Multiple sequence alignment - TraesCS6A01G115900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G115900 chr6A 100.000 5849 0 0 1 5849 85746879 85752727 0.000000e+00 10802
1 TraesCS6A01G115900 chr6B 95.762 5805 184 36 1 5756 143434000 143439791 0.000000e+00 9300
2 TraesCS6A01G115900 chr6D 96.899 4515 125 12 744 5250 68329880 68334387 0.000000e+00 7548
3 TraesCS6A01G115900 chr6D 94.205 604 25 4 5249 5849 68334470 68335066 0.000000e+00 913
4 TraesCS6A01G115900 chr5D 93.627 1522 91 2 3339 4854 22442549 22441028 0.000000e+00 2268
5 TraesCS6A01G115900 chr5D 92.721 1360 94 4 1997 3355 22443936 22442581 0.000000e+00 1958
6 TraesCS6A01G115900 chr5D 85.824 1044 78 28 973 1971 22444950 22443932 0.000000e+00 1044
7 TraesCS6A01G115900 chr5B 93.065 1543 101 2 3318 4854 16035248 16033706 0.000000e+00 2252
8 TraesCS6A01G115900 chr5B 92.274 1359 100 4 1997 3354 16036614 16035260 0.000000e+00 1923
9 TraesCS6A01G115900 chr5B 85.314 1035 88 27 973 1971 16037616 16036610 0.000000e+00 1011
10 TraesCS6A01G115900 chr5B 82.870 216 29 6 976 1189 641028685 641028476 2.780000e-43 187
11 TraesCS6A01G115900 chr5B 79.464 224 24 11 4813 5035 705973223 705973021 7.900000e-29 139
12 TraesCS6A01G115900 chr7D 84.106 604 68 17 5168 5756 566524729 566524139 5.120000e-155 558
13 TraesCS6A01G115900 chr7D 87.209 172 20 2 396 567 7472505 7472674 1.660000e-45 195
14 TraesCS6A01G115900 chr7B 83.770 610 77 14 5153 5753 620674164 620674760 5.120000e-155 558
15 TraesCS6A01G115900 chr3D 89.474 171 17 1 395 565 118416332 118416501 1.280000e-51 215
16 TraesCS6A01G115900 chr4A 88.889 171 17 2 394 563 673480048 673479879 5.940000e-50 209
17 TraesCS6A01G115900 chr4A 87.356 174 20 2 393 565 731199365 731199537 1.290000e-46 198
18 TraesCS6A01G115900 chr7A 88.757 169 18 1 395 563 709998225 709998058 7.680000e-49 206
19 TraesCS6A01G115900 chr7A 90.909 143 12 1 395 537 709993035 709993176 2.150000e-44 191
20 TraesCS6A01G115900 chr2D 89.933 149 14 1 399 547 447248647 447248500 2.150000e-44 191
21 TraesCS6A01G115900 chr2D 86.391 169 22 1 397 565 433211214 433211381 3.600000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G115900 chr6A 85746879 85752727 5848 False 10802.000000 10802 100.000000 1 5849 1 chr6A.!!$F1 5848
1 TraesCS6A01G115900 chr6B 143434000 143439791 5791 False 9300.000000 9300 95.762000 1 5756 1 chr6B.!!$F1 5755
2 TraesCS6A01G115900 chr6D 68329880 68335066 5186 False 4230.500000 7548 95.552000 744 5849 2 chr6D.!!$F1 5105
3 TraesCS6A01G115900 chr5D 22441028 22444950 3922 True 1756.666667 2268 90.724000 973 4854 3 chr5D.!!$R1 3881
4 TraesCS6A01G115900 chr5B 16033706 16037616 3910 True 1728.666667 2252 90.217667 973 4854 3 chr5B.!!$R3 3881
5 TraesCS6A01G115900 chr7D 566524139 566524729 590 True 558.000000 558 84.106000 5168 5756 1 chr7D.!!$R1 588
6 TraesCS6A01G115900 chr7B 620674164 620674760 596 False 558.000000 558 83.770000 5153 5753 1 chr7B.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
945 1015 0.106015 CCATCCCTTCCACCCAATCC 60.106 60.000 0.00 0.00 0.00 3.01 F
947 1017 1.296662 ATCCCTTCCACCCAATCCCC 61.297 60.000 0.00 0.00 0.00 4.81 F
1929 2056 1.679311 GTGGGATGAGACACCAGCA 59.321 57.895 0.00 0.00 34.39 4.41 F
2325 2452 1.908299 CTTGGGTCCTGGTTTGCCC 60.908 63.158 10.04 10.04 41.42 5.36 F
3018 3145 2.010145 TTGAGCATGGTCTAAGCGAC 57.990 50.000 24.30 0.00 42.07 5.19 F
3699 3877 2.244436 CTGTTGTGAATGCGCTCGGG 62.244 60.000 9.73 0.00 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2325 2452 1.202330 AGTCCTCTGGCTTCATGAGG 58.798 55.000 0.00 0.0 46.34 3.86 R
2502 2629 3.365265 GGGCCAGCACCAAACTCG 61.365 66.667 4.39 0.0 0.00 4.18 R
3018 3145 0.319555 TCCGCACTTTCTGGTTCTCG 60.320 55.000 0.00 0.0 0.00 4.04 R
3699 3877 0.393132 GGTAAGGCTTGACCCTCTGC 60.393 60.000 10.69 0.0 40.58 4.26 R
4122 4300 4.464008 TCTTGTGAGCCTTCAACATTTCT 58.536 39.130 0.00 0.0 34.49 2.52 R
5105 5286 2.955660 AGAGACCTAGTGAGCATAGTGC 59.044 50.000 0.00 0.0 45.46 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 2.283894 CCCCAAAAGCCCCCTGAC 60.284 66.667 0.00 0.00 0.00 3.51
66 67 3.587061 CCCTGACCCCATACATATAGCAA 59.413 47.826 0.00 0.00 0.00 3.91
72 73 3.513912 CCCCATACATATAGCAACGGAGA 59.486 47.826 0.00 0.00 0.00 3.71
75 76 2.821991 ACATATAGCAACGGAGAGGC 57.178 50.000 0.00 0.00 0.00 4.70
76 77 2.039418 ACATATAGCAACGGAGAGGCA 58.961 47.619 0.00 0.00 33.16 4.75
122 123 5.379732 TTTTATGGGCCGTCAACTTTTAG 57.620 39.130 0.00 0.00 0.00 1.85
160 161 1.592064 AAAAAGCCAAAACCCGCATG 58.408 45.000 0.00 0.00 0.00 4.06
194 195 2.733820 ACACGTCGACGAGCTATTAG 57.266 50.000 41.52 21.22 43.02 1.73
222 223 4.102210 TCTGCTAGAGATGCTTTTATGCCT 59.898 41.667 0.00 0.00 0.00 4.75
244 245 0.397254 ACTCATCGGTAGAGTGGGGG 60.397 60.000 4.86 0.00 44.23 5.40
260 261 1.004891 GGGAGATGAAGGAGGGGGT 59.995 63.158 0.00 0.00 0.00 4.95
295 296 5.421693 AGAGAAGAGAGTAGCACAACATGAT 59.578 40.000 0.00 0.00 0.00 2.45
319 320 8.859236 ATTATGGGAGTTGATATCATTGACTG 57.141 34.615 12.26 0.00 0.00 3.51
320 321 5.955961 TGGGAGTTGATATCATTGACTGA 57.044 39.130 12.26 0.00 38.53 3.41
368 372 7.517614 TTTTTGCTACATGAACATAACCTCA 57.482 32.000 0.00 0.00 0.00 3.86
406 410 4.887071 TGCAATGGAATAAGGCGAAGTATT 59.113 37.500 0.00 0.00 0.00 1.89
409 413 6.426937 GCAATGGAATAAGGCGAAGTATTAGA 59.573 38.462 0.00 0.00 0.00 2.10
421 425 7.657761 AGGCGAAGTATTAGATGAAAATAGGTG 59.342 37.037 0.00 0.00 0.00 4.00
424 428 8.704234 CGAAGTATTAGATGAAAATAGGTGCTC 58.296 37.037 0.00 0.00 0.00 4.26
426 430 9.905713 AAGTATTAGATGAAAATAGGTGCTCAA 57.094 29.630 0.00 0.00 0.00 3.02
438 442 6.939132 ATAGGTGCTCAATGAAAATCTGAG 57.061 37.500 0.00 0.00 39.69 3.35
457 461 5.755375 TCTGAGAATTTTCGCATGGTCTATC 59.245 40.000 0.00 0.00 36.43 2.08
468 472 7.888250 TCGCATGGTCTATCAGATCTATAAT 57.112 36.000 0.00 0.00 0.00 1.28
528 532 7.575414 TCCACTTAAACACAATTAGCAGAAA 57.425 32.000 0.00 0.00 0.00 2.52
550 555 0.324943 CCCCTGACTCGTTCACCATT 59.675 55.000 0.00 0.00 0.00 3.16
556 561 4.383118 CCTGACTCGTTCACCATTAAGGAT 60.383 45.833 0.00 0.00 41.22 3.24
572 577 9.612620 CCATTAAGGATGAAAAATCTTATACGC 57.387 33.333 0.00 0.00 41.22 4.42
603 631 4.114997 GCCGCCACGTTTCATGGG 62.115 66.667 0.00 0.00 37.73 4.00
622 650 2.103601 GGGCCATGATGGAATTTTCAGG 59.896 50.000 17.22 0.00 40.96 3.86
658 686 6.759497 ACCTATTTTCACTGGATACTTTGC 57.241 37.500 0.00 0.00 37.61 3.68
659 687 5.652452 ACCTATTTTCACTGGATACTTTGCC 59.348 40.000 0.00 0.00 37.61 4.52
660 688 5.652014 CCTATTTTCACTGGATACTTTGCCA 59.348 40.000 0.00 0.00 37.61 4.92
669 697 6.773976 CTGGATACTTTGCCAGGAAATAAA 57.226 37.500 0.00 0.00 46.24 1.40
670 698 6.773976 TGGATACTTTGCCAGGAAATAAAG 57.226 37.500 0.00 0.00 36.48 1.85
671 699 6.252995 TGGATACTTTGCCAGGAAATAAAGT 58.747 36.000 13.02 13.02 43.48 2.66
672 700 6.723977 TGGATACTTTGCCAGGAAATAAAGTT 59.276 34.615 13.45 5.72 41.84 2.66
673 701 7.891183 TGGATACTTTGCCAGGAAATAAAGTTA 59.109 33.333 13.45 4.89 41.84 2.24
674 702 8.914011 GGATACTTTGCCAGGAAATAAAGTTAT 58.086 33.333 13.45 7.90 41.84 1.89
675 703 9.952188 GATACTTTGCCAGGAAATAAAGTTATC 57.048 33.333 13.45 11.11 41.84 1.75
676 704 7.170393 ACTTTGCCAGGAAATAAAGTTATCC 57.830 36.000 0.00 0.00 39.56 2.59
677 705 6.723977 ACTTTGCCAGGAAATAAAGTTATCCA 59.276 34.615 0.00 0.00 39.56 3.41
734 762 7.038659 CCTTGAATTCACCCGCAAAATAATAA 58.961 34.615 7.89 0.00 0.00 1.40
736 764 9.743057 CTTGAATTCACCCGCAAAATAATAATA 57.257 29.630 7.89 0.00 0.00 0.98
910 980 2.039216 TCGTACTTTGCCAGATCCCAAA 59.961 45.455 0.00 0.00 0.00 3.28
930 1000 2.876581 ACTTCCCAAGTCCAAACCATC 58.123 47.619 0.00 0.00 37.02 3.51
939 1009 0.407918 TCCAAACCATCCCTTCCACC 59.592 55.000 0.00 0.00 0.00 4.61
945 1015 0.106015 CCATCCCTTCCACCCAATCC 60.106 60.000 0.00 0.00 0.00 3.01
947 1017 1.296662 ATCCCTTCCACCCAATCCCC 61.297 60.000 0.00 0.00 0.00 4.81
1908 2035 2.264455 ACACCCAAGAAGCAGAGATCT 58.736 47.619 0.00 0.00 0.00 2.75
1929 2056 1.679311 GTGGGATGAGACACCAGCA 59.321 57.895 0.00 0.00 34.39 4.41
2325 2452 1.908299 CTTGGGTCCTGGTTTGCCC 60.908 63.158 10.04 10.04 41.42 5.36
2502 2629 2.551270 CTCACGGACAAAGCACGC 59.449 61.111 0.00 0.00 0.00 5.34
3018 3145 2.010145 TTGAGCATGGTCTAAGCGAC 57.990 50.000 24.30 0.00 42.07 5.19
3078 3205 2.257676 GCACTTGCTGAAGCTGCC 59.742 61.111 3.61 0.00 42.66 4.85
3081 3208 3.359523 CTTGCTGAAGCTGCCGCA 61.360 61.111 6.71 6.71 42.66 5.69
3267 3394 4.707448 GTCCTGATTAGAGAGTTCCAGTCA 59.293 45.833 0.00 0.00 0.00 3.41
3522 3700 6.715280 TCTGAAAGATGAAAGTGAGCCTTAT 58.285 36.000 0.00 0.00 38.67 1.73
3699 3877 2.244436 CTGTTGTGAATGCGCTCGGG 62.244 60.000 9.73 0.00 0.00 5.14
3877 4055 3.000727 GGTGTTGTGCTGTATGAGTACC 58.999 50.000 0.00 0.00 36.50 3.34
4122 4300 6.071952 GGATGAGGATTTGTTTTGAGTTGCTA 60.072 38.462 0.00 0.00 0.00 3.49
4374 4552 5.880332 GGAGCTAAATGTTCAGAATGGTGTA 59.120 40.000 0.00 0.00 36.16 2.90
4410 4588 7.275920 TCTCTTTCCTCTTTGAGTATATTGGC 58.724 38.462 0.00 0.00 0.00 4.52
4921 5102 8.988934 TGTAATGTTTGAGTAGCTACTGAAAAG 58.011 33.333 31.54 0.00 40.20 2.27
5036 5217 8.927675 ATCCAGACTATACTTGTAGGAGTTAG 57.072 38.462 0.00 0.00 0.00 2.34
5105 5286 7.425606 ACAACTTTTAACCTGCAGTTATTGAG 58.574 34.615 13.81 6.40 40.62 3.02
5146 5327 7.124448 GGTCTCTCCCTAGTATTTCAAGAGAAA 59.876 40.741 0.00 0.00 46.90 2.52
5147 5328 8.532819 GTCTCTCCCTAGTATTTCAAGAGAAAA 58.467 37.037 0.00 0.00 46.06 2.29
5148 5329 9.101325 TCTCTCCCTAGTATTTCAAGAGAAAAA 57.899 33.333 0.00 0.00 46.06 1.94
5180 5365 3.624861 CCAGAAATGGATCGAAACTCTGG 59.375 47.826 14.48 14.48 41.72 3.86
5235 5422 7.121168 TCCCTCAGAATTTGCAACTATAGTTTG 59.879 37.037 15.60 11.91 35.83 2.93
5364 5641 3.951663 AGGTGGATGCAGGTAGTAAAAC 58.048 45.455 0.00 0.00 0.00 2.43
5401 5681 5.826208 TGGGTAGTTGTTTCTTTTCCTCTTC 59.174 40.000 0.00 0.00 0.00 2.87
5466 5746 8.145767 TCAAGATTCTTTGTTTCATGCTCATTT 58.854 29.630 0.00 0.00 0.00 2.32
5544 5825 6.014840 TCAGTTTTACATTAGTCCCGAACTCT 60.015 38.462 0.00 0.00 39.55 3.24
5670 5952 7.062722 CAGGTAACGAATCTGTATATGATGCTG 59.937 40.741 0.00 0.00 46.39 4.41
5686 5968 1.808343 TGCTGTACATTCTGCTTGCAG 59.192 47.619 15.74 15.74 34.27 4.41
5757 6039 9.237846 GCTAAAATGTATAAATTCTGTCAAGGC 57.762 33.333 0.00 0.00 0.00 4.35
5834 6116 7.888021 TCTGACCCATTGAGTGTATGTTTAAAT 59.112 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.450025 GATCCCCTCCGTTGTGAAAC 58.550 55.000 0.00 0.00 37.35 2.78
50 51 3.513912 TCTCCGTTGCTATATGTATGGGG 59.486 47.826 0.00 0.00 0.00 4.96
98 99 3.653539 AAGTTGACGGCCCATAAAAAC 57.346 42.857 0.00 0.00 0.00 2.43
122 123 1.729284 TTCGGCCCGAACAAATCTAC 58.271 50.000 15.93 0.00 41.05 2.59
160 161 4.624024 TCGACGTGTAAAATTCCATCTGTC 59.376 41.667 0.00 0.00 0.00 3.51
194 195 2.437200 AGCATCTCTAGCAGATTCGC 57.563 50.000 2.93 4.93 40.20 4.70
222 223 2.100197 CCCACTCTACCGATGAGTTGA 58.900 52.381 0.00 0.00 42.21 3.18
244 245 1.348775 CCCACCCCCTCCTTCATCTC 61.349 65.000 0.00 0.00 0.00 2.75
260 261 1.203013 TCTCTTCTCTCGAACACCCCA 60.203 52.381 0.00 0.00 0.00 4.96
282 283 5.372343 ACTCCCATAATCATGTTGTGCTA 57.628 39.130 0.00 0.00 0.00 3.49
295 296 8.033178 TCAGTCAATGATATCAACTCCCATAA 57.967 34.615 9.99 0.00 31.12 1.90
352 356 3.378112 CGCCATTGAGGTTATGTTCATGT 59.622 43.478 0.00 0.00 40.61 3.21
368 372 2.401583 TTGCACTACATCTCGCCATT 57.598 45.000 0.00 0.00 0.00 3.16
406 410 8.806429 TTTCATTGAGCACCTATTTTCATCTA 57.194 30.769 0.00 0.00 0.00 1.98
409 413 8.755977 AGATTTTCATTGAGCACCTATTTTCAT 58.244 29.630 0.00 0.00 0.00 2.57
438 442 5.991328 TCTGATAGACCATGCGAAAATTC 57.009 39.130 0.00 0.00 0.00 2.17
457 461 9.538508 TGATCAGTGTTGTTCATTATAGATCTG 57.461 33.333 5.18 0.00 30.14 2.90
468 472 4.097741 CCACCTTTTGATCAGTGTTGTTCA 59.902 41.667 10.80 0.00 32.58 3.18
528 532 1.752833 GTGAACGAGTCAGGGGGTT 59.247 57.895 0.00 0.00 36.74 4.11
550 555 8.208224 TGAGGCGTATAAGATTTTTCATCCTTA 58.792 33.333 0.00 0.00 0.00 2.69
556 561 8.506168 AAGATTGAGGCGTATAAGATTTTTCA 57.494 30.769 0.00 0.00 0.00 2.69
567 572 3.672511 CGGCGTATAAGATTGAGGCGTAT 60.673 47.826 0.00 0.00 41.58 3.06
568 573 2.351060 CGGCGTATAAGATTGAGGCGTA 60.351 50.000 0.00 0.00 41.58 4.42
569 574 1.602165 CGGCGTATAAGATTGAGGCGT 60.602 52.381 0.00 0.00 41.58 5.68
570 575 1.060713 CGGCGTATAAGATTGAGGCG 58.939 55.000 0.00 0.00 40.84 5.52
572 577 1.270094 TGGCGGCGTATAAGATTGAGG 60.270 52.381 9.37 0.00 0.00 3.86
603 631 4.476628 AACCTGAAAATTCCATCATGGC 57.523 40.909 0.00 0.00 37.47 4.40
656 684 7.669722 GGATATGGATAACTTTATTTCCTGGCA 59.330 37.037 0.00 0.00 0.00 4.92
657 685 7.122799 GGGATATGGATAACTTTATTTCCTGGC 59.877 40.741 0.00 0.00 0.00 4.85
658 686 8.170061 TGGGATATGGATAACTTTATTTCCTGG 58.830 37.037 0.00 0.00 0.00 4.45
659 687 9.586732 TTGGGATATGGATAACTTTATTTCCTG 57.413 33.333 0.00 0.00 0.00 3.86
673 701 9.533831 GGAGTAACATATTTTTGGGATATGGAT 57.466 33.333 8.46 1.46 40.26 3.41
674 702 8.732854 AGGAGTAACATATTTTTGGGATATGGA 58.267 33.333 8.46 0.00 40.26 3.41
675 703 8.940397 AGGAGTAACATATTTTTGGGATATGG 57.060 34.615 8.46 0.00 40.26 2.74
701 729 5.186797 TGCGGGTGAATTCAAGGAATAAATT 59.813 36.000 10.35 0.00 31.46 1.82
709 737 2.810439 TTTTGCGGGTGAATTCAAGG 57.190 45.000 10.35 3.56 0.00 3.61
758 821 7.090953 AGTGAACCGACTTAAAATCAAACAA 57.909 32.000 0.00 0.00 0.00 2.83
843 907 1.728490 GGGCCGTTGATTGATCTGGC 61.728 60.000 0.00 11.47 38.59 4.85
910 980 2.490902 GGATGGTTTGGACTTGGGAAGT 60.491 50.000 0.00 0.00 46.38 3.01
930 1000 2.689813 GGGGATTGGGTGGAAGGG 59.310 66.667 0.00 0.00 0.00 3.95
963 1034 2.184579 GGTTTCGCGAGAGAGGGG 59.815 66.667 9.59 0.00 43.69 4.79
1929 2056 1.271926 GGTGTTGCACTCCCCATACTT 60.272 52.381 0.00 0.00 34.40 2.24
2325 2452 1.202330 AGTCCTCTGGCTTCATGAGG 58.798 55.000 0.00 0.00 46.34 3.86
2502 2629 3.365265 GGGCCAGCACCAAACTCG 61.365 66.667 4.39 0.00 0.00 4.18
2742 2869 3.492383 CAGCAATCATAGTAGCAAGACCG 59.508 47.826 0.00 0.00 0.00 4.79
3018 3145 0.319555 TCCGCACTTTCTGGTTCTCG 60.320 55.000 0.00 0.00 0.00 4.04
3093 3220 7.757624 GGTTTCAACACACTATCAAAACTTTCA 59.242 33.333 0.00 0.00 0.00 2.69
3267 3394 6.811634 ATCTTCTTCATCTCTTCATCTGGT 57.188 37.500 0.00 0.00 0.00 4.00
3522 3700 5.512942 TTGTTTCCATCACCATTCTCCTA 57.487 39.130 0.00 0.00 0.00 2.94
3699 3877 0.393132 GGTAAGGCTTGACCCTCTGC 60.393 60.000 10.69 0.00 40.58 4.26
4122 4300 4.464008 TCTTGTGAGCCTTCAACATTTCT 58.536 39.130 0.00 0.00 34.49 2.52
4374 4552 6.933514 AAGAGGAAAGAGAGAGACTTCAAT 57.066 37.500 0.00 0.00 0.00 2.57
4410 4588 7.466455 GCATATATGTAATCTTTGCCCATCTCG 60.466 40.741 14.14 0.00 0.00 4.04
4921 5102 9.294030 CAAACTTATTTCATATCTTGGCAGAAC 57.706 33.333 0.00 0.00 30.76 3.01
5036 5217 4.837896 ACTCCAAAAGCTTAAGAACAGC 57.162 40.909 6.67 0.00 37.56 4.40
5069 5250 6.635239 CAGGTTAAAAGTTGTTGTCCGTATTG 59.365 38.462 0.00 0.00 0.00 1.90
5105 5286 2.955660 AGAGACCTAGTGAGCATAGTGC 59.044 50.000 0.00 0.00 45.46 4.40
5148 5329 4.082571 CGATCCATTTCTGGCTGAGTTTTT 60.083 41.667 0.00 0.00 42.80 1.94
5162 5345 7.565680 ACTATTACCAGAGTTTCGATCCATTT 58.434 34.615 0.00 0.00 0.00 2.32
5165 5348 6.540438 AACTATTACCAGAGTTTCGATCCA 57.460 37.500 0.00 0.00 31.83 3.41
5235 5422 6.017109 TGTTCCTGTTCTAGATTTTGCACTTC 60.017 38.462 0.00 0.00 0.00 3.01
5332 5603 4.202202 CCTGCATCCACCTTTTGTTAAACA 60.202 41.667 0.00 0.00 0.00 2.83
5364 5641 6.877611 ACAACTACCCACTAACAGAATTTG 57.122 37.500 0.00 0.00 0.00 2.32
5401 5681 6.566197 AAGGCAAGAAAGTAGATGTGAAAG 57.434 37.500 0.00 0.00 0.00 2.62
5670 5952 4.154737 TGATGAACTGCAAGCAGAATGTAC 59.845 41.667 27.17 13.69 46.30 2.90
5757 6039 4.678509 TTAACCGAGCAGCAATTTACTG 57.321 40.909 0.00 1.54 38.22 2.74
5765 6047 3.671008 TTCTACTTTAACCGAGCAGCA 57.329 42.857 0.00 0.00 0.00 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.