0.00 4.20
251 252 0.178990 ACAGTTGGCCAAAGAGTCCC 60.179 55.000 22.47 5.74 0.00 4.46
252 253 1.338020 CAACAGTTGGCCAAAGAGTCC 59.662 52.381 22.47 6.57 0.00 3.85
253 254 1.338020 CCAACAGTTGGCCAAAGAGTC 59.662 52.381 22.47 7.42 45.17 3.36
254 255 1.402787 CCAACAGTTGGCCAAAGAGT 58.597 50.000 22.47 16.01 45.17 3.24
264 265 1.269051 GGACTTTTCGGCCAACAGTTG 60.269 52.381 2.24 6.28 0.00 3.16
265 266 1.029681 GGACTTTTCGGCCAACAGTT 58.970 50.000 2.24 0.00 0.00 3.16
266 267 0.822121 GGGACTTTTCGGCCAACAGT 60.822 55.000 2.24 4.99 0.00 3.55
267 268 0.537371 AGGGACTTTTCGGCCAACAG 60.537 55.000 2.24 1.51 27.25 3.16
268 269 0.536460 GAGGGACTTTTCGGCCAACA 60.536 55.000 2.24 0.00 41.55 3.33
269 270 0.250770 AGAGGGACTTTTCGGCCAAC 60.251 55.000 2.24 0.00 41.55 3.77
270 271 0.476771 AAGAGGGACTTTTCGGCCAA 59.523 50.000 2.24 0.00 41.55 4.52
271 272 0.036306 GAAGAGGGACTTTTCGGCCA 59.964 55.000 2.24 0.00 39.71 5.36
272 273 2.855887 GAAGAGGGACTTTTCGGCC 58.144 57.895 0.00 0.00 39.71 6.13
276 277 0.036306 TGGCCGAAGAGGGACTTTTC 59.964 55.000 0.00 0.00 44.82 2.29
277 278 0.476771 TTGGCCGAAGAGGGACTTTT 59.523 50.000 0.00 0.00 41.55 2.27
278 279 0.250770 GTTGGCCGAAGAGGGACTTT 60.251 55.000 0.00 0.00 41.55 2.66
279 280 1.375326 GTTGGCCGAAGAGGGACTT 59.625 57.895 0.00 0.00 41.55 3.01
281 282 1.376037 CTGTTGGCCGAAGAGGGAC 60.376 63.158 0.00 0.00 41.48 4.46
282 283 2.592993 CCTGTTGGCCGAAGAGGGA 61.593 63.158 17.93 0.00 40.77 4.20
283 284 2.045926 CCTGTTGGCCGAAGAGGG 60.046 66.667 17.93 5.60 40.77 4.30
284 285 1.078848 CTCCTGTTGGCCGAAGAGG 60.079 63.158 19.01 19.01 45.00 3.69
285 286 1.078848 CCTCCTGTTGGCCGAAGAG 60.079 63.158 0.00 1.31 0.00 2.85
286 287 3.068881 CCTCCTGTTGGCCGAAGA 58.931 61.111 0.00 0.00 0.00 2.87
287 288 2.747855 GCCTCCTGTTGGCCGAAG 60.748 66.667 0.00 0.00 44.32 3.79
293 294 0.537371 ACTTTTCGGCCTCCTGTTGG 60.537 55.000 0.00 0.00 0.00 3.77
294 295 0.875059 GACTTTTCGGCCTCCTGTTG 59.125 55.000 0.00 0.00 0.00 3.33
295 296 0.472471 TGACTTTTCGGCCTCCTGTT 59.528 50.000 0.00 0.00 0.00 3.16
296 297 0.250338 GTGACTTTTCGGCCTCCTGT 60.250 55.000 0.00 0.00 0.00 4.00
297 298 0.035458 AGTGACTTTTCGGCCTCCTG 59.965 55.000 0.00 0.00 0.00 3.86
298 299 0.765510 AAGTGACTTTTCGGCCTCCT 59.234 50.000 0.00 0.00 0.00 3.69
299 300 1.605753 AAAGTGACTTTTCGGCCTCC 58.394 50.000 4.45 0.00 28.27 4.30
300 301 3.269486 GAAAAGTGACTTTTCGGCCTC 57.731 47.619 28.43 11.31 45.96 4.70
307 308 2.494073 TGTTGGCCGAAAAGTGACTTTT 59.506 40.909 22.02 22.02 44.92 2.27
308 309 2.096248 TGTTGGCCGAAAAGTGACTTT 58.904 42.857 4.45 4.45 34.94 2.66
309 310 1.757682 TGTTGGCCGAAAAGTGACTT 58.242 45.000 0.00 0.00 0.00 3.01
310 311 1.676006 CTTGTTGGCCGAAAAGTGACT 59.324 47.619 14.30 0.00 0.00 3.41
311 312 1.673920 TCTTGTTGGCCGAAAAGTGAC 59.326 47.619 20.68 0.00 0.00 3.67
312 313 1.946768 CTCTTGTTGGCCGAAAAGTGA 59.053 47.619 20.68 3.98 0.00 3.41
313 314 1.001378 CCTCTTGTTGGCCGAAAAGTG 60.001 52.381 20.68 18.03 0.00 3.16
314 315 1.318576 CCTCTTGTTGGCCGAAAAGT 58.681 50.000 20.68 0.00 0.00 2.66
315 316 0.039165 GCCTCTTGTTGGCCGAAAAG 60.039 55.000 16.19 16.19 44.32 2.27
316 317 2.037871 GCCTCTTGTTGGCCGAAAA 58.962 52.632 0.00 0.00 44.32 2.29
317 318 3.758172 GCCTCTTGTTGGCCGAAA 58.242 55.556 0.00 0.00 44.32 3.46
323 324 2.742372 CCGTCGGCCTCTTGTTGG 60.742 66.667 0.00 0.00 0.00 3.77
324 325 2.742372 CCCGTCGGCCTCTTGTTG 60.742 66.667 5.50 0.00 0.00 3.33
325 326 4.016706 CCCCGTCGGCCTCTTGTT 62.017 66.667 5.50 0.00 0.00 2.83
327 328 4.760047 CACCCCGTCGGCCTCTTG 62.760 72.222 5.50 0.00 33.26 3.02
328 329 2.866523 TATCACCCCGTCGGCCTCTT 62.867 60.000 5.50 0.00 33.26 2.85
329 330 3.369410 TATCACCCCGTCGGCCTCT 62.369 63.158 5.50 0.00 33.26 3.69
330 331 2.836360 TATCACCCCGTCGGCCTC 60.836 66.667 5.50 0.00 33.26 4.70
331 332 3.152400 GTATCACCCCGTCGGCCT 61.152 66.667 5.50 0.00 33.26 5.19
332 333 2.248086 AAAGTATCACCCCGTCGGCC 62.248 60.000 5.50 0.00 33.26 6.13
333 334 0.392060 AAAAGTATCACCCCGTCGGC 60.392 55.000 5.50 0.00 33.26 5.54
334 335 1.066716 TCAAAAGTATCACCCCGTCGG 60.067 52.381 3.60 3.60 37.81 4.79
335 336 2.373540 TCAAAAGTATCACCCCGTCG 57.626 50.000 0.00 0.00 0.00 5.12
336 337 5.638596 AAAATCAAAAGTATCACCCCGTC 57.361 39.130 0.00 0.00 0.00 4.79
337 338 5.773176 AGAAAAATCAAAAGTATCACCCCGT 59.227 36.000 0.00 0.00 0.00 5.28
338 339 6.267496 AGAAAAATCAAAAGTATCACCCCG 57.733 37.500 0.00 0.00 0.00 5.73
339 340 6.210584 TGGAGAAAAATCAAAAGTATCACCCC 59.789 38.462 0.00 0.00 0.00 4.95
340 341 7.227049 TGGAGAAAAATCAAAAGTATCACCC 57.773 36.000 0.00 0.00 0.00 4.61
341 342 9.143631 CAATGGAGAAAAATCAAAAGTATCACC 57.856 33.333 0.00 0.00 0.00 4.02
342 343 9.143631 CCAATGGAGAAAAATCAAAAGTATCAC 57.856 33.333 0.00 0.00 0.00 3.06
343 344 8.313292 CCCAATGGAGAAAAATCAAAAGTATCA 58.687 33.333 0.00 0.00 0.00 2.15
344 345 7.765819 CCCCAATGGAGAAAAATCAAAAGTATC 59.234 37.037 0.00 0.00 35.39 2.24
345 346 7.237471 ACCCCAATGGAGAAAAATCAAAAGTAT 59.763 33.333 0.00 0.00 38.00 2.12
346 347 6.556874 ACCCCAATGGAGAAAAATCAAAAGTA 59.443 34.615 0.00 0.00 38.00 2.24
347 348 5.369404 ACCCCAATGGAGAAAAATCAAAAGT 59.631 36.000 0.00 0.00 38.00 2.66
348 349 5.702209 CACCCCAATGGAGAAAAATCAAAAG 59.298 40.000 0.00 0.00 38.00 2.27
349 350 5.131809 ACACCCCAATGGAGAAAAATCAAAA 59.868 36.000 0.00 0.00 38.00 2.44
350 351 4.657969 ACACCCCAATGGAGAAAAATCAAA 59.342 37.500 0.00 0.00 38.00 2.69
351 352 4.230455 ACACCCCAATGGAGAAAAATCAA 58.770 39.130 0.00 0.00 38.00 2.57
352 353 3.855668 ACACCCCAATGGAGAAAAATCA 58.144 40.909 0.00 0.00 38.00 2.57
353 354 6.833933 ACTATACACCCCAATGGAGAAAAATC 59.166 38.462 0.00 0.00 38.00 2.17
354 355 6.741724 ACTATACACCCCAATGGAGAAAAAT 58.258 36.000 0.00 0.00 38.00 1.82
355 356 6.147437 ACTATACACCCCAATGGAGAAAAA 57.853 37.500 0.00 0.00 38.00 1.94
356 357 5.789574 ACTATACACCCCAATGGAGAAAA 57.210 39.130 0.00 0.00 38.00 2.29
357 358 5.789574 AACTATACACCCCAATGGAGAAA 57.210 39.130 0.00 0.00 38.00 2.52
358 359 5.491078 AGAAACTATACACCCCAATGGAGAA 59.509 40.000 0.00 0.00 38.00 2.87
359 360 5.036916 AGAAACTATACACCCCAATGGAGA 58.963 41.667 0.00 0.00 38.00 3.71
360 361 5.104527 TCAGAAACTATACACCCCAATGGAG 60.105 44.000 0.00 0.00 38.00 3.86
361 362 4.785914 TCAGAAACTATACACCCCAATGGA 59.214 41.667 0.00 0.00 38.00 3.41
362 363 5.110814 TCAGAAACTATACACCCCAATGG 57.889 43.478 0.00 0.00 41.37 3.16
363 364 7.645058 AATTCAGAAACTATACACCCCAATG 57.355 36.000 0.00 0.00 0.00 2.82
364 365 7.673926 ACAAATTCAGAAACTATACACCCCAAT 59.326 33.333 0.00 0.00 0.00 3.16
365 366 7.007723 ACAAATTCAGAAACTATACACCCCAA 58.992 34.615 0.00 0.00 0.00 4.12
366 367 6.548321 ACAAATTCAGAAACTATACACCCCA 58.452 36.000 0.00 0.00 0.00 4.96
367 368 7.462571 AACAAATTCAGAAACTATACACCCC 57.537 36.000 0.00 0.00 0.00 4.95
416 417 4.584743 GGGCGATTGGATTCCTAGATTTTT 59.415 41.667 3.95 0.00 0.00 1.94
417 418 4.141158 AGGGCGATTGGATTCCTAGATTTT 60.141 41.667 3.95 0.00 0.00 1.82
418 419 3.395941 AGGGCGATTGGATTCCTAGATTT 59.604 43.478 3.95 0.00 0.00 2.17
419 420 2.982488 AGGGCGATTGGATTCCTAGATT 59.018 45.455 3.95 0.00 0.00 2.40
420 421 2.569404 GAGGGCGATTGGATTCCTAGAT 59.431 50.000 3.95 0.00 0.00 1.98
421 422 1.971357 GAGGGCGATTGGATTCCTAGA 59.029 52.381 3.95 0.00 0.00 2.43
422 423 1.694150 TGAGGGCGATTGGATTCCTAG 59.306 52.381 3.95 0.00 0.00 3.02
423 424 1.801242 TGAGGGCGATTGGATTCCTA 58.199 50.000 3.95 0.00 0.00 2.94
424 425 1.143813 ATGAGGGCGATTGGATTCCT 58.856 50.000 3.95 0.00 0.00 3.36
425 426 1.242076 CATGAGGGCGATTGGATTCC 58.758 55.000 0.00 0.00 0.00 3.01
426 427 0.595095 GCATGAGGGCGATTGGATTC 59.405 55.000 0.00 0.00 0.00 2.52
427 428 0.184451 AGCATGAGGGCGATTGGATT 59.816 50.000 0.00 0.00 39.27 3.01
428 429 0.536687 CAGCATGAGGGCGATTGGAT 60.537 55.000 0.00 0.00 39.69 3.41
429 430 1.153107 CAGCATGAGGGCGATTGGA 60.153 57.895 0.00 0.00 39.69 3.53
430 431 1.153107 TCAGCATGAGGGCGATTGG 60.153 57.895 0.00 0.00 42.56 3.16
431 432 4.545929 TCAGCATGAGGGCGATTG 57.454 55.556 0.00 0.00 42.56 2.67
444 445 0.658536 GCGCTGGCGAAAATATCAGC 60.659 55.000 19.31 0.85 46.32 4.26
445 446 3.444657 GCGCTGGCGAAAATATCAG 57.555 52.632 19.31 0.00 42.83 2.90
467 468 1.396996 CTTGAAATAACGCCGTCTGGG 59.603 52.381 0.00 0.00 39.58 4.45
468 469 2.073816 ACTTGAAATAACGCCGTCTGG 58.926 47.619 0.00 0.00 38.77 3.86
469 470 2.093783 GGACTTGAAATAACGCCGTCTG 59.906 50.000 0.00 0.00 0.00 3.51
470 471 2.344025 GGACTTGAAATAACGCCGTCT 58.656 47.619 0.00 0.00 0.00 4.18
471 472 1.060122 CGGACTTGAAATAACGCCGTC 59.940 52.381 0.00 0.00 33.14 4.79
472 473 1.073177 CGGACTTGAAATAACGCCGT 58.927 50.000 0.00 0.00 33.14 5.68
473 474 0.372334 CCGGACTTGAAATAACGCCG 59.628 55.000 0.00 0.00 37.20 6.46
474 475 1.664151 CTCCGGACTTGAAATAACGCC 59.336 52.381 0.00 0.00 0.00 5.68
475 476 1.664151 CCTCCGGACTTGAAATAACGC 59.336 52.381 0.00 0.00 0.00 4.84
476 477 1.664151 GCCTCCGGACTTGAAATAACG 59.336 52.381 0.00 0.00 0.00 3.18
477 478 2.014857 GGCCTCCGGACTTGAAATAAC 58.985 52.381 0.00 0.00 0.00 1.89
478 479 1.406341 CGGCCTCCGGACTTGAAATAA 60.406 52.381 0.00 0.00 44.15 1.40
479 480 0.177141 CGGCCTCCGGACTTGAAATA 59.823 55.000 0.00 0.00 44.15 1.40
480 481 1.078426 CGGCCTCCGGACTTGAAAT 60.078 57.895 0.00 0.00 44.15 2.17
481 482 2.345991 CGGCCTCCGGACTTGAAA 59.654 61.111 0.00 0.00 44.15 2.69
496 497 1.448540 AGCATCTTGAGCCGTTCGG 60.449 57.895 6.90 6.90 0.00 4.30
497 498 1.016130 ACAGCATCTTGAGCCGTTCG 61.016 55.000 0.00 0.00 0.00 3.95
498 499 1.160137 AACAGCATCTTGAGCCGTTC 58.840 50.000 0.00 0.00 26.84 3.95
499 500 2.472695 TAACAGCATCTTGAGCCGTT 57.527 45.000 0.00 0.00 36.63 4.44
500 501 2.472695 TTAACAGCATCTTGAGCCGT 57.527 45.000 0.00 0.00 0.00 5.68
501 502 3.002791 TCTTTAACAGCATCTTGAGCCG 58.997 45.455 0.00 0.00 0.00 5.52
502 503 4.397417 ACATCTTTAACAGCATCTTGAGCC 59.603 41.667 0.00 0.00 0.00 4.70
503 504 5.557891 ACATCTTTAACAGCATCTTGAGC 57.442 39.130 0.00 0.00 0.00 4.26
504 505 7.137490 TGAACATCTTTAACAGCATCTTGAG 57.863 36.000 0.00 0.00 0.00 3.02
505 506 7.692460 ATGAACATCTTTAACAGCATCTTGA 57.308 32.000 0.00 0.00 0.00 3.02
506 507 8.127327 CCTATGAACATCTTTAACAGCATCTTG 58.873 37.037 0.00 0.00 0.00 3.02
507 508 7.284034 CCCTATGAACATCTTTAACAGCATCTT 59.716 37.037 0.00 0.00 0.00 2.40
508 509 6.769822 CCCTATGAACATCTTTAACAGCATCT 59.230 38.462 0.00 0.00 0.00 2.90
509 510 6.543831 ACCCTATGAACATCTTTAACAGCATC 59.456 38.462 0.00 0.00 0.00 3.91
510 511 6.426587 ACCCTATGAACATCTTTAACAGCAT 58.573 36.000 0.00 0.00 0.00 3.79
511 512 5.815581 ACCCTATGAACATCTTTAACAGCA 58.184 37.500 0.00 0.00 0.00 4.41
512 513 6.017852 GCTACCCTATGAACATCTTTAACAGC 60.018 42.308 0.00 0.00 0.00 4.40
513 514 6.201044 CGCTACCCTATGAACATCTTTAACAG 59.799 42.308 0.00 0.00 0.00 3.16
514 515 6.046593 CGCTACCCTATGAACATCTTTAACA 58.953 40.000 0.00 0.00 0.00 2.41
515 516 6.047231 ACGCTACCCTATGAACATCTTTAAC 58.953 40.000 0.00 0.00 0.00 2.01
519 520 5.784177 CATACGCTACCCTATGAACATCTT 58.216 41.667 0.00 0.00 0.00 2.40
522 523 3.323691 TGCATACGCTACCCTATGAACAT 59.676 43.478 0.00 0.00 39.64 2.71
548 549 0.801067 GACCCTCACGTGTATCGCAC 60.801 60.000 16.51 0.00 44.19 5.34
549 550 0.963856 AGACCCTCACGTGTATCGCA 60.964 55.000 16.51 0.00 44.19 5.10
550 551 0.172803 AAGACCCTCACGTGTATCGC 59.827 55.000 16.51 4.01 44.19 4.58
551 552 1.471287 TGAAGACCCTCACGTGTATCG 59.529 52.381 16.51 4.39 46.00 2.92
552 553 3.056749 AGTTGAAGACCCTCACGTGTATC 60.057 47.826 16.51 8.97 0.00 2.24
553 554 2.897969 AGTTGAAGACCCTCACGTGTAT 59.102 45.455 16.51 0.00 0.00 2.29
564 565 3.252701 TCTGAGACGTACAGTTGAAGACC 59.747 47.826 17.63 0.00 36.81 3.85
569 570 5.509716 TTTCTTCTGAGACGTACAGTTGA 57.490 39.130 17.63 14.40 36.81 3.18
575 576 6.427150 TGCAAAATTTTCTTCTGAGACGTAC 58.573 36.000 0.00 0.00 0.00 3.67
579 580 6.733145 AGACTGCAAAATTTTCTTCTGAGAC 58.267 36.000 0.00 0.00 0.00 3.36
814 820 5.982516 CCTGCTAGCTAGTCTCAGTATTTTG 59.017 44.000 21.62 4.01 0.00 2.44
852 858 4.436986 GGAGGAACTAAAATACAGTTGCGC 60.437 45.833 0.00 0.00 45.73 6.09
854 860 5.007682 TGGGAGGAACTAAAATACAGTTGC 58.992 41.667 0.00 0.00 41.55 4.17
1516 1536 3.706373 GAGCTTGCAGGTCCCCGA 61.706 66.667 0.00 0.00 36.78 5.14
1638 1667 6.331369 ACTTTGGATGAAAACCATACAGTG 57.669 37.500 0.00 0.00 46.22 3.66
1664 1693 1.845809 CGGCCGCCATAGATTGCTTC 61.846 60.000 14.67 0.00 0.00 3.86
1750 1786 8.739039 AGATTCACCATCGAAAATCATTTTACA 58.261 29.630 0.00 0.00 36.93 2.41
1751 1787 9.573133 AAGATTCACCATCGAAAATCATTTTAC 57.427 29.630 0.00 0.00 36.93 2.01
1752 1788 9.571810 CAAGATTCACCATCGAAAATCATTTTA 57.428 29.630 0.00 0.00 36.93 1.52
1753 1789 7.546667 CCAAGATTCACCATCGAAAATCATTTT 59.453 33.333 0.00 0.00 36.93 1.82
1757 1793 4.398988 CCCAAGATTCACCATCGAAAATCA 59.601 41.667 0.00 0.00 36.93 2.57
1836 1886 2.015382 CCACCAAACGCACGTAACA 58.985 52.632 0.00 0.00 0.00 2.41
1867 1918 1.258445 ATCACTGTCCGGGACCTGAC 61.258 60.000 23.81 6.02 0.00 3.51
1876 1945 2.287069 GGTATCGACTGATCACTGTCCG 60.287 54.545 8.96 5.48 40.32 4.79
1911 1981 2.225267 GGTGGGAAGGAATCCTTTTCCA 60.225 50.000 24.32 24.32 44.82 3.53
1914 1984 2.043115 GAGGGTGGGAAGGAATCCTTTT 59.957 50.000 16.64 0.00 44.82 2.27
1991 3355 4.994201 GGCGGCGATGCATGCATG 62.994 66.667 36.73 26.64 36.70 4.06
2014 3382 2.069776 CTGGACTTGAAGGGAGGCA 58.930 57.895 0.00 0.00 0.00 4.75
2048 3416 2.820922 TCGAAGCGGGTCGATCGA 60.821 61.111 15.15 15.15 44.76 3.59
2088 5467 1.314867 GATCAGGAGGGGAGGACCA 59.685 63.158 0.00 0.00 42.91 4.02
2096 5475 1.729470 CGACGACTGGATCAGGAGGG 61.729 65.000 0.00 0.00 35.51 4.30
2262 5671 4.265893 TGTTTGGTTCTGCAGTGTAAAGA 58.734 39.130 14.67 7.31 0.00 2.52
2285 5709 8.364142 CAACACTGGAATGGAAAAACCTTATTA 58.636 33.333 0.00 0.00 39.86 0.98
2289 5713 4.469586 ACAACACTGGAATGGAAAAACCTT 59.530 37.500 0.00 0.00 39.86 3.50
2296 5720 4.578516 CACTGTAACAACACTGGAATGGAA 59.421 41.667 0.00 0.00 0.00 3.53
2334 5759 7.598118 TCGATGAGTGGTAACGTAAATGTAAAA 59.402 33.333 0.00 0.00 42.51 1.52
2340 5765 5.927689 TGTTTCGATGAGTGGTAACGTAAAT 59.072 36.000 0.00 0.00 42.51 1.40
2375 5800 6.297694 GCAAATTTCAAATAGTTGCAACCA 57.702 33.333 25.62 13.63 43.17 3.67
2383 5808 9.709495 ACATAACACATGCAAATTTCAAATAGT 57.291 25.926 0.00 0.00 0.00 2.12
2386 5811 8.505625 GGAACATAACACATGCAAATTTCAAAT 58.494 29.630 0.00 0.00 0.00 2.32
2387 5812 7.041508 GGGAACATAACACATGCAAATTTCAAA 60.042 33.333 0.00 0.00 0.00 2.69
2389 5814 5.931146 GGGAACATAACACATGCAAATTTCA 59.069 36.000 0.00 0.00 0.00 2.69
2390 5815 5.351189 GGGGAACATAACACATGCAAATTTC 59.649 40.000 0.00 0.00 0.00 2.17
2391 5816 5.221803 TGGGGAACATAACACATGCAAATTT 60.222 36.000 0.00 0.00 0.00 1.82
2392 5817 4.285517 TGGGGAACATAACACATGCAAATT 59.714 37.500 0.00 0.00 0.00 1.82
2393 5818 3.837146 TGGGGAACATAACACATGCAAAT 59.163 39.130 0.00 0.00 0.00 2.32
2395 5820 2.881734 TGGGGAACATAACACATGCAA 58.118 42.857 0.00 0.00 0.00 4.08
2397 5822 4.470334 AAATGGGGAACATAACACATGC 57.530 40.909 0.00 0.00 39.40 4.06
2418 5843 7.452880 AGCTATTCACATCTTGTAGCAAAAA 57.547 32.000 5.61 0.00 40.05 1.94
2419 5844 8.040727 TCTAGCTATTCACATCTTGTAGCAAAA 58.959 33.333 0.00 0.00 40.05 2.44
2420 5845 7.555965 TCTAGCTATTCACATCTTGTAGCAAA 58.444 34.615 0.00 0.00 40.05 3.68
2421 5846 7.112452 TCTAGCTATTCACATCTTGTAGCAA 57.888 36.000 0.00 0.00 40.05 3.91
2422 5847 6.715347 TCTAGCTATTCACATCTTGTAGCA 57.285 37.500 0.00 0.00 40.05 3.49
2423 5848 6.526325 CGATCTAGCTATTCACATCTTGTAGC 59.474 42.308 0.00 0.00 38.37 3.58
2426 5851 6.398234 ACGATCTAGCTATTCACATCTTGT 57.602 37.500 0.00 0.00 0.00 3.16
2427 5852 7.536964 CACTACGATCTAGCTATTCACATCTTG 59.463 40.741 0.00 0.00 0.00 3.02
2429 5854 6.150307 CCACTACGATCTAGCTATTCACATCT 59.850 42.308 0.00 0.00 0.00 2.90
2430 5855 6.318628 CCACTACGATCTAGCTATTCACATC 58.681 44.000 0.00 0.00 0.00 3.06
2431 5856 5.184096 CCCACTACGATCTAGCTATTCACAT 59.816 44.000 0.00 0.00 0.00 3.21
2432 5857 4.519350 CCCACTACGATCTAGCTATTCACA 59.481 45.833 0.00 0.00 0.00 3.58
2433 5858 4.760715 TCCCACTACGATCTAGCTATTCAC 59.239 45.833 0.00 0.00 0.00 3.18
2435 5860 5.961396 TTCCCACTACGATCTAGCTATTC 57.039 43.478 0.00 0.00 0.00 1.75
2436 5861 6.919775 ATTTCCCACTACGATCTAGCTATT 57.080 37.500 0.00 0.00 0.00 1.73
2437 5862 6.493802 TGAATTTCCCACTACGATCTAGCTAT 59.506 38.462 0.00 0.00 0.00 2.97
2440 5865 4.745620 GTGAATTTCCCACTACGATCTAGC 59.254 45.833 0.00 0.00 0.00 3.42
2441 5866 6.150396 AGTGAATTTCCCACTACGATCTAG 57.850 41.667 0.00 0.00 42.51 2.43
2442 5867 6.540438 AAGTGAATTTCCCACTACGATCTA 57.460 37.500 0.00 0.00 43.42 1.98
2443 5868 5.422214 AAGTGAATTTCCCACTACGATCT 57.578 39.130 0.00 0.00 43.42 2.75
2445 5870 4.700213 CCAAAGTGAATTTCCCACTACGAT 59.300 41.667 0.00 0.00 43.42 3.73
2447 5872 3.818773 ACCAAAGTGAATTTCCCACTACG 59.181 43.478 0.00 0.00 43.42 3.51
2454 5879 3.809279 CCTTTGCACCAAAGTGAATTTCC 59.191 43.478 14.46 0.00 46.40 3.13
2455 5880 4.270808 CACCTTTGCACCAAAGTGAATTTC 59.729 41.667 14.46 0.00 46.40 2.17
2456 5881 4.190772 CACCTTTGCACCAAAGTGAATTT 58.809 39.130 14.46 0.00 46.40 1.82
2457 5882 3.795877 CACCTTTGCACCAAAGTGAATT 58.204 40.909 14.46 0.00 46.40 2.17
2458 5883 3.457610 CACCTTTGCACCAAAGTGAAT 57.542 42.857 14.46 0.00 46.40 2.57
2478 5903 4.963276 TTTAGACAATAGGTGCATGTGC 57.037 40.909 0.00 0.00 42.50 4.57
2479 5904 9.271828 TGTATATTTAGACAATAGGTGCATGTG 57.728 33.333 0.00 0.00 0.00 3.21
2532 5957 2.679930 CGGACTTAGAGGCGGGATTTTT 60.680 50.000 0.00 0.00 0.00 1.94
2533 5958 1.134491 CGGACTTAGAGGCGGGATTTT 60.134 52.381 0.00 0.00 0.00 1.82
2535 5960 1.400530 CCGGACTTAGAGGCGGGATT 61.401 60.000 0.00 0.00 45.88 3.01
2536 5961 1.833049 CCGGACTTAGAGGCGGGAT 60.833 63.158 0.00 0.00 45.88 3.85
2537 5962 2.441532 CCGGACTTAGAGGCGGGA 60.442 66.667 0.00 0.00 45.88 5.14
2538 5963 2.441532 TCCGGACTTAGAGGCGGG 60.442 66.667 0.00 1.19 44.49 6.13
2539 5964 1.392710 ATGTCCGGACTTAGAGGCGG 61.393 60.000 33.39 0.00 0.00 6.13
2540 5965 0.460311 AATGTCCGGACTTAGAGGCG 59.540 55.000 33.39 0.00 0.00 5.52
2541 5966 5.411781 CATATAATGTCCGGACTTAGAGGC 58.588 45.833 33.39 6.83 0.00 4.70
2542 5967 5.411781 GCATATAATGTCCGGACTTAGAGG 58.588 45.833 33.39 24.95 0.00 3.69
2543 5968 5.096169 CGCATATAATGTCCGGACTTAGAG 58.904 45.833 33.39 20.36 0.00 2.43
2544 5969 4.521639 ACGCATATAATGTCCGGACTTAGA 59.478 41.667 33.39 24.10 0.00 2.10
2545 5970 4.621460 CACGCATATAATGTCCGGACTTAG 59.379 45.833 33.39 17.75 0.00 2.18
2546 5971 4.038282 ACACGCATATAATGTCCGGACTTA 59.962 41.667 33.39 26.26 0.00 2.24
2547 5972 3.181469 ACACGCATATAATGTCCGGACTT 60.181 43.478 33.39 25.40 0.00 3.01
2548 5973 2.364324 ACACGCATATAATGTCCGGACT 59.636 45.455 33.39 18.29 0.00 3.85
2549 5974 2.750948 ACACGCATATAATGTCCGGAC 58.249 47.619 28.17 28.17 0.00 4.79
2550 5975 3.305539 GGTACACGCATATAATGTCCGGA 60.306 47.826 0.00 0.00 0.00 5.14
2551 5976 2.991190 GGTACACGCATATAATGTCCGG 59.009 50.000 0.00 0.00 0.00 5.14
2552 5977 3.644823 TGGTACACGCATATAATGTCCG 58.355 45.455 0.00 0.00 0.00 4.79
2553 5978 5.054477 ACTTGGTACACGCATATAATGTCC 58.946 41.667 0.00 0.00 39.29 4.02
2555 5980 6.237996 CGAAACTTGGTACACGCATATAATGT 60.238 38.462 0.00 0.00 39.29 2.71
2556 5981 6.019398 TCGAAACTTGGTACACGCATATAATG 60.019 38.462 0.00 0.00 39.29 1.90
2557 5982 6.044046 TCGAAACTTGGTACACGCATATAAT 58.956 36.000 0.00 0.00 39.29 1.28
2559 5984 4.996344 TCGAAACTTGGTACACGCATATA 58.004 39.130 0.00 0.00 39.29 0.86
2561 5986 3.300852 TCGAAACTTGGTACACGCATA 57.699 42.857 0.00 0.00 39.29 3.14
2563 5988 2.063266 GATCGAAACTTGGTACACGCA 58.937 47.619 0.00 0.00 39.29 5.24
2564 5989 2.063266 TGATCGAAACTTGGTACACGC 58.937 47.619 0.00 0.00 39.29 5.34
2565 5990 4.718858 TTTGATCGAAACTTGGTACACG 57.281 40.909 0.00 0.00 39.29 4.49
2567 5992 5.823570 TCCTTTTTGATCGAAACTTGGTACA 59.176 36.000 7.67 0.00 0.00 2.90
2568 5993 6.140786 GTCCTTTTTGATCGAAACTTGGTAC 58.859 40.000 7.67 7.48 0.00 3.34
2570 5995 4.642885 TGTCCTTTTTGATCGAAACTTGGT 59.357 37.500 7.67 0.00 0.00 3.67
2571 5996 5.181690 TGTCCTTTTTGATCGAAACTTGG 57.818 39.130 7.67 10.36 0.00 3.61
2572 5997 7.698836 AAATGTCCTTTTTGATCGAAACTTG 57.301 32.000 7.67 2.20 0.00 3.16
2573 5998 8.716646 AAAAATGTCCTTTTTGATCGAAACTT 57.283 26.923 7.67 0.00 43.68 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.