Multiple sequence alignment - TraesCS6A01G115000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G115000 chr6A 100.000 4307 0 0 1 4307 84971644 84967338 0.000000e+00 7954.0
1 TraesCS6A01G115000 chr6D 92.766 3760 156 39 285 3997 67393666 67389976 0.000000e+00 5330.0
2 TraesCS6A01G115000 chr6D 93.007 286 18 2 2 286 67394263 67393979 2.400000e-112 416.0
3 TraesCS6A01G115000 chr4B 81.923 1986 314 27 898 2871 55756617 55754665 0.000000e+00 1637.0
4 TraesCS6A01G115000 chr4B 82.799 1436 229 15 1442 2871 55925157 55923734 0.000000e+00 1267.0
5 TraesCS6A01G115000 chr4B 80.720 389 68 6 2892 3277 55923683 55923299 3.260000e-76 296.0
6 TraesCS6A01G115000 chr4D 81.823 1986 316 29 898 2871 38354956 38353004 0.000000e+00 1626.0
7 TraesCS6A01G115000 chr4D 82.171 1520 241 22 1361 2871 38446360 38447858 0.000000e+00 1279.0
8 TraesCS6A01G115000 chr4D 81.152 382 64 7 2892 3270 38447909 38448285 2.520000e-77 300.0
9 TraesCS6A01G115000 chr4A 81.823 1986 316 30 898 2871 562451995 562453947 0.000000e+00 1626.0
10 TraesCS6A01G115000 chr4A 82.159 1519 243 20 1361 2871 562405164 562406662 0.000000e+00 1279.0
11 TraesCS6A01G115000 chr4A 80.840 381 67 5 2892 3270 562406713 562407089 1.170000e-75 294.0
12 TraesCS6A01G115000 chrUn 82.908 392 64 1 1271 1659 479657734 479657343 2.460000e-92 350.0
13 TraesCS6A01G115000 chr3D 93.056 72 2 2 4236 4307 64615767 64615699 7.620000e-18 102.0
14 TraesCS6A01G115000 chr2D 91.892 74 2 3 4235 4307 482806559 482806629 2.740000e-17 100.0
15 TraesCS6A01G115000 chr2A 92.958 71 2 2 4237 4307 54604458 54604525 2.740000e-17 100.0
16 TraesCS6A01G115000 chr3B 87.952 83 6 3 4225 4307 107623934 107623856 1.280000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G115000 chr6A 84967338 84971644 4306 True 7954.0 7954 100.0000 1 4307 1 chr6A.!!$R1 4306
1 TraesCS6A01G115000 chr6D 67389976 67394263 4287 True 2873.0 5330 92.8865 2 3997 2 chr6D.!!$R1 3995
2 TraesCS6A01G115000 chr4B 55754665 55756617 1952 True 1637.0 1637 81.9230 898 2871 1 chr4B.!!$R1 1973
3 TraesCS6A01G115000 chr4B 55923299 55925157 1858 True 781.5 1267 81.7595 1442 3277 2 chr4B.!!$R2 1835
4 TraesCS6A01G115000 chr4D 38353004 38354956 1952 True 1626.0 1626 81.8230 898 2871 1 chr4D.!!$R1 1973
5 TraesCS6A01G115000 chr4D 38446360 38448285 1925 False 789.5 1279 81.6615 1361 3270 2 chr4D.!!$F1 1909
6 TraesCS6A01G115000 chr4A 562451995 562453947 1952 False 1626.0 1626 81.8230 898 2871 1 chr4A.!!$F1 1973
7 TraesCS6A01G115000 chr4A 562405164 562407089 1925 False 786.5 1279 81.4995 1361 3270 2 chr4A.!!$F2 1909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.041982 ACTGGTGTTTTGTTGGGGGT 59.958 50.000 0.00 0.0 0.00 4.95 F
65 66 1.468520 CTTGATACGGTGCAGGGTTTG 59.531 52.381 0.00 0.0 0.00 2.93 F
325 640 1.906574 AGTTCTTAACGATCAGGGCCA 59.093 47.619 6.18 0.0 36.23 5.36 F
571 906 2.091885 TCCAGTGTTTTTCCTGGCTCTT 60.092 45.455 0.77 0.0 46.43 2.85 F
1343 1690 2.174363 TTGGTCAGTGCTGATGTGAG 57.826 50.000 5.11 0.0 42.18 3.51 F
3156 3536 0.033504 CCACAGTGAGCACGGTTAGT 59.966 55.000 0.62 0.0 37.63 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1343 1690 0.038166 TCTTGATGAGGTTGGTGGGC 59.962 55.00 0.00 0.0 0.00 5.36 R
2159 2509 0.025001 CTTAAGCATGACGCCGTTCG 59.975 55.00 0.00 0.0 44.04 3.95 R
2265 2615 4.839121 ACTTTATGCTTTCACGGATACCA 58.161 39.13 0.00 0.0 0.00 3.25 R
2637 2987 2.421424 GACAACTGGATCTTCATGTGCC 59.579 50.00 0.00 0.0 0.00 5.01 R
3292 3672 0.325933 AGAGCCTACTGCATTGCACA 59.674 50.00 7.38 0.0 44.83 4.57 R
4197 4589 0.035439 GAACGGGAGGCCTTTCATCA 60.035 55.00 6.77 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.041982 ACTGGTGTTTTGTTGGGGGT 59.958 50.000 0.00 0.00 0.00 4.95
32 33 3.019564 GTTGGGGGTTCTGATTCTGATG 58.980 50.000 0.00 0.00 0.00 3.07
65 66 1.468520 CTTGATACGGTGCAGGGTTTG 59.531 52.381 0.00 0.00 0.00 2.93
89 90 3.006940 CCGCACAAGTTTATCCAAGCTA 58.993 45.455 0.00 0.00 0.00 3.32
91 92 4.437390 CCGCACAAGTTTATCCAAGCTAAG 60.437 45.833 0.00 0.00 0.00 2.18
99 101 7.383102 AGTTTATCCAAGCTAAGTCAATGTG 57.617 36.000 0.00 0.00 0.00 3.21
137 139 6.981762 TGAAGTTTTACGTTTCACCAACTA 57.018 33.333 0.00 0.00 32.53 2.24
154 156 5.045797 ACCAACTAATCCCTTCTTACCAGTC 60.046 44.000 0.00 0.00 0.00 3.51
155 157 5.045869 CCAACTAATCCCTTCTTACCAGTCA 60.046 44.000 0.00 0.00 0.00 3.41
173 175 5.406780 CCAGTCAACTCAAGTAGATGTTCAC 59.593 44.000 0.00 0.00 30.32 3.18
179 181 7.879677 TCAACTCAAGTAGATGTTCACATTCAT 59.120 33.333 0.00 0.00 36.57 2.57
181 183 9.896645 AACTCAAGTAGATGTTCACATTCATAT 57.103 29.630 0.00 0.00 36.57 1.78
197 199 6.153340 ACATTCATATGGAACCAGGAAAACTG 59.847 38.462 2.13 0.00 41.18 3.16
199 201 6.604795 ATTCATATGGAACCAGGAAAACTGAG 59.395 38.462 2.13 0.00 43.56 3.35
200 202 8.768208 ATTCATATGGAACCAGGAAAACTGAGC 61.768 40.741 2.13 0.00 43.56 4.26
210 212 2.481952 GGAAAACTGAGCTGCTGTACTG 59.518 50.000 7.01 0.00 0.00 2.74
211 213 2.175878 AAACTGAGCTGCTGTACTGG 57.824 50.000 7.01 0.00 0.00 4.00
251 253 4.127171 GTGGCTAACAAACTTCTCTGTCA 58.873 43.478 0.00 0.00 0.00 3.58
279 281 7.978099 AAATAGGGAATAAAGATGCCAACTT 57.022 32.000 0.00 0.00 31.03 2.66
291 606 6.439636 AGATGCCAACTTATTATGAGCCTA 57.560 37.500 0.00 0.00 0.00 3.93
325 640 1.906574 AGTTCTTAACGATCAGGGCCA 59.093 47.619 6.18 0.00 36.23 5.36
341 659 7.111247 TCAGGGCCAAACATATTTTAGATTG 57.889 36.000 6.18 0.00 0.00 2.67
373 691 8.734218 TTGGTTACTTTCATTGTACACACTTA 57.266 30.769 0.00 0.00 0.00 2.24
374 692 8.911918 TGGTTACTTTCATTGTACACACTTAT 57.088 30.769 0.00 0.00 0.00 1.73
453 777 7.392113 TCATAAATTAACACCAATGAACTCCGT 59.608 33.333 0.00 0.00 0.00 4.69
457 781 2.494059 ACACCAATGAACTCCGTCTTG 58.506 47.619 0.00 0.00 0.00 3.02
466 790 5.209818 TGAACTCCGTCTTGTACAAATCT 57.790 39.130 10.03 0.00 0.00 2.40
471 795 4.566004 TCCGTCTTGTACAAATCTGGAAG 58.434 43.478 10.03 5.40 0.00 3.46
489 813 7.874940 TCTGGAAGTTTATCATTTGAGTTGTG 58.125 34.615 0.00 0.00 33.76 3.33
508 832 6.724905 AGTTGTGGTCTACTTACTCCAGTTAT 59.275 38.462 0.00 0.00 0.00 1.89
557 892 3.627395 TTATTGATCCGCTTCCAGTGT 57.373 42.857 0.00 0.00 0.00 3.55
571 906 2.091885 TCCAGTGTTTTTCCTGGCTCTT 60.092 45.455 0.77 0.00 46.43 2.85
581 916 6.831664 TTTTCCTGGCTCTTAATAGATCCT 57.168 37.500 0.00 0.00 37.53 3.24
647 982 9.144747 GTTGTCTCTATATGCATTATACTGGTG 57.855 37.037 3.54 0.00 0.00 4.17
710 1047 8.734386 GGAGAAATAGTGATGACTGAAAATGTT 58.266 33.333 0.00 0.00 33.21 2.71
717 1054 8.797350 AGTGATGACTGAAAATGTTATCATCA 57.203 30.769 12.53 12.53 46.20 3.07
766 1103 5.443185 TTTGGTTCTGCTTGAAATCTCAG 57.557 39.130 0.00 0.00 36.30 3.35
781 1118 7.868775 TGAAATCTCAGACATTCAGTTTGAAG 58.131 34.615 1.39 0.00 40.42 3.02
1025 1372 3.550842 GGTGAACCAAAGAGCAATGACAC 60.551 47.826 0.00 0.00 35.64 3.67
1100 1447 3.638160 AGTGAAATGGTTCATTGCAGTGT 59.362 39.130 9.23 0.00 45.38 3.55
1134 1481 4.333926 GGTGACAATATGGTTCAAGAGAGC 59.666 45.833 0.00 0.00 0.00 4.09
1204 1551 2.735151 ACGGTAGTGAGATGATCCACA 58.265 47.619 13.79 2.26 35.84 4.17
1205 1552 2.690497 ACGGTAGTGAGATGATCCACAG 59.310 50.000 13.79 6.90 35.84 3.66
1206 1553 2.690497 CGGTAGTGAGATGATCCACAGT 59.310 50.000 13.79 8.93 35.84 3.55
1207 1554 3.883489 CGGTAGTGAGATGATCCACAGTA 59.117 47.826 13.79 8.15 35.84 2.74
1208 1555 4.338400 CGGTAGTGAGATGATCCACAGTAA 59.662 45.833 13.79 0.00 35.84 2.24
1209 1556 5.010112 CGGTAGTGAGATGATCCACAGTAAT 59.990 44.000 13.79 0.00 35.84 1.89
1210 1557 6.219473 GGTAGTGAGATGATCCACAGTAATG 58.781 44.000 13.79 0.00 35.84 1.90
1211 1558 6.040955 GGTAGTGAGATGATCCACAGTAATGA 59.959 42.308 13.79 0.00 35.84 2.57
1212 1559 6.159299 AGTGAGATGATCCACAGTAATGAG 57.841 41.667 13.79 0.00 35.84 2.90
1213 1560 5.896106 AGTGAGATGATCCACAGTAATGAGA 59.104 40.000 13.79 0.00 35.84 3.27
1214 1561 6.554228 AGTGAGATGATCCACAGTAATGAGAT 59.446 38.462 13.79 0.00 35.84 2.75
1215 1562 6.645827 GTGAGATGATCCACAGTAATGAGATG 59.354 42.308 0.00 0.00 33.72 2.90
1216 1563 6.552350 TGAGATGATCCACAGTAATGAGATGA 59.448 38.462 0.00 0.00 0.00 2.92
1217 1564 7.234988 TGAGATGATCCACAGTAATGAGATGAT 59.765 37.037 0.00 0.00 0.00 2.45
1321 1668 2.957402 TGAGATGGCCCATGGTAATC 57.043 50.000 11.73 10.36 0.00 1.75
1343 1690 2.174363 TTGGTCAGTGCTGATGTGAG 57.826 50.000 5.11 0.00 42.18 3.51
1483 1830 3.206150 ACCTTTGCATATAGTTCTGGCG 58.794 45.455 0.00 0.00 0.00 5.69
2073 2423 2.517959 CTTTTTGACTGGGGCATGAGA 58.482 47.619 0.00 0.00 0.00 3.27
2159 2509 6.825610 ACCTGAGAGATCATCTTTCCAATAC 58.174 40.000 2.79 0.00 38.84 1.89
2265 2615 2.825223 TCAGTCCATGGTGTCATCTCT 58.175 47.619 12.58 0.00 0.00 3.10
2659 3009 2.094894 GCACATGAAGATCCAGTTGTCG 59.905 50.000 0.00 0.00 0.00 4.35
2769 3119 3.840763 CGCGTTTTAAGATGAAGCTTGTC 59.159 43.478 2.10 1.47 0.00 3.18
2923 3303 6.037172 CGGGAATAATACTCAAACAACTCCAG 59.963 42.308 0.00 0.00 0.00 3.86
2944 3324 0.036164 TTCCACCGGTGATGGTCTTG 59.964 55.000 36.07 16.18 41.38 3.02
2955 3335 2.288825 TGATGGTCTTGTGGACTTCGAC 60.289 50.000 0.00 0.00 43.97 4.20
3021 3401 4.048970 ACTAGAGCAGTACCTGGAAGAA 57.951 45.455 0.00 0.00 34.98 2.52
3093 3473 2.489971 CTTAACACGCTCAGGTTTCCA 58.510 47.619 0.00 0.00 0.00 3.53
3146 3526 0.321671 ATTCCGGTGTCCACAGTGAG 59.678 55.000 0.62 0.00 0.00 3.51
3152 3532 2.421739 GTCCACAGTGAGCACGGT 59.578 61.111 0.62 0.53 40.26 4.83
3156 3536 0.033504 CCACAGTGAGCACGGTTAGT 59.966 55.000 0.62 0.00 37.63 2.24
3225 3605 1.079503 GCTCGCTTCGTCCTGAAATT 58.920 50.000 0.00 0.00 35.79 1.82
3290 3670 3.108289 CGCCTCGCAGACACACAG 61.108 66.667 0.00 0.00 0.00 3.66
3292 3672 1.595382 GCCTCGCAGACACACAGTT 60.595 57.895 0.00 0.00 0.00 3.16
3293 3673 1.835483 GCCTCGCAGACACACAGTTG 61.835 60.000 0.00 0.00 0.00 3.16
3294 3674 0.530650 CCTCGCAGACACACAGTTGT 60.531 55.000 0.00 0.00 35.84 3.32
3308 3688 0.883833 AGTTGTGCAATGCAGTAGGC 59.116 50.000 8.73 0.00 40.08 3.93
3309 3689 0.883833 GTTGTGCAATGCAGTAGGCT 59.116 50.000 8.73 0.00 45.15 4.58
3344 3724 6.535963 TGCATTCCTGATATGATCTCGTAT 57.464 37.500 0.00 0.00 0.00 3.06
3378 3759 3.149196 TCAGGGAGAGTTTGTGAATTGC 58.851 45.455 0.00 0.00 0.00 3.56
3389 3770 1.702401 TGTGAATTGCCTGGTGGTCTA 59.298 47.619 0.00 0.00 35.27 2.59
3400 3781 3.629398 CCTGGTGGTCTATTTCAGCAATC 59.371 47.826 0.00 0.00 40.24 2.67
3402 3783 2.952310 GGTGGTCTATTTCAGCAATCCC 59.048 50.000 0.00 0.00 0.00 3.85
3403 3784 2.952310 GTGGTCTATTTCAGCAATCCCC 59.048 50.000 0.00 0.00 0.00 4.81
3405 3786 4.044308 TGGTCTATTTCAGCAATCCCCTA 58.956 43.478 0.00 0.00 0.00 3.53
3406 3787 4.103153 TGGTCTATTTCAGCAATCCCCTAG 59.897 45.833 0.00 0.00 0.00 3.02
3415 3797 3.509575 CAGCAATCCCCTAGCTAGTAGAG 59.490 52.174 19.31 4.00 36.73 2.43
3428 3810 0.753262 AGTAGAGCATAACCAGCGGG 59.247 55.000 0.00 0.00 41.29 6.13
3439 3821 3.257935 CCAGCGGGGTTGTTTATGA 57.742 52.632 0.00 0.00 0.00 2.15
3440 3822 1.540267 CCAGCGGGGTTGTTTATGAA 58.460 50.000 0.00 0.00 0.00 2.57
3478 3861 7.840342 TGTTTTCATGTGCTTTACAACATTT 57.160 28.000 0.00 0.00 43.77 2.32
3511 3894 9.816354 ACATGGTTATTTTTAGTGGATTTATGC 57.184 29.630 0.00 0.00 0.00 3.14
3512 3895 9.260002 CATGGTTATTTTTAGTGGATTTATGCC 57.740 33.333 0.00 0.00 0.00 4.40
3521 3909 4.347607 AGTGGATTTATGCCTTTGCTCTT 58.652 39.130 0.00 0.00 38.71 2.85
3598 3986 3.954904 TGCTCTACCTCTCTACAATGACC 59.045 47.826 0.00 0.00 0.00 4.02
3599 3987 3.003897 GCTCTACCTCTCTACAATGACCG 59.996 52.174 0.00 0.00 0.00 4.79
3600 3988 3.552875 TCTACCTCTCTACAATGACCGG 58.447 50.000 0.00 0.00 0.00 5.28
3601 3989 2.233305 ACCTCTCTACAATGACCGGT 57.767 50.000 6.92 6.92 0.00 5.28
3602 3990 3.377253 ACCTCTCTACAATGACCGGTA 57.623 47.619 7.34 0.00 0.00 4.02
3603 3991 3.912248 ACCTCTCTACAATGACCGGTAT 58.088 45.455 7.34 0.00 0.00 2.73
3604 3992 5.057843 ACCTCTCTACAATGACCGGTATA 57.942 43.478 7.34 0.00 0.00 1.47
3605 3993 5.642165 ACCTCTCTACAATGACCGGTATAT 58.358 41.667 7.34 1.71 0.00 0.86
3606 3994 6.787170 ACCTCTCTACAATGACCGGTATATA 58.213 40.000 7.34 0.00 0.00 0.86
3607 3995 6.658391 ACCTCTCTACAATGACCGGTATATAC 59.342 42.308 7.34 4.14 0.00 1.47
3633 4021 8.956426 CAGGCTTATTATTTTCTTGTGGTTCTA 58.044 33.333 0.00 0.00 0.00 2.10
3742 4130 6.942576 GCTTCAGTTATGTTGGTGGGATATAT 59.057 38.462 0.00 0.00 0.00 0.86
3743 4131 7.094634 GCTTCAGTTATGTTGGTGGGATATATG 60.095 40.741 0.00 0.00 0.00 1.78
3765 4153 4.277921 TGCATGCATATATTTCGGCTTCAA 59.722 37.500 18.46 0.00 0.00 2.69
3778 4166 4.839121 TCGGCTTCAATTATGTTAGTGGT 58.161 39.130 0.00 0.00 0.00 4.16
3783 4171 8.443160 CGGCTTCAATTATGTTAGTGGTATATG 58.557 37.037 0.00 0.00 0.00 1.78
3784 4172 8.730680 GGCTTCAATTATGTTAGTGGTATATGG 58.269 37.037 0.00 0.00 0.00 2.74
3785 4173 9.284968 GCTTCAATTATGTTAGTGGTATATGGT 57.715 33.333 0.00 0.00 0.00 3.55
3788 4176 9.917129 TCAATTATGTTAGTGGTATATGGTACG 57.083 33.333 0.00 0.00 0.00 3.67
3789 4177 9.701098 CAATTATGTTAGTGGTATATGGTACGT 57.299 33.333 0.00 0.00 0.00 3.57
3792 4180 6.882610 TGTTAGTGGTATATGGTACGTAGG 57.117 41.667 0.00 0.00 0.00 3.18
3793 4181 6.364701 TGTTAGTGGTATATGGTACGTAGGT 58.635 40.000 0.00 0.00 0.00 3.08
3795 4183 3.571401 AGTGGTATATGGTACGTAGGTGC 59.429 47.826 0.00 0.00 0.00 5.01
3796 4184 3.571401 GTGGTATATGGTACGTAGGTGCT 59.429 47.826 0.00 0.00 0.00 4.40
3797 4185 3.822735 TGGTATATGGTACGTAGGTGCTC 59.177 47.826 0.00 0.00 0.00 4.26
3800 4188 5.047519 GGTATATGGTACGTAGGTGCTCATT 60.048 44.000 0.00 5.05 0.00 2.57
3802 4190 6.659745 ATATGGTACGTAGGTGCTCATTAA 57.340 37.500 0.00 0.00 0.00 1.40
3803 4191 5.546621 ATGGTACGTAGGTGCTCATTAAT 57.453 39.130 0.00 0.00 0.00 1.40
3804 4192 4.940463 TGGTACGTAGGTGCTCATTAATC 58.060 43.478 0.00 0.00 0.00 1.75
3805 4193 3.979495 GGTACGTAGGTGCTCATTAATCG 59.021 47.826 0.00 0.00 0.00 3.34
3806 4194 3.795623 ACGTAGGTGCTCATTAATCGT 57.204 42.857 0.00 0.00 0.00 3.73
3807 4195 4.906065 ACGTAGGTGCTCATTAATCGTA 57.094 40.909 0.00 0.00 0.00 3.43
3808 4196 5.252969 ACGTAGGTGCTCATTAATCGTAA 57.747 39.130 0.00 0.00 0.00 3.18
3809 4197 5.839621 ACGTAGGTGCTCATTAATCGTAAT 58.160 37.500 0.00 0.00 0.00 1.89
3810 4198 6.973843 ACGTAGGTGCTCATTAATCGTAATA 58.026 36.000 0.00 0.00 0.00 0.98
3811 4199 7.428020 ACGTAGGTGCTCATTAATCGTAATAA 58.572 34.615 0.00 0.00 0.00 1.40
3812 4200 8.086522 ACGTAGGTGCTCATTAATCGTAATAAT 58.913 33.333 0.00 0.00 0.00 1.28
3813 4201 9.563898 CGTAGGTGCTCATTAATCGTAATAATA 57.436 33.333 0.00 0.00 0.00 0.98
3855 4243 6.933514 AATATCAAGTTGGTTGGGTTGAAT 57.066 33.333 2.34 0.00 36.71 2.57
3858 4246 2.871633 CAAGTTGGTTGGGTTGAATTGC 59.128 45.455 0.00 0.00 31.82 3.56
3859 4247 2.397597 AGTTGGTTGGGTTGAATTGCT 58.602 42.857 0.00 0.00 0.00 3.91
3861 4249 0.392336 TGGTTGGGTTGAATTGCTGC 59.608 50.000 0.00 0.00 0.00 5.25
3862 4250 0.392336 GGTTGGGTTGAATTGCTGCA 59.608 50.000 0.00 0.00 0.00 4.41
3863 4251 1.202627 GGTTGGGTTGAATTGCTGCAA 60.203 47.619 18.43 18.43 0.00 4.08
3864 4252 2.550639 GGTTGGGTTGAATTGCTGCAAT 60.551 45.455 21.48 21.48 35.39 3.56
3909 4301 5.389859 TCGTAATCTGTTCGGGTTTTCTA 57.610 39.130 0.00 0.00 0.00 2.10
3910 4302 5.163513 TCGTAATCTGTTCGGGTTTTCTAC 58.836 41.667 0.00 0.00 0.00 2.59
3911 4303 5.047802 TCGTAATCTGTTCGGGTTTTCTACT 60.048 40.000 0.00 0.00 0.00 2.57
3915 4307 4.549458 TCTGTTCGGGTTTTCTACTAACG 58.451 43.478 0.00 0.00 0.00 3.18
3917 4309 3.059166 GTTCGGGTTTTCTACTAACGCA 58.941 45.455 0.00 0.00 38.06 5.24
3918 4310 3.598019 TCGGGTTTTCTACTAACGCAT 57.402 42.857 0.00 0.00 38.06 4.73
3919 4311 3.255725 TCGGGTTTTCTACTAACGCATG 58.744 45.455 0.00 0.00 38.06 4.06
3920 4312 2.997986 CGGGTTTTCTACTAACGCATGT 59.002 45.455 0.00 0.00 38.06 3.21
3921 4313 3.061697 CGGGTTTTCTACTAACGCATGTC 59.938 47.826 0.00 0.00 38.06 3.06
3922 4314 4.251268 GGGTTTTCTACTAACGCATGTCT 58.749 43.478 0.00 0.00 38.07 3.41
3943 4335 6.318648 TGTCTTTTGTAATCTGCTCTGTTGTT 59.681 34.615 0.00 0.00 0.00 2.83
3997 4389 6.896860 TGGGTGAATTTATTTCCAGTCATCAT 59.103 34.615 0.00 0.00 33.04 2.45
3998 4390 7.068593 TGGGTGAATTTATTTCCAGTCATCATC 59.931 37.037 0.00 0.00 33.04 2.92
3999 4391 7.068593 GGGTGAATTTATTTCCAGTCATCATCA 59.931 37.037 0.00 0.00 33.04 3.07
4000 4392 8.469200 GGTGAATTTATTTCCAGTCATCATCAA 58.531 33.333 0.00 0.00 33.04 2.57
4001 4393 9.859427 GTGAATTTATTTCCAGTCATCATCAAA 57.141 29.630 0.00 0.00 33.04 2.69
4034 4426 9.793259 AAAAGATTAACCTCTATCAGTTTGTCA 57.207 29.630 0.00 0.00 0.00 3.58
4035 4427 9.793259 AAAGATTAACCTCTATCAGTTTGTCAA 57.207 29.630 0.00 0.00 0.00 3.18
4036 4428 9.793259 AAGATTAACCTCTATCAGTTTGTCAAA 57.207 29.630 0.00 0.00 0.00 2.69
4037 4429 9.965902 AGATTAACCTCTATCAGTTTGTCAAAT 57.034 29.630 0.40 0.00 0.00 2.32
4041 4433 8.779354 AACCTCTATCAGTTTGTCAAATACTC 57.221 34.615 0.40 0.00 0.00 2.59
4042 4434 8.140112 ACCTCTATCAGTTTGTCAAATACTCT 57.860 34.615 0.40 0.00 0.00 3.24
4043 4435 8.037758 ACCTCTATCAGTTTGTCAAATACTCTG 58.962 37.037 0.40 4.51 0.00 3.35
4044 4436 7.493971 CCTCTATCAGTTTGTCAAATACTCTGG 59.506 40.741 11.61 2.17 0.00 3.86
4045 4437 7.907389 TCTATCAGTTTGTCAAATACTCTGGT 58.093 34.615 11.61 8.49 0.00 4.00
4046 4438 9.031537 TCTATCAGTTTGTCAAATACTCTGGTA 57.968 33.333 11.61 9.03 0.00 3.25
4047 4439 9.307121 CTATCAGTTTGTCAAATACTCTGGTAG 57.693 37.037 14.65 14.65 33.78 3.18
4048 4440 7.297936 TCAGTTTGTCAAATACTCTGGTAGA 57.702 36.000 11.61 0.00 0.00 2.59
4049 4441 7.907389 TCAGTTTGTCAAATACTCTGGTAGAT 58.093 34.615 11.61 0.00 0.00 1.98
4050 4442 9.031537 TCAGTTTGTCAAATACTCTGGTAGATA 57.968 33.333 11.61 0.00 0.00 1.98
4051 4443 9.653287 CAGTTTGTCAAATACTCTGGTAGATAA 57.347 33.333 0.40 0.00 0.00 1.75
4078 4470 9.855021 AAAACATCACAATATAGTAACCAAAGC 57.145 29.630 0.00 0.00 0.00 3.51
4079 4471 8.574251 AACATCACAATATAGTAACCAAAGCA 57.426 30.769 0.00 0.00 0.00 3.91
4080 4472 8.213518 ACATCACAATATAGTAACCAAAGCAG 57.786 34.615 0.00 0.00 0.00 4.24
4081 4473 7.829211 ACATCACAATATAGTAACCAAAGCAGT 59.171 33.333 0.00 0.00 0.00 4.40
4082 4474 7.843490 TCACAATATAGTAACCAAAGCAGTC 57.157 36.000 0.00 0.00 0.00 3.51
4083 4475 7.390823 TCACAATATAGTAACCAAAGCAGTCA 58.609 34.615 0.00 0.00 0.00 3.41
4084 4476 7.549134 TCACAATATAGTAACCAAAGCAGTCAG 59.451 37.037 0.00 0.00 0.00 3.51
4085 4477 6.316390 ACAATATAGTAACCAAAGCAGTCAGC 59.684 38.462 0.00 0.00 46.19 4.26
4099 4491 5.772825 GCAGTCAGCATATCCCAAATAAA 57.227 39.130 0.00 0.00 44.79 1.40
4100 4492 6.147864 GCAGTCAGCATATCCCAAATAAAA 57.852 37.500 0.00 0.00 44.79 1.52
4101 4493 5.979517 GCAGTCAGCATATCCCAAATAAAAC 59.020 40.000 0.00 0.00 44.79 2.43
4102 4494 6.183360 GCAGTCAGCATATCCCAAATAAAACT 60.183 38.462 0.00 0.00 44.79 2.66
4103 4495 7.198390 CAGTCAGCATATCCCAAATAAAACTG 58.802 38.462 0.00 0.00 0.00 3.16
4104 4496 7.067372 CAGTCAGCATATCCCAAATAAAACTGA 59.933 37.037 0.00 0.00 31.83 3.41
4105 4497 7.067494 AGTCAGCATATCCCAAATAAAACTGAC 59.933 37.037 0.00 0.00 46.59 3.51
4106 4498 6.038161 TCAGCATATCCCAAATAAAACTGACG 59.962 38.462 0.00 0.00 0.00 4.35
4107 4499 5.885912 AGCATATCCCAAATAAAACTGACGT 59.114 36.000 0.00 0.00 0.00 4.34
4108 4500 5.971202 GCATATCCCAAATAAAACTGACGTG 59.029 40.000 0.00 0.00 0.00 4.49
4109 4501 3.907894 TCCCAAATAAAACTGACGTGC 57.092 42.857 0.00 0.00 0.00 5.34
4110 4502 3.215151 TCCCAAATAAAACTGACGTGCA 58.785 40.909 0.00 0.00 0.00 4.57
4111 4503 3.003897 TCCCAAATAAAACTGACGTGCAC 59.996 43.478 6.82 6.82 0.00 4.57
4112 4504 3.004315 CCCAAATAAAACTGACGTGCACT 59.996 43.478 16.19 1.46 0.00 4.40
4113 4505 3.974401 CCAAATAAAACTGACGTGCACTG 59.026 43.478 16.19 11.05 0.00 3.66
4114 4506 4.497340 CCAAATAAAACTGACGTGCACTGT 60.497 41.667 16.19 14.36 0.00 3.55
4115 4507 5.277586 CCAAATAAAACTGACGTGCACTGTA 60.278 40.000 16.19 0.00 0.00 2.74
4116 4508 4.985044 ATAAAACTGACGTGCACTGTAC 57.015 40.909 16.19 9.12 0.00 2.90
4117 4509 2.596904 AAACTGACGTGCACTGTACT 57.403 45.000 16.19 0.00 0.00 2.73
4118 4510 3.720949 AAACTGACGTGCACTGTACTA 57.279 42.857 16.19 4.46 0.00 1.82
4119 4511 2.991434 ACTGACGTGCACTGTACTAG 57.009 50.000 16.19 14.29 0.00 2.57
4120 4512 1.068472 ACTGACGTGCACTGTACTAGC 60.068 52.381 16.19 3.35 0.00 3.42
4121 4513 0.242825 TGACGTGCACTGTACTAGCC 59.757 55.000 16.19 2.69 0.00 3.93
4122 4514 0.458025 GACGTGCACTGTACTAGCCC 60.458 60.000 16.19 0.00 0.00 5.19
4123 4515 1.183030 ACGTGCACTGTACTAGCCCA 61.183 55.000 16.19 0.00 0.00 5.36
4124 4516 0.037697 CGTGCACTGTACTAGCCCAA 60.038 55.000 16.19 0.00 0.00 4.12
4125 4517 1.606994 CGTGCACTGTACTAGCCCAAA 60.607 52.381 16.19 0.00 0.00 3.28
4126 4518 2.711542 GTGCACTGTACTAGCCCAAAT 58.288 47.619 10.32 0.00 0.00 2.32
4127 4519 2.678336 GTGCACTGTACTAGCCCAAATC 59.322 50.000 10.32 0.00 0.00 2.17
4128 4520 2.571653 TGCACTGTACTAGCCCAAATCT 59.428 45.455 0.00 0.00 0.00 2.40
4129 4521 3.009033 TGCACTGTACTAGCCCAAATCTT 59.991 43.478 0.00 0.00 0.00 2.40
4130 4522 3.375299 GCACTGTACTAGCCCAAATCTTG 59.625 47.826 0.00 0.00 0.00 3.02
4154 4546 3.338818 CACCCGATGCATTATTGTGTC 57.661 47.619 0.00 0.00 0.00 3.67
4155 4547 2.682352 CACCCGATGCATTATTGTGTCA 59.318 45.455 0.00 0.00 0.00 3.58
4156 4548 3.316029 CACCCGATGCATTATTGTGTCAT 59.684 43.478 0.00 0.00 0.00 3.06
4157 4549 3.316029 ACCCGATGCATTATTGTGTCATG 59.684 43.478 0.00 0.00 0.00 3.07
4158 4550 3.302555 CCGATGCATTATTGTGTCATGC 58.697 45.455 0.00 0.00 43.13 4.06
4159 4551 3.004002 CCGATGCATTATTGTGTCATGCT 59.996 43.478 0.00 0.00 43.22 3.79
4160 4552 4.498513 CCGATGCATTATTGTGTCATGCTT 60.499 41.667 0.00 0.00 43.22 3.91
4161 4553 5.277925 CCGATGCATTATTGTGTCATGCTTA 60.278 40.000 0.00 0.00 43.22 3.09
4162 4554 6.376177 CGATGCATTATTGTGTCATGCTTAT 58.624 36.000 0.00 0.00 43.22 1.73
4163 4555 7.361116 CCGATGCATTATTGTGTCATGCTTATA 60.361 37.037 0.00 0.00 43.22 0.98
4164 4556 7.479603 CGATGCATTATTGTGTCATGCTTATAC 59.520 37.037 0.00 0.00 43.22 1.47
4165 4557 7.565323 TGCATTATTGTGTCATGCTTATACA 57.435 32.000 5.07 0.00 43.22 2.29
4166 4558 7.641760 TGCATTATTGTGTCATGCTTATACAG 58.358 34.615 5.07 0.00 43.22 2.74
4186 4578 4.868195 GCGAAATGCCTTCACCAC 57.132 55.556 0.00 0.00 37.76 4.16
4187 4579 1.212751 GCGAAATGCCTTCACCACC 59.787 57.895 0.00 0.00 37.76 4.61
4188 4580 1.523154 GCGAAATGCCTTCACCACCA 61.523 55.000 0.00 0.00 37.76 4.17
4189 4581 0.958091 CGAAATGCCTTCACCACCAA 59.042 50.000 0.00 0.00 33.17 3.67
4190 4582 1.339610 CGAAATGCCTTCACCACCAAA 59.660 47.619 0.00 0.00 33.17 3.28
4191 4583 2.029110 CGAAATGCCTTCACCACCAAAT 60.029 45.455 0.00 0.00 33.17 2.32
4192 4584 3.192422 CGAAATGCCTTCACCACCAAATA 59.808 43.478 0.00 0.00 33.17 1.40
4193 4585 4.494484 GAAATGCCTTCACCACCAAATAC 58.506 43.478 0.00 0.00 33.86 1.89
4194 4586 1.917872 TGCCTTCACCACCAAATACC 58.082 50.000 0.00 0.00 0.00 2.73
4195 4587 0.808755 GCCTTCACCACCAAATACCG 59.191 55.000 0.00 0.00 0.00 4.02
4196 4588 1.612199 GCCTTCACCACCAAATACCGA 60.612 52.381 0.00 0.00 0.00 4.69
4197 4589 2.944094 GCCTTCACCACCAAATACCGAT 60.944 50.000 0.00 0.00 0.00 4.18
4198 4590 2.682856 CCTTCACCACCAAATACCGATG 59.317 50.000 0.00 0.00 0.00 3.84
4199 4591 3.605634 CTTCACCACCAAATACCGATGA 58.394 45.455 0.00 0.00 0.00 2.92
4200 4592 3.924114 TCACCACCAAATACCGATGAT 57.076 42.857 0.00 0.00 0.00 2.45
4201 4593 3.540617 TCACCACCAAATACCGATGATG 58.459 45.455 0.00 0.00 0.00 3.07
4202 4594 3.198853 TCACCACCAAATACCGATGATGA 59.801 43.478 0.00 0.00 0.00 2.92
4203 4595 3.944650 CACCACCAAATACCGATGATGAA 59.055 43.478 0.00 0.00 0.00 2.57
4204 4596 4.397730 CACCACCAAATACCGATGATGAAA 59.602 41.667 0.00 0.00 0.00 2.69
4205 4597 4.640201 ACCACCAAATACCGATGATGAAAG 59.360 41.667 0.00 0.00 0.00 2.62
4206 4598 4.036734 CCACCAAATACCGATGATGAAAGG 59.963 45.833 0.00 0.00 0.00 3.11
4207 4599 3.632145 ACCAAATACCGATGATGAAAGGC 59.368 43.478 0.00 0.00 0.00 4.35
4208 4600 3.004734 CCAAATACCGATGATGAAAGGCC 59.995 47.826 0.00 0.00 0.00 5.19
4209 4601 3.864789 AATACCGATGATGAAAGGCCT 57.135 42.857 0.00 0.00 0.00 5.19
4210 4602 2.910688 TACCGATGATGAAAGGCCTC 57.089 50.000 5.23 0.00 0.00 4.70
4211 4603 0.181350 ACCGATGATGAAAGGCCTCC 59.819 55.000 5.23 1.05 0.00 4.30
4212 4604 0.536006 CCGATGATGAAAGGCCTCCC 60.536 60.000 5.23 0.60 0.00 4.30
4213 4605 0.882042 CGATGATGAAAGGCCTCCCG 60.882 60.000 5.23 0.00 35.76 5.14
4214 4606 0.181350 GATGATGAAAGGCCTCCCGT 59.819 55.000 5.23 1.46 35.76 5.28
4215 4607 0.625849 ATGATGAAAGGCCTCCCGTT 59.374 50.000 5.23 0.00 35.41 4.44
4216 4608 0.035439 TGATGAAAGGCCTCCCGTTC 60.035 55.000 5.23 6.87 46.06 3.95
4217 4609 0.253327 GATGAAAGGCCTCCCGTTCT 59.747 55.000 5.23 0.00 46.04 3.01
4218 4610 0.698818 ATGAAAGGCCTCCCGTTCTT 59.301 50.000 5.23 1.11 46.04 2.52
4219 4611 0.476771 TGAAAGGCCTCCCGTTCTTT 59.523 50.000 5.23 0.00 46.04 2.52
4220 4612 0.881796 GAAAGGCCTCCCGTTCTTTG 59.118 55.000 5.23 0.00 43.59 2.77
4221 4613 1.179174 AAAGGCCTCCCGTTCTTTGC 61.179 55.000 5.23 0.00 35.76 3.68
4222 4614 3.431725 GGCCTCCCGTTCTTTGCG 61.432 66.667 0.00 0.00 0.00 4.85
4223 4615 2.358247 GCCTCCCGTTCTTTGCGA 60.358 61.111 0.00 0.00 0.00 5.10
4224 4616 1.745489 GCCTCCCGTTCTTTGCGAT 60.745 57.895 0.00 0.00 0.00 4.58
4225 4617 1.706287 GCCTCCCGTTCTTTGCGATC 61.706 60.000 0.00 0.00 0.00 3.69
4226 4618 1.090052 CCTCCCGTTCTTTGCGATCC 61.090 60.000 0.00 0.00 0.00 3.36
4227 4619 0.108138 CTCCCGTTCTTTGCGATCCT 60.108 55.000 0.00 0.00 0.00 3.24
4228 4620 0.323629 TCCCGTTCTTTGCGATCCTT 59.676 50.000 0.00 0.00 0.00 3.36
4229 4621 1.165270 CCCGTTCTTTGCGATCCTTT 58.835 50.000 0.00 0.00 0.00 3.11
4230 4622 1.539827 CCCGTTCTTTGCGATCCTTTT 59.460 47.619 0.00 0.00 0.00 2.27
4231 4623 2.030274 CCCGTTCTTTGCGATCCTTTTT 60.030 45.455 0.00 0.00 0.00 1.94
4232 4624 3.234386 CCGTTCTTTGCGATCCTTTTTC 58.766 45.455 0.00 0.00 0.00 2.29
4233 4625 3.234386 CGTTCTTTGCGATCCTTTTTCC 58.766 45.455 0.00 0.00 0.00 3.13
4234 4626 3.058224 CGTTCTTTGCGATCCTTTTTCCT 60.058 43.478 0.00 0.00 0.00 3.36
4235 4627 4.556699 CGTTCTTTGCGATCCTTTTTCCTT 60.557 41.667 0.00 0.00 0.00 3.36
4236 4628 5.289595 GTTCTTTGCGATCCTTTTTCCTTT 58.710 37.500 0.00 0.00 0.00 3.11
4237 4629 5.529581 TCTTTGCGATCCTTTTTCCTTTT 57.470 34.783 0.00 0.00 0.00 2.27
4238 4630 5.912892 TCTTTGCGATCCTTTTTCCTTTTT 58.087 33.333 0.00 0.00 0.00 1.94
4294 4686 5.511234 ACGGAGTACACTTCCATACATAC 57.489 43.478 0.00 0.00 41.94 2.39
4295 4687 4.951715 ACGGAGTACACTTCCATACATACA 59.048 41.667 0.00 0.00 41.94 2.29
4296 4688 5.597182 ACGGAGTACACTTCCATACATACAT 59.403 40.000 0.00 0.00 41.94 2.29
4297 4689 5.920840 CGGAGTACACTTCCATACATACATG 59.079 44.000 0.00 0.00 0.00 3.21
4298 4690 6.223852 GGAGTACACTTCCATACATACATGG 58.776 44.000 0.00 0.00 45.93 3.66
4299 4691 6.174720 AGTACACTTCCATACATACATGGG 57.825 41.667 0.00 0.00 44.85 4.00
4300 4692 4.437682 ACACTTCCATACATACATGGGG 57.562 45.455 0.00 0.00 44.85 4.96
4301 4693 3.149196 CACTTCCATACATACATGGGGC 58.851 50.000 0.00 0.00 44.85 5.80
4302 4694 2.782925 ACTTCCATACATACATGGGGCA 59.217 45.455 0.00 0.00 44.85 5.36
4303 4695 3.204158 ACTTCCATACATACATGGGGCAA 59.796 43.478 0.00 0.00 44.85 4.52
4304 4696 3.222173 TCCATACATACATGGGGCAAC 57.778 47.619 0.00 0.00 44.85 4.17
4305 4697 2.782925 TCCATACATACATGGGGCAACT 59.217 45.455 0.00 0.00 44.85 3.16
4306 4698 3.977326 TCCATACATACATGGGGCAACTA 59.023 43.478 0.00 0.00 44.85 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.041982 ACCCCCAACAAAACACCAGT 59.958 50.000 0.00 0.00 0.00 4.00
19 20 6.796785 TCTGTCCATACATCAGAATCAGAA 57.203 37.500 0.00 0.00 35.65 3.02
32 33 3.990469 CCGTATCAAGCATCTGTCCATAC 59.010 47.826 0.00 0.00 0.00 2.39
65 66 3.821841 CTTGGATAAACTTGTGCGGTTC 58.178 45.455 0.00 0.00 0.00 3.62
99 101 6.393720 AAAACTTCAAATTCATGCGTATGC 57.606 33.333 8.81 0.00 43.20 3.14
137 139 4.597507 TGAGTTGACTGGTAAGAAGGGATT 59.402 41.667 0.00 0.00 0.00 3.01
154 156 7.425577 TGAATGTGAACATCTACTTGAGTTG 57.574 36.000 0.00 0.00 35.10 3.16
155 157 9.896645 ATATGAATGTGAACATCTACTTGAGTT 57.103 29.630 0.00 0.00 35.10 3.01
173 175 6.377996 TCAGTTTTCCTGGTTCCATATGAATG 59.622 38.462 3.65 0.00 41.83 2.67
179 181 3.330701 AGCTCAGTTTTCCTGGTTCCATA 59.669 43.478 0.00 0.00 41.83 2.74
181 183 1.494721 AGCTCAGTTTTCCTGGTTCCA 59.505 47.619 0.00 0.00 41.83 3.53
197 199 3.526931 TGAATACCAGTACAGCAGCTC 57.473 47.619 0.00 0.00 0.00 4.09
199 201 3.861840 TCTTGAATACCAGTACAGCAGC 58.138 45.455 0.00 0.00 0.00 5.25
200 202 5.349817 CAGTTCTTGAATACCAGTACAGCAG 59.650 44.000 0.00 0.00 0.00 4.24
210 212 4.083271 GCCACAACTCAGTTCTTGAATACC 60.083 45.833 0.00 0.00 34.81 2.73
211 213 4.757149 AGCCACAACTCAGTTCTTGAATAC 59.243 41.667 0.00 0.00 34.81 1.89
251 253 8.914011 GTTGGCATCTTTATTCCCTATTTAACT 58.086 33.333 0.00 0.00 0.00 2.24
312 627 2.799126 TATGTTTGGCCCTGATCGTT 57.201 45.000 0.00 0.00 0.00 3.85
314 629 4.654091 AAAATATGTTTGGCCCTGATCG 57.346 40.909 0.00 0.00 0.00 3.69
318 633 7.111247 TCAATCTAAAATATGTTTGGCCCTG 57.889 36.000 0.00 0.00 0.00 4.45
319 634 7.919385 ATCAATCTAAAATATGTTTGGCCCT 57.081 32.000 0.00 0.00 0.00 5.19
373 691 9.587772 GGTGATACGCAGAATTTATATGTCTAT 57.412 33.333 0.00 0.00 0.00 1.98
374 692 8.803235 AGGTGATACGCAGAATTTATATGTCTA 58.197 33.333 0.00 0.00 0.00 2.59
388 706 5.833082 ACACTAGATAAAGGTGATACGCAG 58.167 41.667 0.00 0.00 35.28 5.18
397 720 9.911788 ATGATCAATCAAACACTAGATAAAGGT 57.088 29.630 0.00 0.00 40.69 3.50
426 749 8.240682 CGGAGTTCATTGGTGTTAATTTATGAA 58.759 33.333 0.00 0.00 31.63 2.57
427 750 7.392113 ACGGAGTTCATTGGTGTTAATTTATGA 59.608 33.333 0.00 0.00 37.78 2.15
428 751 7.535139 ACGGAGTTCATTGGTGTTAATTTATG 58.465 34.615 0.00 0.00 37.78 1.90
429 752 7.696992 ACGGAGTTCATTGGTGTTAATTTAT 57.303 32.000 0.00 0.00 37.78 1.40
449 772 4.039973 ACTTCCAGATTTGTACAAGACGGA 59.960 41.667 8.56 10.53 0.00 4.69
453 777 9.739276 ATGATAAACTTCCAGATTTGTACAAGA 57.261 29.630 8.56 0.00 0.00 3.02
466 790 6.549364 ACCACAACTCAAATGATAAACTTCCA 59.451 34.615 0.00 0.00 0.00 3.53
471 795 8.324163 AGTAGACCACAACTCAAATGATAAAC 57.676 34.615 0.00 0.00 0.00 2.01
481 805 4.476297 TGGAGTAAGTAGACCACAACTCA 58.524 43.478 8.17 0.00 41.10 3.41
489 813 7.894753 AAGGTATAACTGGAGTAAGTAGACC 57.105 40.000 0.00 0.00 31.27 3.85
522 857 9.581099 GCGGATCAATAAATTTTCTAAAGGAAA 57.419 29.630 0.00 0.00 41.58 3.13
532 867 6.071391 ACACTGGAAGCGGATCAATAAATTTT 60.071 34.615 0.00 0.00 37.60 1.82
546 881 2.405892 CAGGAAAAACACTGGAAGCG 57.594 50.000 0.00 0.00 37.60 4.68
647 982 8.070769 GTCATTTTCTAGAAAAGAACTGTGACC 58.929 37.037 29.28 19.71 44.02 4.02
742 1079 6.266103 TCTGAGATTTCAAGCAGAACCAAAAT 59.734 34.615 0.00 0.00 35.56 1.82
746 1083 4.067896 GTCTGAGATTTCAAGCAGAACCA 58.932 43.478 0.00 0.00 38.92 3.67
747 1084 4.067896 TGTCTGAGATTTCAAGCAGAACC 58.932 43.478 0.00 0.00 38.92 3.62
758 1095 6.263842 TGCTTCAAACTGAATGTCTGAGATTT 59.736 34.615 1.28 0.00 35.59 2.17
766 1103 6.545504 TTACTCTGCTTCAAACTGAATGTC 57.454 37.500 0.00 0.00 35.59 3.06
781 1118 4.445385 CCAGTGCAACAAAAATTACTCTGC 59.555 41.667 0.00 0.00 41.43 4.26
818 1155 8.697292 ACAGACTAAGGGATCTTACATAACTTC 58.303 37.037 0.00 0.00 34.59 3.01
942 1289 6.978659 CCTGACAATTTGGAATGATTGATCAG 59.021 38.462 0.78 14.56 40.64 2.90
1043 1390 4.533707 TCTTGTTCCTGACAATCATCTCCT 59.466 41.667 0.00 0.00 46.58 3.69
1100 1447 2.812836 ATTGTCACCATGGAGCATCA 57.187 45.000 21.47 8.00 36.25 3.07
1134 1481 1.947456 TCGTCACCATGGACTATCTCG 59.053 52.381 21.47 12.38 35.63 4.04
1200 1547 5.699915 GTGGATCATCATCTCATTACTGTGG 59.300 44.000 0.00 0.00 0.00 4.17
1201 1548 5.404667 CGTGGATCATCATCTCATTACTGTG 59.595 44.000 0.00 0.00 0.00 3.66
1202 1549 5.510349 CCGTGGATCATCATCTCATTACTGT 60.510 44.000 0.00 0.00 0.00 3.55
1203 1550 4.928020 CCGTGGATCATCATCTCATTACTG 59.072 45.833 0.00 0.00 0.00 2.74
1204 1551 4.590647 ACCGTGGATCATCATCTCATTACT 59.409 41.667 0.00 0.00 0.00 2.24
1205 1552 4.887748 ACCGTGGATCATCATCTCATTAC 58.112 43.478 0.00 0.00 0.00 1.89
1206 1553 6.664428 TTACCGTGGATCATCATCTCATTA 57.336 37.500 0.00 0.00 0.00 1.90
1207 1554 5.551305 TTACCGTGGATCATCATCTCATT 57.449 39.130 0.00 0.00 0.00 2.57
1208 1555 5.246883 TCATTACCGTGGATCATCATCTCAT 59.753 40.000 0.00 0.00 0.00 2.90
1209 1556 4.588528 TCATTACCGTGGATCATCATCTCA 59.411 41.667 0.00 0.00 0.00 3.27
1210 1557 5.047731 TCTCATTACCGTGGATCATCATCTC 60.048 44.000 0.00 0.00 0.00 2.75
1211 1558 4.835056 TCTCATTACCGTGGATCATCATCT 59.165 41.667 0.00 0.00 0.00 2.90
1212 1559 5.139435 TCTCATTACCGTGGATCATCATC 57.861 43.478 0.00 0.00 0.00 2.92
1213 1560 5.485620 CATCTCATTACCGTGGATCATCAT 58.514 41.667 0.00 0.00 0.00 2.45
1214 1561 4.262592 CCATCTCATTACCGTGGATCATCA 60.263 45.833 0.00 0.00 31.59 3.07
1215 1562 4.248859 CCATCTCATTACCGTGGATCATC 58.751 47.826 0.00 0.00 31.59 2.92
1216 1563 3.648067 ACCATCTCATTACCGTGGATCAT 59.352 43.478 0.00 0.00 34.13 2.45
1217 1564 3.038280 ACCATCTCATTACCGTGGATCA 58.962 45.455 0.00 0.00 34.13 2.92
1321 1668 1.471287 CACATCAGCACTGACCAATGG 59.529 52.381 1.71 0.00 43.11 3.16
1343 1690 0.038166 TCTTGATGAGGTTGGTGGGC 59.962 55.000 0.00 0.00 0.00 5.36
2159 2509 0.025001 CTTAAGCATGACGCCGTTCG 59.975 55.000 0.00 0.00 44.04 3.95
2265 2615 4.839121 ACTTTATGCTTTCACGGATACCA 58.161 39.130 0.00 0.00 0.00 3.25
2637 2987 2.421424 GACAACTGGATCTTCATGTGCC 59.579 50.000 0.00 0.00 0.00 5.01
2923 3303 1.745489 GACCATCACCGGTGGAAGC 60.745 63.158 33.40 15.85 40.22 3.86
2944 3324 4.567159 GGAAAGATACATGTCGAAGTCCAC 59.433 45.833 0.00 0.00 0.00 4.02
2955 3335 5.985530 TGTAGCAATCTCGGAAAGATACATG 59.014 40.000 0.00 0.00 44.26 3.21
3021 3401 0.394762 TACTACGTGGCGTCAGGGAT 60.395 55.000 14.91 1.43 41.54 3.85
3093 3473 1.517257 CGCCATCTTCGAGAGCGTT 60.517 57.895 8.00 0.00 41.78 4.84
3146 3526 6.036735 TGCAGAAAATATAGAACTAACCGTGC 59.963 38.462 0.00 0.00 0.00 5.34
3156 3536 9.383519 CTTCCTGTTACTGCAGAAAATATAGAA 57.616 33.333 23.35 14.97 38.70 2.10
3225 3605 1.723608 CGCAAACAAGTGCCTCCACA 61.724 55.000 0.00 0.00 44.53 4.17
3258 3638 3.443045 GCGGGTGGTGAATGCAGG 61.443 66.667 0.00 0.00 0.00 4.85
3287 3667 1.881973 CCTACTGCATTGCACAACTGT 59.118 47.619 7.38 6.48 33.79 3.55
3288 3668 1.401931 GCCTACTGCATTGCACAACTG 60.402 52.381 7.38 0.00 40.77 3.16
3290 3670 0.883833 AGCCTACTGCATTGCACAAC 59.116 50.000 7.38 0.00 44.83 3.32
3292 3672 0.325933 AGAGCCTACTGCATTGCACA 59.674 50.000 7.38 0.00 44.83 4.57
3293 3673 0.731417 CAGAGCCTACTGCATTGCAC 59.269 55.000 7.38 0.00 44.83 4.57
3294 3674 3.164026 CAGAGCCTACTGCATTGCA 57.836 52.632 11.50 11.50 44.83 4.08
3328 3708 7.552458 AGCTACAGATACGAGATCATATCAG 57.448 40.000 11.87 7.86 31.34 2.90
3344 3724 3.239449 TCTCCCTGAAACAAGCTACAGA 58.761 45.455 0.00 0.00 32.90 3.41
3378 3759 2.787473 TGCTGAAATAGACCACCAGG 57.213 50.000 0.00 0.00 42.21 4.45
3389 3770 3.718956 ACTAGCTAGGGGATTGCTGAAAT 59.281 43.478 24.35 0.00 40.39 2.17
3422 3804 1.883275 TGTTCATAAACAACCCCGCTG 59.117 47.619 0.00 0.00 42.34 5.18
3436 3818 8.945481 TGAAAACAACAAATTCTCATGTTCAT 57.055 26.923 0.00 0.00 37.66 2.57
3437 3819 8.819015 CATGAAAACAACAAATTCTCATGTTCA 58.181 29.630 0.00 0.00 37.66 3.18
3438 3820 8.819974 ACATGAAAACAACAAATTCTCATGTTC 58.180 29.630 0.00 0.00 45.85 3.18
3439 3821 8.605746 CACATGAAAACAACAAATTCTCATGTT 58.394 29.630 11.09 0.00 45.85 2.71
3485 3868 9.816354 GCATAAATCCACTAAAAATAACCATGT 57.184 29.630 0.00 0.00 0.00 3.21
3499 3882 3.973425 AGAGCAAAGGCATAAATCCACT 58.027 40.909 0.00 0.00 44.61 4.00
3510 3893 1.171308 TGCATCTCAAGAGCAAAGGC 58.829 50.000 0.00 0.00 41.61 4.35
3511 3894 5.996513 AGTATATGCATCTCAAGAGCAAAGG 59.003 40.000 0.19 0.00 42.15 3.11
3512 3895 7.493743 AAGTATATGCATCTCAAGAGCAAAG 57.506 36.000 0.19 0.00 42.15 2.77
3516 3899 7.492020 CCAGATAAGTATATGCATCTCAAGAGC 59.508 40.741 0.19 0.00 0.00 4.09
3603 3991 9.914834 ACCACAAGAAAATAATAAGCCTGTATA 57.085 29.630 0.00 0.00 0.00 1.47
3604 3992 8.823220 ACCACAAGAAAATAATAAGCCTGTAT 57.177 30.769 0.00 0.00 0.00 2.29
3605 3993 8.644374 AACCACAAGAAAATAATAAGCCTGTA 57.356 30.769 0.00 0.00 0.00 2.74
3606 3994 7.451566 AGAACCACAAGAAAATAATAAGCCTGT 59.548 33.333 0.00 0.00 0.00 4.00
3607 3995 7.830739 AGAACCACAAGAAAATAATAAGCCTG 58.169 34.615 0.00 0.00 0.00 4.85
3708 4096 9.206870 CACCAACATAACTGAAGCAATTTTATT 57.793 29.630 0.00 0.00 0.00 1.40
3712 4100 5.511202 CCCACCAACATAACTGAAGCAATTT 60.511 40.000 0.00 0.00 0.00 1.82
3713 4101 4.021192 CCCACCAACATAACTGAAGCAATT 60.021 41.667 0.00 0.00 0.00 2.32
3714 4102 3.511146 CCCACCAACATAACTGAAGCAAT 59.489 43.478 0.00 0.00 0.00 3.56
3729 4117 3.522392 TGCATGCATATATCCCACCAA 57.478 42.857 18.46 0.00 0.00 3.67
3742 4130 3.819902 TGAAGCCGAAATATATGCATGCA 59.180 39.130 25.04 25.04 0.00 3.96
3743 4131 4.424061 TGAAGCCGAAATATATGCATGC 57.576 40.909 11.82 11.82 0.00 4.06
3753 4141 6.377146 ACCACTAACATAATTGAAGCCGAAAT 59.623 34.615 0.00 0.00 0.00 2.17
3778 4166 7.764141 TTAATGAGCACCTACGTACCATATA 57.236 36.000 0.00 0.00 0.00 0.86
3783 4171 3.979495 CGATTAATGAGCACCTACGTACC 59.021 47.826 0.00 0.00 0.00 3.34
3784 4172 4.604976 ACGATTAATGAGCACCTACGTAC 58.395 43.478 0.00 0.00 0.00 3.67
3785 4173 4.906065 ACGATTAATGAGCACCTACGTA 57.094 40.909 0.00 0.00 0.00 3.57
3786 4174 3.795623 ACGATTAATGAGCACCTACGT 57.204 42.857 0.00 0.00 0.00 3.57
3787 4175 7.862741 TTATTACGATTAATGAGCACCTACG 57.137 36.000 0.00 0.00 0.00 3.51
3823 4211 7.975616 CCCAACCAACTTGATATTTTGAGTATG 59.024 37.037 0.00 0.00 30.42 2.39
3855 4243 2.892215 TGACCATTTCAGATTGCAGCAA 59.108 40.909 11.07 11.07 0.00 3.91
3858 4246 7.485810 TGAAATATGACCATTTCAGATTGCAG 58.514 34.615 7.07 0.00 43.73 4.41
3859 4247 7.407393 TGAAATATGACCATTTCAGATTGCA 57.593 32.000 7.07 0.00 45.57 4.08
3888 4280 5.166398 AGTAGAAAACCCGAACAGATTACG 58.834 41.667 0.00 0.00 0.00 3.18
3909 4301 6.620733 GCAGATTACAAAAGACATGCGTTAGT 60.621 38.462 0.00 0.00 0.00 2.24
3910 4302 5.734498 GCAGATTACAAAAGACATGCGTTAG 59.266 40.000 0.00 0.00 0.00 2.34
3911 4303 5.411361 AGCAGATTACAAAAGACATGCGTTA 59.589 36.000 0.00 0.00 37.50 3.18
3915 4307 5.106396 ACAGAGCAGATTACAAAAGACATGC 60.106 40.000 0.00 0.00 0.00 4.06
3917 4309 6.488006 ACAACAGAGCAGATTACAAAAGACAT 59.512 34.615 0.00 0.00 0.00 3.06
3918 4310 5.822519 ACAACAGAGCAGATTACAAAAGACA 59.177 36.000 0.00 0.00 0.00 3.41
3919 4311 6.305693 ACAACAGAGCAGATTACAAAAGAC 57.694 37.500 0.00 0.00 0.00 3.01
3920 4312 6.767902 AGAACAACAGAGCAGATTACAAAAGA 59.232 34.615 0.00 0.00 0.00 2.52
3921 4313 6.854892 CAGAACAACAGAGCAGATTACAAAAG 59.145 38.462 0.00 0.00 0.00 2.27
3922 4314 6.542005 TCAGAACAACAGAGCAGATTACAAAA 59.458 34.615 0.00 0.00 0.00 2.44
3975 4367 9.859427 TTTGATGATGACTGGAAATAAATTCAC 57.141 29.630 0.00 0.00 39.98 3.18
4008 4400 9.793259 TGACAAACTGATAGAGGTTAATCTTTT 57.207 29.630 0.00 0.00 27.01 2.27
4009 4401 9.793259 TTGACAAACTGATAGAGGTTAATCTTT 57.207 29.630 0.00 0.00 27.01 2.52
4010 4402 9.793259 TTTGACAAACTGATAGAGGTTAATCTT 57.207 29.630 0.00 0.00 27.01 2.40
4011 4403 9.965902 ATTTGACAAACTGATAGAGGTTAATCT 57.034 29.630 1.94 0.00 27.01 2.40
4015 4407 9.871238 GAGTATTTGACAAACTGATAGAGGTTA 57.129 33.333 1.94 0.00 27.01 2.85
4016 4408 8.598041 AGAGTATTTGACAAACTGATAGAGGTT 58.402 33.333 1.94 0.00 28.32 3.50
4017 4409 8.037758 CAGAGTATTTGACAAACTGATAGAGGT 58.962 37.037 1.94 0.00 31.89 3.85
4018 4410 7.493971 CCAGAGTATTTGACAAACTGATAGAGG 59.506 40.741 14.60 3.79 31.89 3.69
4019 4411 8.037758 ACCAGAGTATTTGACAAACTGATAGAG 58.962 37.037 14.60 4.04 31.89 2.43
4020 4412 7.907389 ACCAGAGTATTTGACAAACTGATAGA 58.093 34.615 14.60 0.00 31.89 1.98
4021 4413 9.307121 CTACCAGAGTATTTGACAAACTGATAG 57.693 37.037 14.60 9.42 31.89 2.08
4022 4414 9.031537 TCTACCAGAGTATTTGACAAACTGATA 57.968 33.333 14.60 4.66 31.89 2.15
4023 4415 7.907389 TCTACCAGAGTATTTGACAAACTGAT 58.093 34.615 14.60 3.85 31.89 2.90
4024 4416 7.297936 TCTACCAGAGTATTTGACAAACTGA 57.702 36.000 14.60 0.00 31.89 3.41
4025 4417 9.653287 TTATCTACCAGAGTATTTGACAAACTG 57.347 33.333 1.94 6.08 0.00 3.16
4052 4444 9.855021 GCTTTGGTTACTATATTGTGATGTTTT 57.145 29.630 0.00 0.00 0.00 2.43
4053 4445 9.019656 TGCTTTGGTTACTATATTGTGATGTTT 57.980 29.630 0.00 0.00 0.00 2.83
4054 4446 8.574251 TGCTTTGGTTACTATATTGTGATGTT 57.426 30.769 0.00 0.00 0.00 2.71
4055 4447 7.829211 ACTGCTTTGGTTACTATATTGTGATGT 59.171 33.333 0.00 0.00 0.00 3.06
4056 4448 8.213518 ACTGCTTTGGTTACTATATTGTGATG 57.786 34.615 0.00 0.00 0.00 3.07
4057 4449 8.046708 TGACTGCTTTGGTTACTATATTGTGAT 58.953 33.333 0.00 0.00 0.00 3.06
4058 4450 7.390823 TGACTGCTTTGGTTACTATATTGTGA 58.609 34.615 0.00 0.00 0.00 3.58
4059 4451 7.609760 TGACTGCTTTGGTTACTATATTGTG 57.390 36.000 0.00 0.00 0.00 3.33
4060 4452 6.316390 GCTGACTGCTTTGGTTACTATATTGT 59.684 38.462 0.00 0.00 38.95 2.71
4061 4453 6.316140 TGCTGACTGCTTTGGTTACTATATTG 59.684 38.462 5.87 0.00 43.37 1.90
4062 4454 6.414732 TGCTGACTGCTTTGGTTACTATATT 58.585 36.000 5.87 0.00 43.37 1.28
4063 4455 5.989477 TGCTGACTGCTTTGGTTACTATAT 58.011 37.500 5.87 0.00 43.37 0.86
4064 4456 5.414789 TGCTGACTGCTTTGGTTACTATA 57.585 39.130 5.87 0.00 43.37 1.31
4065 4457 4.286297 TGCTGACTGCTTTGGTTACTAT 57.714 40.909 5.87 0.00 43.37 2.12
4066 4458 3.762407 TGCTGACTGCTTTGGTTACTA 57.238 42.857 5.87 0.00 43.37 1.82
4067 4459 2.638480 TGCTGACTGCTTTGGTTACT 57.362 45.000 5.87 0.00 43.37 2.24
4068 4460 4.035675 GGATATGCTGACTGCTTTGGTTAC 59.964 45.833 5.87 0.00 43.37 2.50
4069 4461 4.199310 GGATATGCTGACTGCTTTGGTTA 58.801 43.478 5.87 0.00 43.37 2.85
4070 4462 3.019564 GGATATGCTGACTGCTTTGGTT 58.980 45.455 5.87 0.00 43.37 3.67
4071 4463 2.648059 GGATATGCTGACTGCTTTGGT 58.352 47.619 5.87 0.00 43.37 3.67
4072 4464 1.952296 GGGATATGCTGACTGCTTTGG 59.048 52.381 5.87 0.00 43.37 3.28
4073 4465 2.646930 TGGGATATGCTGACTGCTTTG 58.353 47.619 5.87 0.00 43.37 2.77
4074 4466 3.370840 TTGGGATATGCTGACTGCTTT 57.629 42.857 5.87 0.00 43.37 3.51
4075 4467 3.370840 TTTGGGATATGCTGACTGCTT 57.629 42.857 5.87 2.10 43.37 3.91
4076 4468 3.589951 ATTTGGGATATGCTGACTGCT 57.410 42.857 5.87 0.00 43.37 4.24
4077 4469 5.772825 TTTATTTGGGATATGCTGACTGC 57.227 39.130 0.00 0.00 43.25 4.40
4078 4470 7.067372 TCAGTTTTATTTGGGATATGCTGACTG 59.933 37.037 0.00 0.00 0.00 3.51
4079 4471 7.067494 GTCAGTTTTATTTGGGATATGCTGACT 59.933 37.037 0.00 0.00 43.07 3.41
4080 4472 7.196331 GTCAGTTTTATTTGGGATATGCTGAC 58.804 38.462 0.00 0.00 41.08 3.51
4081 4473 6.038161 CGTCAGTTTTATTTGGGATATGCTGA 59.962 38.462 0.00 0.00 0.00 4.26
4082 4474 6.183360 ACGTCAGTTTTATTTGGGATATGCTG 60.183 38.462 0.00 0.00 0.00 4.41
4083 4475 5.885912 ACGTCAGTTTTATTTGGGATATGCT 59.114 36.000 0.00 0.00 0.00 3.79
4084 4476 5.971202 CACGTCAGTTTTATTTGGGATATGC 59.029 40.000 0.00 0.00 0.00 3.14
4085 4477 5.971202 GCACGTCAGTTTTATTTGGGATATG 59.029 40.000 0.00 0.00 0.00 1.78
4086 4478 5.650266 TGCACGTCAGTTTTATTTGGGATAT 59.350 36.000 0.00 0.00 0.00 1.63
4087 4479 5.004448 TGCACGTCAGTTTTATTTGGGATA 58.996 37.500 0.00 0.00 0.00 2.59
4088 4480 3.823873 TGCACGTCAGTTTTATTTGGGAT 59.176 39.130 0.00 0.00 0.00 3.85
4089 4481 3.003897 GTGCACGTCAGTTTTATTTGGGA 59.996 43.478 0.00 0.00 0.00 4.37
4090 4482 3.004315 AGTGCACGTCAGTTTTATTTGGG 59.996 43.478 12.01 0.00 0.00 4.12
4091 4483 3.974401 CAGTGCACGTCAGTTTTATTTGG 59.026 43.478 12.01 0.00 0.00 3.28
4092 4484 4.597079 ACAGTGCACGTCAGTTTTATTTG 58.403 39.130 12.01 1.62 0.00 2.32
4093 4485 4.893424 ACAGTGCACGTCAGTTTTATTT 57.107 36.364 12.01 0.00 0.00 1.40
4094 4486 5.054477 AGTACAGTGCACGTCAGTTTTATT 58.946 37.500 12.01 0.00 0.00 1.40
4095 4487 4.628074 AGTACAGTGCACGTCAGTTTTAT 58.372 39.130 12.01 0.00 0.00 1.40
4096 4488 4.049546 AGTACAGTGCACGTCAGTTTTA 57.950 40.909 12.01 0.00 0.00 1.52
4097 4489 2.901249 AGTACAGTGCACGTCAGTTTT 58.099 42.857 12.01 0.00 0.00 2.43
4098 4490 2.596904 AGTACAGTGCACGTCAGTTT 57.403 45.000 12.01 0.00 0.00 2.66
4099 4491 2.607282 GCTAGTACAGTGCACGTCAGTT 60.607 50.000 12.01 0.00 0.00 3.16
4100 4492 1.068472 GCTAGTACAGTGCACGTCAGT 60.068 52.381 12.01 11.39 0.00 3.41
4101 4493 1.618861 GCTAGTACAGTGCACGTCAG 58.381 55.000 12.01 11.09 0.00 3.51
4102 4494 0.242825 GGCTAGTACAGTGCACGTCA 59.757 55.000 12.01 0.00 0.00 4.35
4103 4495 0.458025 GGGCTAGTACAGTGCACGTC 60.458 60.000 12.01 3.45 0.00 4.34
4104 4496 1.183030 TGGGCTAGTACAGTGCACGT 61.183 55.000 12.01 14.66 31.92 4.49
4105 4497 0.037697 TTGGGCTAGTACAGTGCACG 60.038 55.000 12.01 9.15 31.92 5.34
4106 4498 2.178912 TTTGGGCTAGTACAGTGCAC 57.821 50.000 9.40 9.40 0.00 4.57
4107 4499 2.571653 AGATTTGGGCTAGTACAGTGCA 59.428 45.455 0.00 0.00 0.00 4.57
4108 4500 3.268023 AGATTTGGGCTAGTACAGTGC 57.732 47.619 0.00 0.00 0.00 4.40
4122 4514 0.684153 ATCGGGTGCCCCAAGATTTG 60.684 55.000 10.47 0.00 45.83 2.32
4123 4515 0.684153 CATCGGGTGCCCCAAGATTT 60.684 55.000 10.47 0.00 45.83 2.17
4124 4516 1.076777 CATCGGGTGCCCCAAGATT 60.077 57.895 10.47 0.00 45.83 2.40
4125 4517 2.597340 CATCGGGTGCCCCAAGAT 59.403 61.111 10.47 0.83 45.83 2.40
4134 4526 2.682352 TGACACAATAATGCATCGGGTG 59.318 45.455 0.00 9.24 0.00 4.61
4135 4527 2.997980 TGACACAATAATGCATCGGGT 58.002 42.857 0.00 0.00 0.00 5.28
4136 4528 3.854414 GCATGACACAATAATGCATCGGG 60.854 47.826 0.00 0.00 44.83 5.14
4137 4529 3.302555 GCATGACACAATAATGCATCGG 58.697 45.455 0.00 0.00 44.83 4.18
4157 4549 2.603173 GGCATTTCGCTGCTGTATAAGC 60.603 50.000 0.00 0.00 45.05 3.09
4158 4550 2.874701 AGGCATTTCGCTGCTGTATAAG 59.125 45.455 0.00 0.00 41.95 1.73
4159 4551 2.917933 AGGCATTTCGCTGCTGTATAA 58.082 42.857 0.00 0.00 41.95 0.98
4160 4552 2.620251 AGGCATTTCGCTGCTGTATA 57.380 45.000 0.00 0.00 41.95 1.47
4161 4553 1.672881 GAAGGCATTTCGCTGCTGTAT 59.327 47.619 0.00 0.00 41.95 2.29
4162 4554 1.086696 GAAGGCATTTCGCTGCTGTA 58.913 50.000 0.00 0.00 41.95 2.74
4163 4555 0.890542 TGAAGGCATTTCGCTGCTGT 60.891 50.000 0.00 0.00 41.95 4.40
4164 4556 0.455633 GTGAAGGCATTTCGCTGCTG 60.456 55.000 0.00 0.00 41.92 4.41
4165 4557 1.589716 GGTGAAGGCATTTCGCTGCT 61.590 55.000 11.84 0.00 44.08 4.24
4166 4558 1.153958 GGTGAAGGCATTTCGCTGC 60.154 57.895 11.84 0.00 44.08 5.25
4167 4559 0.109597 GTGGTGAAGGCATTTCGCTG 60.110 55.000 11.84 0.00 44.08 5.18
4168 4560 1.244019 GGTGGTGAAGGCATTTCGCT 61.244 55.000 11.84 0.00 44.08 4.93
4169 4561 1.212751 GGTGGTGAAGGCATTTCGC 59.787 57.895 5.46 5.46 43.94 4.70
4170 4562 0.958091 TTGGTGGTGAAGGCATTTCG 59.042 50.000 0.00 0.00 38.71 3.46
4171 4563 3.683365 ATTTGGTGGTGAAGGCATTTC 57.317 42.857 0.00 0.00 36.29 2.17
4172 4564 3.260632 GGTATTTGGTGGTGAAGGCATTT 59.739 43.478 0.00 0.00 0.00 2.32
4173 4565 2.831526 GGTATTTGGTGGTGAAGGCATT 59.168 45.455 0.00 0.00 0.00 3.56
4174 4566 2.456577 GGTATTTGGTGGTGAAGGCAT 58.543 47.619 0.00 0.00 0.00 4.40
4175 4567 1.884497 CGGTATTTGGTGGTGAAGGCA 60.884 52.381 0.00 0.00 0.00 4.75
4176 4568 0.808755 CGGTATTTGGTGGTGAAGGC 59.191 55.000 0.00 0.00 0.00 4.35
4177 4569 2.483014 TCGGTATTTGGTGGTGAAGG 57.517 50.000 0.00 0.00 0.00 3.46
4178 4570 3.605634 TCATCGGTATTTGGTGGTGAAG 58.394 45.455 0.00 0.00 0.00 3.02
4179 4571 3.704800 TCATCGGTATTTGGTGGTGAA 57.295 42.857 0.00 0.00 0.00 3.18
4180 4572 3.198853 TCATCATCGGTATTTGGTGGTGA 59.801 43.478 0.00 0.00 0.00 4.02
4181 4573 3.540617 TCATCATCGGTATTTGGTGGTG 58.459 45.455 0.00 0.00 0.00 4.17
4182 4574 3.924114 TCATCATCGGTATTTGGTGGT 57.076 42.857 0.00 0.00 0.00 4.16
4183 4575 4.036734 CCTTTCATCATCGGTATTTGGTGG 59.963 45.833 0.00 0.00 0.00 4.61
4184 4576 4.498009 GCCTTTCATCATCGGTATTTGGTG 60.498 45.833 0.00 0.00 0.00 4.17
4185 4577 3.632145 GCCTTTCATCATCGGTATTTGGT 59.368 43.478 0.00 0.00 0.00 3.67
4186 4578 3.004734 GGCCTTTCATCATCGGTATTTGG 59.995 47.826 0.00 0.00 0.00 3.28
4187 4579 3.885297 AGGCCTTTCATCATCGGTATTTG 59.115 43.478 0.00 0.00 0.00 2.32
4188 4580 4.137543 GAGGCCTTTCATCATCGGTATTT 58.862 43.478 6.77 0.00 0.00 1.40
4189 4581 3.496870 GGAGGCCTTTCATCATCGGTATT 60.497 47.826 6.77 0.00 0.00 1.89
4190 4582 2.039084 GGAGGCCTTTCATCATCGGTAT 59.961 50.000 6.77 0.00 0.00 2.73
4191 4583 1.416401 GGAGGCCTTTCATCATCGGTA 59.584 52.381 6.77 0.00 0.00 4.02
4192 4584 0.181350 GGAGGCCTTTCATCATCGGT 59.819 55.000 6.77 0.00 0.00 4.69
4193 4585 0.536006 GGGAGGCCTTTCATCATCGG 60.536 60.000 6.77 0.00 0.00 4.18
4194 4586 0.882042 CGGGAGGCCTTTCATCATCG 60.882 60.000 6.77 0.00 0.00 3.84
4195 4587 0.181350 ACGGGAGGCCTTTCATCATC 59.819 55.000 6.77 0.00 0.00 2.92
4196 4588 0.625849 AACGGGAGGCCTTTCATCAT 59.374 50.000 6.77 0.00 0.00 2.45
4197 4589 0.035439 GAACGGGAGGCCTTTCATCA 60.035 55.000 6.77 0.00 0.00 3.07
4198 4590 0.253327 AGAACGGGAGGCCTTTCATC 59.747 55.000 6.77 2.30 0.00 2.92
4199 4591 0.698818 AAGAACGGGAGGCCTTTCAT 59.301 50.000 6.77 0.00 0.00 2.57
4200 4592 0.476771 AAAGAACGGGAGGCCTTTCA 59.523 50.000 6.77 0.00 32.74 2.69
4201 4593 0.881796 CAAAGAACGGGAGGCCTTTC 59.118 55.000 6.77 6.78 34.81 2.62
4202 4594 1.179174 GCAAAGAACGGGAGGCCTTT 61.179 55.000 6.77 0.00 36.51 3.11
4203 4595 1.603739 GCAAAGAACGGGAGGCCTT 60.604 57.895 6.77 0.00 0.00 4.35
4204 4596 2.034221 GCAAAGAACGGGAGGCCT 59.966 61.111 3.86 3.86 0.00 5.19
4205 4597 3.431725 CGCAAAGAACGGGAGGCC 61.432 66.667 0.00 0.00 0.00 5.19
4206 4598 1.706287 GATCGCAAAGAACGGGAGGC 61.706 60.000 0.00 0.00 0.00 4.70
4207 4599 1.090052 GGATCGCAAAGAACGGGAGG 61.090 60.000 0.00 0.00 0.00 4.30
4208 4600 0.108138 AGGATCGCAAAGAACGGGAG 60.108 55.000 0.00 0.00 0.00 4.30
4209 4601 0.323629 AAGGATCGCAAAGAACGGGA 59.676 50.000 0.00 0.00 0.00 5.14
4210 4602 1.165270 AAAGGATCGCAAAGAACGGG 58.835 50.000 0.00 0.00 0.00 5.28
4211 4603 2.989422 AAAAGGATCGCAAAGAACGG 57.011 45.000 0.00 0.00 0.00 4.44
4212 4604 3.058224 AGGAAAAAGGATCGCAAAGAACG 60.058 43.478 0.00 0.00 0.00 3.95
4213 4605 4.505313 AGGAAAAAGGATCGCAAAGAAC 57.495 40.909 0.00 0.00 0.00 3.01
4214 4606 5.529581 AAAGGAAAAAGGATCGCAAAGAA 57.470 34.783 0.00 0.00 0.00 2.52
4215 4607 5.529581 AAAAGGAAAAAGGATCGCAAAGA 57.470 34.783 0.00 0.00 0.00 2.52
4260 4652 9.369904 GGAAGTGTACTCCGTATTATTGTTTAA 57.630 33.333 0.00 0.00 0.00 1.52
4261 4653 8.530311 TGGAAGTGTACTCCGTATTATTGTTTA 58.470 33.333 0.00 0.00 0.00 2.01
4262 4654 7.388437 TGGAAGTGTACTCCGTATTATTGTTT 58.612 34.615 0.00 0.00 0.00 2.83
4263 4655 6.938507 TGGAAGTGTACTCCGTATTATTGTT 58.061 36.000 0.00 0.00 0.00 2.83
4264 4656 6.534475 TGGAAGTGTACTCCGTATTATTGT 57.466 37.500 0.00 0.00 0.00 2.71
4265 4657 8.139350 TGTATGGAAGTGTACTCCGTATTATTG 58.861 37.037 5.20 0.00 0.00 1.90
4266 4658 8.241497 TGTATGGAAGTGTACTCCGTATTATT 57.759 34.615 5.20 0.00 0.00 1.40
4267 4659 7.828508 TGTATGGAAGTGTACTCCGTATTAT 57.171 36.000 5.20 0.00 0.00 1.28
4268 4660 7.828508 ATGTATGGAAGTGTACTCCGTATTA 57.171 36.000 5.20 0.38 0.00 0.98
4269 4661 6.726490 ATGTATGGAAGTGTACTCCGTATT 57.274 37.500 5.20 0.00 0.00 1.89
4270 4662 6.774170 TGTATGTATGGAAGTGTACTCCGTAT 59.226 38.462 5.20 0.00 0.00 3.06
4271 4663 6.121590 TGTATGTATGGAAGTGTACTCCGTA 58.878 40.000 0.00 0.00 0.00 4.02
4272 4664 4.951715 TGTATGTATGGAAGTGTACTCCGT 59.048 41.667 0.00 0.00 0.00 4.69
4273 4665 5.509716 TGTATGTATGGAAGTGTACTCCG 57.490 43.478 0.00 0.00 0.00 4.63
4285 4677 3.228188 AGTTGCCCCATGTATGTATGG 57.772 47.619 0.00 0.00 45.83 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.