Multiple sequence alignment - TraesCS6A01G115100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G115100 chr6A 100.000 4795 0 0 1 4795 85016929 85021723 0.000000e+00 8855
1 TraesCS6A01G115100 chr6A 91.279 516 22 1 4303 4795 530605720 530606235 0.000000e+00 682
2 TraesCS6A01G115100 chr6D 91.107 3677 220 64 369 3997 67513879 67517496 0.000000e+00 4879
3 TraesCS6A01G115100 chr6D 95.556 360 15 1 9 367 70532615 70532256 4.160000e-160 575
4 TraesCS6A01G115100 chr6D 78.947 190 39 1 1119 1308 79598498 79598686 1.400000e-25 128
5 TraesCS6A01G115100 chr6B 92.452 2610 125 23 1417 3994 142499776 142502345 0.000000e+00 3663
6 TraesCS6A01G115100 chr6B 86.856 738 32 28 718 1417 142499023 142499733 0.000000e+00 765
7 TraesCS6A01G115100 chr6B 87.046 633 47 14 4195 4795 602497717 602498346 0.000000e+00 682
8 TraesCS6A01G115100 chr6B 92.500 160 11 1 458 617 142498870 142499028 1.340000e-55 228
9 TraesCS6A01G115100 chr6B 96.591 88 3 0 369 456 142498722 142498809 3.870000e-31 147
10 TraesCS6A01G115100 chr5A 92.327 782 35 8 4038 4795 211461342 211460562 0.000000e+00 1088
11 TraesCS6A01G115100 chr4D 89.364 818 41 17 4022 4795 12185458 12186273 0.000000e+00 987
12 TraesCS6A01G115100 chr4D 88.509 818 47 16 4022 4795 505819603 505820417 0.000000e+00 946
13 TraesCS6A01G115100 chr4D 87.714 700 39 22 4140 4795 64746655 64747351 0.000000e+00 773
14 TraesCS6A01G115100 chr4D 95.556 360 14 2 9 367 296664630 296664272 4.160000e-160 575
15 TraesCS6A01G115100 chr7D 89.223 798 58 12 4022 4795 607101719 607102512 0.000000e+00 972
16 TraesCS6A01G115100 chr7D 87.776 769 48 11 4070 4795 75981229 75981994 0.000000e+00 857
17 TraesCS6A01G115100 chr7D 96.122 361 13 1 9 368 576947699 576947339 5.350000e-164 588
18 TraesCS6A01G115100 chr7D 95.556 360 14 2 9 367 554683503 554683861 4.160000e-160 575
19 TraesCS6A01G115100 chr4B 89.093 816 43 18 4024 4795 132858260 132857447 0.000000e+00 972
20 TraesCS6A01G115100 chr4B 86.675 818 52 24 4022 4795 32488464 32489268 0.000000e+00 854
21 TraesCS6A01G115100 chr4A 87.775 818 54 15 4022 4795 545879434 545880249 0.000000e+00 915
22 TraesCS6A01G115100 chr2B 87.195 820 55 18 4022 4795 531161362 531162177 0.000000e+00 887
23 TraesCS6A01G115100 chr1B 87.132 816 58 12 4023 4794 60064893 60065705 0.000000e+00 881
24 TraesCS6A01G115100 chr1B 96.122 361 10 4 9 367 323682006 323682364 1.920000e-163 586
25 TraesCS6A01G115100 chr5B 86.797 818 63 15 4022 4795 584323896 584324712 0.000000e+00 870
26 TraesCS6A01G115100 chr5D 88.798 732 47 16 4022 4721 46994201 46994929 0.000000e+00 865
27 TraesCS6A01G115100 chr5D 95.556 360 15 1 9 367 333369067 333368708 4.160000e-160 575
28 TraesCS6A01G115100 chr3A 86.797 818 46 17 4022 4795 125445474 125444675 0.000000e+00 856
29 TraesCS6A01G115100 chr3A 95.845 361 13 2 9 367 113684959 113684599 2.490000e-162 582
30 TraesCS6A01G115100 chr7B 87.040 679 41 16 4040 4674 565786382 565785707 0.000000e+00 723
31 TraesCS6A01G115100 chr1A 95.604 364 14 2 9 371 549409578 549409940 2.490000e-162 582
32 TraesCS6A01G115100 chr3D 95.568 361 15 1 9 368 588339703 588339343 1.160000e-160 577
33 TraesCS6A01G115100 chr3D 85.602 507 25 10 4333 4795 309655488 309655990 5.580000e-134 488


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G115100 chr6A 85016929 85021723 4794 False 8855.00 8855 100.00000 1 4795 1 chr6A.!!$F1 4794
1 TraesCS6A01G115100 chr6A 530605720 530606235 515 False 682.00 682 91.27900 4303 4795 1 chr6A.!!$F2 492
2 TraesCS6A01G115100 chr6D 67513879 67517496 3617 False 4879.00 4879 91.10700 369 3997 1 chr6D.!!$F1 3628
3 TraesCS6A01G115100 chr6B 142498722 142502345 3623 False 1200.75 3663 92.09975 369 3994 4 chr6B.!!$F2 3625
4 TraesCS6A01G115100 chr6B 602497717 602498346 629 False 682.00 682 87.04600 4195 4795 1 chr6B.!!$F1 600
5 TraesCS6A01G115100 chr5A 211460562 211461342 780 True 1088.00 1088 92.32700 4038 4795 1 chr5A.!!$R1 757
6 TraesCS6A01G115100 chr4D 12185458 12186273 815 False 987.00 987 89.36400 4022 4795 1 chr4D.!!$F1 773
7 TraesCS6A01G115100 chr4D 505819603 505820417 814 False 946.00 946 88.50900 4022 4795 1 chr4D.!!$F3 773
8 TraesCS6A01G115100 chr4D 64746655 64747351 696 False 773.00 773 87.71400 4140 4795 1 chr4D.!!$F2 655
9 TraesCS6A01G115100 chr7D 607101719 607102512 793 False 972.00 972 89.22300 4022 4795 1 chr7D.!!$F3 773
10 TraesCS6A01G115100 chr7D 75981229 75981994 765 False 857.00 857 87.77600 4070 4795 1 chr7D.!!$F1 725
11 TraesCS6A01G115100 chr4B 132857447 132858260 813 True 972.00 972 89.09300 4024 4795 1 chr4B.!!$R1 771
12 TraesCS6A01G115100 chr4B 32488464 32489268 804 False 854.00 854 86.67500 4022 4795 1 chr4B.!!$F1 773
13 TraesCS6A01G115100 chr4A 545879434 545880249 815 False 915.00 915 87.77500 4022 4795 1 chr4A.!!$F1 773
14 TraesCS6A01G115100 chr2B 531161362 531162177 815 False 887.00 887 87.19500 4022 4795 1 chr2B.!!$F1 773
15 TraesCS6A01G115100 chr1B 60064893 60065705 812 False 881.00 881 87.13200 4023 4794 1 chr1B.!!$F1 771
16 TraesCS6A01G115100 chr5B 584323896 584324712 816 False 870.00 870 86.79700 4022 4795 1 chr5B.!!$F1 773
17 TraesCS6A01G115100 chr5D 46994201 46994929 728 False 865.00 865 88.79800 4022 4721 1 chr5D.!!$F1 699
18 TraesCS6A01G115100 chr3A 125444675 125445474 799 True 856.00 856 86.79700 4022 4795 1 chr3A.!!$R2 773
19 TraesCS6A01G115100 chr7B 565785707 565786382 675 True 723.00 723 87.04000 4040 4674 1 chr7B.!!$R1 634
20 TraesCS6A01G115100 chr3D 309655488 309655990 502 False 488.00 488 85.60200 4333 4795 1 chr3D.!!$F1 462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
347 348 0.319469 CAACCATCCACGCAAAACCC 60.319 55.000 0.00 0.0 0.00 4.11 F
1483 1622 0.105224 TCTGTTTCGTCGCCCAGAAA 59.895 50.000 6.04 0.0 34.40 2.52 F
3313 3495 1.202452 TGCAGATCACCAGTATCGCAG 60.202 52.381 0.00 0.0 32.83 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1853 2003 1.070134 GCCTGTGTCTGTGTGTAAGGA 59.930 52.381 0.00 0.0 0.00 3.36 R
3416 3598 1.026182 TGAACAGCGCCACATGGATC 61.026 55.000 2.29 0.0 37.39 3.36 R
4740 5013 1.289066 CATGTCCGACTCACACCGT 59.711 57.895 0.00 0.0 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.517453 TGTTACAACAACTTACCTGATGGC 59.483 41.667 0.00 0.00 35.67 4.40
24 25 2.151202 ACAACAACTTACCTGATGGCG 58.849 47.619 0.00 0.00 36.63 5.69
25 26 2.224426 ACAACAACTTACCTGATGGCGA 60.224 45.455 0.00 0.00 36.63 5.54
26 27 2.811431 CAACAACTTACCTGATGGCGAA 59.189 45.455 0.00 0.00 36.63 4.70
27 28 3.350219 ACAACTTACCTGATGGCGAAT 57.650 42.857 0.00 0.00 36.63 3.34
28 29 3.270877 ACAACTTACCTGATGGCGAATC 58.729 45.455 0.00 0.00 36.63 2.52
29 30 2.614057 CAACTTACCTGATGGCGAATCC 59.386 50.000 0.00 0.00 36.63 3.01
38 39 3.715871 TGGCGAATCCAGTGTTTCA 57.284 47.368 0.00 0.00 40.72 2.69
39 40 2.198827 TGGCGAATCCAGTGTTTCAT 57.801 45.000 0.00 0.00 40.72 2.57
40 41 1.811965 TGGCGAATCCAGTGTTTCATG 59.188 47.619 0.00 0.00 40.72 3.07
41 42 1.468054 GGCGAATCCAGTGTTTCATGC 60.468 52.381 0.00 1.20 34.01 4.06
42 43 1.470098 GCGAATCCAGTGTTTCATGCT 59.530 47.619 0.00 0.00 0.00 3.79
43 44 2.476854 GCGAATCCAGTGTTTCATGCTC 60.477 50.000 0.00 0.00 0.00 4.26
44 45 2.222886 CGAATCCAGTGTTTCATGCTCG 60.223 50.000 0.00 0.00 0.00 5.03
45 46 1.742761 ATCCAGTGTTTCATGCTCGG 58.257 50.000 0.00 0.00 0.00 4.63
46 47 0.684535 TCCAGTGTTTCATGCTCGGA 59.315 50.000 0.00 0.00 0.00 4.55
47 48 0.798776 CCAGTGTTTCATGCTCGGAC 59.201 55.000 0.00 0.00 0.00 4.79
48 49 1.609061 CCAGTGTTTCATGCTCGGACT 60.609 52.381 0.00 0.00 0.00 3.85
49 50 2.353704 CCAGTGTTTCATGCTCGGACTA 60.354 50.000 0.00 0.00 0.00 2.59
50 51 3.325870 CAGTGTTTCATGCTCGGACTAA 58.674 45.455 0.00 0.00 0.00 2.24
51 52 3.745975 CAGTGTTTCATGCTCGGACTAAA 59.254 43.478 0.00 0.00 0.00 1.85
52 53 3.746492 AGTGTTTCATGCTCGGACTAAAC 59.254 43.478 0.00 0.00 0.00 2.01
53 54 3.496884 GTGTTTCATGCTCGGACTAAACA 59.503 43.478 0.00 0.00 35.21 2.83
54 55 3.496884 TGTTTCATGCTCGGACTAAACAC 59.503 43.478 0.00 0.00 33.31 3.32
55 56 3.394674 TTCATGCTCGGACTAAACACA 57.605 42.857 0.00 0.00 0.00 3.72
56 57 3.610040 TCATGCTCGGACTAAACACAT 57.390 42.857 0.00 0.00 0.00 3.21
57 58 3.937814 TCATGCTCGGACTAAACACATT 58.062 40.909 0.00 0.00 0.00 2.71
58 59 3.684305 TCATGCTCGGACTAAACACATTG 59.316 43.478 0.00 0.00 0.00 2.82
59 60 3.394674 TGCTCGGACTAAACACATTGA 57.605 42.857 0.00 0.00 0.00 2.57
60 61 3.734463 TGCTCGGACTAAACACATTGAA 58.266 40.909 0.00 0.00 0.00 2.69
61 62 4.323417 TGCTCGGACTAAACACATTGAAT 58.677 39.130 0.00 0.00 0.00 2.57
62 63 4.759693 TGCTCGGACTAAACACATTGAATT 59.240 37.500 0.00 0.00 0.00 2.17
63 64 5.088739 GCTCGGACTAAACACATTGAATTG 58.911 41.667 0.00 0.00 0.00 2.32
64 65 5.106712 GCTCGGACTAAACACATTGAATTGA 60.107 40.000 0.00 0.00 0.00 2.57
65 66 6.403636 GCTCGGACTAAACACATTGAATTGAT 60.404 38.462 0.00 0.00 0.00 2.57
66 67 7.447374 TCGGACTAAACACATTGAATTGATT 57.553 32.000 0.00 0.00 0.00 2.57
67 68 7.881142 TCGGACTAAACACATTGAATTGATTT 58.119 30.769 0.00 0.00 0.00 2.17
68 69 8.020819 TCGGACTAAACACATTGAATTGATTTC 58.979 33.333 0.00 0.00 34.72 2.17
69 70 7.273381 CGGACTAAACACATTGAATTGATTTCC 59.727 37.037 0.00 0.00 33.04 3.13
70 71 8.087750 GGACTAAACACATTGAATTGATTTCCA 58.912 33.333 0.00 0.00 33.04 3.53
71 72 9.643693 GACTAAACACATTGAATTGATTTCCAT 57.356 29.630 0.00 0.00 33.04 3.41
75 76 9.953697 AAACACATTGAATTGATTTCCATTTTG 57.046 25.926 0.00 0.00 33.04 2.44
76 77 8.680039 ACACATTGAATTGATTTCCATTTTGT 57.320 26.923 0.00 0.00 33.04 2.83
77 78 8.561212 ACACATTGAATTGATTTCCATTTTGTG 58.439 29.630 0.00 0.00 33.04 3.33
78 79 8.775527 CACATTGAATTGATTTCCATTTTGTGA 58.224 29.630 0.00 0.00 33.04 3.58
79 80 8.995220 ACATTGAATTGATTTCCATTTTGTGAG 58.005 29.630 0.00 0.00 33.04 3.51
80 81 9.210329 CATTGAATTGATTTCCATTTTGTGAGA 57.790 29.630 0.00 0.00 33.04 3.27
81 82 8.821147 TTGAATTGATTTCCATTTTGTGAGAG 57.179 30.769 0.00 0.00 33.04 3.20
82 83 8.180706 TGAATTGATTTCCATTTTGTGAGAGA 57.819 30.769 0.00 0.00 33.04 3.10
83 84 8.640651 TGAATTGATTTCCATTTTGTGAGAGAA 58.359 29.630 0.00 0.00 33.04 2.87
84 85 8.822652 AATTGATTTCCATTTTGTGAGAGAAC 57.177 30.769 0.00 0.00 0.00 3.01
85 86 6.000891 TGATTTCCATTTTGTGAGAGAACG 57.999 37.500 0.00 0.00 0.00 3.95
86 87 5.762711 TGATTTCCATTTTGTGAGAGAACGA 59.237 36.000 0.00 0.00 0.00 3.85
87 88 5.673337 TTTCCATTTTGTGAGAGAACGAG 57.327 39.130 0.00 0.00 0.00 4.18
88 89 4.336889 TCCATTTTGTGAGAGAACGAGT 57.663 40.909 0.00 0.00 0.00 4.18
89 90 5.462530 TCCATTTTGTGAGAGAACGAGTA 57.537 39.130 0.00 0.00 0.00 2.59
90 91 5.849510 TCCATTTTGTGAGAGAACGAGTAA 58.150 37.500 0.00 0.00 0.00 2.24
91 92 5.694910 TCCATTTTGTGAGAGAACGAGTAAC 59.305 40.000 0.00 0.00 0.00 2.50
92 93 5.696724 CCATTTTGTGAGAGAACGAGTAACT 59.303 40.000 0.00 0.00 0.00 2.24
93 94 6.346919 CCATTTTGTGAGAGAACGAGTAACTG 60.347 42.308 0.00 0.00 0.00 3.16
94 95 3.284323 TGTGAGAGAACGAGTAACTGC 57.716 47.619 0.00 0.00 0.00 4.40
95 96 2.885266 TGTGAGAGAACGAGTAACTGCT 59.115 45.455 0.00 0.00 0.00 4.24
96 97 3.318275 TGTGAGAGAACGAGTAACTGCTT 59.682 43.478 0.00 0.00 0.00 3.91
97 98 3.670991 GTGAGAGAACGAGTAACTGCTTG 59.329 47.826 0.00 0.00 0.00 4.01
98 99 3.318275 TGAGAGAACGAGTAACTGCTTGT 59.682 43.478 0.00 0.00 34.74 3.16
99 100 3.643763 AGAGAACGAGTAACTGCTTGTG 58.356 45.455 0.00 0.00 33.65 3.33
100 101 3.318275 AGAGAACGAGTAACTGCTTGTGA 59.682 43.478 0.00 0.00 33.65 3.58
101 102 4.049186 GAGAACGAGTAACTGCTTGTGAA 58.951 43.478 0.00 0.00 33.65 3.18
102 103 3.802685 AGAACGAGTAACTGCTTGTGAAC 59.197 43.478 0.00 0.00 33.65 3.18
103 104 3.454371 ACGAGTAACTGCTTGTGAACT 57.546 42.857 0.00 0.00 32.23 3.01
104 105 3.123804 ACGAGTAACTGCTTGTGAACTG 58.876 45.455 0.00 0.00 32.23 3.16
105 106 2.476619 CGAGTAACTGCTTGTGAACTGG 59.523 50.000 0.00 0.00 0.00 4.00
106 107 3.728845 GAGTAACTGCTTGTGAACTGGA 58.271 45.455 0.00 0.00 0.00 3.86
107 108 4.127171 GAGTAACTGCTTGTGAACTGGAA 58.873 43.478 0.00 0.00 0.00 3.53
108 109 4.130118 AGTAACTGCTTGTGAACTGGAAG 58.870 43.478 0.00 0.00 42.29 3.46
126 127 7.602517 CTGGAAGTCAGGTTTATTTCTACAG 57.397 40.000 0.00 0.00 39.76 2.74
127 128 7.311092 TGGAAGTCAGGTTTATTTCTACAGA 57.689 36.000 0.00 0.00 0.00 3.41
128 129 7.918076 TGGAAGTCAGGTTTATTTCTACAGAT 58.082 34.615 0.00 0.00 0.00 2.90
129 130 7.824289 TGGAAGTCAGGTTTATTTCTACAGATG 59.176 37.037 0.00 0.00 0.00 2.90
130 131 8.041323 GGAAGTCAGGTTTATTTCTACAGATGA 58.959 37.037 0.00 0.00 0.00 2.92
131 132 9.606631 GAAGTCAGGTTTATTTCTACAGATGAT 57.393 33.333 0.00 0.00 0.00 2.45
132 133 9.606631 AAGTCAGGTTTATTTCTACAGATGATC 57.393 33.333 0.00 0.00 0.00 2.92
133 134 8.762645 AGTCAGGTTTATTTCTACAGATGATCA 58.237 33.333 0.00 0.00 0.00 2.92
134 135 9.039870 GTCAGGTTTATTTCTACAGATGATCAG 57.960 37.037 0.09 0.00 0.00 2.90
135 136 8.762645 TCAGGTTTATTTCTACAGATGATCAGT 58.237 33.333 0.09 0.00 0.00 3.41
136 137 9.388506 CAGGTTTATTTCTACAGATGATCAGTT 57.611 33.333 0.09 0.00 0.00 3.16
140 141 8.803201 TTATTTCTACAGATGATCAGTTAGCG 57.197 34.615 0.09 0.00 0.00 4.26
141 142 4.837896 TCTACAGATGATCAGTTAGCGG 57.162 45.455 0.09 0.00 0.00 5.52
142 143 4.461198 TCTACAGATGATCAGTTAGCGGA 58.539 43.478 0.09 0.00 0.00 5.54
143 144 5.073428 TCTACAGATGATCAGTTAGCGGAT 58.927 41.667 0.09 0.00 32.33 4.18
144 145 3.987547 ACAGATGATCAGTTAGCGGATG 58.012 45.455 0.09 0.00 29.85 3.51
145 146 3.386078 ACAGATGATCAGTTAGCGGATGT 59.614 43.478 0.09 0.00 29.85 3.06
146 147 4.584743 ACAGATGATCAGTTAGCGGATGTA 59.415 41.667 0.09 0.00 29.85 2.29
147 148 5.244851 ACAGATGATCAGTTAGCGGATGTAT 59.755 40.000 0.09 0.00 29.85 2.29
148 149 6.162079 CAGATGATCAGTTAGCGGATGTATT 58.838 40.000 0.09 0.00 29.85 1.89
149 150 6.648310 CAGATGATCAGTTAGCGGATGTATTT 59.352 38.462 0.09 0.00 29.85 1.40
150 151 7.814587 CAGATGATCAGTTAGCGGATGTATTTA 59.185 37.037 0.09 0.00 29.85 1.40
151 152 7.815068 AGATGATCAGTTAGCGGATGTATTTAC 59.185 37.037 0.09 0.00 29.85 2.01
152 153 7.050970 TGATCAGTTAGCGGATGTATTTACT 57.949 36.000 0.00 0.00 29.85 2.24
153 154 8.173542 TGATCAGTTAGCGGATGTATTTACTA 57.826 34.615 0.00 0.00 29.85 1.82
154 155 8.635328 TGATCAGTTAGCGGATGTATTTACTAA 58.365 33.333 0.00 0.00 29.85 2.24
155 156 9.472361 GATCAGTTAGCGGATGTATTTACTAAA 57.528 33.333 0.00 0.00 29.85 1.85
156 157 8.638685 TCAGTTAGCGGATGTATTTACTAAAC 57.361 34.615 0.00 0.00 0.00 2.01
157 158 7.707893 TCAGTTAGCGGATGTATTTACTAAACC 59.292 37.037 0.00 0.00 0.00 3.27
158 159 6.988580 AGTTAGCGGATGTATTTACTAAACCC 59.011 38.462 0.00 0.00 0.00 4.11
159 160 4.374399 AGCGGATGTATTTACTAAACCCG 58.626 43.478 0.00 0.00 37.67 5.28
160 161 4.720530 CGGATGTATTTACTAAACCCGC 57.279 45.455 0.00 0.00 0.00 6.13
161 162 4.374399 CGGATGTATTTACTAAACCCGCT 58.626 43.478 0.00 0.00 0.00 5.52
162 163 5.531634 CGGATGTATTTACTAAACCCGCTA 58.468 41.667 0.00 0.00 0.00 4.26
163 164 5.403466 CGGATGTATTTACTAAACCCGCTAC 59.597 44.000 0.00 0.00 0.00 3.58
164 165 6.519382 GGATGTATTTACTAAACCCGCTACT 58.481 40.000 0.00 0.00 0.00 2.57
165 166 7.522073 CGGATGTATTTACTAAACCCGCTACTA 60.522 40.741 0.00 0.00 0.00 1.82
166 167 7.811713 GGATGTATTTACTAAACCCGCTACTAG 59.188 40.741 0.00 0.00 0.00 2.57
167 168 7.880160 TGTATTTACTAAACCCGCTACTAGA 57.120 36.000 0.00 0.00 0.00 2.43
168 169 7.707104 TGTATTTACTAAACCCGCTACTAGAC 58.293 38.462 0.00 0.00 0.00 2.59
169 170 6.780457 ATTTACTAAACCCGCTACTAGACA 57.220 37.500 0.00 0.00 0.00 3.41
170 171 5.824904 TTACTAAACCCGCTACTAGACAG 57.175 43.478 0.00 0.00 0.00 3.51
171 172 3.960571 ACTAAACCCGCTACTAGACAGA 58.039 45.455 0.00 0.00 0.00 3.41
172 173 4.534797 ACTAAACCCGCTACTAGACAGAT 58.465 43.478 0.00 0.00 0.00 2.90
173 174 3.802948 AAACCCGCTACTAGACAGATG 57.197 47.619 0.00 0.00 0.00 2.90
174 175 1.693627 ACCCGCTACTAGACAGATGG 58.306 55.000 0.00 0.38 0.00 3.51
175 176 1.063867 ACCCGCTACTAGACAGATGGT 60.064 52.381 0.00 0.99 0.00 3.55
176 177 2.174210 ACCCGCTACTAGACAGATGGTA 59.826 50.000 0.00 0.00 0.00 3.25
177 178 2.814919 CCCGCTACTAGACAGATGGTAG 59.185 54.545 0.00 0.00 35.93 3.18
178 179 3.496337 CCCGCTACTAGACAGATGGTAGA 60.496 52.174 0.00 0.00 35.13 2.59
179 180 3.499157 CCGCTACTAGACAGATGGTAGAC 59.501 52.174 0.00 0.00 35.13 2.59
180 181 3.499157 CGCTACTAGACAGATGGTAGACC 59.501 52.174 0.00 0.00 35.13 3.85
181 182 3.499157 GCTACTAGACAGATGGTAGACCG 59.501 52.174 0.00 0.00 39.43 4.79
182 183 3.648507 ACTAGACAGATGGTAGACCGT 57.351 47.619 0.00 0.00 39.43 4.83
183 184 3.965694 ACTAGACAGATGGTAGACCGTT 58.034 45.455 0.00 0.00 39.43 4.44
184 185 4.342359 ACTAGACAGATGGTAGACCGTTT 58.658 43.478 0.00 0.00 39.43 3.60
185 186 4.771054 ACTAGACAGATGGTAGACCGTTTT 59.229 41.667 0.00 0.00 39.43 2.43
186 187 5.948162 ACTAGACAGATGGTAGACCGTTTTA 59.052 40.000 0.00 0.00 39.43 1.52
187 188 5.326200 AGACAGATGGTAGACCGTTTTAG 57.674 43.478 0.00 0.00 39.43 1.85
188 189 5.014858 AGACAGATGGTAGACCGTTTTAGA 58.985 41.667 0.00 0.00 39.43 2.10
189 190 5.479375 AGACAGATGGTAGACCGTTTTAGAA 59.521 40.000 0.00 0.00 39.43 2.10
190 191 5.476614 ACAGATGGTAGACCGTTTTAGAAC 58.523 41.667 0.00 0.00 39.43 3.01
191 192 4.868734 CAGATGGTAGACCGTTTTAGAACC 59.131 45.833 0.00 0.00 39.43 3.62
192 193 4.529377 AGATGGTAGACCGTTTTAGAACCA 59.471 41.667 0.00 0.00 39.66 3.67
193 194 4.686191 TGGTAGACCGTTTTAGAACCAA 57.314 40.909 0.00 0.00 39.43 3.67
194 195 5.231702 TGGTAGACCGTTTTAGAACCAAT 57.768 39.130 0.00 0.00 39.43 3.16
195 196 5.240121 TGGTAGACCGTTTTAGAACCAATC 58.760 41.667 0.00 0.00 39.43 2.67
196 197 5.012354 TGGTAGACCGTTTTAGAACCAATCT 59.988 40.000 0.00 0.00 39.59 2.40
197 198 5.350640 GGTAGACCGTTTTAGAACCAATCTG 59.649 44.000 0.00 0.00 39.30 2.90
198 199 5.223449 AGACCGTTTTAGAACCAATCTGA 57.777 39.130 0.00 0.00 39.30 3.27
199 200 5.617252 AGACCGTTTTAGAACCAATCTGAA 58.383 37.500 0.00 0.00 39.30 3.02
200 201 6.238648 AGACCGTTTTAGAACCAATCTGAAT 58.761 36.000 0.00 0.00 39.30 2.57
201 202 6.371825 AGACCGTTTTAGAACCAATCTGAATC 59.628 38.462 0.00 0.00 39.30 2.52
202 203 6.238648 ACCGTTTTAGAACCAATCTGAATCT 58.761 36.000 0.00 0.00 39.30 2.40
203 204 6.715264 ACCGTTTTAGAACCAATCTGAATCTT 59.285 34.615 0.00 0.00 39.30 2.40
204 205 7.023575 CCGTTTTAGAACCAATCTGAATCTTG 58.976 38.462 0.00 0.00 39.30 3.02
205 206 7.308589 CCGTTTTAGAACCAATCTGAATCTTGT 60.309 37.037 0.00 0.00 39.30 3.16
206 207 8.717821 CGTTTTAGAACCAATCTGAATCTTGTA 58.282 33.333 0.00 0.00 39.30 2.41
209 210 9.739276 TTTAGAACCAATCTGAATCTTGTATGT 57.261 29.630 0.00 0.00 39.30 2.29
211 212 8.954950 AGAACCAATCTGAATCTTGTATGTAG 57.045 34.615 0.00 0.00 36.88 2.74
212 213 8.543774 AGAACCAATCTGAATCTTGTATGTAGT 58.456 33.333 0.00 0.00 36.88 2.73
213 214 9.167311 GAACCAATCTGAATCTTGTATGTAGTT 57.833 33.333 0.00 0.00 0.00 2.24
214 215 8.723942 ACCAATCTGAATCTTGTATGTAGTTC 57.276 34.615 0.00 0.00 0.00 3.01
215 216 8.321353 ACCAATCTGAATCTTGTATGTAGTTCA 58.679 33.333 0.00 0.00 0.00 3.18
216 217 8.824781 CCAATCTGAATCTTGTATGTAGTTCAG 58.175 37.037 6.59 6.59 42.22 3.02
220 221 9.591792 TCTGAATCTTGTATGTAGTTCAGATTG 57.408 33.333 10.54 0.00 43.68 2.67
221 222 9.591792 CTGAATCTTGTATGTAGTTCAGATTGA 57.408 33.333 7.02 0.00 43.04 2.57
222 223 9.591792 TGAATCTTGTATGTAGTTCAGATTGAG 57.408 33.333 0.00 0.00 0.00 3.02
223 224 8.954950 AATCTTGTATGTAGTTCAGATTGAGG 57.045 34.615 0.00 0.00 0.00 3.86
224 225 6.878317 TCTTGTATGTAGTTCAGATTGAGGG 58.122 40.000 0.00 0.00 0.00 4.30
225 226 5.614324 TGTATGTAGTTCAGATTGAGGGG 57.386 43.478 0.00 0.00 0.00 4.79
226 227 5.277250 TGTATGTAGTTCAGATTGAGGGGA 58.723 41.667 0.00 0.00 0.00 4.81
227 228 4.762289 ATGTAGTTCAGATTGAGGGGAC 57.238 45.455 0.00 0.00 0.00 4.46
228 229 3.516586 TGTAGTTCAGATTGAGGGGACA 58.483 45.455 0.00 0.00 0.00 4.02
229 230 4.104086 TGTAGTTCAGATTGAGGGGACAT 58.896 43.478 0.00 0.00 0.00 3.06
230 231 5.277250 TGTAGTTCAGATTGAGGGGACATA 58.723 41.667 0.00 0.00 0.00 2.29
231 232 5.905331 TGTAGTTCAGATTGAGGGGACATAT 59.095 40.000 0.00 0.00 0.00 1.78
232 233 7.073208 TGTAGTTCAGATTGAGGGGACATATA 58.927 38.462 0.00 0.00 0.00 0.86
233 234 7.567250 TGTAGTTCAGATTGAGGGGACATATAA 59.433 37.037 0.00 0.00 0.00 0.98
234 235 7.451731 AGTTCAGATTGAGGGGACATATAAA 57.548 36.000 0.00 0.00 0.00 1.40
235 236 7.512992 AGTTCAGATTGAGGGGACATATAAAG 58.487 38.462 0.00 0.00 0.00 1.85
236 237 7.127955 AGTTCAGATTGAGGGGACATATAAAGT 59.872 37.037 0.00 0.00 0.00 2.66
237 238 8.429641 GTTCAGATTGAGGGGACATATAAAGTA 58.570 37.037 0.00 0.00 0.00 2.24
238 239 8.195165 TCAGATTGAGGGGACATATAAAGTAG 57.805 38.462 0.00 0.00 0.00 2.57
239 240 7.235606 TCAGATTGAGGGGACATATAAAGTAGG 59.764 40.741 0.00 0.00 0.00 3.18
240 241 6.502158 AGATTGAGGGGACATATAAAGTAGGG 59.498 42.308 0.00 0.00 0.00 3.53
241 242 5.166013 TGAGGGGACATATAAAGTAGGGT 57.834 43.478 0.00 0.00 0.00 4.34
242 243 5.152934 TGAGGGGACATATAAAGTAGGGTC 58.847 45.833 0.00 0.00 0.00 4.46
243 244 5.102783 TGAGGGGACATATAAAGTAGGGTCT 60.103 44.000 0.00 0.00 0.00 3.85
244 245 6.105139 TGAGGGGACATATAAAGTAGGGTCTA 59.895 42.308 0.00 0.00 0.00 2.59
245 246 6.563163 AGGGGACATATAAAGTAGGGTCTAG 58.437 44.000 0.00 0.00 0.00 2.43
246 247 6.105890 AGGGGACATATAAAGTAGGGTCTAGT 59.894 42.308 0.00 0.00 0.00 2.57
247 248 7.299036 AGGGGACATATAAAGTAGGGTCTAGTA 59.701 40.741 0.00 0.00 0.00 1.82
248 249 8.121185 GGGGACATATAAAGTAGGGTCTAGTAT 58.879 40.741 0.00 0.00 0.00 2.12
258 259 8.480133 AAGTAGGGTCTAGTATATTGTCCTTG 57.520 38.462 0.00 0.00 0.00 3.61
259 260 7.593653 AGTAGGGTCTAGTATATTGTCCTTGT 58.406 38.462 0.00 0.00 0.00 3.16
260 261 8.730948 AGTAGGGTCTAGTATATTGTCCTTGTA 58.269 37.037 0.00 0.00 0.00 2.41
261 262 7.836479 AGGGTCTAGTATATTGTCCTTGTAC 57.164 40.000 0.00 0.00 0.00 2.90
262 263 7.359849 AGGGTCTAGTATATTGTCCTTGTACA 58.640 38.462 0.00 0.00 0.00 2.90
263 264 7.287235 AGGGTCTAGTATATTGTCCTTGTACAC 59.713 40.741 0.00 0.00 0.00 2.90
264 265 7.137426 GGTCTAGTATATTGTCCTTGTACACG 58.863 42.308 0.00 0.00 0.00 4.49
265 266 7.201767 GGTCTAGTATATTGTCCTTGTACACGT 60.202 40.741 0.00 0.00 0.00 4.49
266 267 8.830580 GTCTAGTATATTGTCCTTGTACACGTA 58.169 37.037 0.00 0.00 0.00 3.57
267 268 9.565090 TCTAGTATATTGTCCTTGTACACGTAT 57.435 33.333 0.00 0.00 0.00 3.06
270 271 9.309516 AGTATATTGTCCTTGTACACGTATTTG 57.690 33.333 0.00 0.00 0.00 2.32
271 272 9.090692 GTATATTGTCCTTGTACACGTATTTGT 57.909 33.333 0.00 0.00 0.00 2.83
273 274 9.826574 ATATTGTCCTTGTACACGTATTTGTAT 57.173 29.630 0.00 0.00 34.50 2.29
275 276 8.464770 TTGTCCTTGTACACGTATTTGTATAC 57.535 34.615 0.00 0.00 34.50 1.47
276 277 7.600960 TGTCCTTGTACACGTATTTGTATACA 58.399 34.615 0.08 0.08 37.12 2.29
277 278 8.252417 TGTCCTTGTACACGTATTTGTATACAT 58.748 33.333 6.36 0.00 37.12 2.29
278 279 9.734620 GTCCTTGTACACGTATTTGTATACATA 57.265 33.333 6.36 1.98 37.12 2.29
316 317 9.846248 TTGTGATCATCTATATATTGAGACGTG 57.154 33.333 0.00 0.00 0.00 4.49
317 318 9.231297 TGTGATCATCTATATATTGAGACGTGA 57.769 33.333 0.00 2.70 0.00 4.35
320 321 9.232082 GATCATCTATATATTGAGACGTGAAGC 57.768 37.037 0.00 0.00 0.00 3.86
321 322 8.341892 TCATCTATATATTGAGACGTGAAGCT 57.658 34.615 0.00 0.00 0.00 3.74
322 323 8.239998 TCATCTATATATTGAGACGTGAAGCTG 58.760 37.037 0.00 0.00 0.00 4.24
323 324 6.914259 TCTATATATTGAGACGTGAAGCTGG 58.086 40.000 0.00 0.00 0.00 4.85
324 325 5.791336 ATATATTGAGACGTGAAGCTGGA 57.209 39.130 0.00 0.00 0.00 3.86
325 326 4.679373 ATATTGAGACGTGAAGCTGGAT 57.321 40.909 0.00 0.00 0.00 3.41
326 327 2.084610 TTGAGACGTGAAGCTGGATG 57.915 50.000 0.00 0.00 0.00 3.51
327 328 0.969149 TGAGACGTGAAGCTGGATGT 59.031 50.000 0.00 0.00 0.00 3.06
328 329 1.067565 TGAGACGTGAAGCTGGATGTC 60.068 52.381 0.00 8.83 0.00 3.06
329 330 0.969149 AGACGTGAAGCTGGATGTCA 59.031 50.000 16.21 1.22 31.57 3.58
330 331 1.344438 AGACGTGAAGCTGGATGTCAA 59.656 47.619 16.21 0.00 31.57 3.18
331 332 1.461127 GACGTGAAGCTGGATGTCAAC 59.539 52.381 11.14 0.00 0.00 3.18
332 333 0.798776 CGTGAAGCTGGATGTCAACC 59.201 55.000 0.00 0.00 0.00 3.77
333 334 1.877680 CGTGAAGCTGGATGTCAACCA 60.878 52.381 1.38 1.38 35.96 3.67
334 335 2.440409 GTGAAGCTGGATGTCAACCAT 58.560 47.619 1.76 0.00 36.79 3.55
341 342 2.853159 GATGTCAACCATCCACGCA 58.147 52.632 0.00 0.00 43.59 5.24
342 343 1.164411 GATGTCAACCATCCACGCAA 58.836 50.000 0.00 0.00 43.59 4.85
343 344 1.539388 GATGTCAACCATCCACGCAAA 59.461 47.619 0.00 0.00 43.59 3.68
344 345 1.393603 TGTCAACCATCCACGCAAAA 58.606 45.000 0.00 0.00 0.00 2.44
345 346 1.066303 TGTCAACCATCCACGCAAAAC 59.934 47.619 0.00 0.00 0.00 2.43
346 347 0.671251 TCAACCATCCACGCAAAACC 59.329 50.000 0.00 0.00 0.00 3.27
347 348 0.319469 CAACCATCCACGCAAAACCC 60.319 55.000 0.00 0.00 0.00 4.11
348 349 0.469144 AACCATCCACGCAAAACCCT 60.469 50.000 0.00 0.00 0.00 4.34
349 350 0.402504 ACCATCCACGCAAAACCCTA 59.597 50.000 0.00 0.00 0.00 3.53
350 351 1.202952 ACCATCCACGCAAAACCCTAA 60.203 47.619 0.00 0.00 0.00 2.69
351 352 1.889829 CCATCCACGCAAAACCCTAAA 59.110 47.619 0.00 0.00 0.00 1.85
352 353 2.352323 CCATCCACGCAAAACCCTAAAC 60.352 50.000 0.00 0.00 0.00 2.01
353 354 1.320507 TCCACGCAAAACCCTAAACC 58.679 50.000 0.00 0.00 0.00 3.27
354 355 1.033574 CCACGCAAAACCCTAAACCA 58.966 50.000 0.00 0.00 0.00 3.67
355 356 1.616374 CCACGCAAAACCCTAAACCAT 59.384 47.619 0.00 0.00 0.00 3.55
356 357 2.609244 CCACGCAAAACCCTAAACCATG 60.609 50.000 0.00 0.00 0.00 3.66
357 358 2.035321 CACGCAAAACCCTAAACCATGT 59.965 45.455 0.00 0.00 0.00 3.21
358 359 2.035321 ACGCAAAACCCTAAACCATGTG 59.965 45.455 0.00 0.00 0.00 3.21
359 360 2.035321 CGCAAAACCCTAAACCATGTGT 59.965 45.455 0.00 0.00 0.00 3.72
360 361 3.491792 CGCAAAACCCTAAACCATGTGTT 60.492 43.478 0.00 0.00 39.43 3.32
362 363 4.509970 GCAAAACCCTAAACCATGTGTTTC 59.490 41.667 13.43 0.00 43.74 2.78
363 364 5.665459 CAAAACCCTAAACCATGTGTTTCA 58.335 37.500 13.43 3.65 43.74 2.69
364 365 5.941555 AAACCCTAAACCATGTGTTTCAA 57.058 34.783 13.43 0.78 43.74 2.69
365 366 4.929819 ACCCTAAACCATGTGTTTCAAC 57.070 40.909 13.43 0.00 43.74 3.18
366 367 4.542697 ACCCTAAACCATGTGTTTCAACT 58.457 39.130 13.43 0.00 43.74 3.16
367 368 5.697067 ACCCTAAACCATGTGTTTCAACTA 58.303 37.500 13.43 0.00 43.74 2.24
502 562 0.887933 GCCACCACGGTTTCAATGAT 59.112 50.000 0.00 0.00 36.97 2.45
518 578 0.897863 TGATTGGTCCCAAAAGCCCG 60.898 55.000 2.32 0.00 39.55 6.13
720 780 8.268605 TGTGATAGTAATAAGTGGCCAAACATA 58.731 33.333 7.24 0.00 0.00 2.29
797 857 6.072673 AGGTGGCACTAGTTAAAATCTTTTCG 60.073 38.462 18.45 0.00 0.00 3.46
809 869 3.660501 ATCTTTTCGAAAAGCCAACCC 57.339 42.857 35.22 0.00 43.85 4.11
815 875 3.446310 TCGAAAAGCCAACCCTTTTTC 57.554 42.857 1.95 0.08 43.12 2.29
853 914 3.967332 AAGGCAACCTTGAAATCATGG 57.033 42.857 12.41 12.41 42.96 3.66
870 932 2.425773 GCAAACGCGCTCACACAG 60.426 61.111 5.73 0.00 0.00 3.66
882 944 4.245660 CGCTCACACAGAATAGGAAAAGA 58.754 43.478 0.00 0.00 0.00 2.52
1028 1119 1.760086 CCGTGCTCCTCCTCCTCAT 60.760 63.158 0.00 0.00 0.00 2.90
1210 1304 1.528292 GCAGGTGACGTGACCTCTCT 61.528 60.000 24.80 0.00 45.15 3.10
1211 1305 0.962489 CAGGTGACGTGACCTCTCTT 59.038 55.000 24.80 0.00 45.15 2.85
1212 1306 1.068194 CAGGTGACGTGACCTCTCTTC 60.068 57.143 24.80 0.00 45.15 2.87
1213 1307 0.109689 GGTGACGTGACCTCTCTTCG 60.110 60.000 17.69 0.00 32.69 3.79
1214 1308 0.729816 GTGACGTGACCTCTCTTCGC 60.730 60.000 0.00 0.00 0.00 4.70
1215 1309 1.153997 GACGTGACCTCTCTTCGCC 60.154 63.158 0.00 0.00 0.00 5.54
1216 1310 1.587933 GACGTGACCTCTCTTCGCCT 61.588 60.000 0.00 0.00 0.00 5.52
1217 1311 1.153939 CGTGACCTCTCTTCGCCTG 60.154 63.158 0.00 0.00 0.00 4.85
1218 1312 1.446966 GTGACCTCTCTTCGCCTGC 60.447 63.158 0.00 0.00 0.00 4.85
1219 1313 2.185608 GACCTCTCTTCGCCTGCC 59.814 66.667 0.00 0.00 0.00 4.85
1220 1314 3.378399 GACCTCTCTTCGCCTGCCC 62.378 68.421 0.00 0.00 0.00 5.36
1221 1315 4.521062 CCTCTCTTCGCCTGCCCG 62.521 72.222 0.00 0.00 0.00 6.13
1222 1316 3.452786 CTCTCTTCGCCTGCCCGA 61.453 66.667 0.00 0.00 35.09 5.14
1223 1317 2.759973 TCTCTTCGCCTGCCCGAT 60.760 61.111 0.00 0.00 37.06 4.18
1224 1318 2.187946 CTCTTCGCCTGCCCGATT 59.812 61.111 0.00 0.00 37.06 3.34
1225 1319 1.450312 CTCTTCGCCTGCCCGATTT 60.450 57.895 0.00 0.00 37.06 2.17
1226 1320 1.432270 CTCTTCGCCTGCCCGATTTC 61.432 60.000 0.00 0.00 37.06 2.17
1227 1321 2.813179 CTTCGCCTGCCCGATTTCG 61.813 63.158 0.00 0.00 37.06 3.46
1228 1322 3.599285 TTCGCCTGCCCGATTTCGT 62.599 57.895 0.00 0.00 37.06 3.85
1285 1379 1.512156 GGCGACGCTTTGGGAAGAAA 61.512 55.000 20.77 0.00 34.71 2.52
1287 1381 1.663161 GCGACGCTTTGGGAAGAAAAG 60.663 52.381 13.73 0.00 37.63 2.27
1382 1477 5.645067 TCTTCCTGTGATTGTAAGCTGAATG 59.355 40.000 0.00 0.00 0.00 2.67
1456 1595 7.172190 CGAGCTGATCTATTGTATGGTGAATTT 59.828 37.037 0.00 0.00 0.00 1.82
1468 1607 9.461312 TTGTATGGTGAATTTATTTAGCTCTGT 57.539 29.630 0.00 0.00 0.00 3.41
1469 1608 9.461312 TGTATGGTGAATTTATTTAGCTCTGTT 57.539 29.630 0.00 0.00 0.00 3.16
1472 1611 7.526608 TGGTGAATTTATTTAGCTCTGTTTCG 58.473 34.615 0.00 0.00 0.00 3.46
1474 1613 7.692705 GGTGAATTTATTTAGCTCTGTTTCGTC 59.307 37.037 0.00 0.00 0.00 4.20
1476 1615 4.835199 TTATTTAGCTCTGTTTCGTCGC 57.165 40.909 0.00 0.00 0.00 5.19
1477 1616 1.425412 TTTAGCTCTGTTTCGTCGCC 58.575 50.000 0.00 0.00 0.00 5.54
1478 1617 0.389426 TTAGCTCTGTTTCGTCGCCC 60.389 55.000 0.00 0.00 0.00 6.13
1480 1619 2.383527 GCTCTGTTTCGTCGCCCAG 61.384 63.158 0.00 0.00 0.00 4.45
1481 1620 1.289066 CTCTGTTTCGTCGCCCAGA 59.711 57.895 7.70 7.70 33.22 3.86
1483 1622 0.105224 TCTGTTTCGTCGCCCAGAAA 59.895 50.000 6.04 0.00 34.40 2.52
1485 1624 1.535462 CTGTTTCGTCGCCCAGAAAAT 59.465 47.619 0.00 0.00 37.98 1.82
1486 1625 2.739913 CTGTTTCGTCGCCCAGAAAATA 59.260 45.455 0.00 0.00 37.98 1.40
1488 1627 2.740447 GTTTCGTCGCCCAGAAAATAGT 59.260 45.455 0.00 0.00 37.98 2.12
1491 1630 2.100252 TCGTCGCCCAGAAAATAGTAGG 59.900 50.000 0.00 0.00 0.00 3.18
1581 1728 6.153680 CCTAGTTGTCCTCAGATGTCTAGTTT 59.846 42.308 0.00 0.00 0.00 2.66
1608 1755 9.807649 GACAATTTGCTGGACATATCTTAATTT 57.192 29.630 0.00 0.00 0.00 1.82
1655 1802 8.870160 TTTGATACTGAGGTTCAATGTTTTTG 57.130 30.769 1.11 0.00 0.00 2.44
1656 1803 7.581213 TGATACTGAGGTTCAATGTTTTTGT 57.419 32.000 0.00 0.00 0.00 2.83
1657 1804 7.424803 TGATACTGAGGTTCAATGTTTTTGTG 58.575 34.615 0.00 0.00 0.00 3.33
1658 1805 5.659440 ACTGAGGTTCAATGTTTTTGTGT 57.341 34.783 0.00 0.00 0.00 3.72
1659 1806 5.410067 ACTGAGGTTCAATGTTTTTGTGTG 58.590 37.500 0.00 0.00 0.00 3.82
1688 1838 4.486090 AGTATTTGAGACTACTGTGCGTG 58.514 43.478 0.00 0.00 0.00 5.34
1767 1917 7.010552 GTCATACACAAGTACAGATGATGGAAC 59.989 40.741 0.00 0.00 31.96 3.62
1929 2079 5.566469 TGTCCCGGACAGATTTATTTCTTT 58.434 37.500 16.73 0.00 37.67 2.52
2040 2190 3.452627 ACCAGATCCTGTGTGTTATCCTC 59.547 47.826 0.00 0.00 0.00 3.71
2044 2194 1.555075 TCCTGTGTGTTATCCTCCAGC 59.445 52.381 0.00 0.00 0.00 4.85
2049 2199 3.003480 GTGTGTTATCCTCCAGCACTTC 58.997 50.000 0.00 0.00 0.00 3.01
2083 2233 6.939730 TCATTCATAGCTTTGGTGTTAGACAA 59.060 34.615 4.23 0.00 0.00 3.18
2110 2261 6.554334 TTTGCTACTACAAGTTCATCAACC 57.446 37.500 0.00 0.00 32.22 3.77
2189 2340 4.603131 AGCACATGAGAATTACATGGGTT 58.397 39.130 20.79 15.56 46.81 4.11
2198 2349 7.047891 TGAGAATTACATGGGTTACAGATGAC 58.952 38.462 0.00 0.00 0.00 3.06
2288 2439 1.202582 AGCACGTCCTACAGCTACTTG 59.797 52.381 0.00 0.00 35.19 3.16
2402 2553 2.107726 GTTCCAACTTAAGACACCCCCT 59.892 50.000 10.09 0.00 0.00 4.79
2441 2592 2.979130 GGCTGTTGTAGGCGATCTC 58.021 57.895 0.00 0.00 42.55 2.75
2525 2676 2.820728 TACTTCCCGGTGATCTCTCA 57.179 50.000 0.00 0.00 0.00 3.27
2702 2853 2.698855 TGCCTTATGAAGAGAGTGGC 57.301 50.000 0.00 0.00 39.33 5.01
2825 2976 4.202388 TGGCTTAAGGTTCGTAACTTCCTT 60.202 41.667 4.29 0.00 42.10 3.36
2848 2999 3.004002 ACTCCATGTCATATTGCATTGCG 59.996 43.478 3.84 0.00 0.00 4.85
2946 3099 2.479901 GCTAGAAAGGTAGAGTGACCGC 60.480 54.545 0.00 0.00 44.88 5.68
2981 3139 6.309737 CACCTACACTCGGAACTTATGTTAAC 59.690 42.308 0.00 0.00 36.39 2.01
2982 3140 5.809051 CCTACACTCGGAACTTATGTTAACC 59.191 44.000 2.48 0.00 36.39 2.85
3011 3193 5.349270 TGTCGGTGTATTCTTCCATTTTACG 59.651 40.000 0.00 0.00 0.00 3.18
3046 3228 9.840427 GATGTGCTTAGCTTAAAAGTTAAATCA 57.160 29.630 5.60 0.79 32.50 2.57
3047 3229 9.626045 ATGTGCTTAGCTTAAAAGTTAAATCAC 57.374 29.630 5.60 15.98 36.70 3.06
3205 3387 4.323485 GGGTGAAGGTGACAGTATGATGAA 60.323 45.833 0.00 0.00 39.69 2.57
3206 3388 4.631813 GGTGAAGGTGACAGTATGATGAAC 59.368 45.833 0.00 0.00 39.69 3.18
3252 3434 5.050769 GCCGCTCATGTGGATATTATAATCG 60.051 44.000 0.00 0.00 46.34 3.34
3308 3490 3.110705 ACTCCTTGCAGATCACCAGTAT 58.889 45.455 0.00 0.00 0.00 2.12
3310 3492 2.101415 TCCTTGCAGATCACCAGTATCG 59.899 50.000 0.00 0.00 0.00 2.92
3313 3495 1.202452 TGCAGATCACCAGTATCGCAG 60.202 52.381 0.00 0.00 32.83 5.18
3329 3511 2.098934 TCGCAGCACTGTTCAAATTTGT 59.901 40.909 17.47 0.00 0.00 2.83
3354 3536 7.232118 GCCTCTGGCCATGTAATTTATTTAT 57.768 36.000 5.51 0.00 44.06 1.40
3416 3598 2.779506 GAGTCTACAAAGGTGGGGTTG 58.220 52.381 0.00 0.00 0.00 3.77
3427 3609 1.000233 TGGGGTTGATCCATGTGGC 60.000 57.895 0.00 0.00 38.11 5.01
3442 3624 1.930503 TGTGGCGCTGTTCATATAACG 59.069 47.619 7.64 0.00 0.00 3.18
3497 3682 0.698818 CAGGTACCTTTGCCCTCCTT 59.301 55.000 13.15 0.00 0.00 3.36
3526 3711 1.677576 TGCATCTGAATCCAAATCGCC 59.322 47.619 0.00 0.00 0.00 5.54
3549 3734 6.742644 GCCTTAGTGCCACTAGATTGATATGT 60.743 42.308 4.51 0.00 31.47 2.29
3559 3744 8.811017 CCACTAGATTGATATGTCTATCTTGGT 58.189 37.037 18.41 14.88 41.94 3.67
3590 3775 3.775866 TCAGGTACCATAATCCGAAACCA 59.224 43.478 15.94 0.00 0.00 3.67
3641 3826 0.674895 GGCACGGTGAGCTGAAGATT 60.675 55.000 13.29 0.00 0.00 2.40
3656 3841 2.479566 AGATTGTCAACTCCACGCAT 57.520 45.000 0.00 0.00 0.00 4.73
3695 3880 1.209640 GAACGACGACGAAGAGCCT 59.790 57.895 15.32 0.00 42.66 4.58
3710 3895 3.106054 AGAGCCTGTGAGAACAGATGAT 58.894 45.455 7.43 0.00 39.99 2.45
3859 4046 5.692204 GCTTGCCATGTAGTAGTACTGTATG 59.308 44.000 13.29 15.01 0.00 2.39
3947 4134 5.124936 GGGTTAACCAATGAGAACATGTACC 59.875 44.000 25.71 0.00 39.85 3.34
3949 4136 4.657814 AACCAATGAGAACATGTACCCT 57.342 40.909 0.00 0.00 36.79 4.34
3950 4137 3.955471 ACCAATGAGAACATGTACCCTG 58.045 45.455 0.00 0.00 36.79 4.45
3997 4185 4.316205 TCAGTATGATACGAAATGGCGT 57.684 40.909 0.00 0.00 42.56 5.68
3998 4186 4.295870 TCAGTATGATACGAAATGGCGTC 58.704 43.478 0.00 0.00 42.56 5.19
3999 4187 4.048504 CAGTATGATACGAAATGGCGTCA 58.951 43.478 0.00 0.00 41.01 4.35
4000 4188 4.506288 CAGTATGATACGAAATGGCGTCAA 59.494 41.667 0.00 0.00 41.01 3.18
4001 4189 5.006261 CAGTATGATACGAAATGGCGTCAAA 59.994 40.000 0.00 0.00 41.01 2.69
4002 4190 3.733024 TGATACGAAATGGCGTCAAAC 57.267 42.857 0.00 0.00 44.39 2.93
4003 4191 2.417239 TGATACGAAATGGCGTCAAACC 59.583 45.455 0.00 0.00 44.39 3.27
4004 4192 1.880271 TACGAAATGGCGTCAAACCA 58.120 45.000 0.00 0.00 44.39 3.67
4005 4193 0.309612 ACGAAATGGCGTCAAACCAC 59.690 50.000 0.00 0.00 41.22 4.16
4006 4194 0.309302 CGAAATGGCGTCAAACCACA 59.691 50.000 0.00 0.00 40.82 4.17
4007 4195 1.766069 GAAATGGCGTCAAACCACAC 58.234 50.000 0.00 0.00 40.82 3.82
4008 4196 0.030101 AAATGGCGTCAAACCACACG 59.970 50.000 0.00 0.00 40.82 4.49
4012 4200 3.712655 CGTCAAACCACACGCAGA 58.287 55.556 0.00 0.00 0.00 4.26
4013 4201 2.234613 CGTCAAACCACACGCAGAT 58.765 52.632 0.00 0.00 0.00 2.90
4014 4202 0.110688 CGTCAAACCACACGCAGATG 60.111 55.000 0.00 0.00 0.00 2.90
4015 4203 0.944386 GTCAAACCACACGCAGATGT 59.056 50.000 0.00 0.00 0.00 3.06
4016 4204 1.069906 GTCAAACCACACGCAGATGTC 60.070 52.381 0.00 0.00 0.00 3.06
4017 4205 0.943673 CAAACCACACGCAGATGTCA 59.056 50.000 0.00 0.00 0.00 3.58
4018 4206 1.536766 CAAACCACACGCAGATGTCAT 59.463 47.619 0.00 0.00 0.00 3.06
4019 4207 2.741517 CAAACCACACGCAGATGTCATA 59.258 45.455 0.00 0.00 0.00 2.15
4020 4208 2.299993 ACCACACGCAGATGTCATAG 57.700 50.000 0.00 0.00 0.00 2.23
4027 4215 1.001924 CGCAGATGTCATAGTCGCTCT 60.002 52.381 0.00 0.00 0.00 4.09
4067 4255 3.030652 CGAAAAACACAGCCCGCT 58.969 55.556 0.00 0.00 0.00 5.52
4347 4540 1.091771 CGCATCCTTGTGAGCGGATT 61.092 55.000 0.00 0.00 45.83 3.01
4424 4632 2.364448 GAAGGAGGAGGAGGGCGT 60.364 66.667 0.00 0.00 0.00 5.68
4425 4633 2.364448 AAGGAGGAGGAGGGCGTC 60.364 66.667 0.00 0.00 0.00 5.19
4565 4838 3.379445 GGAGGGCGACGAGTGGAA 61.379 66.667 0.00 0.00 0.00 3.53
4649 4922 1.960040 CTCCAGCCGTGGTAGATGCA 61.960 60.000 0.00 0.00 45.28 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.517453 GCCATCAGGTAAGTTGTTGTAACA 59.483 41.667 0.00 0.00 37.19 2.41
3 4 3.007074 TCGCCATCAGGTAAGTTGTTGTA 59.993 43.478 0.00 0.00 37.19 2.41
4 5 2.151202 CGCCATCAGGTAAGTTGTTGT 58.849 47.619 0.00 0.00 37.19 3.32
5 6 2.422597 TCGCCATCAGGTAAGTTGTTG 58.577 47.619 0.00 0.00 37.19 3.33
6 7 2.851263 TCGCCATCAGGTAAGTTGTT 57.149 45.000 0.00 0.00 37.19 2.83
7 8 2.851263 TTCGCCATCAGGTAAGTTGT 57.149 45.000 0.00 0.00 37.19 3.32
8 9 2.614057 GGATTCGCCATCAGGTAAGTTG 59.386 50.000 0.00 0.00 37.19 3.16
9 10 2.238646 TGGATTCGCCATCAGGTAAGTT 59.761 45.455 0.00 0.00 43.33 2.66
10 11 1.837439 TGGATTCGCCATCAGGTAAGT 59.163 47.619 0.00 0.00 43.33 2.24
11 12 2.620251 TGGATTCGCCATCAGGTAAG 57.380 50.000 0.00 0.00 43.33 2.34
20 21 1.811965 CATGAAACACTGGATTCGCCA 59.188 47.619 0.00 0.00 46.96 5.69
21 22 1.468054 GCATGAAACACTGGATTCGCC 60.468 52.381 0.00 0.00 37.10 5.54
22 23 1.470098 AGCATGAAACACTGGATTCGC 59.530 47.619 0.00 0.00 0.00 4.70
23 24 2.222886 CGAGCATGAAACACTGGATTCG 60.223 50.000 0.00 0.00 0.00 3.34
24 25 2.096496 CCGAGCATGAAACACTGGATTC 59.904 50.000 0.00 0.00 0.00 2.52
25 26 2.086869 CCGAGCATGAAACACTGGATT 58.913 47.619 0.00 0.00 0.00 3.01
26 27 1.278985 TCCGAGCATGAAACACTGGAT 59.721 47.619 0.00 0.00 0.00 3.41
27 28 0.684535 TCCGAGCATGAAACACTGGA 59.315 50.000 0.00 0.00 0.00 3.86
28 29 0.798776 GTCCGAGCATGAAACACTGG 59.201 55.000 0.00 0.00 0.00 4.00
29 30 1.800805 AGTCCGAGCATGAAACACTG 58.199 50.000 0.00 0.00 0.00 3.66
30 31 3.678056 TTAGTCCGAGCATGAAACACT 57.322 42.857 0.00 0.00 0.00 3.55
31 32 3.496884 TGTTTAGTCCGAGCATGAAACAC 59.503 43.478 0.00 0.00 33.21 3.32
32 33 3.496884 GTGTTTAGTCCGAGCATGAAACA 59.503 43.478 0.00 0.00 35.15 2.83
33 34 3.496884 TGTGTTTAGTCCGAGCATGAAAC 59.503 43.478 0.00 0.00 0.00 2.78
34 35 3.734463 TGTGTTTAGTCCGAGCATGAAA 58.266 40.909 0.00 0.00 0.00 2.69
35 36 3.394674 TGTGTTTAGTCCGAGCATGAA 57.605 42.857 0.00 0.00 0.00 2.57
36 37 3.610040 ATGTGTTTAGTCCGAGCATGA 57.390 42.857 0.00 0.00 0.00 3.07
37 38 3.684305 TCAATGTGTTTAGTCCGAGCATG 59.316 43.478 0.00 0.00 0.00 4.06
38 39 3.937814 TCAATGTGTTTAGTCCGAGCAT 58.062 40.909 0.00 0.00 0.00 3.79
39 40 3.394674 TCAATGTGTTTAGTCCGAGCA 57.605 42.857 0.00 0.00 0.00 4.26
40 41 4.946784 ATTCAATGTGTTTAGTCCGAGC 57.053 40.909 0.00 0.00 0.00 5.03
41 42 6.480524 TCAATTCAATGTGTTTAGTCCGAG 57.519 37.500 0.00 0.00 0.00 4.63
42 43 7.447374 AATCAATTCAATGTGTTTAGTCCGA 57.553 32.000 0.00 0.00 0.00 4.55
43 44 7.273381 GGAAATCAATTCAATGTGTTTAGTCCG 59.727 37.037 0.00 0.00 39.98 4.79
44 45 8.087750 TGGAAATCAATTCAATGTGTTTAGTCC 58.912 33.333 0.00 0.00 39.98 3.85
45 46 9.643693 ATGGAAATCAATTCAATGTGTTTAGTC 57.356 29.630 0.00 0.00 39.98 2.59
49 50 9.953697 CAAAATGGAAATCAATTCAATGTGTTT 57.046 25.926 0.00 0.00 39.98 2.83
50 51 9.122779 ACAAAATGGAAATCAATTCAATGTGTT 57.877 25.926 0.00 0.00 39.98 3.32
51 52 8.561212 CACAAAATGGAAATCAATTCAATGTGT 58.439 29.630 11.85 0.00 39.98 3.72
52 53 8.775527 TCACAAAATGGAAATCAATTCAATGTG 58.224 29.630 12.95 12.95 39.98 3.21
53 54 8.905660 TCACAAAATGGAAATCAATTCAATGT 57.094 26.923 0.00 0.00 39.98 2.71
54 55 9.210329 TCTCACAAAATGGAAATCAATTCAATG 57.790 29.630 0.00 0.00 39.98 2.82
55 56 9.431887 CTCTCACAAAATGGAAATCAATTCAAT 57.568 29.630 0.00 0.00 39.98 2.57
56 57 8.640651 TCTCTCACAAAATGGAAATCAATTCAA 58.359 29.630 0.00 0.00 39.98 2.69
57 58 8.180706 TCTCTCACAAAATGGAAATCAATTCA 57.819 30.769 0.00 0.00 39.98 2.57
58 59 8.919661 GTTCTCTCACAAAATGGAAATCAATTC 58.080 33.333 0.00 0.00 37.31 2.17
59 60 7.596248 CGTTCTCTCACAAAATGGAAATCAATT 59.404 33.333 0.00 0.00 0.00 2.32
60 61 7.040478 TCGTTCTCTCACAAAATGGAAATCAAT 60.040 33.333 0.00 0.00 0.00 2.57
61 62 6.262049 TCGTTCTCTCACAAAATGGAAATCAA 59.738 34.615 0.00 0.00 0.00 2.57
62 63 5.762711 TCGTTCTCTCACAAAATGGAAATCA 59.237 36.000 0.00 0.00 0.00 2.57
63 64 6.073003 ACTCGTTCTCTCACAAAATGGAAATC 60.073 38.462 0.00 0.00 0.00 2.17
64 65 5.765182 ACTCGTTCTCTCACAAAATGGAAAT 59.235 36.000 0.00 0.00 0.00 2.17
65 66 5.123227 ACTCGTTCTCTCACAAAATGGAAA 58.877 37.500 0.00 0.00 0.00 3.13
66 67 4.703897 ACTCGTTCTCTCACAAAATGGAA 58.296 39.130 0.00 0.00 0.00 3.53
67 68 4.336889 ACTCGTTCTCTCACAAAATGGA 57.663 40.909 0.00 0.00 0.00 3.41
68 69 5.696724 AGTTACTCGTTCTCTCACAAAATGG 59.303 40.000 0.00 0.00 0.00 3.16
69 70 6.584954 CAGTTACTCGTTCTCTCACAAAATG 58.415 40.000 0.00 0.00 0.00 2.32
70 71 5.177696 GCAGTTACTCGTTCTCTCACAAAAT 59.822 40.000 0.00 0.00 0.00 1.82
71 72 4.506654 GCAGTTACTCGTTCTCTCACAAAA 59.493 41.667 0.00 0.00 0.00 2.44
72 73 4.049186 GCAGTTACTCGTTCTCTCACAAA 58.951 43.478 0.00 0.00 0.00 2.83
73 74 3.318275 AGCAGTTACTCGTTCTCTCACAA 59.682 43.478 0.00 0.00 0.00 3.33
74 75 2.885266 AGCAGTTACTCGTTCTCTCACA 59.115 45.455 0.00 0.00 0.00 3.58
75 76 3.562567 AGCAGTTACTCGTTCTCTCAC 57.437 47.619 0.00 0.00 0.00 3.51
76 77 3.318275 ACAAGCAGTTACTCGTTCTCTCA 59.682 43.478 0.00 0.00 0.00 3.27
77 78 3.670991 CACAAGCAGTTACTCGTTCTCTC 59.329 47.826 0.00 0.00 0.00 3.20
78 79 3.318275 TCACAAGCAGTTACTCGTTCTCT 59.682 43.478 0.00 0.00 0.00 3.10
79 80 3.639538 TCACAAGCAGTTACTCGTTCTC 58.360 45.455 0.00 0.00 0.00 2.87
80 81 3.728076 TCACAAGCAGTTACTCGTTCT 57.272 42.857 0.00 0.00 0.00 3.01
81 82 3.802685 AGTTCACAAGCAGTTACTCGTTC 59.197 43.478 0.00 0.00 0.00 3.95
82 83 3.555956 CAGTTCACAAGCAGTTACTCGTT 59.444 43.478 0.00 0.00 0.00 3.85
83 84 3.123804 CAGTTCACAAGCAGTTACTCGT 58.876 45.455 0.00 0.00 0.00 4.18
84 85 2.476619 CCAGTTCACAAGCAGTTACTCG 59.523 50.000 0.00 0.00 0.00 4.18
85 86 3.728845 TCCAGTTCACAAGCAGTTACTC 58.271 45.455 0.00 0.00 0.00 2.59
86 87 3.838244 TCCAGTTCACAAGCAGTTACT 57.162 42.857 0.00 0.00 0.00 2.24
87 88 3.877508 ACTTCCAGTTCACAAGCAGTTAC 59.122 43.478 0.00 0.00 0.00 2.50
88 89 4.127171 GACTTCCAGTTCACAAGCAGTTA 58.873 43.478 0.00 0.00 0.00 2.24
89 90 2.945668 GACTTCCAGTTCACAAGCAGTT 59.054 45.455 0.00 0.00 0.00 3.16
90 91 2.092968 TGACTTCCAGTTCACAAGCAGT 60.093 45.455 0.00 0.00 0.00 4.40
91 92 2.547211 CTGACTTCCAGTTCACAAGCAG 59.453 50.000 0.00 0.00 38.10 4.24
92 93 2.564771 CTGACTTCCAGTTCACAAGCA 58.435 47.619 0.00 0.00 38.10 3.91
93 94 1.876156 CCTGACTTCCAGTTCACAAGC 59.124 52.381 0.00 0.00 41.33 4.01
94 95 3.199880 ACCTGACTTCCAGTTCACAAG 57.800 47.619 0.00 0.00 41.33 3.16
95 96 3.644966 AACCTGACTTCCAGTTCACAA 57.355 42.857 0.00 0.00 41.33 3.33
96 97 3.644966 AAACCTGACTTCCAGTTCACA 57.355 42.857 0.00 0.00 41.33 3.58
97 98 6.486993 AGAAATAAACCTGACTTCCAGTTCAC 59.513 38.462 0.00 0.00 41.33 3.18
98 99 6.601332 AGAAATAAACCTGACTTCCAGTTCA 58.399 36.000 0.00 0.00 41.33 3.18
99 100 7.660208 TGTAGAAATAAACCTGACTTCCAGTTC 59.340 37.037 0.00 0.00 41.33 3.01
100 101 7.514721 TGTAGAAATAAACCTGACTTCCAGTT 58.485 34.615 0.00 0.00 41.33 3.16
101 102 7.016268 TCTGTAGAAATAAACCTGACTTCCAGT 59.984 37.037 0.00 0.00 41.33 4.00
102 103 7.386851 TCTGTAGAAATAAACCTGACTTCCAG 58.613 38.462 0.00 0.00 42.55 3.86
103 104 7.311092 TCTGTAGAAATAAACCTGACTTCCA 57.689 36.000 0.00 0.00 0.00 3.53
104 105 8.041323 TCATCTGTAGAAATAAACCTGACTTCC 58.959 37.037 0.00 0.00 0.00 3.46
105 106 9.606631 ATCATCTGTAGAAATAAACCTGACTTC 57.393 33.333 0.00 0.00 0.00 3.01
106 107 9.606631 GATCATCTGTAGAAATAAACCTGACTT 57.393 33.333 0.00 0.00 0.00 3.01
107 108 8.762645 TGATCATCTGTAGAAATAAACCTGACT 58.237 33.333 0.00 0.00 0.00 3.41
108 109 8.948631 TGATCATCTGTAGAAATAAACCTGAC 57.051 34.615 0.00 0.00 0.00 3.51
109 110 8.762645 ACTGATCATCTGTAGAAATAAACCTGA 58.237 33.333 0.00 0.00 0.00 3.86
110 111 8.954950 ACTGATCATCTGTAGAAATAAACCTG 57.045 34.615 0.00 0.00 0.00 4.00
114 115 9.249457 CGCTAACTGATCATCTGTAGAAATAAA 57.751 33.333 0.00 0.00 0.00 1.40
115 116 7.867909 CCGCTAACTGATCATCTGTAGAAATAA 59.132 37.037 0.00 0.00 0.00 1.40
116 117 7.230712 TCCGCTAACTGATCATCTGTAGAAATA 59.769 37.037 0.00 0.00 0.00 1.40
117 118 6.040955 TCCGCTAACTGATCATCTGTAGAAAT 59.959 38.462 0.00 0.00 0.00 2.17
118 119 5.359860 TCCGCTAACTGATCATCTGTAGAAA 59.640 40.000 0.00 0.00 0.00 2.52
119 120 4.887655 TCCGCTAACTGATCATCTGTAGAA 59.112 41.667 0.00 0.00 0.00 2.10
120 121 4.461198 TCCGCTAACTGATCATCTGTAGA 58.539 43.478 0.00 0.00 0.00 2.59
121 122 4.837896 TCCGCTAACTGATCATCTGTAG 57.162 45.455 0.00 0.00 0.00 2.74
122 123 4.584743 ACATCCGCTAACTGATCATCTGTA 59.415 41.667 0.00 0.00 0.00 2.74
123 124 3.386078 ACATCCGCTAACTGATCATCTGT 59.614 43.478 0.00 0.00 0.00 3.41
124 125 3.987547 ACATCCGCTAACTGATCATCTG 58.012 45.455 0.00 0.00 0.00 2.90
125 126 5.991933 ATACATCCGCTAACTGATCATCT 57.008 39.130 0.00 0.00 0.00 2.90
126 127 7.815068 AGTAAATACATCCGCTAACTGATCATC 59.185 37.037 0.00 0.00 0.00 2.92
127 128 7.671302 AGTAAATACATCCGCTAACTGATCAT 58.329 34.615 0.00 0.00 0.00 2.45
128 129 7.050970 AGTAAATACATCCGCTAACTGATCA 57.949 36.000 0.00 0.00 0.00 2.92
129 130 9.472361 TTTAGTAAATACATCCGCTAACTGATC 57.528 33.333 0.00 0.00 0.00 2.92
130 131 9.257651 GTTTAGTAAATACATCCGCTAACTGAT 57.742 33.333 0.00 0.00 0.00 2.90
131 132 7.707893 GGTTTAGTAAATACATCCGCTAACTGA 59.292 37.037 0.00 0.00 0.00 3.41
132 133 7.042254 GGGTTTAGTAAATACATCCGCTAACTG 60.042 40.741 0.00 0.00 0.00 3.16
133 134 6.988580 GGGTTTAGTAAATACATCCGCTAACT 59.011 38.462 0.00 0.00 0.00 2.24
134 135 6.074142 CGGGTTTAGTAAATACATCCGCTAAC 60.074 42.308 0.00 0.00 0.00 2.34
135 136 5.984926 CGGGTTTAGTAAATACATCCGCTAA 59.015 40.000 0.00 0.00 0.00 3.09
136 137 5.531634 CGGGTTTAGTAAATACATCCGCTA 58.468 41.667 0.00 0.00 0.00 4.26
137 138 4.374399 CGGGTTTAGTAAATACATCCGCT 58.626 43.478 0.00 0.00 0.00 5.52
138 139 4.720530 CGGGTTTAGTAAATACATCCGC 57.279 45.455 0.00 0.00 0.00 5.54
139 140 4.374399 AGCGGGTTTAGTAAATACATCCG 58.626 43.478 0.00 8.67 38.17 4.18
140 141 6.519382 AGTAGCGGGTTTAGTAAATACATCC 58.481 40.000 0.00 0.00 0.00 3.51
141 142 8.571336 TCTAGTAGCGGGTTTAGTAAATACATC 58.429 37.037 0.00 0.00 0.00 3.06
142 143 8.355913 GTCTAGTAGCGGGTTTAGTAAATACAT 58.644 37.037 0.00 0.00 0.00 2.29
143 144 7.339212 TGTCTAGTAGCGGGTTTAGTAAATACA 59.661 37.037 0.00 0.00 0.00 2.29
144 145 7.707104 TGTCTAGTAGCGGGTTTAGTAAATAC 58.293 38.462 0.00 0.00 0.00 1.89
145 146 7.775093 TCTGTCTAGTAGCGGGTTTAGTAAATA 59.225 37.037 0.00 0.00 0.00 1.40
146 147 6.604795 TCTGTCTAGTAGCGGGTTTAGTAAAT 59.395 38.462 0.00 0.00 0.00 1.40
147 148 5.945784 TCTGTCTAGTAGCGGGTTTAGTAAA 59.054 40.000 0.00 0.00 0.00 2.01
148 149 5.500234 TCTGTCTAGTAGCGGGTTTAGTAA 58.500 41.667 0.00 0.00 0.00 2.24
149 150 5.102953 TCTGTCTAGTAGCGGGTTTAGTA 57.897 43.478 0.00 0.00 0.00 1.82
150 151 3.960571 TCTGTCTAGTAGCGGGTTTAGT 58.039 45.455 0.00 0.00 0.00 2.24
151 152 4.261656 CCATCTGTCTAGTAGCGGGTTTAG 60.262 50.000 0.00 0.00 0.00 1.85
152 153 3.635373 CCATCTGTCTAGTAGCGGGTTTA 59.365 47.826 0.00 0.00 0.00 2.01
153 154 2.431057 CCATCTGTCTAGTAGCGGGTTT 59.569 50.000 0.00 0.00 0.00 3.27
154 155 2.032620 CCATCTGTCTAGTAGCGGGTT 58.967 52.381 0.00 0.00 0.00 4.11
155 156 1.063867 ACCATCTGTCTAGTAGCGGGT 60.064 52.381 0.00 0.00 0.00 5.28
156 157 1.693627 ACCATCTGTCTAGTAGCGGG 58.306 55.000 0.00 0.00 0.00 6.13
157 158 3.499157 GTCTACCATCTGTCTAGTAGCGG 59.501 52.174 0.00 0.00 33.70 5.52
158 159 3.499157 GGTCTACCATCTGTCTAGTAGCG 59.501 52.174 0.00 0.00 33.70 4.26
159 160 3.499157 CGGTCTACCATCTGTCTAGTAGC 59.501 52.174 0.00 0.00 33.70 3.58
160 161 4.706035 ACGGTCTACCATCTGTCTAGTAG 58.294 47.826 0.00 0.00 35.14 2.57
161 162 4.767578 ACGGTCTACCATCTGTCTAGTA 57.232 45.455 0.00 0.00 35.14 1.82
162 163 3.648507 ACGGTCTACCATCTGTCTAGT 57.351 47.619 0.00 0.00 35.14 2.57
163 164 4.985538 AAACGGTCTACCATCTGTCTAG 57.014 45.455 0.00 0.00 35.14 2.43
164 165 6.182627 TCTAAAACGGTCTACCATCTGTCTA 58.817 40.000 0.00 0.00 35.14 2.59
165 166 5.014858 TCTAAAACGGTCTACCATCTGTCT 58.985 41.667 0.00 0.00 35.14 3.41
166 167 5.320549 TCTAAAACGGTCTACCATCTGTC 57.679 43.478 0.00 0.00 35.14 3.51
167 168 5.476614 GTTCTAAAACGGTCTACCATCTGT 58.523 41.667 0.00 0.00 35.14 3.41
168 169 4.868734 GGTTCTAAAACGGTCTACCATCTG 59.131 45.833 0.00 0.00 36.16 2.90
169 170 4.529377 TGGTTCTAAAACGGTCTACCATCT 59.471 41.667 0.00 0.00 36.16 2.90
170 171 4.824289 TGGTTCTAAAACGGTCTACCATC 58.176 43.478 0.00 0.00 36.16 3.51
171 172 4.895668 TGGTTCTAAAACGGTCTACCAT 57.104 40.909 0.00 0.00 36.16 3.55
172 173 4.686191 TTGGTTCTAAAACGGTCTACCA 57.314 40.909 0.00 0.00 36.16 3.25
173 174 5.350640 CAGATTGGTTCTAAAACGGTCTACC 59.649 44.000 0.00 0.00 36.16 3.18
174 175 6.161381 TCAGATTGGTTCTAAAACGGTCTAC 58.839 40.000 0.00 0.00 36.16 2.59
175 176 6.349243 TCAGATTGGTTCTAAAACGGTCTA 57.651 37.500 0.00 0.00 36.16 2.59
176 177 5.223449 TCAGATTGGTTCTAAAACGGTCT 57.777 39.130 0.00 0.00 36.16 3.85
177 178 5.934935 TTCAGATTGGTTCTAAAACGGTC 57.065 39.130 0.00 0.00 36.16 4.79
178 179 6.238648 AGATTCAGATTGGTTCTAAAACGGT 58.761 36.000 0.00 0.00 36.16 4.83
179 180 6.743575 AGATTCAGATTGGTTCTAAAACGG 57.256 37.500 0.00 0.00 36.16 4.44
180 181 7.584987 ACAAGATTCAGATTGGTTCTAAAACG 58.415 34.615 0.00 0.00 36.16 3.60
183 184 9.739276 ACATACAAGATTCAGATTGGTTCTAAA 57.261 29.630 0.00 0.00 31.77 1.85
186 187 8.543774 ACTACATACAAGATTCAGATTGGTTCT 58.456 33.333 0.00 0.00 33.90 3.01
187 188 8.723942 ACTACATACAAGATTCAGATTGGTTC 57.276 34.615 0.00 0.00 0.00 3.62
188 189 9.167311 GAACTACATACAAGATTCAGATTGGTT 57.833 33.333 0.00 0.00 0.00 3.67
189 190 8.321353 TGAACTACATACAAGATTCAGATTGGT 58.679 33.333 0.00 0.00 0.00 3.67
190 191 8.722480 TGAACTACATACAAGATTCAGATTGG 57.278 34.615 0.00 0.00 0.00 3.16
191 192 9.591792 TCTGAACTACATACAAGATTCAGATTG 57.408 33.333 9.76 0.00 44.26 2.67
195 196 9.591792 TCAATCTGAACTACATACAAGATTCAG 57.408 33.333 5.61 5.61 42.77 3.02
196 197 9.591792 CTCAATCTGAACTACATACAAGATTCA 57.408 33.333 0.00 0.00 0.00 2.57
197 198 9.039870 CCTCAATCTGAACTACATACAAGATTC 57.960 37.037 0.00 0.00 0.00 2.52
198 199 7.989741 CCCTCAATCTGAACTACATACAAGATT 59.010 37.037 0.00 0.00 0.00 2.40
199 200 7.419518 CCCCTCAATCTGAACTACATACAAGAT 60.420 40.741 0.00 0.00 0.00 2.40
200 201 6.127054 CCCCTCAATCTGAACTACATACAAGA 60.127 42.308 0.00 0.00 0.00 3.02
201 202 6.051717 CCCCTCAATCTGAACTACATACAAG 58.948 44.000 0.00 0.00 0.00 3.16
202 203 5.724370 TCCCCTCAATCTGAACTACATACAA 59.276 40.000 0.00 0.00 0.00 2.41
203 204 5.128827 GTCCCCTCAATCTGAACTACATACA 59.871 44.000 0.00 0.00 0.00 2.29
204 205 5.128827 TGTCCCCTCAATCTGAACTACATAC 59.871 44.000 0.00 0.00 0.00 2.39
205 206 5.277250 TGTCCCCTCAATCTGAACTACATA 58.723 41.667 0.00 0.00 0.00 2.29
206 207 4.104086 TGTCCCCTCAATCTGAACTACAT 58.896 43.478 0.00 0.00 0.00 2.29
207 208 3.516586 TGTCCCCTCAATCTGAACTACA 58.483 45.455 0.00 0.00 0.00 2.74
208 209 4.762289 ATGTCCCCTCAATCTGAACTAC 57.238 45.455 0.00 0.00 0.00 2.73
209 210 8.561536 TTTATATGTCCCCTCAATCTGAACTA 57.438 34.615 0.00 0.00 0.00 2.24
210 211 7.127955 ACTTTATATGTCCCCTCAATCTGAACT 59.872 37.037 0.00 0.00 0.00 3.01
211 212 7.283329 ACTTTATATGTCCCCTCAATCTGAAC 58.717 38.462 0.00 0.00 0.00 3.18
212 213 7.451731 ACTTTATATGTCCCCTCAATCTGAA 57.548 36.000 0.00 0.00 0.00 3.02
213 214 7.235606 CCTACTTTATATGTCCCCTCAATCTGA 59.764 40.741 0.00 0.00 0.00 3.27
214 215 7.390027 CCTACTTTATATGTCCCCTCAATCTG 58.610 42.308 0.00 0.00 0.00 2.90
215 216 6.502158 CCCTACTTTATATGTCCCCTCAATCT 59.498 42.308 0.00 0.00 0.00 2.40
216 217 6.272558 ACCCTACTTTATATGTCCCCTCAATC 59.727 42.308 0.00 0.00 0.00 2.67
217 218 6.158260 ACCCTACTTTATATGTCCCCTCAAT 58.842 40.000 0.00 0.00 0.00 2.57
218 219 5.544682 ACCCTACTTTATATGTCCCCTCAA 58.455 41.667 0.00 0.00 0.00 3.02
219 220 5.102783 AGACCCTACTTTATATGTCCCCTCA 60.103 44.000 0.00 0.00 0.00 3.86
220 221 5.404395 AGACCCTACTTTATATGTCCCCTC 58.596 45.833 0.00 0.00 0.00 4.30
221 222 5.435545 AGACCCTACTTTATATGTCCCCT 57.564 43.478 0.00 0.00 0.00 4.79
222 223 6.321321 ACTAGACCCTACTTTATATGTCCCC 58.679 44.000 0.00 0.00 0.00 4.81
232 233 8.925338 CAAGGACAATATACTAGACCCTACTTT 58.075 37.037 0.00 0.00 0.00 2.66
233 234 8.066247 ACAAGGACAATATACTAGACCCTACTT 58.934 37.037 0.00 0.00 0.00 2.24
234 235 7.593653 ACAAGGACAATATACTAGACCCTACT 58.406 38.462 0.00 0.00 0.00 2.57
235 236 7.836479 ACAAGGACAATATACTAGACCCTAC 57.164 40.000 0.00 0.00 0.00 3.18
236 237 8.505246 TGTACAAGGACAATATACTAGACCCTA 58.495 37.037 0.00 0.00 0.00 3.53
237 238 7.287235 GTGTACAAGGACAATATACTAGACCCT 59.713 40.741 0.00 0.00 0.00 4.34
238 239 7.432059 GTGTACAAGGACAATATACTAGACCC 58.568 42.308 0.00 0.00 0.00 4.46
239 240 7.137426 CGTGTACAAGGACAATATACTAGACC 58.863 42.308 0.00 0.00 0.00 3.85
240 241 7.701445 ACGTGTACAAGGACAATATACTAGAC 58.299 38.462 13.47 0.00 0.00 2.59
241 242 7.870509 ACGTGTACAAGGACAATATACTAGA 57.129 36.000 13.47 0.00 0.00 2.43
244 245 9.309516 CAAATACGTGTACAAGGACAATATACT 57.690 33.333 13.47 0.00 0.00 2.12
245 246 9.090692 ACAAATACGTGTACAAGGACAATATAC 57.909 33.333 13.47 0.00 0.00 1.47
247 248 9.826574 ATACAAATACGTGTACAAGGACAATAT 57.173 29.630 13.47 0.00 36.83 1.28
249 250 9.090692 GTATACAAATACGTGTACAAGGACAAT 57.909 33.333 13.47 0.00 36.83 2.71
250 251 8.087136 TGTATACAAATACGTGTACAAGGACAA 58.913 33.333 13.47 0.00 39.57 3.18
251 252 7.600960 TGTATACAAATACGTGTACAAGGACA 58.399 34.615 13.47 0.00 39.57 4.02
252 253 8.638685 ATGTATACAAATACGTGTACAAGGAC 57.361 34.615 10.14 0.00 43.72 3.85
290 291 9.846248 CACGTCTCAATATATAGATGATCACAA 57.154 33.333 0.00 0.00 33.74 3.33
291 292 9.231297 TCACGTCTCAATATATAGATGATCACA 57.769 33.333 0.00 0.00 33.74 3.58
294 295 9.232082 GCTTCACGTCTCAATATATAGATGATC 57.768 37.037 10.46 0.00 33.74 2.92
295 296 8.965819 AGCTTCACGTCTCAATATATAGATGAT 58.034 33.333 10.46 0.00 33.74 2.45
296 297 8.239998 CAGCTTCACGTCTCAATATATAGATGA 58.760 37.037 10.46 0.00 33.74 2.92
297 298 7.487509 CCAGCTTCACGTCTCAATATATAGATG 59.512 40.741 3.96 3.96 35.32 2.90
298 299 7.394641 TCCAGCTTCACGTCTCAATATATAGAT 59.605 37.037 0.00 0.00 0.00 1.98
299 300 6.715264 TCCAGCTTCACGTCTCAATATATAGA 59.285 38.462 0.00 0.00 0.00 1.98
300 301 6.914259 TCCAGCTTCACGTCTCAATATATAG 58.086 40.000 0.00 0.00 0.00 1.31
301 302 6.894339 TCCAGCTTCACGTCTCAATATATA 57.106 37.500 0.00 0.00 0.00 0.86
302 303 5.791336 TCCAGCTTCACGTCTCAATATAT 57.209 39.130 0.00 0.00 0.00 0.86
303 304 5.069119 ACATCCAGCTTCACGTCTCAATATA 59.931 40.000 0.00 0.00 0.00 0.86
304 305 4.141846 ACATCCAGCTTCACGTCTCAATAT 60.142 41.667 0.00 0.00 0.00 1.28
305 306 3.195610 ACATCCAGCTTCACGTCTCAATA 59.804 43.478 0.00 0.00 0.00 1.90
306 307 2.027745 ACATCCAGCTTCACGTCTCAAT 60.028 45.455 0.00 0.00 0.00 2.57
307 308 1.344438 ACATCCAGCTTCACGTCTCAA 59.656 47.619 0.00 0.00 0.00 3.02
308 309 0.969149 ACATCCAGCTTCACGTCTCA 59.031 50.000 0.00 0.00 0.00 3.27
309 310 1.067565 TGACATCCAGCTTCACGTCTC 60.068 52.381 0.00 0.00 0.00 3.36
310 311 0.969149 TGACATCCAGCTTCACGTCT 59.031 50.000 0.00 0.00 0.00 4.18
311 312 1.461127 GTTGACATCCAGCTTCACGTC 59.539 52.381 0.00 0.00 0.00 4.34
312 313 1.512926 GTTGACATCCAGCTTCACGT 58.487 50.000 0.00 0.00 0.00 4.49
313 314 0.798776 GGTTGACATCCAGCTTCACG 59.201 55.000 0.00 0.00 0.00 4.35
314 315 1.896220 TGGTTGACATCCAGCTTCAC 58.104 50.000 0.82 0.00 0.00 3.18
315 316 2.885135 ATGGTTGACATCCAGCTTCA 57.115 45.000 10.88 0.00 38.42 3.02
324 325 1.614996 TTTGCGTGGATGGTTGACAT 58.385 45.000 0.00 0.00 44.18 3.06
325 326 1.066303 GTTTTGCGTGGATGGTTGACA 59.934 47.619 0.00 0.00 0.00 3.58
326 327 1.601914 GGTTTTGCGTGGATGGTTGAC 60.602 52.381 0.00 0.00 0.00 3.18
327 328 0.671251 GGTTTTGCGTGGATGGTTGA 59.329 50.000 0.00 0.00 0.00 3.18
328 329 0.319469 GGGTTTTGCGTGGATGGTTG 60.319 55.000 0.00 0.00 0.00 3.77
329 330 0.469144 AGGGTTTTGCGTGGATGGTT 60.469 50.000 0.00 0.00 0.00 3.67
330 331 0.402504 TAGGGTTTTGCGTGGATGGT 59.597 50.000 0.00 0.00 0.00 3.55
331 332 1.540267 TTAGGGTTTTGCGTGGATGG 58.460 50.000 0.00 0.00 0.00 3.51
332 333 2.352323 GGTTTAGGGTTTTGCGTGGATG 60.352 50.000 0.00 0.00 0.00 3.51
333 334 1.890489 GGTTTAGGGTTTTGCGTGGAT 59.110 47.619 0.00 0.00 0.00 3.41
334 335 1.320507 GGTTTAGGGTTTTGCGTGGA 58.679 50.000 0.00 0.00 0.00 4.02
335 336 1.033574 TGGTTTAGGGTTTTGCGTGG 58.966 50.000 0.00 0.00 0.00 4.94
336 337 2.035321 ACATGGTTTAGGGTTTTGCGTG 59.965 45.455 0.00 0.00 0.00 5.34
337 338 2.035321 CACATGGTTTAGGGTTTTGCGT 59.965 45.455 0.00 0.00 0.00 5.24
338 339 2.035321 ACACATGGTTTAGGGTTTTGCG 59.965 45.455 0.00 0.00 0.00 4.85
339 340 3.744238 ACACATGGTTTAGGGTTTTGC 57.256 42.857 0.00 0.00 0.00 3.68
350 351 5.531287 GTCTCCTTAGTTGAAACACATGGTT 59.469 40.000 0.00 0.00 42.98 3.67
351 352 5.063880 GTCTCCTTAGTTGAAACACATGGT 58.936 41.667 0.00 0.00 0.00 3.55
352 353 5.308825 AGTCTCCTTAGTTGAAACACATGG 58.691 41.667 0.00 0.00 0.00 3.66
353 354 6.867662 AAGTCTCCTTAGTTGAAACACATG 57.132 37.500 0.00 0.00 0.00 3.21
354 355 6.645415 CGTAAGTCTCCTTAGTTGAAACACAT 59.355 38.462 0.00 0.00 33.87 3.21
355 356 5.981315 CGTAAGTCTCCTTAGTTGAAACACA 59.019 40.000 0.00 0.00 33.87 3.72
356 357 5.404667 CCGTAAGTCTCCTTAGTTGAAACAC 59.595 44.000 0.00 0.00 33.87 3.32
357 358 5.535333 CCGTAAGTCTCCTTAGTTGAAACA 58.465 41.667 0.00 0.00 33.87 2.83
358 359 4.388165 GCCGTAAGTCTCCTTAGTTGAAAC 59.612 45.833 0.00 0.00 33.87 2.78
359 360 4.282703 AGCCGTAAGTCTCCTTAGTTGAAA 59.717 41.667 0.00 0.00 33.87 2.69
360 361 3.830755 AGCCGTAAGTCTCCTTAGTTGAA 59.169 43.478 0.00 0.00 33.87 2.69
361 362 3.428532 AGCCGTAAGTCTCCTTAGTTGA 58.571 45.455 0.00 0.00 33.87 3.18
362 363 3.870633 AGCCGTAAGTCTCCTTAGTTG 57.129 47.619 0.00 0.00 33.87 3.16
363 364 4.157472 GTGTAGCCGTAAGTCTCCTTAGTT 59.843 45.833 0.00 0.00 33.87 2.24
364 365 3.693578 GTGTAGCCGTAAGTCTCCTTAGT 59.306 47.826 0.00 0.00 33.87 2.24
365 366 3.242673 CGTGTAGCCGTAAGTCTCCTTAG 60.243 52.174 0.00 0.00 33.87 2.18
366 367 2.679837 CGTGTAGCCGTAAGTCTCCTTA 59.320 50.000 0.00 0.00 31.89 2.69
367 368 1.471684 CGTGTAGCCGTAAGTCTCCTT 59.528 52.381 0.00 0.00 34.56 3.36
472 532 1.679139 CGTGGTGGCCATGATTACAT 58.321 50.000 9.72 0.00 42.73 2.29
502 562 2.203567 CCGGGCTTTTGGGACCAA 60.204 61.111 0.00 0.00 32.93 3.67
518 578 2.131294 ATCTATGCTCGACGCCGACC 62.131 60.000 0.00 0.00 40.30 4.79
526 586 7.652300 AATACGCAAATAAATCTATGCTCGA 57.348 32.000 0.00 0.00 36.67 4.04
568 628 9.726232 CAAGACCATGTTATGTCATAAAAGATG 57.274 33.333 6.85 9.30 0.00 2.90
587 647 7.174413 TGGTCAAAATATCATCTTCAAGACCA 58.826 34.615 0.00 0.00 46.63 4.02
757 817 4.757149 GTGCCACCTCCTATTCATGATAAC 59.243 45.833 0.00 0.00 0.00 1.89
797 857 6.509418 AAAAAGAAAAAGGGTTGGCTTTTC 57.491 33.333 0.00 0.00 38.68 2.29
836 897 2.747396 TGCCATGATTTCAAGGTTGC 57.253 45.000 0.00 0.00 37.08 4.17
839 900 2.610232 GCGTTTGCCATGATTTCAAGGT 60.610 45.455 0.00 0.00 37.08 3.50
853 914 2.373524 TTCTGTGTGAGCGCGTTTGC 62.374 55.000 8.43 0.00 37.91 3.68
931 1001 0.034476 TTGCTCAGTGCTCTCTGGTG 59.966 55.000 0.00 0.00 43.37 4.17
1028 1119 4.704103 AGGAGGACAGGGCGAGCA 62.704 66.667 0.00 0.00 0.00 4.26
1185 1279 4.704833 CACGTCACCTGCTGGGGG 62.705 72.222 12.54 4.65 40.68 5.40
1210 1304 2.817834 CGAAATCGGGCAGGCGAA 60.818 61.111 0.00 0.00 35.37 4.70
1211 1305 4.077184 ACGAAATCGGGCAGGCGA 62.077 61.111 7.81 0.00 44.95 5.54
1212 1306 3.864686 CACGAAATCGGGCAGGCG 61.865 66.667 7.81 0.00 44.95 5.52
1219 1313 2.987593 CGACGAGCACGAAATCGG 59.012 61.111 11.40 0.00 43.12 4.18
1382 1477 1.908066 GCCACAACACCGAATCGTCC 61.908 60.000 0.82 0.00 0.00 4.79
1447 1586 7.174253 ACGAAACAGAGCTAAATAAATTCACCA 59.826 33.333 0.00 0.00 0.00 4.17
1456 1595 3.184541 GGCGACGAAACAGAGCTAAATA 58.815 45.455 0.00 0.00 0.00 1.40
1468 1607 3.048337 ACTATTTTCTGGGCGACGAAA 57.952 42.857 0.00 0.00 0.00 3.46
1469 1608 2.754946 ACTATTTTCTGGGCGACGAA 57.245 45.000 0.00 0.00 0.00 3.85
1470 1609 2.100252 CCTACTATTTTCTGGGCGACGA 59.900 50.000 0.00 0.00 0.00 4.20
1471 1610 2.100252 TCCTACTATTTTCTGGGCGACG 59.900 50.000 0.00 0.00 0.00 5.12
1472 1611 3.132467 AGTCCTACTATTTTCTGGGCGAC 59.868 47.826 0.00 0.00 0.00 5.19
1474 1613 3.821421 AGTCCTACTATTTTCTGGGCG 57.179 47.619 0.00 0.00 0.00 6.13
1476 1615 8.265055 TGAATTGTAGTCCTACTATTTTCTGGG 58.735 37.037 12.98 0.00 40.01 4.45
1477 1616 9.099454 GTGAATTGTAGTCCTACTATTTTCTGG 57.901 37.037 12.98 0.00 40.01 3.86
1478 1617 9.099454 GGTGAATTGTAGTCCTACTATTTTCTG 57.901 37.037 12.98 0.00 40.01 3.02
1480 1619 9.614792 ATGGTGAATTGTAGTCCTACTATTTTC 57.385 33.333 12.98 9.94 40.01 2.29
1483 1622 9.656323 TCTATGGTGAATTGTAGTCCTACTATT 57.344 33.333 12.01 12.01 41.63 1.73
1485 1624 9.298250 GATCTATGGTGAATTGTAGTCCTACTA 57.702 37.037 6.07 0.00 37.00 1.82
1486 1625 7.785028 TGATCTATGGTGAATTGTAGTCCTACT 59.215 37.037 6.07 0.00 37.00 2.57
1488 1627 7.255977 GCTGATCTATGGTGAATTGTAGTCCTA 60.256 40.741 0.00 0.00 0.00 2.94
1491 1630 6.520272 AGCTGATCTATGGTGAATTGTAGTC 58.480 40.000 0.00 0.00 0.00 2.59
1581 1728 7.936496 TTAAGATATGTCCAGCAAATTGTCA 57.064 32.000 0.00 0.00 0.00 3.58
1608 1755 9.904198 TCAAAATACACTATCATCCAAGATTGA 57.096 29.630 0.00 0.00 0.00 2.57
1636 1783 5.410067 CACACAAAAACATTGAACCTCAGT 58.590 37.500 0.00 0.00 0.00 3.41
1637 1784 4.268405 GCACACAAAAACATTGAACCTCAG 59.732 41.667 0.00 0.00 0.00 3.35
1655 1802 7.976734 AGTAGTCTCAAATACTCAATAGCACAC 59.023 37.037 0.00 0.00 0.00 3.82
1656 1803 7.976175 CAGTAGTCTCAAATACTCAATAGCACA 59.024 37.037 0.00 0.00 29.77 4.57
1657 1804 7.976734 ACAGTAGTCTCAAATACTCAATAGCAC 59.023 37.037 0.00 0.00 29.77 4.40
1658 1805 7.976175 CACAGTAGTCTCAAATACTCAATAGCA 59.024 37.037 0.00 0.00 29.77 3.49
1659 1806 7.043059 GCACAGTAGTCTCAAATACTCAATAGC 60.043 40.741 0.00 0.00 29.77 2.97
1853 2003 1.070134 GCCTGTGTCTGTGTGTAAGGA 59.930 52.381 0.00 0.00 0.00 3.36
1929 2079 4.476752 GGTATCGGCCCCAACGCA 62.477 66.667 0.00 0.00 0.00 5.24
1953 2103 3.064207 TGAACATTGTGGAACTAGACGC 58.936 45.455 0.00 0.00 38.04 5.19
2044 2194 5.065731 GCTATGAATGAGGACTTTGGAAGTG 59.934 44.000 0.00 0.00 43.03 3.16
2049 2199 5.888105 CAAAGCTATGAATGAGGACTTTGG 58.112 41.667 0.00 0.00 39.04 3.28
2110 2261 8.694975 AACATATTATAGCATAGAGTTCAGCG 57.305 34.615 0.00 0.00 0.00 5.18
2198 2349 2.175878 CAACTGAGGGGACAGAGTTG 57.824 55.000 0.00 0.00 42.05 3.16
2288 2439 2.961526 TCTTTCCCGAGCTGTACATC 57.038 50.000 0.00 0.00 0.00 3.06
2402 2553 1.488705 ATGACAGCGGGAACTGGGAA 61.489 55.000 0.00 0.00 42.21 3.97
2441 2592 2.358737 GTCCAACTGGTCTGCCCG 60.359 66.667 0.00 0.00 35.15 6.13
2525 2676 9.634163 CACAAATGTTGCATATAATCAGCATAT 57.366 29.630 7.14 0.00 38.19 1.78
2702 2853 7.905604 TGAGTAGTACAAATTTGATGTGGAG 57.094 36.000 24.64 0.00 32.27 3.86
2789 2940 4.164988 ACCTTAAGCCAAGCATACTGATCT 59.835 41.667 0.00 0.00 32.41 2.75
2825 2976 4.213906 CGCAATGCAATATGACATGGAGTA 59.786 41.667 5.91 0.00 0.00 2.59
2848 2999 1.813513 TTCAGAAACTAGCAGCAGCC 58.186 50.000 0.00 0.00 43.56 4.85
2911 3063 7.628769 ACCTTTCTAGCAGAGTACTAAGTAC 57.371 40.000 0.00 0.00 39.10 2.73
2912 3064 8.766476 TCTACCTTTCTAGCAGAGTACTAAGTA 58.234 37.037 0.00 0.00 0.00 2.24
2913 3065 7.631933 TCTACCTTTCTAGCAGAGTACTAAGT 58.368 38.462 0.00 0.00 0.00 2.24
2914 3066 7.771826 ACTCTACCTTTCTAGCAGAGTACTAAG 59.228 40.741 0.00 0.00 39.00 2.18
2915 3067 7.553402 CACTCTACCTTTCTAGCAGAGTACTAA 59.447 40.741 0.00 0.00 38.87 2.24
2946 3099 4.880120 TCCGAGTGTAGGTGTAACTATGAG 59.120 45.833 0.00 0.00 36.74 2.90
2981 3139 4.517453 TGGAAGAATACACCGACAAAAAGG 59.483 41.667 0.00 0.00 0.00 3.11
2982 3140 5.682943 TGGAAGAATACACCGACAAAAAG 57.317 39.130 0.00 0.00 0.00 2.27
3011 3193 4.663636 AGCTAAGCACATCGTGTTTAAC 57.336 40.909 5.20 1.63 38.38 2.01
3205 3387 3.127533 GCAAAGGCTCCATCGCGT 61.128 61.111 5.77 0.00 36.96 6.01
3269 3451 3.043586 GAGTCATACCGTGCGTTCATAG 58.956 50.000 0.00 0.00 0.00 2.23
3308 3490 2.098934 ACAAATTTGAACAGTGCTGCGA 59.901 40.909 24.64 0.00 0.00 5.10
3310 3492 3.847037 CACAAATTTGAACAGTGCTGC 57.153 42.857 24.64 0.00 0.00 5.25
3354 3536 7.626240 GCGAAATGATCATCTGAAACCTTTACA 60.626 37.037 9.06 0.00 0.00 2.41
3416 3598 1.026182 TGAACAGCGCCACATGGATC 61.026 55.000 2.29 0.00 37.39 3.36
3427 3609 2.090658 GCCGATCGTTATATGAACAGCG 59.909 50.000 15.09 0.00 0.00 5.18
3442 3624 1.436983 GGTTTCCACCATCGCCGATC 61.437 60.000 0.00 0.00 43.61 3.69
3497 3682 6.587206 TTGGATTCAGATGCATTAACAACA 57.413 33.333 0.00 0.00 33.35 3.33
3526 3711 7.665690 AGACATATCAATCTAGTGGCACTAAG 58.334 38.462 26.12 19.45 29.00 2.18
3549 3734 9.742144 GTACCTGAAGATAGATACCAAGATAGA 57.258 37.037 0.00 0.00 0.00 1.98
3559 3744 8.333984 TCGGATTATGGTACCTGAAGATAGATA 58.666 37.037 14.36 0.00 0.00 1.98
3560 3745 7.182760 TCGGATTATGGTACCTGAAGATAGAT 58.817 38.462 14.36 0.00 0.00 1.98
3561 3746 6.549242 TCGGATTATGGTACCTGAAGATAGA 58.451 40.000 14.36 1.45 0.00 1.98
3562 3747 6.835819 TCGGATTATGGTACCTGAAGATAG 57.164 41.667 14.36 0.00 0.00 2.08
3602 3787 1.376037 AAAGCTCGCTTCCCGGAAG 60.376 57.895 21.27 21.27 42.03 3.46
3641 3826 2.316867 CGCATGCGTGGAGTTGACA 61.317 57.895 31.33 0.00 34.35 3.58
3656 3841 4.560743 TGCCAAGTCCAGTGCGCA 62.561 61.111 5.66 5.66 0.00 6.09
3695 3880 3.324556 TCCACACATCATCTGTTCTCACA 59.675 43.478 0.00 0.00 35.29 3.58
3710 3895 0.249120 CCAGCGAGGTTATCCACACA 59.751 55.000 0.00 0.00 35.89 3.72
3764 3949 5.255710 ACATGAGTATCTTCCTGAACTCG 57.744 43.478 0.00 0.00 40.99 4.18
3947 4134 2.715046 ACATGCCAACTATGACACAGG 58.285 47.619 0.00 0.00 0.00 4.00
3949 4136 5.048364 GGTTAAACATGCCAACTATGACACA 60.048 40.000 0.00 0.00 0.00 3.72
3950 4137 5.399013 GGTTAAACATGCCAACTATGACAC 58.601 41.667 0.00 0.00 0.00 3.67
3987 4175 0.309302 TGTGGTTTGACGCCATTTCG 59.691 50.000 0.00 0.00 38.40 3.46
3997 4185 1.225855 GACATCTGCGTGTGGTTTGA 58.774 50.000 0.00 0.00 31.16 2.69
3998 4186 0.943673 TGACATCTGCGTGTGGTTTG 59.056 50.000 0.00 0.00 31.16 2.93
3999 4187 1.896220 ATGACATCTGCGTGTGGTTT 58.104 45.000 0.00 0.00 31.16 3.27
4000 4188 2.028112 ACTATGACATCTGCGTGTGGTT 60.028 45.455 0.00 0.00 31.16 3.67
4001 4189 1.550524 ACTATGACATCTGCGTGTGGT 59.449 47.619 0.00 0.00 31.16 4.16
4002 4190 2.196749 GACTATGACATCTGCGTGTGG 58.803 52.381 0.00 0.00 31.16 4.17
4003 4191 1.848608 CGACTATGACATCTGCGTGTG 59.151 52.381 0.00 0.00 31.16 3.82
4004 4192 1.799181 GCGACTATGACATCTGCGTGT 60.799 52.381 0.00 0.00 34.39 4.49
4005 4193 0.848942 GCGACTATGACATCTGCGTG 59.151 55.000 0.00 0.00 0.00 5.34
4006 4194 0.741326 AGCGACTATGACATCTGCGT 59.259 50.000 0.00 0.00 0.00 5.24
4007 4195 1.001924 AGAGCGACTATGACATCTGCG 60.002 52.381 0.00 0.00 0.00 5.18
4008 4196 2.791383 AGAGCGACTATGACATCTGC 57.209 50.000 0.00 0.00 0.00 4.26
4009 4197 3.637432 GGAAGAGCGACTATGACATCTG 58.363 50.000 0.00 0.00 0.00 2.90
4010 4198 2.292016 CGGAAGAGCGACTATGACATCT 59.708 50.000 0.00 0.00 0.00 2.90
4011 4199 2.656085 CGGAAGAGCGACTATGACATC 58.344 52.381 0.00 0.00 0.00 3.06
4012 4200 1.269309 GCGGAAGAGCGACTATGACAT 60.269 52.381 0.00 0.00 0.00 3.06
4013 4201 0.100682 GCGGAAGAGCGACTATGACA 59.899 55.000 0.00 0.00 0.00 3.58
4014 4202 0.382515 AGCGGAAGAGCGACTATGAC 59.617 55.000 0.00 0.00 43.00 3.06
4015 4203 0.663688 GAGCGGAAGAGCGACTATGA 59.336 55.000 0.00 0.00 43.00 2.15
4016 4204 0.318275 GGAGCGGAAGAGCGACTATG 60.318 60.000 0.00 0.00 43.00 2.23
4017 4205 1.457009 GGGAGCGGAAGAGCGACTAT 61.457 60.000 0.00 0.00 43.00 2.12
4018 4206 2.119655 GGGAGCGGAAGAGCGACTA 61.120 63.158 0.00 0.00 43.00 2.59
4019 4207 3.453679 GGGAGCGGAAGAGCGACT 61.454 66.667 0.00 0.00 43.00 4.18
4020 4208 4.856607 CGGGAGCGGAAGAGCGAC 62.857 72.222 0.00 0.00 43.00 5.19
4598 4871 2.115910 CAAGTGCAGCCCTCCCAA 59.884 61.111 0.00 0.00 0.00 4.12
4649 4922 3.564218 GATCGGGCCCTGCATCCT 61.564 66.667 22.43 0.00 0.00 3.24
4740 5013 1.289066 CATGTCCGACTCACACCGT 59.711 57.895 0.00 0.00 0.00 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.