Multiple sequence alignment - TraesCS6A01G115300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G115300 chr6A 100.000 2537 0 0 1 2537 85135910 85133374 0.000000e+00 4686
1 TraesCS6A01G115300 chr6A 97.508 642 15 1 1 641 79749064 79749705 0.000000e+00 1096
2 TraesCS6A01G115300 chr2B 99.220 641 5 0 1 641 566006397 566007037 0.000000e+00 1157
3 TraesCS6A01G115300 chr2B 83.979 568 55 14 977 1538 193206762 193207299 1.740000e-141 512
4 TraesCS6A01G115300 chr6B 88.247 970 65 19 642 1583 142596849 142595901 0.000000e+00 1114
5 TraesCS6A01G115300 chr6B 88.485 165 14 1 2180 2344 142593484 142593325 7.160000e-46 195
6 TraesCS6A01G115300 chr5B 97.975 642 12 1 1 641 45948777 45948136 0.000000e+00 1112
7 TraesCS6A01G115300 chr3B 97.819 642 13 1 1 641 663496566 663495925 0.000000e+00 1107
8 TraesCS6A01G115300 chr3B 97.819 642 13 1 1 641 810906755 810906114 0.000000e+00 1107
9 TraesCS6A01G115300 chr3B 97.660 641 15 0 1 641 766717288 766717928 0.000000e+00 1101
10 TraesCS6A01G115300 chr7B 97.508 642 15 1 1 641 600347881 600348522 0.000000e+00 1096
11 TraesCS6A01G115300 chr7A 97.508 642 15 1 1 641 91700589 91701230 0.000000e+00 1096
12 TraesCS6A01G115300 chr4A 97.196 642 18 0 1 642 716885967 716886608 0.000000e+00 1086
13 TraesCS6A01G115300 chr6D 91.469 715 38 11 885 1587 67545022 67544319 0.000000e+00 961
14 TraesCS6A01G115300 chr6D 91.339 254 16 2 650 899 67545511 67545260 2.420000e-90 342
15 TraesCS6A01G115300 chr6D 88.636 132 8 3 2180 2311 67543024 67542900 1.220000e-33 154
16 TraesCS6A01G115300 chr2A 81.600 750 84 29 818 1538 143251589 143252313 2.830000e-159 571
17 TraesCS6A01G115300 chr2D 85.009 567 57 9 977 1538 135476601 135477144 3.690000e-153 551


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G115300 chr6A 85133374 85135910 2536 True 4686.000000 4686 100.000000 1 2537 1 chr6A.!!$R1 2536
1 TraesCS6A01G115300 chr6A 79749064 79749705 641 False 1096.000000 1096 97.508000 1 641 1 chr6A.!!$F1 640
2 TraesCS6A01G115300 chr2B 566006397 566007037 640 False 1157.000000 1157 99.220000 1 641 1 chr2B.!!$F2 640
3 TraesCS6A01G115300 chr2B 193206762 193207299 537 False 512.000000 512 83.979000 977 1538 1 chr2B.!!$F1 561
4 TraesCS6A01G115300 chr6B 142593325 142596849 3524 True 654.500000 1114 88.366000 642 2344 2 chr6B.!!$R1 1702
5 TraesCS6A01G115300 chr5B 45948136 45948777 641 True 1112.000000 1112 97.975000 1 641 1 chr5B.!!$R1 640
6 TraesCS6A01G115300 chr3B 663495925 663496566 641 True 1107.000000 1107 97.819000 1 641 1 chr3B.!!$R1 640
7 TraesCS6A01G115300 chr3B 810906114 810906755 641 True 1107.000000 1107 97.819000 1 641 1 chr3B.!!$R2 640
8 TraesCS6A01G115300 chr3B 766717288 766717928 640 False 1101.000000 1101 97.660000 1 641 1 chr3B.!!$F1 640
9 TraesCS6A01G115300 chr7B 600347881 600348522 641 False 1096.000000 1096 97.508000 1 641 1 chr7B.!!$F1 640
10 TraesCS6A01G115300 chr7A 91700589 91701230 641 False 1096.000000 1096 97.508000 1 641 1 chr7A.!!$F1 640
11 TraesCS6A01G115300 chr4A 716885967 716886608 641 False 1086.000000 1086 97.196000 1 642 1 chr4A.!!$F1 641
12 TraesCS6A01G115300 chr6D 67542900 67545511 2611 True 485.666667 961 90.481333 650 2311 3 chr6D.!!$R1 1661
13 TraesCS6A01G115300 chr2A 143251589 143252313 724 False 571.000000 571 81.600000 818 1538 1 chr2A.!!$F1 720
14 TraesCS6A01G115300 chr2D 135476601 135477144 543 False 551.000000 551 85.009000 977 1538 1 chr2D.!!$F1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
648 650 0.038166 AGAACCACGACATTGGCCAT 59.962 50.0 6.09 0.0 40.77 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2477 4850 0.034896 GCACGGGAGAAAGTGGAAGA 59.965 55.0 0.0 0.0 38.68 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
532 533 2.100989 CGTAGGGCTGTTACTTCCTCT 58.899 52.381 0.00 0.00 0.00 3.69
642 644 2.301870 TCAGGCTTAGAACCACGACATT 59.698 45.455 0.00 0.00 0.00 2.71
643 645 2.416547 CAGGCTTAGAACCACGACATTG 59.583 50.000 0.00 0.00 0.00 2.82
644 646 1.737793 GGCTTAGAACCACGACATTGG 59.262 52.381 0.00 0.00 43.04 3.16
645 647 1.130561 GCTTAGAACCACGACATTGGC 59.869 52.381 0.00 0.00 40.77 4.52
646 648 1.737793 CTTAGAACCACGACATTGGCC 59.262 52.381 0.00 0.00 40.77 5.36
647 649 0.687920 TAGAACCACGACATTGGCCA 59.312 50.000 0.00 0.00 40.77 5.36
648 650 0.038166 AGAACCACGACATTGGCCAT 59.962 50.000 6.09 0.00 40.77 4.40
699 701 3.053455 GTCCACTTCTCACGAGACAAAG 58.947 50.000 0.00 0.00 37.14 2.77
732 734 2.795110 GCACCAAGCCACCAAGCAA 61.795 57.895 0.00 0.00 37.23 3.91
798 809 4.113815 CGGCCATGGCTCCTTCCA 62.114 66.667 34.70 0.00 41.60 3.53
806 817 0.555769 TGGCTCCTTCCAAACCAACT 59.444 50.000 0.00 0.00 32.18 3.16
813 824 3.010420 CCTTCCAAACCAACTAGCTAGC 58.990 50.000 20.91 6.62 0.00 3.42
816 827 0.370273 CAAACCAACTAGCTAGCGCG 59.630 55.000 20.91 0.00 42.32 6.86
852 863 0.179056 AACGCCCCGACATCCATAAG 60.179 55.000 0.00 0.00 0.00 1.73
857 868 2.572290 CCCCGACATCCATAAGAAACC 58.428 52.381 0.00 0.00 0.00 3.27
894 1157 1.209127 CCTTGCCGCTAAAACCACG 59.791 57.895 0.00 0.00 0.00 4.94
920 1184 1.837538 TTTGTACGCTTGTGCTCGCC 61.838 55.000 0.00 0.00 36.97 5.54
960 1227 3.087370 AGGTTAAGCCATGAGGTTTCC 57.913 47.619 0.00 3.66 39.29 3.13
969 1236 4.989334 GCCATGAGGTTTCCATCACTTGG 61.989 52.174 0.00 0.00 41.51 3.61
971 1238 4.567537 CCATGAGGTTTCCATCACTTGGTA 60.568 45.833 0.00 0.00 46.52 3.25
972 1239 4.715534 TGAGGTTTCCATCACTTGGTAA 57.284 40.909 0.00 0.00 46.52 2.85
974 1241 4.104102 TGAGGTTTCCATCACTTGGTAAGT 59.896 41.667 0.00 0.00 46.52 2.24
975 1242 5.061721 AGGTTTCCATCACTTGGTAAGTT 57.938 39.130 0.00 0.00 46.52 2.66
996 1285 0.831307 GTATCCCTCGGGTTTCTGCT 59.169 55.000 1.18 0.00 36.47 4.24
999 1288 0.543410 TCCCTCGGGTTTCTGCTACA 60.543 55.000 1.18 0.00 36.47 2.74
1096 1385 3.900892 CTAGCGTGGCGTCCCGAT 61.901 66.667 0.00 0.00 0.00 4.18
1530 1840 2.222729 CGCTAATCGTAAGGTTGTGTGC 60.223 50.000 0.00 0.00 43.38 4.57
1575 1898 8.651588 TGTGTGTGTTTGATTGTTGAATTTAAC 58.348 29.630 6.16 6.16 0.00 2.01
1576 1899 8.868916 GTGTGTGTTTGATTGTTGAATTTAACT 58.131 29.630 13.55 0.00 0.00 2.24
1577 1900 9.081997 TGTGTGTTTGATTGTTGAATTTAACTC 57.918 29.630 13.55 5.30 0.00 3.01
1578 1901 9.301153 GTGTGTTTGATTGTTGAATTTAACTCT 57.699 29.630 13.55 1.94 0.00 3.24
1579 1902 9.868277 TGTGTTTGATTGTTGAATTTAACTCTT 57.132 25.926 13.55 0.00 0.00 2.85
1588 1911 8.401046 TGTTGAATTTAACTCTTTCAAAACGG 57.599 30.769 13.55 0.00 40.08 4.44
1596 1919 4.394729 ACTCTTTCAAAACGGGATTGCTA 58.605 39.130 0.00 0.00 0.00 3.49
1611 1934 5.100751 GATTGCTAAATCCCGATTGACTG 57.899 43.478 0.00 0.00 36.90 3.51
1612 1935 3.904800 TGCTAAATCCCGATTGACTGA 57.095 42.857 0.00 0.00 0.00 3.41
1613 1936 3.797039 TGCTAAATCCCGATTGACTGAG 58.203 45.455 0.00 0.00 0.00 3.35
1614 1937 3.450817 TGCTAAATCCCGATTGACTGAGA 59.549 43.478 0.00 0.00 0.00 3.27
1615 1938 4.081142 TGCTAAATCCCGATTGACTGAGAA 60.081 41.667 0.00 0.00 0.00 2.87
1616 1939 5.059833 GCTAAATCCCGATTGACTGAGAAT 58.940 41.667 0.00 0.00 0.00 2.40
1617 1940 5.529060 GCTAAATCCCGATTGACTGAGAATT 59.471 40.000 0.00 0.00 0.00 2.17
1618 1941 6.706270 GCTAAATCCCGATTGACTGAGAATTA 59.294 38.462 0.00 0.00 0.00 1.40
1619 1942 7.226720 GCTAAATCCCGATTGACTGAGAATTAA 59.773 37.037 0.00 0.00 0.00 1.40
1620 1943 6.927294 AATCCCGATTGACTGAGAATTAAC 57.073 37.500 0.00 0.00 0.00 2.01
1621 1944 4.430007 TCCCGATTGACTGAGAATTAACG 58.570 43.478 0.00 0.00 0.00 3.18
1622 1945 4.158949 TCCCGATTGACTGAGAATTAACGA 59.841 41.667 0.00 0.00 0.00 3.85
1623 1946 4.868171 CCCGATTGACTGAGAATTAACGAA 59.132 41.667 0.00 0.00 0.00 3.85
1624 1947 5.005779 CCCGATTGACTGAGAATTAACGAAG 59.994 44.000 0.00 0.00 0.00 3.79
1626 1949 6.237595 CCGATTGACTGAGAATTAACGAAGTC 60.238 42.308 0.00 0.00 45.00 3.01
1627 1950 6.528423 CGATTGACTGAGAATTAACGAAGTCT 59.472 38.462 0.00 0.00 45.00 3.24
1628 1951 7.062371 CGATTGACTGAGAATTAACGAAGTCTT 59.938 37.037 0.00 0.00 45.00 3.01
1629 1952 7.408132 TTGACTGAGAATTAACGAAGTCTTG 57.592 36.000 0.00 0.00 45.00 3.02
1630 1953 6.745116 TGACTGAGAATTAACGAAGTCTTGA 58.255 36.000 0.00 0.00 45.00 3.02
1631 1954 7.378966 TGACTGAGAATTAACGAAGTCTTGAT 58.621 34.615 0.00 0.00 45.00 2.57
1632 1955 7.872993 TGACTGAGAATTAACGAAGTCTTGATT 59.127 33.333 0.00 0.00 45.00 2.57
1633 1956 8.023050 ACTGAGAATTAACGAAGTCTTGATTG 57.977 34.615 0.00 0.00 45.00 2.67
1634 1957 7.872993 ACTGAGAATTAACGAAGTCTTGATTGA 59.127 33.333 0.00 0.00 45.00 2.57
1635 1958 8.777865 TGAGAATTAACGAAGTCTTGATTGAT 57.222 30.769 0.00 0.00 45.00 2.57
1636 1959 8.659491 TGAGAATTAACGAAGTCTTGATTGATG 58.341 33.333 0.00 0.00 45.00 3.07
1637 1960 8.553459 AGAATTAACGAAGTCTTGATTGATGT 57.447 30.769 0.00 0.00 45.00 3.06
1638 1961 9.003658 AGAATTAACGAAGTCTTGATTGATGTT 57.996 29.630 0.00 0.00 45.00 2.71
1645 1968 8.755941 ACGAAGTCTTGATTGATGTTATATTCG 58.244 33.333 0.00 0.00 29.74 3.34
1646 1969 8.755941 CGAAGTCTTGATTGATGTTATATTCGT 58.244 33.333 0.00 0.00 31.40 3.85
1648 1971 8.286996 AGTCTTGATTGATGTTATATTCGTCG 57.713 34.615 0.00 0.00 0.00 5.12
1649 1972 7.382488 AGTCTTGATTGATGTTATATTCGTCGG 59.618 37.037 0.00 0.00 0.00 4.79
1650 1973 7.381408 GTCTTGATTGATGTTATATTCGTCGGA 59.619 37.037 0.00 0.00 0.00 4.55
1651 1974 7.381408 TCTTGATTGATGTTATATTCGTCGGAC 59.619 37.037 0.00 0.00 0.00 4.79
1652 1975 5.924254 TGATTGATGTTATATTCGTCGGACC 59.076 40.000 1.91 0.00 0.00 4.46
1653 1976 5.524971 TTGATGTTATATTCGTCGGACCT 57.475 39.130 1.91 0.00 0.00 3.85
1654 1977 5.524971 TGATGTTATATTCGTCGGACCTT 57.475 39.130 1.91 0.00 0.00 3.50
1655 1978 6.638096 TGATGTTATATTCGTCGGACCTTA 57.362 37.500 1.91 0.00 0.00 2.69
1656 1979 7.223260 TGATGTTATATTCGTCGGACCTTAT 57.777 36.000 1.91 0.73 0.00 1.73
1657 1980 7.663827 TGATGTTATATTCGTCGGACCTTATT 58.336 34.615 1.91 0.00 0.00 1.40
1658 1981 8.145767 TGATGTTATATTCGTCGGACCTTATTT 58.854 33.333 1.91 0.00 0.00 1.40
1659 1982 7.703298 TGTTATATTCGTCGGACCTTATTTG 57.297 36.000 1.91 0.00 0.00 2.32
1660 1983 7.490840 TGTTATATTCGTCGGACCTTATTTGA 58.509 34.615 1.91 0.00 0.00 2.69
1661 1984 7.980662 TGTTATATTCGTCGGACCTTATTTGAA 59.019 33.333 1.91 0.00 0.00 2.69
1662 1985 8.485591 GTTATATTCGTCGGACCTTATTTGAAG 58.514 37.037 1.91 0.00 0.00 3.02
1663 1986 4.524316 TTCGTCGGACCTTATTTGAAGA 57.476 40.909 1.91 0.00 0.00 2.87
1664 1987 3.841643 TCGTCGGACCTTATTTGAAGAC 58.158 45.455 1.91 0.00 0.00 3.01
1665 1988 2.928116 CGTCGGACCTTATTTGAAGACC 59.072 50.000 1.91 0.00 0.00 3.85
1666 1989 3.368116 CGTCGGACCTTATTTGAAGACCT 60.368 47.826 1.91 0.00 0.00 3.85
1667 1990 3.933332 GTCGGACCTTATTTGAAGACCTG 59.067 47.826 0.00 0.00 0.00 4.00
1668 1991 3.581332 TCGGACCTTATTTGAAGACCTGT 59.419 43.478 0.00 0.00 0.00 4.00
1669 1992 4.773674 TCGGACCTTATTTGAAGACCTGTA 59.226 41.667 0.00 0.00 0.00 2.74
1670 1993 5.424252 TCGGACCTTATTTGAAGACCTGTAT 59.576 40.000 0.00 0.00 0.00 2.29
1671 1994 6.608405 TCGGACCTTATTTGAAGACCTGTATA 59.392 38.462 0.00 0.00 0.00 1.47
1672 1995 7.124599 TCGGACCTTATTTGAAGACCTGTATAA 59.875 37.037 0.00 0.00 0.00 0.98
1673 1996 7.767198 CGGACCTTATTTGAAGACCTGTATAAA 59.233 37.037 0.00 0.00 0.00 1.40
1674 1997 9.457436 GGACCTTATTTGAAGACCTGTATAAAA 57.543 33.333 0.00 0.00 0.00 1.52
1734 2057 8.578308 TGTTTTGTCACTTGATTGATTCATTC 57.422 30.769 2.31 2.31 33.34 2.67
1735 2058 7.379262 TGTTTTGTCACTTGATTGATTCATTCG 59.621 33.333 4.58 0.00 33.34 3.34
1736 2059 6.799926 TTGTCACTTGATTGATTCATTCGA 57.200 33.333 4.58 2.27 33.34 3.71
1737 2060 6.169419 TGTCACTTGATTGATTCATTCGAC 57.831 37.500 4.58 5.99 33.34 4.20
1738 2061 5.934043 TGTCACTTGATTGATTCATTCGACT 59.066 36.000 11.84 0.00 33.34 4.18
1739 2062 7.096551 TGTCACTTGATTGATTCATTCGACTA 58.903 34.615 11.84 0.00 33.34 2.59
1740 2063 7.602265 TGTCACTTGATTGATTCATTCGACTAA 59.398 33.333 11.84 0.00 33.34 2.24
1741 2064 8.113062 GTCACTTGATTGATTCATTCGACTAAG 58.887 37.037 4.58 5.09 33.34 2.18
1742 2065 8.034804 TCACTTGATTGATTCATTCGACTAAGA 58.965 33.333 10.74 1.60 33.34 2.10
1743 2066 8.824781 CACTTGATTGATTCATTCGACTAAGAT 58.175 33.333 10.74 0.00 33.34 2.40
1744 2067 9.039870 ACTTGATTGATTCATTCGACTAAGATC 57.960 33.333 10.74 0.00 33.34 2.75
1745 2068 9.258826 CTTGATTGATTCATTCGACTAAGATCT 57.741 33.333 0.00 0.00 33.34 2.75
1747 2070 9.905171 TGATTGATTCATTCGACTAAGATCTAG 57.095 33.333 0.00 0.00 0.00 2.43
1748 2071 9.906660 GATTGATTCATTCGACTAAGATCTAGT 57.093 33.333 0.00 0.00 0.00 2.57
1750 2073 9.521503 TTGATTCATTCGACTAAGATCTAGTTG 57.478 33.333 0.00 4.65 0.00 3.16
1751 2074 7.649705 TGATTCATTCGACTAAGATCTAGTTGC 59.350 37.037 0.00 0.00 0.00 4.17
1752 2075 6.451064 TCATTCGACTAAGATCTAGTTGCA 57.549 37.500 0.00 0.00 0.00 4.08
1753 2076 6.266323 TCATTCGACTAAGATCTAGTTGCAC 58.734 40.000 0.00 0.00 0.00 4.57
1754 2077 4.634184 TCGACTAAGATCTAGTTGCACC 57.366 45.455 0.00 0.00 0.00 5.01
1755 2078 4.270834 TCGACTAAGATCTAGTTGCACCT 58.729 43.478 0.00 0.00 0.00 4.00
1770 2093 3.892284 TGCACCTTTTCAGAAACCAGTA 58.108 40.909 0.00 0.00 0.00 2.74
1793 2116 5.690464 AGAGGTTAATCACTTGATGAGCT 57.310 39.130 7.08 7.08 41.91 4.09
1802 2125 2.030579 CACTTGATGAGCTTGCTGATCG 59.969 50.000 15.11 6.52 32.98 3.69
1803 2126 2.277969 CTTGATGAGCTTGCTGATCGT 58.722 47.619 15.11 0.00 32.98 3.73
1805 2128 1.216122 GATGAGCTTGCTGATCGTCC 58.784 55.000 6.34 0.00 40.23 4.79
1812 2135 0.322366 TTGCTGATCGTCCCAATGCA 60.322 50.000 0.00 0.00 0.00 3.96
1848 2204 5.068198 TCAATGAGCTTTATTGATCAAGGGC 59.932 40.000 14.54 13.77 39.05 5.19
1861 2217 3.322211 TCAAGGGCTTTGATTGCAATG 57.678 42.857 18.59 3.13 40.82 2.82
1880 2236 0.861837 GTTGCCTTAGATCATCGGCG 59.138 55.000 0.00 0.00 45.36 6.46
1894 2250 2.904131 GGCGAGGAAAGGAGGGAG 59.096 66.667 0.00 0.00 0.00 4.30
1895 2251 1.686110 GGCGAGGAAAGGAGGGAGA 60.686 63.158 0.00 0.00 0.00 3.71
1897 2253 0.684805 GCGAGGAAAGGAGGGAGAGA 60.685 60.000 0.00 0.00 0.00 3.10
1898 2254 1.398692 CGAGGAAAGGAGGGAGAGAG 58.601 60.000 0.00 0.00 0.00 3.20
1899 2255 1.064314 CGAGGAAAGGAGGGAGAGAGA 60.064 57.143 0.00 0.00 0.00 3.10
1933 2289 4.378459 CCAAAGACATTTACGCCTTGACTC 60.378 45.833 0.00 0.00 0.00 3.36
1934 2290 3.678056 AGACATTTACGCCTTGACTCA 57.322 42.857 0.00 0.00 0.00 3.41
1937 2293 3.740115 ACATTTACGCCTTGACTCACTT 58.260 40.909 0.00 0.00 0.00 3.16
1942 2298 1.294659 CGCCTTGACTCACTTGCTCC 61.295 60.000 0.00 0.00 0.00 4.70
1943 2299 0.036022 GCCTTGACTCACTTGCTCCT 59.964 55.000 0.00 0.00 0.00 3.69
1945 2301 2.856222 CCTTGACTCACTTGCTCCTTT 58.144 47.619 0.00 0.00 0.00 3.11
1946 2302 3.217626 CCTTGACTCACTTGCTCCTTTT 58.782 45.455 0.00 0.00 0.00 2.27
1947 2303 3.633986 CCTTGACTCACTTGCTCCTTTTT 59.366 43.478 0.00 0.00 0.00 1.94
1966 2322 2.270352 TTTTTGCGGGATGACTCACT 57.730 45.000 0.00 0.00 0.00 3.41
1967 2323 2.270352 TTTTGCGGGATGACTCACTT 57.730 45.000 0.00 0.00 0.00 3.16
1968 2324 1.522668 TTTGCGGGATGACTCACTTG 58.477 50.000 0.00 0.00 0.00 3.16
1969 2325 0.955428 TTGCGGGATGACTCACTTGC 60.955 55.000 0.00 0.00 0.00 4.01
1970 2326 1.078848 GCGGGATGACTCACTTGCT 60.079 57.895 0.00 0.00 0.00 3.91
1971 2327 1.086634 GCGGGATGACTCACTTGCTC 61.087 60.000 0.00 0.00 0.00 4.26
1972 2328 0.460987 CGGGATGACTCACTTGCTCC 60.461 60.000 0.00 0.00 0.00 4.70
1973 2329 0.908198 GGGATGACTCACTTGCTCCT 59.092 55.000 0.00 0.00 0.00 3.69
1974 2330 1.280421 GGGATGACTCACTTGCTCCTT 59.720 52.381 0.00 0.00 0.00 3.36
1975 2331 2.290577 GGGATGACTCACTTGCTCCTTT 60.291 50.000 0.00 0.00 0.00 3.11
1976 2332 3.416156 GGATGACTCACTTGCTCCTTTT 58.584 45.455 0.00 0.00 0.00 2.27
1977 2333 3.823304 GGATGACTCACTTGCTCCTTTTT 59.177 43.478 0.00 0.00 0.00 1.94
2007 2363 2.351738 CGAAGCATTCCTCCCAACAAAC 60.352 50.000 0.00 0.00 43.81 2.93
2008 2364 1.632589 AGCATTCCTCCCAACAAACC 58.367 50.000 0.00 0.00 0.00 3.27
2010 2366 1.546029 GCATTCCTCCCAACAAACCTC 59.454 52.381 0.00 0.00 0.00 3.85
2016 2372 3.117322 TCCTCCCAACAAACCTCAAATGA 60.117 43.478 0.00 0.00 0.00 2.57
2017 2373 3.256631 CCTCCCAACAAACCTCAAATGAG 59.743 47.826 3.37 3.37 41.71 2.90
2018 2374 4.144297 CTCCCAACAAACCTCAAATGAGA 58.856 43.478 11.94 0.00 44.74 3.27
2019 2375 4.541705 TCCCAACAAACCTCAAATGAGAA 58.458 39.130 11.94 0.00 44.74 2.87
2020 2376 4.959210 TCCCAACAAACCTCAAATGAGAAA 59.041 37.500 11.94 0.00 44.74 2.52
2050 2406 9.476202 AAAACTAAAATTTACACTCAATGCCTC 57.524 29.630 0.00 0.00 0.00 4.70
2061 2417 1.469703 TCAATGCCTCAACTTCATGCG 59.530 47.619 0.00 0.00 0.00 4.73
2065 2421 1.098050 GCCTCAACTTCATGCGGAAT 58.902 50.000 0.00 0.00 34.32 3.01
2080 2465 5.888691 TGCGGAATAGCACTCAATTTTTA 57.111 34.783 0.00 0.00 42.92 1.52
2083 2468 5.915196 GCGGAATAGCACTCAATTTTTATCC 59.085 40.000 0.00 0.00 37.05 2.59
2118 2542 1.535462 ACTTGATTACCTGTTGTGCGC 59.465 47.619 0.00 0.00 0.00 6.09
2123 2547 1.163420 TTACCTGTTGTGCGCCTGTG 61.163 55.000 4.18 0.00 0.00 3.66
2137 2561 1.070821 CCTGTGTCTATGTGCACGTG 58.929 55.000 21.92 12.28 38.36 4.49
2149 2639 1.135315 GTGCACGTGATCATGGCATTT 60.135 47.619 24.53 2.50 36.79 2.32
2167 2657 2.937469 TTGCTGCATTTTCATACCCG 57.063 45.000 1.84 0.00 0.00 5.28
2168 2658 0.455410 TGCTGCATTTTCATACCCGC 59.545 50.000 0.00 0.00 0.00 6.13
2171 2661 2.357637 GCTGCATTTTCATACCCGCTAA 59.642 45.455 0.00 0.00 0.00 3.09
2175 2665 5.971763 TGCATTTTCATACCCGCTAAAATT 58.028 33.333 0.00 0.00 31.05 1.82
2176 2666 6.402222 TGCATTTTCATACCCGCTAAAATTT 58.598 32.000 0.00 0.00 31.05 1.82
2177 2667 6.876257 TGCATTTTCATACCCGCTAAAATTTT 59.124 30.769 8.75 8.75 31.05 1.82
2178 2668 7.148507 TGCATTTTCATACCCGCTAAAATTTTG 60.149 33.333 13.76 5.05 31.05 2.44
2219 4592 8.467598 TCTTGAATTAACTCGCTAACTCTATGT 58.532 33.333 0.00 0.00 0.00 2.29
2240 4613 7.906199 ATGTACTAGAGCCTTAGTTCTTCAT 57.094 36.000 0.00 2.77 34.98 2.57
2251 4624 3.777106 AGTTCTTCATCACTGGCTTCA 57.223 42.857 0.00 0.00 0.00 3.02
2266 4639 0.532862 CTTCAGCCCGCGGTTATCAT 60.533 55.000 26.12 0.00 0.00 2.45
2341 4714 0.892358 CAGTCCAACATGCAGTGCCT 60.892 55.000 13.72 0.00 0.00 4.75
2344 4717 0.890542 TCCAACATGCAGTGCCTCAC 60.891 55.000 13.72 0.00 34.10 3.51
2345 4718 1.582968 CAACATGCAGTGCCTCACC 59.417 57.895 13.72 0.00 34.49 4.02
2346 4719 1.604593 AACATGCAGTGCCTCACCC 60.605 57.895 13.72 0.00 34.49 4.61
2347 4720 2.072874 AACATGCAGTGCCTCACCCT 62.073 55.000 13.72 0.00 34.49 4.34
2348 4721 1.303888 CATGCAGTGCCTCACCCTT 60.304 57.895 13.72 0.00 34.49 3.95
2349 4722 0.896940 CATGCAGTGCCTCACCCTTT 60.897 55.000 13.72 0.00 34.49 3.11
2350 4723 0.178953 ATGCAGTGCCTCACCCTTTT 60.179 50.000 13.72 0.00 34.49 2.27
2351 4724 0.476338 TGCAGTGCCTCACCCTTTTA 59.524 50.000 13.72 0.00 34.49 1.52
2352 4725 1.168714 GCAGTGCCTCACCCTTTTAG 58.831 55.000 2.85 0.00 34.49 1.85
2353 4726 1.545651 GCAGTGCCTCACCCTTTTAGT 60.546 52.381 2.85 0.00 34.49 2.24
2354 4727 2.290071 GCAGTGCCTCACCCTTTTAGTA 60.290 50.000 2.85 0.00 34.49 1.82
2355 4728 3.809324 GCAGTGCCTCACCCTTTTAGTAA 60.809 47.826 2.85 0.00 34.49 2.24
2356 4729 4.589908 CAGTGCCTCACCCTTTTAGTAAT 58.410 43.478 0.00 0.00 34.49 1.89
2357 4730 4.636206 CAGTGCCTCACCCTTTTAGTAATC 59.364 45.833 0.00 0.00 34.49 1.75
2358 4731 4.536489 AGTGCCTCACCCTTTTAGTAATCT 59.464 41.667 0.00 0.00 34.49 2.40
2359 4732 4.636206 GTGCCTCACCCTTTTAGTAATCTG 59.364 45.833 0.00 0.00 0.00 2.90
2360 4733 4.534500 TGCCTCACCCTTTTAGTAATCTGA 59.466 41.667 0.00 0.00 0.00 3.27
2361 4734 5.191722 TGCCTCACCCTTTTAGTAATCTGAT 59.808 40.000 0.00 0.00 0.00 2.90
2362 4735 6.385759 TGCCTCACCCTTTTAGTAATCTGATA 59.614 38.462 0.00 0.00 0.00 2.15
2363 4736 6.931840 GCCTCACCCTTTTAGTAATCTGATAG 59.068 42.308 0.00 0.00 0.00 2.08
2364 4737 7.202011 GCCTCACCCTTTTAGTAATCTGATAGA 60.202 40.741 0.00 0.00 0.00 1.98
2365 4738 8.145122 CCTCACCCTTTTAGTAATCTGATAGAC 58.855 40.741 0.00 0.00 0.00 2.59
2366 4739 8.603898 TCACCCTTTTAGTAATCTGATAGACA 57.396 34.615 0.00 0.00 0.00 3.41
2367 4740 9.042450 TCACCCTTTTAGTAATCTGATAGACAA 57.958 33.333 0.00 0.00 0.00 3.18
2368 4741 9.319143 CACCCTTTTAGTAATCTGATAGACAAG 57.681 37.037 0.00 0.00 0.00 3.16
2369 4742 8.487028 ACCCTTTTAGTAATCTGATAGACAAGG 58.513 37.037 10.36 10.36 0.00 3.61
2370 4743 8.705594 CCCTTTTAGTAATCTGATAGACAAGGA 58.294 37.037 15.04 0.00 0.00 3.36
2371 4744 9.757227 CCTTTTAGTAATCTGATAGACAAGGAG 57.243 37.037 11.20 3.72 0.00 3.69
2375 4748 7.118496 AGTAATCTGATAGACAAGGAGTTGG 57.882 40.000 0.00 0.00 38.07 3.77
2376 4749 5.365021 AATCTGATAGACAAGGAGTTGGG 57.635 43.478 0.00 0.00 38.07 4.12
2377 4750 3.107601 TCTGATAGACAAGGAGTTGGGG 58.892 50.000 0.00 0.00 38.07 4.96
2378 4751 2.840651 CTGATAGACAAGGAGTTGGGGT 59.159 50.000 0.00 0.00 38.07 4.95
2379 4752 3.256704 TGATAGACAAGGAGTTGGGGTT 58.743 45.455 0.00 0.00 38.07 4.11
2380 4753 4.431378 TGATAGACAAGGAGTTGGGGTTA 58.569 43.478 0.00 0.00 38.07 2.85
2381 4754 4.469945 TGATAGACAAGGAGTTGGGGTTAG 59.530 45.833 0.00 0.00 38.07 2.34
2382 4755 2.702748 AGACAAGGAGTTGGGGTTAGT 58.297 47.619 0.00 0.00 38.07 2.24
2383 4756 3.053826 AGACAAGGAGTTGGGGTTAGTT 58.946 45.455 0.00 0.00 38.07 2.24
2384 4757 4.237018 AGACAAGGAGTTGGGGTTAGTTA 58.763 43.478 0.00 0.00 38.07 2.24
2385 4758 4.286291 AGACAAGGAGTTGGGGTTAGTTAG 59.714 45.833 0.00 0.00 38.07 2.34
2386 4759 3.244805 ACAAGGAGTTGGGGTTAGTTAGC 60.245 47.826 0.00 0.00 38.07 3.09
2387 4760 2.627933 AGGAGTTGGGGTTAGTTAGCA 58.372 47.619 0.00 0.00 0.00 3.49
2388 4761 2.983898 AGGAGTTGGGGTTAGTTAGCAA 59.016 45.455 0.00 0.00 0.00 3.91
2389 4762 3.079578 GGAGTTGGGGTTAGTTAGCAAC 58.920 50.000 0.00 0.00 0.00 4.17
2390 4763 3.079578 GAGTTGGGGTTAGTTAGCAACC 58.920 50.000 0.00 0.00 43.99 3.77
2391 4764 2.714793 AGTTGGGGTTAGTTAGCAACCT 59.285 45.455 4.40 0.00 44.14 3.50
2392 4765 3.079578 GTTGGGGTTAGTTAGCAACCTC 58.920 50.000 4.40 0.85 45.33 3.85
2393 4766 1.631898 TGGGGTTAGTTAGCAACCTCC 59.368 52.381 1.82 3.89 44.63 4.30
2394 4767 1.631898 GGGGTTAGTTAGCAACCTCCA 59.368 52.381 4.40 0.00 44.14 3.86
2395 4768 2.040679 GGGGTTAGTTAGCAACCTCCAA 59.959 50.000 4.40 0.00 44.14 3.53
2396 4769 3.499021 GGGGTTAGTTAGCAACCTCCAAA 60.499 47.826 4.40 0.00 44.14 3.28
2397 4770 3.504906 GGGTTAGTTAGCAACCTCCAAAC 59.495 47.826 4.40 0.00 44.14 2.93
2398 4771 4.395625 GGTTAGTTAGCAACCTCCAAACT 58.604 43.478 0.00 0.00 41.90 2.66
2399 4772 4.825634 GGTTAGTTAGCAACCTCCAAACTT 59.174 41.667 0.00 0.00 41.90 2.66
2400 4773 5.278315 GGTTAGTTAGCAACCTCCAAACTTG 60.278 44.000 0.00 0.00 41.90 3.16
2401 4774 3.898482 AGTTAGCAACCTCCAAACTTGT 58.102 40.909 0.00 0.00 0.00 3.16
2402 4775 4.278310 AGTTAGCAACCTCCAAACTTGTT 58.722 39.130 0.00 0.00 0.00 2.83
2403 4776 4.097892 AGTTAGCAACCTCCAAACTTGTTG 59.902 41.667 0.00 0.00 40.71 3.33
2404 4777 2.733956 AGCAACCTCCAAACTTGTTGA 58.266 42.857 5.49 0.00 40.30 3.18
2405 4778 2.689983 AGCAACCTCCAAACTTGTTGAG 59.310 45.455 5.49 0.00 40.30 3.02
2406 4779 2.427095 GCAACCTCCAAACTTGTTGAGT 59.573 45.455 5.49 0.00 40.30 3.41
2407 4780 3.734902 GCAACCTCCAAACTTGTTGAGTG 60.735 47.826 5.49 0.00 40.30 3.51
2408 4781 3.644966 ACCTCCAAACTTGTTGAGTGA 57.355 42.857 0.00 0.00 39.00 3.41
2409 4782 3.545703 ACCTCCAAACTTGTTGAGTGAG 58.454 45.455 0.00 0.00 39.00 3.51
2410 4783 2.291741 CCTCCAAACTTGTTGAGTGAGC 59.708 50.000 0.00 0.00 39.00 4.26
2411 4784 2.945008 CTCCAAACTTGTTGAGTGAGCA 59.055 45.455 0.00 0.00 39.00 4.26
2412 4785 3.351740 TCCAAACTTGTTGAGTGAGCAA 58.648 40.909 0.00 0.00 39.00 3.91
2413 4786 3.761218 TCCAAACTTGTTGAGTGAGCAAA 59.239 39.130 0.00 0.00 39.00 3.68
2414 4787 4.107622 CCAAACTTGTTGAGTGAGCAAAG 58.892 43.478 0.00 0.00 39.00 2.77
2415 4788 3.427161 AACTTGTTGAGTGAGCAAAGC 57.573 42.857 0.00 0.00 39.00 3.51
2416 4789 1.678101 ACTTGTTGAGTGAGCAAAGCC 59.322 47.619 0.00 0.00 37.17 4.35
2417 4790 1.952296 CTTGTTGAGTGAGCAAAGCCT 59.048 47.619 0.00 0.00 0.00 4.58
2418 4791 1.311859 TGTTGAGTGAGCAAAGCCTG 58.688 50.000 0.00 0.00 0.00 4.85
2419 4792 0.595095 GTTGAGTGAGCAAAGCCTGG 59.405 55.000 0.00 0.00 0.00 4.45
2420 4793 0.183492 TTGAGTGAGCAAAGCCTGGT 59.817 50.000 0.00 0.00 38.89 4.00
2421 4794 0.183492 TGAGTGAGCAAAGCCTGGTT 59.817 50.000 0.00 0.00 35.35 3.67
2422 4795 1.419762 TGAGTGAGCAAAGCCTGGTTA 59.580 47.619 0.00 0.00 35.35 2.85
2423 4796 2.158682 TGAGTGAGCAAAGCCTGGTTAA 60.159 45.455 0.00 0.00 35.35 2.01
2424 4797 2.884639 GAGTGAGCAAAGCCTGGTTAAA 59.115 45.455 0.00 0.00 35.35 1.52
2425 4798 3.295973 AGTGAGCAAAGCCTGGTTAAAA 58.704 40.909 0.00 0.00 35.35 1.52
2426 4799 3.319122 AGTGAGCAAAGCCTGGTTAAAAG 59.681 43.478 0.00 0.00 35.35 2.27
2427 4800 3.068165 GTGAGCAAAGCCTGGTTAAAAGT 59.932 43.478 0.00 0.00 35.35 2.66
2428 4801 3.068024 TGAGCAAAGCCTGGTTAAAAGTG 59.932 43.478 0.00 0.00 35.35 3.16
2429 4802 3.295973 AGCAAAGCCTGGTTAAAAGTGA 58.704 40.909 0.00 0.00 28.96 3.41
2430 4803 3.704061 AGCAAAGCCTGGTTAAAAGTGAA 59.296 39.130 0.00 0.00 28.96 3.18
2431 4804 3.802139 GCAAAGCCTGGTTAAAAGTGAAC 59.198 43.478 0.00 0.00 0.00 3.18
2432 4805 4.679372 GCAAAGCCTGGTTAAAAGTGAACA 60.679 41.667 0.00 0.00 0.00 3.18
2433 4806 5.600696 CAAAGCCTGGTTAAAAGTGAACAT 58.399 37.500 0.00 0.00 0.00 2.71
2434 4807 5.453567 AAGCCTGGTTAAAAGTGAACATC 57.546 39.130 0.00 0.00 0.00 3.06
2435 4808 4.729868 AGCCTGGTTAAAAGTGAACATCT 58.270 39.130 0.00 0.00 0.00 2.90
2436 4809 4.762251 AGCCTGGTTAAAAGTGAACATCTC 59.238 41.667 0.00 0.00 0.00 2.75
2437 4810 4.518970 GCCTGGTTAAAAGTGAACATCTCA 59.481 41.667 0.00 0.00 0.00 3.27
2438 4811 5.009610 GCCTGGTTAAAAGTGAACATCTCAA 59.990 40.000 0.00 0.00 35.22 3.02
2439 4812 6.460953 GCCTGGTTAAAAGTGAACATCTCAAA 60.461 38.462 0.00 0.00 35.22 2.69
2440 4813 7.488322 CCTGGTTAAAAGTGAACATCTCAAAA 58.512 34.615 0.00 0.00 35.22 2.44
2441 4814 7.978975 CCTGGTTAAAAGTGAACATCTCAAAAA 59.021 33.333 0.00 0.00 35.22 1.94
2442 4815 8.696410 TGGTTAAAAGTGAACATCTCAAAAAC 57.304 30.769 0.00 0.00 35.22 2.43
2443 4816 7.762159 TGGTTAAAAGTGAACATCTCAAAAACC 59.238 33.333 0.00 0.00 35.22 3.27
2444 4817 7.223971 GGTTAAAAGTGAACATCTCAAAAACCC 59.776 37.037 0.00 0.00 35.22 4.11
2445 4818 4.568152 AAGTGAACATCTCAAAAACCCG 57.432 40.909 0.00 0.00 35.22 5.28
2446 4819 3.551846 AGTGAACATCTCAAAAACCCGT 58.448 40.909 0.00 0.00 35.22 5.28
2447 4820 3.951680 AGTGAACATCTCAAAAACCCGTT 59.048 39.130 0.00 0.00 35.22 4.44
2448 4821 4.036380 AGTGAACATCTCAAAAACCCGTTC 59.964 41.667 0.00 0.00 35.22 3.95
2449 4822 4.036380 GTGAACATCTCAAAAACCCGTTCT 59.964 41.667 0.00 0.00 35.22 3.01
2450 4823 5.237779 GTGAACATCTCAAAAACCCGTTCTA 59.762 40.000 0.00 0.00 35.22 2.10
2451 4824 6.001460 TGAACATCTCAAAAACCCGTTCTAT 58.999 36.000 0.00 0.00 33.98 1.98
2452 4825 6.148811 TGAACATCTCAAAAACCCGTTCTATC 59.851 38.462 0.00 0.00 33.98 2.08
2453 4826 4.941873 ACATCTCAAAAACCCGTTCTATCC 59.058 41.667 0.00 0.00 0.00 2.59
2454 4827 4.903045 TCTCAAAAACCCGTTCTATCCT 57.097 40.909 0.00 0.00 0.00 3.24
2455 4828 4.828829 TCTCAAAAACCCGTTCTATCCTC 58.171 43.478 0.00 0.00 0.00 3.71
2456 4829 3.939592 CTCAAAAACCCGTTCTATCCTCC 59.060 47.826 0.00 0.00 0.00 4.30
2457 4830 3.328343 TCAAAAACCCGTTCTATCCTCCA 59.672 43.478 0.00 0.00 0.00 3.86
2458 4831 4.076394 CAAAAACCCGTTCTATCCTCCAA 58.924 43.478 0.00 0.00 0.00 3.53
2459 4832 4.586306 AAAACCCGTTCTATCCTCCAAT 57.414 40.909 0.00 0.00 0.00 3.16
2460 4833 4.586306 AAACCCGTTCTATCCTCCAATT 57.414 40.909 0.00 0.00 0.00 2.32
2461 4834 4.586306 AACCCGTTCTATCCTCCAATTT 57.414 40.909 0.00 0.00 0.00 1.82
2462 4835 3.886123 ACCCGTTCTATCCTCCAATTTG 58.114 45.455 0.00 0.00 0.00 2.32
2463 4836 3.214328 CCCGTTCTATCCTCCAATTTGG 58.786 50.000 9.28 9.28 39.43 3.28
2464 4837 3.214328 CCGTTCTATCCTCCAATTTGGG 58.786 50.000 15.37 6.30 38.32 4.12
2465 4838 3.118038 CCGTTCTATCCTCCAATTTGGGA 60.118 47.826 15.37 6.25 38.32 4.37
2466 4839 4.523083 CGTTCTATCCTCCAATTTGGGAA 58.477 43.478 15.37 6.97 38.32 3.97
2467 4840 5.133221 CGTTCTATCCTCCAATTTGGGAAT 58.867 41.667 15.37 8.93 38.32 3.01
2468 4841 6.296026 CGTTCTATCCTCCAATTTGGGAATA 58.704 40.000 15.37 9.51 38.32 1.75
2469 4842 6.428159 CGTTCTATCCTCCAATTTGGGAATAG 59.572 42.308 15.37 16.78 38.32 1.73
2470 4843 5.880901 TCTATCCTCCAATTTGGGAATAGC 58.119 41.667 15.37 0.00 38.32 2.97
2471 4844 4.821532 ATCCTCCAATTTGGGAATAGCT 57.178 40.909 15.37 0.00 38.32 3.32
2472 4845 5.930209 ATCCTCCAATTTGGGAATAGCTA 57.070 39.130 15.37 0.00 38.32 3.32
2473 4846 5.930209 TCCTCCAATTTGGGAATAGCTAT 57.070 39.130 15.37 0.00 38.32 2.97
2474 4847 5.880901 TCCTCCAATTTGGGAATAGCTATC 58.119 41.667 15.37 0.84 38.32 2.08
2475 4848 5.612688 TCCTCCAATTTGGGAATAGCTATCT 59.387 40.000 15.37 0.00 38.32 1.98
2476 4849 5.942826 CCTCCAATTTGGGAATAGCTATCTC 59.057 44.000 15.37 6.99 38.32 2.75
2477 4850 6.240118 CCTCCAATTTGGGAATAGCTATCTCT 60.240 42.308 15.37 0.00 38.32 3.10
2478 4851 6.773638 TCCAATTTGGGAATAGCTATCTCTC 58.226 40.000 15.37 7.63 38.32 3.20
2479 4852 6.560304 TCCAATTTGGGAATAGCTATCTCTCT 59.440 38.462 15.37 0.00 38.32 3.10
2480 4853 7.072961 TCCAATTTGGGAATAGCTATCTCTCTT 59.927 37.037 15.37 0.00 38.32 2.85
2481 4854 7.390162 CCAATTTGGGAATAGCTATCTCTCTTC 59.610 40.741 6.72 0.17 32.67 2.87
2482 4855 6.426646 TTTGGGAATAGCTATCTCTCTTCC 57.573 41.667 6.72 9.66 33.06 3.46
2483 4856 5.079998 TGGGAATAGCTATCTCTCTTCCA 57.920 43.478 18.67 10.16 35.04 3.53
2484 4857 4.835615 TGGGAATAGCTATCTCTCTTCCAC 59.164 45.833 18.67 11.14 35.04 4.02
2485 4858 5.083821 GGGAATAGCTATCTCTCTTCCACT 58.916 45.833 18.67 0.00 35.04 4.00
2486 4859 5.542251 GGGAATAGCTATCTCTCTTCCACTT 59.458 44.000 18.67 0.00 35.04 3.16
2487 4860 6.042666 GGGAATAGCTATCTCTCTTCCACTTT 59.957 42.308 18.67 0.00 35.04 2.66
2488 4861 7.151976 GGAATAGCTATCTCTCTTCCACTTTC 58.848 42.308 6.72 0.00 33.83 2.62
2489 4862 7.015195 GGAATAGCTATCTCTCTTCCACTTTCT 59.985 40.741 6.72 0.00 33.83 2.52
2490 4863 5.852282 AGCTATCTCTCTTCCACTTTCTC 57.148 43.478 0.00 0.00 0.00 2.87
2491 4864 4.649218 AGCTATCTCTCTTCCACTTTCTCC 59.351 45.833 0.00 0.00 0.00 3.71
2492 4865 4.202212 GCTATCTCTCTTCCACTTTCTCCC 60.202 50.000 0.00 0.00 0.00 4.30
2493 4866 2.171840 TCTCTCTTCCACTTTCTCCCG 58.828 52.381 0.00 0.00 0.00 5.14
2494 4867 1.896465 CTCTCTTCCACTTTCTCCCGT 59.104 52.381 0.00 0.00 0.00 5.28
2495 4868 1.618837 TCTCTTCCACTTTCTCCCGTG 59.381 52.381 0.00 0.00 0.00 4.94
2496 4869 0.034896 TCTTCCACTTTCTCCCGTGC 59.965 55.000 0.00 0.00 0.00 5.34
2497 4870 0.250295 CTTCCACTTTCTCCCGTGCA 60.250 55.000 0.00 0.00 0.00 4.57
2498 4871 0.400213 TTCCACTTTCTCCCGTGCAT 59.600 50.000 0.00 0.00 0.00 3.96
2499 4872 0.036388 TCCACTTTCTCCCGTGCATC 60.036 55.000 0.00 0.00 0.00 3.91
2500 4873 0.036010 CCACTTTCTCCCGTGCATCT 60.036 55.000 0.00 0.00 0.00 2.90
2501 4874 1.611673 CCACTTTCTCCCGTGCATCTT 60.612 52.381 0.00 0.00 0.00 2.40
2502 4875 1.734465 CACTTTCTCCCGTGCATCTTC 59.266 52.381 0.00 0.00 0.00 2.87
2503 4876 1.339151 ACTTTCTCCCGTGCATCTTCC 60.339 52.381 0.00 0.00 0.00 3.46
2504 4877 0.984230 TTTCTCCCGTGCATCTTCCT 59.016 50.000 0.00 0.00 0.00 3.36
2505 4878 0.984230 TTCTCCCGTGCATCTTCCTT 59.016 50.000 0.00 0.00 0.00 3.36
2506 4879 0.984230 TCTCCCGTGCATCTTCCTTT 59.016 50.000 0.00 0.00 0.00 3.11
2507 4880 1.351017 TCTCCCGTGCATCTTCCTTTT 59.649 47.619 0.00 0.00 0.00 2.27
2508 4881 2.569853 TCTCCCGTGCATCTTCCTTTTA 59.430 45.455 0.00 0.00 0.00 1.52
2509 4882 3.199946 TCTCCCGTGCATCTTCCTTTTAT 59.800 43.478 0.00 0.00 0.00 1.40
2510 4883 3.947834 CTCCCGTGCATCTTCCTTTTATT 59.052 43.478 0.00 0.00 0.00 1.40
2511 4884 4.340617 TCCCGTGCATCTTCCTTTTATTT 58.659 39.130 0.00 0.00 0.00 1.40
2512 4885 4.770010 TCCCGTGCATCTTCCTTTTATTTT 59.230 37.500 0.00 0.00 0.00 1.82
2513 4886 5.102313 CCCGTGCATCTTCCTTTTATTTTC 58.898 41.667 0.00 0.00 0.00 2.29
2514 4887 5.336372 CCCGTGCATCTTCCTTTTATTTTCA 60.336 40.000 0.00 0.00 0.00 2.69
2515 4888 6.332630 CCGTGCATCTTCCTTTTATTTTCAT 58.667 36.000 0.00 0.00 0.00 2.57
2516 4889 6.473455 CCGTGCATCTTCCTTTTATTTTCATC 59.527 38.462 0.00 0.00 0.00 2.92
2517 4890 7.253422 CGTGCATCTTCCTTTTATTTTCATCT 58.747 34.615 0.00 0.00 0.00 2.90
2518 4891 7.756722 CGTGCATCTTCCTTTTATTTTCATCTT 59.243 33.333 0.00 0.00 0.00 2.40
2519 4892 9.428097 GTGCATCTTCCTTTTATTTTCATCTTT 57.572 29.630 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
532 533 0.832135 ACGAGTTCAGGCCCTTCTCA 60.832 55.000 0.00 0.00 0.00 3.27
699 701 4.007940 TGCCGTCGTCTTTTGCGC 62.008 61.111 0.00 0.00 0.00 6.09
798 809 1.359459 GCGCGCTAGCTAGTTGGTTT 61.359 55.000 26.67 0.00 42.32 3.27
813 824 1.154908 GTATTAACGATGGCGCGCG 60.155 57.895 28.44 28.44 42.48 6.86
816 827 2.378507 GTTGGTATTAACGATGGCGC 57.621 50.000 0.00 0.00 42.48 6.53
857 868 4.034285 AGGGTGGTGATAGAAACAAAGG 57.966 45.455 0.00 0.00 0.00 3.11
894 1157 2.574322 CACAAGCGTACAAAGATGTGC 58.426 47.619 0.00 0.00 40.84 4.57
920 1184 5.253330 ACCTTGGATATAAATACGGGCATG 58.747 41.667 0.00 0.00 0.00 4.06
996 1285 1.305219 GCCGTGGCTTGCTCATTGTA 61.305 55.000 2.98 0.00 38.26 2.41
999 1288 3.064324 GGCCGTGGCTTGCTCATT 61.064 61.111 11.25 0.00 41.60 2.57
1491 1801 2.100631 GTTCATGGTCGGCTCCACG 61.101 63.158 0.00 0.00 40.51 4.94
1545 1855 2.360844 ACAATCAAACACACACACGGA 58.639 42.857 0.00 0.00 0.00 4.69
1575 1898 3.923017 AGCAATCCCGTTTTGAAAGAG 57.077 42.857 0.00 0.00 0.00 2.85
1576 1899 5.776173 TTTAGCAATCCCGTTTTGAAAGA 57.224 34.783 0.00 0.00 0.00 2.52
1577 1900 6.632171 GATTTAGCAATCCCGTTTTGAAAG 57.368 37.500 0.00 0.00 33.74 2.62
1596 1919 6.037172 CGTTAATTCTCAGTCAATCGGGATTT 59.963 38.462 0.00 0.00 0.00 2.17
1601 1924 5.577164 ACTTCGTTAATTCTCAGTCAATCGG 59.423 40.000 0.00 0.00 0.00 4.18
1602 1925 6.528423 AGACTTCGTTAATTCTCAGTCAATCG 59.472 38.462 0.00 0.00 34.33 3.34
1603 1926 7.820044 AGACTTCGTTAATTCTCAGTCAATC 57.180 36.000 0.00 0.00 34.33 2.67
1604 1927 7.872993 TCAAGACTTCGTTAATTCTCAGTCAAT 59.127 33.333 0.00 0.00 34.33 2.57
1606 1929 6.745116 TCAAGACTTCGTTAATTCTCAGTCA 58.255 36.000 0.00 0.00 34.33 3.41
1607 1930 7.820044 ATCAAGACTTCGTTAATTCTCAGTC 57.180 36.000 0.00 0.00 0.00 3.51
1608 1931 7.872993 TCAATCAAGACTTCGTTAATTCTCAGT 59.127 33.333 0.00 0.00 0.00 3.41
1609 1932 8.244494 TCAATCAAGACTTCGTTAATTCTCAG 57.756 34.615 0.00 0.00 0.00 3.35
1610 1933 8.659491 CATCAATCAAGACTTCGTTAATTCTCA 58.341 33.333 0.00 0.00 0.00 3.27
1611 1934 8.660373 ACATCAATCAAGACTTCGTTAATTCTC 58.340 33.333 0.00 0.00 0.00 2.87
1612 1935 8.553459 ACATCAATCAAGACTTCGTTAATTCT 57.447 30.769 0.00 0.00 0.00 2.40
1619 1942 8.755941 CGAATATAACATCAATCAAGACTTCGT 58.244 33.333 0.00 0.00 0.00 3.85
1620 1943 8.755941 ACGAATATAACATCAATCAAGACTTCG 58.244 33.333 0.00 0.00 36.33 3.79
1622 1945 8.755941 CGACGAATATAACATCAATCAAGACTT 58.244 33.333 0.00 0.00 0.00 3.01
1623 1946 7.382488 CCGACGAATATAACATCAATCAAGACT 59.618 37.037 0.00 0.00 0.00 3.24
1624 1947 7.381408 TCCGACGAATATAACATCAATCAAGAC 59.619 37.037 0.00 0.00 0.00 3.01
1625 1948 7.381408 GTCCGACGAATATAACATCAATCAAGA 59.619 37.037 0.00 0.00 0.00 3.02
1626 1949 7.359264 GGTCCGACGAATATAACATCAATCAAG 60.359 40.741 0.00 0.00 0.00 3.02
1627 1950 6.422701 GGTCCGACGAATATAACATCAATCAA 59.577 38.462 0.00 0.00 0.00 2.57
1628 1951 5.924254 GGTCCGACGAATATAACATCAATCA 59.076 40.000 0.00 0.00 0.00 2.57
1629 1952 6.157211 AGGTCCGACGAATATAACATCAATC 58.843 40.000 0.00 0.00 0.00 2.67
1630 1953 6.097915 AGGTCCGACGAATATAACATCAAT 57.902 37.500 0.00 0.00 0.00 2.57
1631 1954 5.524971 AGGTCCGACGAATATAACATCAA 57.475 39.130 0.00 0.00 0.00 2.57
1632 1955 5.524971 AAGGTCCGACGAATATAACATCA 57.475 39.130 0.00 0.00 0.00 3.07
1633 1956 8.433126 CAAATAAGGTCCGACGAATATAACATC 58.567 37.037 0.00 0.00 0.00 3.06
1634 1957 8.145767 TCAAATAAGGTCCGACGAATATAACAT 58.854 33.333 0.00 0.00 0.00 2.71
1635 1958 7.490840 TCAAATAAGGTCCGACGAATATAACA 58.509 34.615 0.00 0.00 0.00 2.41
1636 1959 7.935338 TCAAATAAGGTCCGACGAATATAAC 57.065 36.000 0.00 0.00 0.00 1.89
1637 1960 8.415553 TCTTCAAATAAGGTCCGACGAATATAA 58.584 33.333 0.00 0.00 0.00 0.98
1638 1961 7.864379 GTCTTCAAATAAGGTCCGACGAATATA 59.136 37.037 0.00 0.00 0.00 0.86
1639 1962 6.700520 GTCTTCAAATAAGGTCCGACGAATAT 59.299 38.462 0.00 0.00 0.00 1.28
1640 1963 6.038356 GTCTTCAAATAAGGTCCGACGAATA 58.962 40.000 0.00 0.00 0.00 1.75
1641 1964 4.868734 GTCTTCAAATAAGGTCCGACGAAT 59.131 41.667 0.00 0.00 0.00 3.34
1642 1965 4.240096 GTCTTCAAATAAGGTCCGACGAA 58.760 43.478 0.00 0.00 0.00 3.85
1643 1966 3.367703 GGTCTTCAAATAAGGTCCGACGA 60.368 47.826 0.00 0.00 0.00 4.20
1644 1967 2.928116 GGTCTTCAAATAAGGTCCGACG 59.072 50.000 0.00 0.00 0.00 5.12
1645 1968 3.933332 CAGGTCTTCAAATAAGGTCCGAC 59.067 47.826 0.00 0.00 0.00 4.79
1646 1969 3.581332 ACAGGTCTTCAAATAAGGTCCGA 59.419 43.478 0.00 0.00 0.00 4.55
1647 1970 3.939066 ACAGGTCTTCAAATAAGGTCCG 58.061 45.455 0.00 0.00 0.00 4.79
1648 1971 9.457436 TTTTATACAGGTCTTCAAATAAGGTCC 57.543 33.333 0.00 0.00 0.00 4.46
1708 2031 9.199982 GAATGAATCAATCAAGTGACAAAACAT 57.800 29.630 0.00 0.00 42.54 2.71
1709 2032 7.379262 CGAATGAATCAATCAAGTGACAAAACA 59.621 33.333 0.00 0.00 42.54 2.83
1710 2033 7.591057 TCGAATGAATCAATCAAGTGACAAAAC 59.409 33.333 0.00 0.00 42.54 2.43
1711 2034 7.591057 GTCGAATGAATCAATCAAGTGACAAAA 59.409 33.333 0.00 0.00 42.54 2.44
1712 2035 7.041167 AGTCGAATGAATCAATCAAGTGACAAA 60.041 33.333 0.00 0.00 42.54 2.83
1713 2036 6.427853 AGTCGAATGAATCAATCAAGTGACAA 59.572 34.615 0.00 0.00 42.54 3.18
1714 2037 5.934043 AGTCGAATGAATCAATCAAGTGACA 59.066 36.000 0.00 0.00 42.54 3.58
1715 2038 6.414408 AGTCGAATGAATCAATCAAGTGAC 57.586 37.500 0.00 0.00 42.54 3.67
1716 2039 8.034804 TCTTAGTCGAATGAATCAATCAAGTGA 58.965 33.333 0.00 0.00 42.54 3.41
1717 2040 8.189709 TCTTAGTCGAATGAATCAATCAAGTG 57.810 34.615 0.00 0.00 42.54 3.16
1718 2041 8.954950 ATCTTAGTCGAATGAATCAATCAAGT 57.045 30.769 0.00 0.00 42.54 3.16
1719 2042 9.258826 AGATCTTAGTCGAATGAATCAATCAAG 57.741 33.333 0.00 0.00 42.54 3.02
1721 2044 9.905171 CTAGATCTTAGTCGAATGAATCAATCA 57.095 33.333 0.00 0.00 43.67 2.57
1722 2045 9.906660 ACTAGATCTTAGTCGAATGAATCAATC 57.093 33.333 0.00 0.00 0.00 2.67
1724 2047 9.521503 CAACTAGATCTTAGTCGAATGAATCAA 57.478 33.333 0.00 0.00 0.00 2.57
1725 2048 7.649705 GCAACTAGATCTTAGTCGAATGAATCA 59.350 37.037 0.00 0.00 0.00 2.57
1726 2049 7.649705 TGCAACTAGATCTTAGTCGAATGAATC 59.350 37.037 0.00 0.00 0.00 2.52
1727 2050 7.436673 GTGCAACTAGATCTTAGTCGAATGAAT 59.563 37.037 0.00 0.00 0.00 2.57
1728 2051 6.752351 GTGCAACTAGATCTTAGTCGAATGAA 59.248 38.462 0.00 0.00 0.00 2.57
1729 2052 6.266323 GTGCAACTAGATCTTAGTCGAATGA 58.734 40.000 0.00 0.00 0.00 2.57
1730 2053 5.460419 GGTGCAACTAGATCTTAGTCGAATG 59.540 44.000 0.00 0.00 36.74 2.67
1731 2054 5.361285 AGGTGCAACTAGATCTTAGTCGAAT 59.639 40.000 0.00 0.00 36.74 3.34
1732 2055 4.705507 AGGTGCAACTAGATCTTAGTCGAA 59.294 41.667 0.00 0.00 36.74 3.71
1733 2056 4.270834 AGGTGCAACTAGATCTTAGTCGA 58.729 43.478 0.00 0.00 36.74 4.20
1734 2057 4.640789 AGGTGCAACTAGATCTTAGTCG 57.359 45.455 0.00 0.00 36.74 4.18
1735 2058 6.874134 TGAAAAGGTGCAACTAGATCTTAGTC 59.126 38.462 3.69 0.00 36.74 2.59
1736 2059 6.769512 TGAAAAGGTGCAACTAGATCTTAGT 58.230 36.000 3.69 0.00 36.74 2.24
1737 2060 7.099764 TCTGAAAAGGTGCAACTAGATCTTAG 58.900 38.462 3.69 0.00 36.74 2.18
1738 2061 7.004555 TCTGAAAAGGTGCAACTAGATCTTA 57.995 36.000 3.69 0.00 36.74 2.10
1739 2062 5.869579 TCTGAAAAGGTGCAACTAGATCTT 58.130 37.500 3.69 0.00 36.74 2.40
1740 2063 5.489792 TCTGAAAAGGTGCAACTAGATCT 57.510 39.130 3.69 0.00 36.74 2.75
1741 2064 6.374578 GTTTCTGAAAAGGTGCAACTAGATC 58.625 40.000 3.69 4.41 36.74 2.75
1742 2065 5.241728 GGTTTCTGAAAAGGTGCAACTAGAT 59.758 40.000 3.69 0.00 36.74 1.98
1743 2066 4.578928 GGTTTCTGAAAAGGTGCAACTAGA 59.421 41.667 3.69 0.01 36.74 2.43
1744 2067 4.338118 TGGTTTCTGAAAAGGTGCAACTAG 59.662 41.667 3.69 0.00 36.74 2.57
1745 2068 4.274147 TGGTTTCTGAAAAGGTGCAACTA 58.726 39.130 3.69 0.00 36.74 2.24
1746 2069 3.096092 TGGTTTCTGAAAAGGTGCAACT 58.904 40.909 0.00 0.00 36.74 3.16
1747 2070 3.119137 ACTGGTTTCTGAAAAGGTGCAAC 60.119 43.478 4.09 0.00 0.00 4.17
1748 2071 3.096092 ACTGGTTTCTGAAAAGGTGCAA 58.904 40.909 4.09 0.00 0.00 4.08
1749 2072 2.733956 ACTGGTTTCTGAAAAGGTGCA 58.266 42.857 4.09 0.00 0.00 4.57
1750 2073 4.578928 TCTTACTGGTTTCTGAAAAGGTGC 59.421 41.667 4.09 0.00 0.00 5.01
1751 2074 5.239525 CCTCTTACTGGTTTCTGAAAAGGTG 59.760 44.000 4.09 0.00 0.00 4.00
1752 2075 5.104067 ACCTCTTACTGGTTTCTGAAAAGGT 60.104 40.000 11.26 11.26 33.34 3.50
1753 2076 5.377478 ACCTCTTACTGGTTTCTGAAAAGG 58.623 41.667 4.09 7.88 33.34 3.11
1754 2077 6.944234 AACCTCTTACTGGTTTCTGAAAAG 57.056 37.500 4.09 2.48 44.54 2.27
1755 2078 8.990163 ATTAACCTCTTACTGGTTTCTGAAAA 57.010 30.769 4.09 0.00 44.54 2.29
1770 2093 6.059787 AGCTCATCAAGTGATTAACCTCTT 57.940 37.500 0.00 0.00 35.97 2.85
1793 2116 0.322366 TGCATTGGGACGATCAGCAA 60.322 50.000 0.00 0.00 0.00 3.91
1872 2228 1.676678 CCTCCTTTCCTCGCCGATGA 61.677 60.000 0.00 0.00 0.00 2.92
1880 2236 2.838637 TCTCTCTCCCTCCTTTCCTC 57.161 55.000 0.00 0.00 0.00 3.71
1899 2255 9.893305 GCGTAAATGTCTTTGGCTTAATTATAT 57.107 29.630 0.00 0.00 0.00 0.86
1920 2276 1.070134 AGCAAGTGAGTCAAGGCGTAA 59.930 47.619 0.00 0.00 0.00 3.18
1923 2279 1.294659 GGAGCAAGTGAGTCAAGGCG 61.295 60.000 0.00 0.00 0.00 5.52
1947 2303 2.270352 AGTGAGTCATCCCGCAAAAA 57.730 45.000 0.00 0.00 0.00 1.94
1948 2304 1.879380 CAAGTGAGTCATCCCGCAAAA 59.121 47.619 0.00 0.00 0.00 2.44
1949 2305 1.522668 CAAGTGAGTCATCCCGCAAA 58.477 50.000 0.00 0.00 0.00 3.68
1950 2306 0.955428 GCAAGTGAGTCATCCCGCAA 60.955 55.000 0.00 0.00 0.00 4.85
1951 2307 1.375908 GCAAGTGAGTCATCCCGCA 60.376 57.895 0.00 0.00 0.00 5.69
1952 2308 1.078848 AGCAAGTGAGTCATCCCGC 60.079 57.895 0.00 0.00 0.00 6.13
1953 2309 0.460987 GGAGCAAGTGAGTCATCCCG 60.461 60.000 0.00 0.00 0.00 5.14
1955 2311 2.777832 AAGGAGCAAGTGAGTCATCC 57.222 50.000 0.00 0.00 0.00 3.51
1979 2335 3.081804 GGGAGGAATGCTTCGAGAAAAA 58.918 45.455 0.00 0.00 0.00 1.94
1980 2336 2.039746 TGGGAGGAATGCTTCGAGAAAA 59.960 45.455 0.00 0.00 0.00 2.29
1981 2337 1.628340 TGGGAGGAATGCTTCGAGAAA 59.372 47.619 0.00 0.00 0.00 2.52
1982 2338 1.275666 TGGGAGGAATGCTTCGAGAA 58.724 50.000 0.00 0.00 0.00 2.87
1983 2339 1.066143 GTTGGGAGGAATGCTTCGAGA 60.066 52.381 0.00 0.00 0.00 4.04
1984 2340 1.339055 TGTTGGGAGGAATGCTTCGAG 60.339 52.381 0.00 0.00 0.00 4.04
1985 2341 0.690192 TGTTGGGAGGAATGCTTCGA 59.310 50.000 0.00 0.00 0.00 3.71
1986 2342 1.533625 TTGTTGGGAGGAATGCTTCG 58.466 50.000 0.00 0.00 0.00 3.79
1987 2343 2.029020 GGTTTGTTGGGAGGAATGCTTC 60.029 50.000 0.00 0.00 0.00 3.86
1988 2344 1.970640 GGTTTGTTGGGAGGAATGCTT 59.029 47.619 0.00 0.00 0.00 3.91
1994 2350 3.117322 TCATTTGAGGTTTGTTGGGAGGA 60.117 43.478 0.00 0.00 0.00 3.71
2037 2393 3.213206 TGAAGTTGAGGCATTGAGTGT 57.787 42.857 0.00 0.00 0.00 3.55
2050 2406 2.679837 AGTGCTATTCCGCATGAAGTTG 59.320 45.455 0.00 0.00 42.62 3.16
2061 2417 8.632679 TGATGGATAAAAATTGAGTGCTATTCC 58.367 33.333 0.00 0.00 0.00 3.01
2065 2421 9.851686 AGTATGATGGATAAAAATTGAGTGCTA 57.148 29.630 0.00 0.00 0.00 3.49
2071 2427 9.486123 TTTGGGAGTATGATGGATAAAAATTGA 57.514 29.630 0.00 0.00 0.00 2.57
2074 2430 9.492730 AGTTTTGGGAGTATGATGGATAAAAAT 57.507 29.630 0.00 0.00 0.00 1.82
2080 2465 6.078456 TCAAGTTTTGGGAGTATGATGGAT 57.922 37.500 0.00 0.00 0.00 3.41
2083 2468 7.557719 AGGTAATCAAGTTTTGGGAGTATGATG 59.442 37.037 0.00 0.00 0.00 3.07
2098 2522 1.535462 GCGCACAACAGGTAATCAAGT 59.465 47.619 0.30 0.00 0.00 3.16
2118 2542 1.070821 CACGTGCACATAGACACAGG 58.929 55.000 18.64 0.00 36.57 4.00
2123 2547 2.541346 CCATGATCACGTGCACATAGAC 59.459 50.000 18.64 5.57 0.00 2.59
2149 2639 0.455410 GCGGGTATGAAAATGCAGCA 59.545 50.000 0.00 0.00 0.00 4.41
2166 2656 6.846350 AGTCAGGAGAATCAAAATTTTAGCG 58.154 36.000 2.44 0.00 36.25 4.26
2167 2657 7.121907 AGGAGTCAGGAGAATCAAAATTTTAGC 59.878 37.037 2.44 0.00 40.50 3.09
2168 2658 8.572855 AGGAGTCAGGAGAATCAAAATTTTAG 57.427 34.615 2.44 0.00 40.50 1.85
2171 2661 6.788218 AGAGGAGTCAGGAGAATCAAAATTT 58.212 36.000 0.00 0.00 40.50 1.82
2175 2665 4.840680 TCAAGAGGAGTCAGGAGAATCAAA 59.159 41.667 0.00 0.00 40.50 2.69
2176 2666 4.420206 TCAAGAGGAGTCAGGAGAATCAA 58.580 43.478 0.00 0.00 40.50 2.57
2177 2667 4.053009 TCAAGAGGAGTCAGGAGAATCA 57.947 45.455 0.00 0.00 40.50 2.57
2178 2668 5.612725 ATTCAAGAGGAGTCAGGAGAATC 57.387 43.478 0.00 0.00 38.11 2.52
2219 4592 7.067615 CAGTGATGAAGAACTAAGGCTCTAGTA 59.932 40.741 8.95 0.00 31.72 1.82
2228 4601 5.240891 TGAAGCCAGTGATGAAGAACTAAG 58.759 41.667 0.00 0.00 0.00 2.18
2229 4602 5.227569 TGAAGCCAGTGATGAAGAACTAA 57.772 39.130 0.00 0.00 0.00 2.24
2251 4624 0.108585 ATTCATGATAACCGCGGGCT 59.891 50.000 31.76 18.85 0.00 5.19
2280 4653 2.057140 TCATCGATCAACCCATGGGAT 58.943 47.619 38.07 24.35 38.96 3.85
2341 4714 8.603898 TGTCTATCAGATTACTAAAAGGGTGA 57.396 34.615 0.00 0.00 0.00 4.02
2344 4717 8.705594 TCCTTGTCTATCAGATTACTAAAAGGG 58.294 37.037 0.00 0.00 32.10 3.95
2345 4718 9.757227 CTCCTTGTCTATCAGATTACTAAAAGG 57.243 37.037 0.00 0.00 0.00 3.11
2349 4722 8.696374 CCAACTCCTTGTCTATCAGATTACTAA 58.304 37.037 0.00 0.00 0.00 2.24
2350 4723 7.287927 CCCAACTCCTTGTCTATCAGATTACTA 59.712 40.741 0.00 0.00 0.00 1.82
2351 4724 6.098982 CCCAACTCCTTGTCTATCAGATTACT 59.901 42.308 0.00 0.00 0.00 2.24
2352 4725 6.284459 CCCAACTCCTTGTCTATCAGATTAC 58.716 44.000 0.00 0.00 0.00 1.89
2353 4726 5.366768 CCCCAACTCCTTGTCTATCAGATTA 59.633 44.000 0.00 0.00 0.00 1.75
2354 4727 4.164988 CCCCAACTCCTTGTCTATCAGATT 59.835 45.833 0.00 0.00 0.00 2.40
2355 4728 3.713764 CCCCAACTCCTTGTCTATCAGAT 59.286 47.826 0.00 0.00 0.00 2.90
2356 4729 3.107601 CCCCAACTCCTTGTCTATCAGA 58.892 50.000 0.00 0.00 0.00 3.27
2357 4730 2.840651 ACCCCAACTCCTTGTCTATCAG 59.159 50.000 0.00 0.00 0.00 2.90
2358 4731 2.915869 ACCCCAACTCCTTGTCTATCA 58.084 47.619 0.00 0.00 0.00 2.15
2359 4732 4.470304 ACTAACCCCAACTCCTTGTCTATC 59.530 45.833 0.00 0.00 0.00 2.08
2360 4733 4.436079 ACTAACCCCAACTCCTTGTCTAT 58.564 43.478 0.00 0.00 0.00 1.98
2361 4734 3.865571 ACTAACCCCAACTCCTTGTCTA 58.134 45.455 0.00 0.00 0.00 2.59
2362 4735 2.702748 ACTAACCCCAACTCCTTGTCT 58.297 47.619 0.00 0.00 0.00 3.41
2363 4736 3.503800 AACTAACCCCAACTCCTTGTC 57.496 47.619 0.00 0.00 0.00 3.18
2364 4737 3.244805 GCTAACTAACCCCAACTCCTTGT 60.245 47.826 0.00 0.00 0.00 3.16
2365 4738 3.244770 TGCTAACTAACCCCAACTCCTTG 60.245 47.826 0.00 0.00 0.00 3.61
2366 4739 2.983898 TGCTAACTAACCCCAACTCCTT 59.016 45.455 0.00 0.00 0.00 3.36
2367 4740 2.627933 TGCTAACTAACCCCAACTCCT 58.372 47.619 0.00 0.00 0.00 3.69
2368 4741 3.079578 GTTGCTAACTAACCCCAACTCC 58.920 50.000 0.00 0.00 34.51 3.85
2369 4742 3.079578 GGTTGCTAACTAACCCCAACTC 58.920 50.000 0.00 0.00 41.34 3.01
2370 4743 2.714793 AGGTTGCTAACTAACCCCAACT 59.285 45.455 0.00 0.00 46.93 3.16
2371 4744 3.079578 GAGGTTGCTAACTAACCCCAAC 58.920 50.000 0.00 0.00 46.93 3.77
2372 4745 2.040679 GGAGGTTGCTAACTAACCCCAA 59.959 50.000 0.00 0.00 46.93 4.12
2373 4746 1.631898 GGAGGTTGCTAACTAACCCCA 59.368 52.381 0.00 0.00 46.93 4.96
2374 4747 1.631898 TGGAGGTTGCTAACTAACCCC 59.368 52.381 0.00 0.00 46.93 4.95
2375 4748 3.428413 TTGGAGGTTGCTAACTAACCC 57.572 47.619 0.00 0.00 46.93 4.11
2376 4749 4.395625 AGTTTGGAGGTTGCTAACTAACC 58.604 43.478 0.00 0.00 46.26 2.85
2377 4750 5.298527 ACAAGTTTGGAGGTTGCTAACTAAC 59.701 40.000 0.00 0.00 0.00 2.34
2378 4751 5.442391 ACAAGTTTGGAGGTTGCTAACTAA 58.558 37.500 0.00 0.00 0.00 2.24
2379 4752 5.043737 ACAAGTTTGGAGGTTGCTAACTA 57.956 39.130 0.00 0.00 0.00 2.24
2380 4753 3.898482 ACAAGTTTGGAGGTTGCTAACT 58.102 40.909 0.00 0.00 0.00 2.24
2381 4754 4.097286 TCAACAAGTTTGGAGGTTGCTAAC 59.903 41.667 0.00 0.00 40.20 2.34
2382 4755 4.274147 TCAACAAGTTTGGAGGTTGCTAA 58.726 39.130 0.00 0.00 40.20 3.09
2383 4756 3.882888 CTCAACAAGTTTGGAGGTTGCTA 59.117 43.478 0.00 0.00 40.20 3.49
2384 4757 2.689983 CTCAACAAGTTTGGAGGTTGCT 59.310 45.455 0.00 0.00 40.20 3.91
2385 4758 2.427095 ACTCAACAAGTTTGGAGGTTGC 59.573 45.455 0.00 0.00 40.20 4.17
2386 4759 3.694072 TCACTCAACAAGTTTGGAGGTTG 59.306 43.478 0.00 0.00 41.39 3.77
2387 4760 3.947834 CTCACTCAACAAGTTTGGAGGTT 59.052 43.478 5.60 0.00 35.45 3.50
2388 4761 3.545703 CTCACTCAACAAGTTTGGAGGT 58.454 45.455 5.60 0.00 35.45 3.85
2389 4762 2.291741 GCTCACTCAACAAGTTTGGAGG 59.708 50.000 5.60 0.00 35.45 4.30
2390 4763 2.945008 TGCTCACTCAACAAGTTTGGAG 59.055 45.455 0.00 0.00 35.45 3.86
2391 4764 2.997980 TGCTCACTCAACAAGTTTGGA 58.002 42.857 0.00 0.00 35.45 3.53
2392 4765 3.781079 TTGCTCACTCAACAAGTTTGG 57.219 42.857 0.00 0.00 35.45 3.28
2393 4766 3.549070 GCTTTGCTCACTCAACAAGTTTG 59.451 43.478 0.00 0.00 35.45 2.93
2394 4767 3.429410 GGCTTTGCTCACTCAACAAGTTT 60.429 43.478 0.00 0.00 35.45 2.66
2395 4768 2.099756 GGCTTTGCTCACTCAACAAGTT 59.900 45.455 0.00 0.00 35.45 2.66
2396 4769 1.678101 GGCTTTGCTCACTCAACAAGT 59.322 47.619 0.00 0.00 39.44 3.16
2397 4770 1.952296 AGGCTTTGCTCACTCAACAAG 59.048 47.619 0.00 0.00 0.00 3.16
2398 4771 1.677576 CAGGCTTTGCTCACTCAACAA 59.322 47.619 0.00 0.00 0.00 2.83
2399 4772 1.311859 CAGGCTTTGCTCACTCAACA 58.688 50.000 0.00 0.00 0.00 3.33
2400 4773 0.595095 CCAGGCTTTGCTCACTCAAC 59.405 55.000 0.00 0.00 0.00 3.18
2401 4774 0.183492 ACCAGGCTTTGCTCACTCAA 59.817 50.000 0.00 0.00 0.00 3.02
2402 4775 0.183492 AACCAGGCTTTGCTCACTCA 59.817 50.000 0.00 0.00 0.00 3.41
2403 4776 2.185004 TAACCAGGCTTTGCTCACTC 57.815 50.000 0.00 0.00 0.00 3.51
2404 4777 2.656947 TTAACCAGGCTTTGCTCACT 57.343 45.000 0.00 0.00 0.00 3.41
2405 4778 3.068165 ACTTTTAACCAGGCTTTGCTCAC 59.932 43.478 0.00 0.00 0.00 3.51
2406 4779 3.068024 CACTTTTAACCAGGCTTTGCTCA 59.932 43.478 0.00 0.00 0.00 4.26
2407 4780 3.317993 TCACTTTTAACCAGGCTTTGCTC 59.682 43.478 0.00 0.00 0.00 4.26
2408 4781 3.295973 TCACTTTTAACCAGGCTTTGCT 58.704 40.909 0.00 0.00 0.00 3.91
2409 4782 3.726291 TCACTTTTAACCAGGCTTTGC 57.274 42.857 0.00 0.00 0.00 3.68
2410 4783 5.004922 TGTTCACTTTTAACCAGGCTTTG 57.995 39.130 0.00 0.00 0.00 2.77
2411 4784 5.598417 AGATGTTCACTTTTAACCAGGCTTT 59.402 36.000 0.00 0.00 0.00 3.51
2412 4785 5.140454 AGATGTTCACTTTTAACCAGGCTT 58.860 37.500 0.00 0.00 0.00 4.35
2413 4786 4.729868 AGATGTTCACTTTTAACCAGGCT 58.270 39.130 0.00 0.00 0.00 4.58
2414 4787 4.518970 TGAGATGTTCACTTTTAACCAGGC 59.481 41.667 0.00 0.00 0.00 4.85
2415 4788 6.633500 TTGAGATGTTCACTTTTAACCAGG 57.367 37.500 0.00 0.00 34.94 4.45
2416 4789 8.807581 GTTTTTGAGATGTTCACTTTTAACCAG 58.192 33.333 0.00 0.00 34.94 4.00
2417 4790 7.762159 GGTTTTTGAGATGTTCACTTTTAACCA 59.238 33.333 0.00 0.00 34.94 3.67
2418 4791 7.223971 GGGTTTTTGAGATGTTCACTTTTAACC 59.776 37.037 0.00 0.00 34.94 2.85
2419 4792 7.043656 CGGGTTTTTGAGATGTTCACTTTTAAC 60.044 37.037 0.00 0.00 34.94 2.01
2420 4793 6.975772 CGGGTTTTTGAGATGTTCACTTTTAA 59.024 34.615 0.00 0.00 34.94 1.52
2421 4794 6.095720 ACGGGTTTTTGAGATGTTCACTTTTA 59.904 34.615 0.00 0.00 34.94 1.52
2422 4795 5.105513 ACGGGTTTTTGAGATGTTCACTTTT 60.106 36.000 0.00 0.00 34.94 2.27
2423 4796 4.401202 ACGGGTTTTTGAGATGTTCACTTT 59.599 37.500 0.00 0.00 34.94 2.66
2424 4797 3.951680 ACGGGTTTTTGAGATGTTCACTT 59.048 39.130 0.00 0.00 34.94 3.16
2425 4798 3.551846 ACGGGTTTTTGAGATGTTCACT 58.448 40.909 0.00 0.00 34.94 3.41
2426 4799 3.982576 ACGGGTTTTTGAGATGTTCAC 57.017 42.857 0.00 0.00 34.94 3.18
2427 4800 4.204012 AGAACGGGTTTTTGAGATGTTCA 58.796 39.130 5.18 0.00 37.34 3.18
2428 4801 4.830826 AGAACGGGTTTTTGAGATGTTC 57.169 40.909 0.00 0.00 35.64 3.18
2429 4802 5.414765 GGATAGAACGGGTTTTTGAGATGTT 59.585 40.000 0.00 0.00 0.00 2.71
2430 4803 4.941873 GGATAGAACGGGTTTTTGAGATGT 59.058 41.667 0.00 0.00 0.00 3.06
2431 4804 5.186198 AGGATAGAACGGGTTTTTGAGATG 58.814 41.667 0.00 0.00 0.00 2.90
2432 4805 5.429130 GAGGATAGAACGGGTTTTTGAGAT 58.571 41.667 0.00 0.00 0.00 2.75
2433 4806 4.323257 GGAGGATAGAACGGGTTTTTGAGA 60.323 45.833 0.00 0.00 0.00 3.27
2434 4807 3.939592 GGAGGATAGAACGGGTTTTTGAG 59.060 47.826 0.00 0.00 0.00 3.02
2435 4808 3.328343 TGGAGGATAGAACGGGTTTTTGA 59.672 43.478 0.00 0.00 0.00 2.69
2436 4809 3.681593 TGGAGGATAGAACGGGTTTTTG 58.318 45.455 0.00 0.00 0.00 2.44
2437 4810 4.376225 TTGGAGGATAGAACGGGTTTTT 57.624 40.909 0.00 0.00 0.00 1.94
2438 4811 4.586306 ATTGGAGGATAGAACGGGTTTT 57.414 40.909 0.00 0.00 0.00 2.43
2439 4812 4.586306 AATTGGAGGATAGAACGGGTTT 57.414 40.909 0.00 0.00 0.00 3.27
2440 4813 4.270008 CAAATTGGAGGATAGAACGGGTT 58.730 43.478 0.00 0.00 0.00 4.11
2441 4814 3.371595 CCAAATTGGAGGATAGAACGGGT 60.372 47.826 6.04 0.00 40.96 5.28
2442 4815 3.214328 CCAAATTGGAGGATAGAACGGG 58.786 50.000 6.04 0.00 40.96 5.28
2443 4816 3.118038 TCCCAAATTGGAGGATAGAACGG 60.118 47.826 14.62 0.00 40.96 4.44
2444 4817 4.150897 TCCCAAATTGGAGGATAGAACG 57.849 45.455 14.62 0.00 40.96 3.95
2445 4818 6.207614 GCTATTCCCAAATTGGAGGATAGAAC 59.792 42.308 22.34 9.79 40.96 3.01
2446 4819 6.103205 AGCTATTCCCAAATTGGAGGATAGAA 59.897 38.462 22.34 13.97 40.96 2.10
2447 4820 5.612688 AGCTATTCCCAAATTGGAGGATAGA 59.387 40.000 22.34 7.39 40.96 1.98
2448 4821 5.885465 AGCTATTCCCAAATTGGAGGATAG 58.115 41.667 14.62 16.47 40.96 2.08
2449 4822 5.930209 AGCTATTCCCAAATTGGAGGATA 57.070 39.130 14.62 7.36 40.96 2.59
2450 4823 4.821532 AGCTATTCCCAAATTGGAGGAT 57.178 40.909 14.62 6.56 40.96 3.24
2451 4824 5.612688 AGATAGCTATTCCCAAATTGGAGGA 59.387 40.000 14.62 0.00 40.96 3.71
2452 4825 5.885465 AGATAGCTATTCCCAAATTGGAGG 58.115 41.667 14.62 0.00 40.96 4.30
2453 4826 6.777782 AGAGATAGCTATTCCCAAATTGGAG 58.222 40.000 14.62 3.75 40.96 3.86
2454 4827 6.560304 AGAGAGATAGCTATTCCCAAATTGGA 59.440 38.462 14.62 0.00 40.96 3.53
2455 4828 6.777782 AGAGAGATAGCTATTCCCAAATTGG 58.222 40.000 7.87 4.74 37.25 3.16
2456 4829 7.390162 GGAAGAGAGATAGCTATTCCCAAATTG 59.610 40.741 7.87 0.00 45.88 2.32
2457 4830 7.457561 GGAAGAGAGATAGCTATTCCCAAATT 58.542 38.462 7.87 0.00 45.88 1.82
2458 4831 7.014988 GGAAGAGAGATAGCTATTCCCAAAT 57.985 40.000 7.87 0.00 45.88 2.32
2459 4832 6.426646 GGAAGAGAGATAGCTATTCCCAAA 57.573 41.667 7.87 0.00 45.88 3.28
2464 4837 7.951591 AGAAAGTGGAAGAGAGATAGCTATTC 58.048 38.462 7.87 7.61 35.84 1.75
2465 4838 7.015195 GGAGAAAGTGGAAGAGAGATAGCTATT 59.985 40.741 7.87 0.00 0.00 1.73
2466 4839 6.493458 GGAGAAAGTGGAAGAGAGATAGCTAT 59.507 42.308 5.76 5.76 0.00 2.97
2467 4840 5.830991 GGAGAAAGTGGAAGAGAGATAGCTA 59.169 44.000 0.00 0.00 0.00 3.32
2468 4841 4.649218 GGAGAAAGTGGAAGAGAGATAGCT 59.351 45.833 0.00 0.00 0.00 3.32
2469 4842 4.202212 GGGAGAAAGTGGAAGAGAGATAGC 60.202 50.000 0.00 0.00 0.00 2.97
2470 4843 4.037446 CGGGAGAAAGTGGAAGAGAGATAG 59.963 50.000 0.00 0.00 0.00 2.08
2471 4844 3.954904 CGGGAGAAAGTGGAAGAGAGATA 59.045 47.826 0.00 0.00 0.00 1.98
2472 4845 2.763448 CGGGAGAAAGTGGAAGAGAGAT 59.237 50.000 0.00 0.00 0.00 2.75
2473 4846 2.171840 CGGGAGAAAGTGGAAGAGAGA 58.828 52.381 0.00 0.00 0.00 3.10
2474 4847 1.896465 ACGGGAGAAAGTGGAAGAGAG 59.104 52.381 0.00 0.00 0.00 3.20
2475 4848 1.618837 CACGGGAGAAAGTGGAAGAGA 59.381 52.381 0.00 0.00 34.93 3.10
2476 4849 1.941668 GCACGGGAGAAAGTGGAAGAG 60.942 57.143 0.00 0.00 38.68 2.85
2477 4850 0.034896 GCACGGGAGAAAGTGGAAGA 59.965 55.000 0.00 0.00 38.68 2.87
2478 4851 0.250295 TGCACGGGAGAAAGTGGAAG 60.250 55.000 0.00 0.00 35.82 3.46
2479 4852 0.400213 ATGCACGGGAGAAAGTGGAA 59.600 50.000 0.00 0.00 41.73 3.53
2480 4853 0.036388 GATGCACGGGAGAAAGTGGA 60.036 55.000 0.00 0.00 42.55 4.02
2481 4854 0.036010 AGATGCACGGGAGAAAGTGG 60.036 55.000 0.00 0.00 38.68 4.00
2482 4855 1.734465 GAAGATGCACGGGAGAAAGTG 59.266 52.381 0.00 0.00 41.01 3.16
2483 4856 1.339151 GGAAGATGCACGGGAGAAAGT 60.339 52.381 0.00 0.00 0.00 2.66
2484 4857 1.065854 AGGAAGATGCACGGGAGAAAG 60.066 52.381 0.00 0.00 0.00 2.62
2485 4858 0.984230 AGGAAGATGCACGGGAGAAA 59.016 50.000 0.00 0.00 0.00 2.52
2486 4859 0.984230 AAGGAAGATGCACGGGAGAA 59.016 50.000 0.00 0.00 0.00 2.87
2487 4860 0.984230 AAAGGAAGATGCACGGGAGA 59.016 50.000 0.00 0.00 0.00 3.71
2488 4861 1.826385 AAAAGGAAGATGCACGGGAG 58.174 50.000 0.00 0.00 0.00 4.30
2489 4862 3.644966 ATAAAAGGAAGATGCACGGGA 57.355 42.857 0.00 0.00 0.00 5.14
2490 4863 4.718940 AAATAAAAGGAAGATGCACGGG 57.281 40.909 0.00 0.00 0.00 5.28
2491 4864 5.708948 TGAAAATAAAAGGAAGATGCACGG 58.291 37.500 0.00 0.00 0.00 4.94
2492 4865 7.253422 AGATGAAAATAAAAGGAAGATGCACG 58.747 34.615 0.00 0.00 0.00 5.34
2493 4866 8.992835 AAGATGAAAATAAAAGGAAGATGCAC 57.007 30.769 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.