Multiple sequence alignment - TraesCS6A01G114700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G114700 chr6A 100.000 5661 0 0 1 5661 84691696 84697356 0.000000e+00 10455.0
1 TraesCS6A01G114700 chr6A 86.598 679 58 16 1 670 178471597 178470943 0.000000e+00 719.0
2 TraesCS6A01G114700 chr6B 91.321 3998 257 50 1021 4969 142086301 142090257 0.000000e+00 5378.0
3 TraesCS6A01G114700 chr6B 83.221 596 66 13 2940 3520 142131402 142131978 3.020000e-142 516.0
4 TraesCS6A01G114700 chr6D 94.017 2691 122 26 2292 4969 67319504 67322168 0.000000e+00 4041.0
5 TraesCS6A01G114700 chr6D 89.091 715 30 18 4983 5661 67323184 67323886 0.000000e+00 845.0
6 TraesCS6A01G114700 chr6D 85.119 168 23 1 504 671 6552507 6552672 2.710000e-38 171.0
7 TraesCS6A01G114700 chr2A 89.881 672 57 7 1 670 691848243 691848905 0.000000e+00 854.0
8 TraesCS6A01G114700 chr7D 88.726 683 58 16 1 670 593671318 593670642 0.000000e+00 817.0
9 TraesCS6A01G114700 chr3A 86.815 675 59 15 1 670 692984547 692985196 0.000000e+00 726.0
10 TraesCS6A01G114700 chr3A 93.764 433 25 2 2 434 623603661 623604091 0.000000e+00 649.0
11 TraesCS6A01G114700 chr3A 85.692 629 49 24 1 593 665999642 666000265 4.820000e-175 625.0
12 TraesCS6A01G114700 chr3A 82.000 100 16 2 2914 3012 725342654 725342752 3.630000e-12 84.2
13 TraesCS6A01G114700 chr1D 85.592 701 66 21 1 673 208181198 208181891 0.000000e+00 702.0
14 TraesCS6A01G114700 chr1D 86.232 138 17 1 504 641 433910983 433911118 1.270000e-31 148.0
15 TraesCS6A01G114700 chrUn 95.581 430 18 1 1 430 21561726 21561298 0.000000e+00 688.0
16 TraesCS6A01G114700 chr5D 94.253 435 24 1 1 435 482290271 482289838 0.000000e+00 664.0
17 TraesCS6A01G114700 chr2D 84.844 706 45 23 7 670 318417262 318416577 0.000000e+00 654.0
18 TraesCS6A01G114700 chr2D 89.239 381 27 10 66 435 617729734 617730111 1.110000e-126 464.0
19 TraesCS6A01G114700 chr7A 84.538 692 63 17 6 670 720120276 720120950 0.000000e+00 645.0
20 TraesCS6A01G114700 chr1A 84.380 685 72 18 6 673 105283719 105284385 1.720000e-179 640.0
21 TraesCS6A01G114700 chr4D 83.225 614 43 27 113 670 22557245 22556636 5.060000e-140 508.0
22 TraesCS6A01G114700 chr4D 88.095 168 17 2 504 671 396622276 396622112 4.470000e-46 196.0
23 TraesCS6A01G114700 chr3B 80.090 221 39 4 452 670 534231098 534230881 5.870000e-35 159.0
24 TraesCS6A01G114700 chr7B 82.659 173 23 4 504 671 1263838 1264008 4.570000e-31 147.0
25 TraesCS6A01G114700 chr4B 82.993 147 21 4 528 670 621822175 621822029 4.600000e-26 130.0
26 TraesCS6A01G114700 chr3D 80.000 100 18 2 2914 3012 594505805 594505903 7.870000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G114700 chr6A 84691696 84697356 5660 False 10455 10455 100.000 1 5661 1 chr6A.!!$F1 5660
1 TraesCS6A01G114700 chr6A 178470943 178471597 654 True 719 719 86.598 1 670 1 chr6A.!!$R1 669
2 TraesCS6A01G114700 chr6B 142086301 142090257 3956 False 5378 5378 91.321 1021 4969 1 chr6B.!!$F1 3948
3 TraesCS6A01G114700 chr6B 142131402 142131978 576 False 516 516 83.221 2940 3520 1 chr6B.!!$F2 580
4 TraesCS6A01G114700 chr6D 67319504 67323886 4382 False 2443 4041 91.554 2292 5661 2 chr6D.!!$F2 3369
5 TraesCS6A01G114700 chr2A 691848243 691848905 662 False 854 854 89.881 1 670 1 chr2A.!!$F1 669
6 TraesCS6A01G114700 chr7D 593670642 593671318 676 True 817 817 88.726 1 670 1 chr7D.!!$R1 669
7 TraesCS6A01G114700 chr3A 692984547 692985196 649 False 726 726 86.815 1 670 1 chr3A.!!$F3 669
8 TraesCS6A01G114700 chr3A 665999642 666000265 623 False 625 625 85.692 1 593 1 chr3A.!!$F2 592
9 TraesCS6A01G114700 chr1D 208181198 208181891 693 False 702 702 85.592 1 673 1 chr1D.!!$F1 672
10 TraesCS6A01G114700 chr2D 318416577 318417262 685 True 654 654 84.844 7 670 1 chr2D.!!$R1 663
11 TraesCS6A01G114700 chr7A 720120276 720120950 674 False 645 645 84.538 6 670 1 chr7A.!!$F1 664
12 TraesCS6A01G114700 chr1A 105283719 105284385 666 False 640 640 84.380 6 673 1 chr1A.!!$F1 667
13 TraesCS6A01G114700 chr4D 22556636 22557245 609 True 508 508 83.225 113 670 1 chr4D.!!$R1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
761 870 0.036765 AGGCGGCGAGTTAATTGACA 60.037 50.000 12.98 0.0 0.00 3.58 F
1307 1417 0.037697 TGCATCAGAACGTAACCGCT 60.038 50.000 0.00 0.0 37.70 5.52 F
2174 2299 0.108585 GAAGAAGGCTGTGGTGACCA 59.891 55.000 0.00 0.0 0.00 4.02 F
2176 2301 1.056700 AGAAGGCTGTGGTGACCAGT 61.057 55.000 3.58 0.0 32.34 4.00 F
2203 2328 1.134580 CGCATCAGTGAACTCCCAGAT 60.135 52.381 0.00 0.0 0.00 2.90 F
3844 3990 1.945394 TCGTAGCGACTGGGTAGATTC 59.055 52.381 0.00 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2380 2505 0.034863 GTAAATGGCCACGGAGGGAA 60.035 55.000 8.16 0.00 38.09 3.97 R
2893 3018 1.002659 CCACAACCCCGACACTTATCA 59.997 52.381 0.00 0.00 0.00 2.15 R
3928 4074 2.032528 CTTTCACCTCGGGCTGCA 59.967 61.111 0.50 0.00 0.00 4.41 R
3979 4125 2.873245 GCTGACTTCCTGAAGATGCACA 60.873 50.000 13.58 5.13 40.79 4.57 R
3989 4135 3.754850 TCACATTCAATGCTGACTTCCTG 59.245 43.478 0.00 0.00 0.00 3.86 R
5098 6303 0.173708 CAGTTCGGCTGGGAGTCTAC 59.826 60.000 0.00 0.00 41.42 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 4.700365 CGCTGGCTCGACACGTCA 62.700 66.667 0.00 0.00 0.00 4.35
280 282 3.144193 CTCGGAGGAGAAGGCGCT 61.144 66.667 7.64 0.00 43.27 5.92
389 414 4.070552 AACGAGCGGGGCAGAGTC 62.071 66.667 0.00 0.00 0.00 3.36
421 448 1.268896 CCTTCTTATAACGAGCGCCGA 60.269 52.381 22.10 4.05 41.76 5.54
445 474 4.101790 CGCGCGCAAACCATTCCT 62.102 61.111 32.61 0.00 0.00 3.36
450 503 1.659233 CGCAAACCATTCCTGCACA 59.341 52.632 0.00 0.00 35.78 4.57
594 700 1.201647 CTAAAAGAGGACAGACGGCGA 59.798 52.381 16.62 0.00 0.00 5.54
625 731 2.828520 TGACCCAAACAGACAAAAAGCA 59.171 40.909 0.00 0.00 0.00 3.91
646 755 4.498345 GCAGACAAAAACACCGTCCATTTA 60.498 41.667 0.00 0.00 0.00 1.40
647 756 5.583495 CAGACAAAAACACCGTCCATTTAA 58.417 37.500 0.00 0.00 0.00 1.52
670 779 1.668919 CGGCTCGTTGAAGTTGCTCTA 60.669 52.381 0.00 0.00 0.00 2.43
671 780 1.996191 GGCTCGTTGAAGTTGCTCTAG 59.004 52.381 0.00 0.00 0.00 2.43
672 781 2.610727 GGCTCGTTGAAGTTGCTCTAGT 60.611 50.000 0.00 0.00 0.00 2.57
673 782 2.410053 GCTCGTTGAAGTTGCTCTAGTG 59.590 50.000 0.00 0.00 0.00 2.74
674 783 3.857383 GCTCGTTGAAGTTGCTCTAGTGA 60.857 47.826 0.00 0.00 0.00 3.41
675 784 3.902150 TCGTTGAAGTTGCTCTAGTGAG 58.098 45.455 0.00 0.00 42.96 3.51
676 785 3.568430 TCGTTGAAGTTGCTCTAGTGAGA 59.432 43.478 0.00 0.00 42.73 3.27
677 786 3.670991 CGTTGAAGTTGCTCTAGTGAGAC 59.329 47.826 0.00 0.00 42.73 3.36
678 787 3.560902 TGAAGTTGCTCTAGTGAGACG 57.439 47.619 0.00 0.00 42.73 4.18
679 788 2.229062 TGAAGTTGCTCTAGTGAGACGG 59.771 50.000 0.00 0.00 42.73 4.79
680 789 0.528470 AGTTGCTCTAGTGAGACGGC 59.472 55.000 0.00 0.00 42.73 5.68
681 790 0.798771 GTTGCTCTAGTGAGACGGCG 60.799 60.000 4.80 4.80 42.73 6.46
682 791 1.934220 TTGCTCTAGTGAGACGGCGG 61.934 60.000 13.24 0.00 42.73 6.13
683 792 2.409651 CTCTAGTGAGACGGCGGC 59.590 66.667 13.24 8.92 42.73 6.53
684 793 3.456431 CTCTAGTGAGACGGCGGCG 62.456 68.421 31.06 31.06 42.73 6.46
707 816 4.373116 GCCACGAGAAGCCCACGA 62.373 66.667 0.00 0.00 0.00 4.35
708 817 2.342279 CCACGAGAAGCCCACGAA 59.658 61.111 0.00 0.00 0.00 3.85
709 818 1.738099 CCACGAGAAGCCCACGAAG 60.738 63.158 0.00 0.00 0.00 3.79
710 819 1.738099 CACGAGAAGCCCACGAAGG 60.738 63.158 0.00 0.00 37.03 3.46
711 820 1.906824 ACGAGAAGCCCACGAAGGA 60.907 57.895 0.00 0.00 41.22 3.36
712 821 1.446272 CGAGAAGCCCACGAAGGAC 60.446 63.158 0.00 0.00 41.22 3.85
713 822 1.079057 GAGAAGCCCACGAAGGACC 60.079 63.158 0.00 0.00 41.22 4.46
714 823 1.827399 GAGAAGCCCACGAAGGACCA 61.827 60.000 0.00 0.00 41.22 4.02
715 824 1.072505 GAAGCCCACGAAGGACCAA 59.927 57.895 0.00 0.00 41.22 3.67
716 825 0.536460 GAAGCCCACGAAGGACCAAA 60.536 55.000 0.00 0.00 41.22 3.28
717 826 0.537371 AAGCCCACGAAGGACCAAAG 60.537 55.000 0.00 0.00 41.22 2.77
718 827 2.626780 GCCCACGAAGGACCAAAGC 61.627 63.158 0.00 0.00 41.22 3.51
719 828 1.971695 CCCACGAAGGACCAAAGCC 60.972 63.158 0.00 0.00 41.22 4.35
720 829 1.971695 CCACGAAGGACCAAAGCCC 60.972 63.158 0.00 0.00 41.22 5.19
721 830 2.032071 ACGAAGGACCAAAGCCCG 59.968 61.111 0.00 0.00 0.00 6.13
722 831 2.032071 CGAAGGACCAAAGCCCGT 59.968 61.111 0.00 0.00 0.00 5.28
723 832 2.325082 CGAAGGACCAAAGCCCGTG 61.325 63.158 0.00 0.00 0.00 4.94
724 833 2.597510 AAGGACCAAAGCCCGTGC 60.598 61.111 0.00 0.00 37.95 5.34
732 841 4.367023 AAGCCCGTGCGCTTCGTA 62.367 61.111 19.75 0.00 46.06 3.43
733 842 3.869473 AAGCCCGTGCGCTTCGTAA 62.869 57.895 19.75 0.00 46.06 3.18
734 843 4.143363 GCCCGTGCGCTTCGTAAC 62.143 66.667 19.75 4.29 0.00 2.50
735 844 3.484547 CCCGTGCGCTTCGTAACC 61.485 66.667 19.75 0.00 0.00 2.85
736 845 2.735478 CCGTGCGCTTCGTAACCA 60.735 61.111 19.75 0.00 0.00 3.67
737 846 2.468532 CGTGCGCTTCGTAACCAC 59.531 61.111 9.73 0.00 0.00 4.16
738 847 2.858158 GTGCGCTTCGTAACCACC 59.142 61.111 9.73 0.00 0.00 4.61
739 848 1.957186 GTGCGCTTCGTAACCACCA 60.957 57.895 9.73 0.00 0.00 4.17
740 849 1.957186 TGCGCTTCGTAACCACCAC 60.957 57.895 9.73 0.00 0.00 4.16
741 850 2.674084 GCGCTTCGTAACCACCACC 61.674 63.158 0.00 0.00 0.00 4.61
742 851 1.301087 CGCTTCGTAACCACCACCA 60.301 57.895 0.00 0.00 0.00 4.17
743 852 1.289109 CGCTTCGTAACCACCACCAG 61.289 60.000 0.00 0.00 0.00 4.00
744 853 0.953960 GCTTCGTAACCACCACCAGG 60.954 60.000 0.00 0.00 42.21 4.45
745 854 0.953960 CTTCGTAACCACCACCAGGC 60.954 60.000 0.00 0.00 39.06 4.85
746 855 2.718747 TTCGTAACCACCACCAGGCG 62.719 60.000 0.00 0.00 39.06 5.52
747 856 2.359478 GTAACCACCACCAGGCGG 60.359 66.667 0.00 0.00 43.12 6.13
748 857 4.338710 TAACCACCACCAGGCGGC 62.339 66.667 0.00 0.00 41.04 6.53
754 863 4.077184 CCACCAGGCGGCGAGTTA 62.077 66.667 12.98 0.00 34.57 2.24
755 864 2.047655 CACCAGGCGGCGAGTTAA 60.048 61.111 12.98 0.00 34.57 2.01
756 865 1.449601 CACCAGGCGGCGAGTTAAT 60.450 57.895 12.98 0.00 34.57 1.40
757 866 1.024579 CACCAGGCGGCGAGTTAATT 61.025 55.000 12.98 0.00 34.57 1.40
758 867 1.024579 ACCAGGCGGCGAGTTAATTG 61.025 55.000 12.98 0.00 34.57 2.32
759 868 0.742990 CCAGGCGGCGAGTTAATTGA 60.743 55.000 12.98 0.00 0.00 2.57
760 869 0.373716 CAGGCGGCGAGTTAATTGAC 59.626 55.000 12.98 0.00 0.00 3.18
761 870 0.036765 AGGCGGCGAGTTAATTGACA 60.037 50.000 12.98 0.00 0.00 3.58
762 871 0.373716 GGCGGCGAGTTAATTGACAG 59.626 55.000 12.98 0.00 0.00 3.51
763 872 1.355971 GCGGCGAGTTAATTGACAGA 58.644 50.000 12.98 0.00 0.00 3.41
764 873 1.060698 GCGGCGAGTTAATTGACAGAC 59.939 52.381 12.98 0.00 0.00 3.51
765 874 2.333926 CGGCGAGTTAATTGACAGACA 58.666 47.619 0.00 0.00 0.00 3.41
766 875 2.930040 CGGCGAGTTAATTGACAGACAT 59.070 45.455 0.00 0.00 0.00 3.06
767 876 3.000322 CGGCGAGTTAATTGACAGACATC 60.000 47.826 0.00 0.00 0.00 3.06
768 877 3.000322 GGCGAGTTAATTGACAGACATCG 60.000 47.826 2.93 4.17 0.00 3.84
769 878 3.542291 GCGAGTTAATTGACAGACATCGC 60.542 47.826 14.87 14.87 44.84 4.58
770 879 3.301197 CGAGTTAATTGACAGACATCGCG 60.301 47.826 0.00 0.00 0.00 5.87
771 880 2.930040 AGTTAATTGACAGACATCGCGG 59.070 45.455 6.13 0.00 0.00 6.46
772 881 2.665649 TAATTGACAGACATCGCGGT 57.334 45.000 6.13 0.00 0.00 5.68
773 882 1.359848 AATTGACAGACATCGCGGTC 58.640 50.000 6.13 6.86 38.08 4.79
774 883 0.460284 ATTGACAGACATCGCGGTCC 60.460 55.000 6.13 0.00 38.59 4.46
775 884 2.202756 GACAGACATCGCGGTCCC 60.203 66.667 6.13 0.00 38.59 4.46
776 885 4.129737 ACAGACATCGCGGTCCCG 62.130 66.667 6.13 0.24 38.59 5.14
777 886 4.129737 CAGACATCGCGGTCCCGT 62.130 66.667 6.13 0.00 42.09 5.28
787 896 3.119096 GGTCCCGTGCGCTTCTTC 61.119 66.667 9.73 0.00 0.00 2.87
788 897 3.119096 GTCCCGTGCGCTTCTTCC 61.119 66.667 9.73 0.00 0.00 3.46
789 898 3.311110 TCCCGTGCGCTTCTTCCT 61.311 61.111 9.73 0.00 0.00 3.36
790 899 3.121030 CCCGTGCGCTTCTTCCTG 61.121 66.667 9.73 0.00 0.00 3.86
791 900 3.793144 CCGTGCGCTTCTTCCTGC 61.793 66.667 9.73 0.00 0.00 4.85
792 901 3.793144 CGTGCGCTTCTTCCTGCC 61.793 66.667 9.73 0.00 0.00 4.85
793 902 2.359230 GTGCGCTTCTTCCTGCCT 60.359 61.111 9.73 0.00 0.00 4.75
794 903 2.046892 TGCGCTTCTTCCTGCCTC 60.047 61.111 9.73 0.00 0.00 4.70
795 904 2.821810 GCGCTTCTTCCTGCCTCC 60.822 66.667 0.00 0.00 0.00 4.30
796 905 2.124942 CGCTTCTTCCTGCCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
797 906 2.273776 GCTTCTTCCTGCCTCCCC 59.726 66.667 0.00 0.00 0.00 4.81
798 907 3.002371 CTTCTTCCTGCCTCCCCC 58.998 66.667 0.00 0.00 0.00 5.40
799 908 1.925455 CTTCTTCCTGCCTCCCCCA 60.925 63.158 0.00 0.00 0.00 4.96
800 909 1.465188 TTCTTCCTGCCTCCCCCAA 60.465 57.895 0.00 0.00 0.00 4.12
801 910 1.071314 TTCTTCCTGCCTCCCCCAAA 61.071 55.000 0.00 0.00 0.00 3.28
802 911 0.850883 TCTTCCTGCCTCCCCCAAAT 60.851 55.000 0.00 0.00 0.00 2.32
803 912 0.041684 CTTCCTGCCTCCCCCAAATT 59.958 55.000 0.00 0.00 0.00 1.82
804 913 0.491371 TTCCTGCCTCCCCCAAATTT 59.509 50.000 0.00 0.00 0.00 1.82
805 914 0.041090 TCCTGCCTCCCCCAAATTTC 59.959 55.000 0.00 0.00 0.00 2.17
806 915 0.977627 CCTGCCTCCCCCAAATTTCC 60.978 60.000 0.00 0.00 0.00 3.13
807 916 0.977627 CTGCCTCCCCCAAATTTCCC 60.978 60.000 0.00 0.00 0.00 3.97
808 917 1.689233 GCCTCCCCCAAATTTCCCC 60.689 63.158 0.00 0.00 0.00 4.81
809 918 1.381191 CCTCCCCCAAATTTCCCCG 60.381 63.158 0.00 0.00 0.00 5.73
810 919 2.038168 TCCCCCAAATTTCCCCGC 59.962 61.111 0.00 0.00 0.00 6.13
811 920 2.038813 CCCCCAAATTTCCCCGCT 59.961 61.111 0.00 0.00 0.00 5.52
812 921 2.058001 CCCCCAAATTTCCCCGCTC 61.058 63.158 0.00 0.00 0.00 5.03
813 922 2.058001 CCCCAAATTTCCCCGCTCC 61.058 63.158 0.00 0.00 0.00 4.70
814 923 2.058001 CCCAAATTTCCCCGCTCCC 61.058 63.158 0.00 0.00 0.00 4.30
815 924 2.414785 CCAAATTTCCCCGCTCCCG 61.415 63.158 0.00 0.00 0.00 5.14
816 925 2.754254 AAATTTCCCCGCTCCCGC 60.754 61.111 0.00 0.00 0.00 6.13
836 945 3.262686 GCGCGATTCGTCCCCTTC 61.263 66.667 12.10 0.00 41.07 3.46
837 946 2.585247 CGCGATTCGTCCCCTTCC 60.585 66.667 0.00 0.00 0.00 3.46
838 947 2.203029 GCGATTCGTCCCCTTCCC 60.203 66.667 8.03 0.00 0.00 3.97
839 948 2.504519 CGATTCGTCCCCTTCCCC 59.495 66.667 0.00 0.00 0.00 4.81
840 949 2.504519 GATTCGTCCCCTTCCCCG 59.495 66.667 0.00 0.00 0.00 5.73
841 950 3.752088 GATTCGTCCCCTTCCCCGC 62.752 68.421 0.00 0.00 0.00 6.13
845 954 3.974293 GTCCCCTTCCCCGCCAAA 61.974 66.667 0.00 0.00 0.00 3.28
846 955 2.944390 TCCCCTTCCCCGCCAAAT 60.944 61.111 0.00 0.00 0.00 2.32
847 956 2.442087 CCCCTTCCCCGCCAAATC 60.442 66.667 0.00 0.00 0.00 2.17
848 957 2.442087 CCCTTCCCCGCCAAATCC 60.442 66.667 0.00 0.00 0.00 3.01
849 958 2.442087 CCTTCCCCGCCAAATCCC 60.442 66.667 0.00 0.00 0.00 3.85
850 959 2.828549 CTTCCCCGCCAAATCCCG 60.829 66.667 0.00 0.00 0.00 5.14
878 987 4.016706 CCAAACCTCCCGCGACCT 62.017 66.667 8.23 0.00 0.00 3.85
879 988 2.742372 CAAACCTCCCGCGACCTG 60.742 66.667 8.23 0.00 0.00 4.00
880 989 4.699522 AAACCTCCCGCGACCTGC 62.700 66.667 8.23 0.00 41.47 4.85
899 1008 2.046314 GCTCGCTGGCCACCTTAA 60.046 61.111 0.00 0.00 0.00 1.85
900 1009 1.674322 GCTCGCTGGCCACCTTAAA 60.674 57.895 0.00 0.00 0.00 1.52
901 1010 1.032114 GCTCGCTGGCCACCTTAAAT 61.032 55.000 0.00 0.00 0.00 1.40
902 1011 1.017387 CTCGCTGGCCACCTTAAATC 58.983 55.000 0.00 0.00 0.00 2.17
903 1012 0.393808 TCGCTGGCCACCTTAAATCC 60.394 55.000 0.00 0.00 0.00 3.01
904 1013 1.384222 CGCTGGCCACCTTAAATCCC 61.384 60.000 0.00 0.00 0.00 3.85
905 1014 1.043116 GCTGGCCACCTTAAATCCCC 61.043 60.000 0.00 0.00 0.00 4.81
906 1015 0.334676 CTGGCCACCTTAAATCCCCA 59.665 55.000 0.00 0.00 0.00 4.96
907 1016 0.334676 TGGCCACCTTAAATCCCCAG 59.665 55.000 0.00 0.00 0.00 4.45
908 1017 0.397114 GGCCACCTTAAATCCCCAGG 60.397 60.000 0.00 0.00 0.00 4.45
909 1018 1.043116 GCCACCTTAAATCCCCAGGC 61.043 60.000 0.00 0.00 0.00 4.85
910 1019 0.751643 CCACCTTAAATCCCCAGGCG 60.752 60.000 0.00 0.00 0.00 5.52
911 1020 1.076995 ACCTTAAATCCCCAGGCGC 60.077 57.895 0.00 0.00 0.00 6.53
912 1021 1.828224 CCTTAAATCCCCAGGCGCC 60.828 63.158 21.89 21.89 0.00 6.53
913 1022 1.227383 CTTAAATCCCCAGGCGCCT 59.773 57.895 27.08 27.08 0.00 5.52
914 1023 0.819666 CTTAAATCCCCAGGCGCCTC 60.820 60.000 30.29 0.00 0.00 4.70
915 1024 2.279037 TTAAATCCCCAGGCGCCTCC 62.279 60.000 30.29 0.00 0.00 4.30
933 1042 4.806339 CCCTTCGCCTCCCCTCCT 62.806 72.222 0.00 0.00 0.00 3.69
934 1043 3.157949 CCTTCGCCTCCCCTCCTC 61.158 72.222 0.00 0.00 0.00 3.71
935 1044 3.532155 CTTCGCCTCCCCTCCTCG 61.532 72.222 0.00 0.00 0.00 4.63
963 1072 4.748144 CCCTGCAGCCCCCAGAAC 62.748 72.222 8.66 0.00 32.03 3.01
964 1073 4.748144 CCTGCAGCCCCCAGAACC 62.748 72.222 8.66 0.00 32.03 3.62
965 1074 3.655211 CTGCAGCCCCCAGAACCT 61.655 66.667 0.00 0.00 32.03 3.50
966 1075 3.635268 CTGCAGCCCCCAGAACCTC 62.635 68.421 0.00 0.00 32.03 3.85
967 1076 4.432741 GCAGCCCCCAGAACCTCC 62.433 72.222 0.00 0.00 0.00 4.30
968 1077 2.612115 CAGCCCCCAGAACCTCCT 60.612 66.667 0.00 0.00 0.00 3.69
969 1078 2.285743 AGCCCCCAGAACCTCCTC 60.286 66.667 0.00 0.00 0.00 3.71
970 1079 3.787001 GCCCCCAGAACCTCCTCG 61.787 72.222 0.00 0.00 0.00 4.63
971 1080 3.083997 CCCCCAGAACCTCCTCGG 61.084 72.222 0.00 0.00 39.35 4.63
1006 1115 3.866582 CCCCCGGGAGCATGTCTC 61.867 72.222 26.32 8.20 41.15 3.36
1007 1116 3.083349 CCCCGGGAGCATGTCTCA 61.083 66.667 26.32 0.00 43.70 3.27
1008 1117 2.187946 CCCGGGAGCATGTCTCAC 59.812 66.667 18.48 12.47 43.70 3.51
1009 1118 2.187946 CCGGGAGCATGTCTCACC 59.812 66.667 15.83 13.30 42.34 4.02
1010 1119 2.202797 CGGGAGCATGTCTCACCG 60.203 66.667 20.64 20.64 42.34 4.94
1011 1120 2.187946 GGGAGCATGTCTCACCGG 59.812 66.667 15.83 0.00 43.70 5.28
1012 1121 2.187946 GGAGCATGTCTCACCGGG 59.812 66.667 6.32 0.00 43.70 5.73
1013 1122 2.359169 GGAGCATGTCTCACCGGGA 61.359 63.158 6.32 0.00 43.70 5.14
1014 1123 1.142748 GAGCATGTCTCACCGGGAG 59.857 63.158 6.32 10.13 45.49 4.30
1104 1213 2.982130 CTGCCGAGCTACTGGGTT 59.018 61.111 0.00 0.00 31.81 4.11
1137 1246 4.187056 GGCAGCTCTACACCGAAC 57.813 61.111 0.00 0.00 0.00 3.95
1151 1260 2.202892 GAACCCGCGGTGAGGATC 60.203 66.667 26.12 9.06 35.34 3.36
1152 1261 2.683933 AACCCGCGGTGAGGATCT 60.684 61.111 26.12 0.00 35.34 2.75
1189 1298 3.138098 TCCATGGCTGTTTATAGATGGCA 59.862 43.478 6.96 0.00 37.59 4.92
1203 1312 2.093288 AGATGGCACTGTCGATCATGTT 60.093 45.455 0.00 0.00 0.00 2.71
1204 1313 3.132824 AGATGGCACTGTCGATCATGTTA 59.867 43.478 0.00 0.00 0.00 2.41
1205 1314 2.892374 TGGCACTGTCGATCATGTTAG 58.108 47.619 0.00 0.00 0.00 2.34
1206 1315 2.495669 TGGCACTGTCGATCATGTTAGA 59.504 45.455 0.00 0.00 0.00 2.10
1221 1331 6.792326 TCATGTTAGAGTAACCGTAGATGTG 58.208 40.000 0.00 0.00 37.88 3.21
1226 1336 7.340232 TGTTAGAGTAACCGTAGATGTGGTTAT 59.660 37.037 7.08 0.00 41.52 1.89
1227 1337 6.786967 AGAGTAACCGTAGATGTGGTTATT 57.213 37.500 7.08 3.34 41.52 1.40
1228 1338 7.886629 AGAGTAACCGTAGATGTGGTTATTA 57.113 36.000 7.08 0.00 41.52 0.98
1230 1340 8.921205 AGAGTAACCGTAGATGTGGTTATTAAT 58.079 33.333 7.08 0.00 41.52 1.40
1258 1368 4.776435 TGGATTAGATGCCACTGATCAA 57.224 40.909 0.00 1.41 35.51 2.57
1285 1395 6.037098 TCTGCTAACGAGAAGAGAAATTAGC 58.963 40.000 6.81 6.81 43.02 3.09
1289 1399 6.237701 GCTAACGAGAAGAGAAATTAGCACTG 60.238 42.308 8.52 0.00 42.52 3.66
1290 1400 3.929610 ACGAGAAGAGAAATTAGCACTGC 59.070 43.478 0.00 0.00 0.00 4.40
1307 1417 0.037697 TGCATCAGAACGTAACCGCT 60.038 50.000 0.00 0.00 37.70 5.52
1327 1437 3.560896 GCTGGTTGTGTTGCATTCATTTT 59.439 39.130 0.00 0.00 0.00 1.82
1332 1442 3.391965 TGTGTTGCATTCATTTTGGCTC 58.608 40.909 0.00 0.00 0.00 4.70
1349 1459 1.298859 CTCGTGCCTGCCTAACCAAC 61.299 60.000 0.00 0.00 0.00 3.77
1353 1463 0.676466 TGCCTGCCTAACCAACATCG 60.676 55.000 0.00 0.00 0.00 3.84
1390 1507 1.807165 CCACTGTCGATCCGTGCTG 60.807 63.158 0.00 0.00 31.43 4.41
1398 1515 1.204704 TCGATCCGTGCTGACTGAATT 59.795 47.619 0.00 0.00 0.00 2.17
1399 1516 1.325640 CGATCCGTGCTGACTGAATTG 59.674 52.381 0.00 0.00 0.00 2.32
1400 1517 2.350522 GATCCGTGCTGACTGAATTGT 58.649 47.619 0.00 0.00 0.00 2.71
1402 1519 2.143122 TCCGTGCTGACTGAATTGTTC 58.857 47.619 0.00 0.00 0.00 3.18
1403 1520 1.136252 CCGTGCTGACTGAATTGTTCG 60.136 52.381 0.00 0.00 0.00 3.95
1405 1522 2.032894 CGTGCTGACTGAATTGTTCGTT 60.033 45.455 0.00 0.00 0.00 3.85
1431 1549 5.241403 TCCACCATTAGTTGACTGTTCAT 57.759 39.130 0.00 0.00 0.00 2.57
1436 1554 5.156355 CCATTAGTTGACTGTTCATTGTGC 58.844 41.667 0.00 0.00 0.00 4.57
1457 1575 4.854361 CTGTGCTAGCAACATCAAGTAG 57.146 45.455 21.29 3.27 0.00 2.57
1462 1585 7.552459 TGTGCTAGCAACATCAAGTAGTAATA 58.448 34.615 21.29 0.00 0.00 0.98
1467 1590 9.619316 CTAGCAACATCAAGTAGTAATAGCTAG 57.381 37.037 0.00 0.00 40.15 3.42
1485 1608 8.988064 ATAGCTAGATTACCAAATGATACACG 57.012 34.615 0.00 0.00 0.00 4.49
1491 1616 1.939934 ACCAAATGATACACGATGCCG 59.060 47.619 0.00 0.00 42.50 5.69
1497 1622 1.681264 TGATACACGATGCCGATCTGT 59.319 47.619 0.00 0.00 39.50 3.41
1499 1624 0.527600 TACACGATGCCGATCTGTGC 60.528 55.000 0.00 0.00 36.97 4.57
1505 1630 0.541392 ATGCCGATCTGTGCCAGTTA 59.459 50.000 2.68 0.00 32.61 2.24
1506 1631 0.541392 TGCCGATCTGTGCCAGTTAT 59.459 50.000 2.68 0.00 32.61 1.89
1508 1633 2.169561 TGCCGATCTGTGCCAGTTATTA 59.830 45.455 2.68 0.00 32.61 0.98
1509 1634 2.544267 GCCGATCTGTGCCAGTTATTAC 59.456 50.000 2.68 0.00 32.61 1.89
1510 1635 3.741388 GCCGATCTGTGCCAGTTATTACT 60.741 47.826 2.68 0.00 32.61 2.24
1511 1636 4.442706 CCGATCTGTGCCAGTTATTACTT 58.557 43.478 2.68 0.00 32.61 2.24
1512 1637 5.597806 CCGATCTGTGCCAGTTATTACTTA 58.402 41.667 2.68 0.00 32.61 2.24
1513 1638 6.223852 CCGATCTGTGCCAGTTATTACTTAT 58.776 40.000 2.68 0.00 32.61 1.73
1514 1639 6.706270 CCGATCTGTGCCAGTTATTACTTATT 59.294 38.462 2.68 0.00 32.61 1.40
1515 1640 7.307396 CCGATCTGTGCCAGTTATTACTTATTG 60.307 40.741 2.68 0.00 32.61 1.90
1523 1648 6.345565 GCCAGTTATTACTTATTGCTCGTACG 60.346 42.308 9.53 9.53 30.26 3.67
1532 1657 7.997107 ACTTATTGCTCGTACGAAATGATAA 57.003 32.000 20.00 17.30 0.00 1.75
1563 1688 4.820716 AGATGCATCTGGTTTTGATCTAGC 59.179 41.667 28.21 0.00 35.42 3.42
1565 1690 3.943381 TGCATCTGGTTTTGATCTAGCAG 59.057 43.478 12.85 12.85 40.34 4.24
1570 1695 4.284490 TCTGGTTTTGATCTAGCAGACTGT 59.716 41.667 15.89 0.00 42.19 3.55
1591 1716 4.142249 TGTGTGTACCATGTTCTCCTATCG 60.142 45.833 0.00 0.00 0.00 2.92
1597 1722 3.326006 ACCATGTTCTCCTATCGCATCAT 59.674 43.478 0.00 0.00 0.00 2.45
1610 1735 3.198068 TCGCATCATTACTTTCTCCTGC 58.802 45.455 0.00 0.00 0.00 4.85
1614 1739 4.023365 GCATCATTACTTTCTCCTGCCATC 60.023 45.833 0.00 0.00 0.00 3.51
1619 1744 1.353694 ACTTTCTCCTGCCATCTTGCT 59.646 47.619 0.00 0.00 0.00 3.91
1620 1745 2.015587 CTTTCTCCTGCCATCTTGCTC 58.984 52.381 0.00 0.00 0.00 4.26
1621 1746 0.986527 TTCTCCTGCCATCTTGCTCA 59.013 50.000 0.00 0.00 0.00 4.26
1742 1867 0.250424 CACTGGAGTGCACCATGTCA 60.250 55.000 14.63 4.23 39.39 3.58
1753 1878 2.337583 CACCATGTCAGTAACTCCACG 58.662 52.381 0.00 0.00 0.00 4.94
1785 1910 3.010420 GCTTAGTTGGTCCATGGAGAAC 58.990 50.000 16.81 19.97 0.00 3.01
1810 1935 8.465999 ACATGTTTGAAGAATTTGTGTGTAGAA 58.534 29.630 0.00 0.00 0.00 2.10
1871 1996 7.377766 TGAAGACTTTGTAATGCATTACTCC 57.622 36.000 36.71 24.36 42.32 3.85
1876 2001 7.766278 AGACTTTGTAATGCATTACTCCACTAG 59.234 37.037 36.71 26.88 42.32 2.57
1883 2008 3.197766 TGCATTACTCCACTAGGAACTGG 59.802 47.826 0.00 0.00 45.19 4.00
1889 2014 2.436173 CTCCACTAGGAACTGGGAATCC 59.564 54.545 0.00 0.00 45.19 3.01
1897 2022 2.225017 GGAACTGGGAATCCTTTGGACA 60.225 50.000 0.00 0.00 32.98 4.02
1904 2029 5.588845 TGGGAATCCTTTGGACATGTTAAT 58.411 37.500 0.00 0.00 32.98 1.40
1957 2082 1.620822 AGGCAAATGGAGTCAACCAC 58.379 50.000 0.00 0.00 43.03 4.16
1992 2117 1.228063 CTCACTGCTGTTGGTGGCT 60.228 57.895 0.00 0.00 34.57 4.75
2009 2134 0.523519 GCTGGAGCAAAGTAGCAACC 59.476 55.000 0.00 0.00 41.59 3.77
2013 2138 0.796927 GAGCAAAGTAGCAACCGACC 59.203 55.000 0.00 0.00 36.85 4.79
2014 2139 0.949105 AGCAAAGTAGCAACCGACCG 60.949 55.000 0.00 0.00 36.85 4.79
2029 2154 0.526662 GACCGTCGAGTTGAGGTGAT 59.473 55.000 6.32 0.00 37.07 3.06
2031 2156 1.078759 CCGTCGAGTTGAGGTGATGC 61.079 60.000 0.00 0.00 0.00 3.91
2038 2163 0.535335 GTTGAGGTGATGCGACCCTA 59.465 55.000 0.00 0.00 36.56 3.53
2044 2169 1.134220 GGTGATGCGACCCTAATTCCA 60.134 52.381 0.00 0.00 0.00 3.53
2049 2174 4.041567 TGATGCGACCCTAATTCCACATAT 59.958 41.667 0.00 0.00 0.00 1.78
2057 2182 7.171678 CGACCCTAATTCCACATATTTTCTCTC 59.828 40.741 0.00 0.00 0.00 3.20
2058 2183 7.872138 ACCCTAATTCCACATATTTTCTCTCA 58.128 34.615 0.00 0.00 0.00 3.27
2070 2195 9.071276 ACATATTTTCTCTCATCTCTCTCTCTC 57.929 37.037 0.00 0.00 0.00 3.20
2073 2198 6.566079 TTTCTCTCATCTCTCTCTCTCTCT 57.434 41.667 0.00 0.00 0.00 3.10
2074 2199 5.798125 TCTCTCATCTCTCTCTCTCTCTC 57.202 47.826 0.00 0.00 0.00 3.20
2078 2203 5.901853 TCTCATCTCTCTCTCTCTCTCTCTT 59.098 44.000 0.00 0.00 0.00 2.85
2079 2204 5.922053 TCATCTCTCTCTCTCTCTCTCTTG 58.078 45.833 0.00 0.00 0.00 3.02
2080 2205 4.760530 TCTCTCTCTCTCTCTCTCTTGG 57.239 50.000 0.00 0.00 0.00 3.61
2081 2206 4.104086 TCTCTCTCTCTCTCTCTCTTGGT 58.896 47.826 0.00 0.00 0.00 3.67
2082 2207 4.162320 TCTCTCTCTCTCTCTCTCTTGGTC 59.838 50.000 0.00 0.00 0.00 4.02
2083 2208 3.199946 TCTCTCTCTCTCTCTCTTGGTCC 59.800 52.174 0.00 0.00 0.00 4.46
2121 2246 3.730761 CCTGCAGAACCGCTGTGC 61.731 66.667 17.39 0.00 46.62 4.57
2151 2276 1.613437 CCGCAACCAGTTTGAAGGAAT 59.387 47.619 0.00 0.00 37.39 3.01
2171 2296 1.371183 CGGAAGAAGGCTGTGGTGA 59.629 57.895 0.00 0.00 0.00 4.02
2173 2298 0.606673 GGAAGAAGGCTGTGGTGACC 60.607 60.000 0.00 0.00 0.00 4.02
2174 2299 0.108585 GAAGAAGGCTGTGGTGACCA 59.891 55.000 0.00 0.00 0.00 4.02
2176 2301 1.056700 AGAAGGCTGTGGTGACCAGT 61.057 55.000 3.58 0.00 32.34 4.00
2200 2325 1.296392 CCGCATCAGTGAACTCCCA 59.704 57.895 0.00 0.00 0.00 4.37
2203 2328 1.134580 CGCATCAGTGAACTCCCAGAT 60.135 52.381 0.00 0.00 0.00 2.90
2240 2365 2.281484 TCTCCTTGTTGCCGGTGC 60.281 61.111 1.90 0.00 38.26 5.01
2356 2481 2.125106 ACCAGCGCCGAGGATTTC 60.125 61.111 16.89 0.00 0.00 2.17
2380 2505 5.277974 CGACAAGTTTGTGAACCATCTCATT 60.278 40.000 1.62 0.00 42.43 2.57
2527 2652 4.074970 CTCTATTGTGCAAGGTTCAGGTT 58.925 43.478 0.00 0.00 0.00 3.50
2539 2664 6.739565 GCAAGGTTCAGGTTCTCAAAATCATT 60.740 38.462 0.00 0.00 0.00 2.57
3100 3225 6.569801 GCAACCCACAGTTTCTCTTATAAACC 60.570 42.308 0.00 0.00 36.18 3.27
3155 3282 7.543947 AACGCATACTTAAATAACCTGGTAC 57.456 36.000 0.00 0.00 0.00 3.34
3156 3283 6.881570 ACGCATACTTAAATAACCTGGTACT 58.118 36.000 0.00 0.00 0.00 2.73
3157 3284 7.333323 ACGCATACTTAAATAACCTGGTACTT 58.667 34.615 0.00 0.00 0.00 2.24
3158 3285 7.493645 ACGCATACTTAAATAACCTGGTACTTC 59.506 37.037 0.00 0.00 0.00 3.01
3371 3516 6.262944 ACTTCTCATTGCATGTCAAAACTACA 59.737 34.615 6.65 0.00 38.34 2.74
3437 3582 8.107095 AGCCCTTATAGTGTTGTTTTCTTGATA 58.893 33.333 0.00 0.00 0.00 2.15
3545 3691 7.672660 TGGATAGTTTAGAGACTTGAGGTGTAA 59.327 37.037 0.00 0.00 0.00 2.41
3551 3697 7.540474 TTAGAGACTTGAGGTGTAATTCTGT 57.460 36.000 0.00 0.00 0.00 3.41
3561 3707 7.453393 TGAGGTGTAATTCTGTGATCTTTCTT 58.547 34.615 0.00 0.00 0.00 2.52
3677 3823 5.767665 TGTACTTGTGCAATTTGTCCAGTAT 59.232 36.000 0.00 0.00 0.00 2.12
3844 3990 1.945394 TCGTAGCGACTGGGTAGATTC 59.055 52.381 0.00 0.00 0.00 2.52
3859 4005 4.581409 GGTAGATTCTCTGGACCACTCTAC 59.419 50.000 0.00 2.99 35.18 2.59
3914 4060 2.558359 ACTAAAATGGCTTGTGTCCTGC 59.442 45.455 0.00 0.00 0.00 4.85
3928 4074 4.887071 TGTGTCCTGCAGAATTTGTTAAGT 59.113 37.500 17.39 0.00 0.00 2.24
3979 4125 7.558161 TCGAATAGAGCAATCATTTTCATGT 57.442 32.000 0.00 0.00 0.00 3.21
3989 4135 6.455113 GCAATCATTTTCATGTGTGCATCTTC 60.455 38.462 0.00 0.00 39.29 2.87
4072 4218 6.950842 TGTGAAGATCATGACTAGAAATGGT 58.049 36.000 0.00 0.00 0.00 3.55
4127 4273 1.541588 CAAGGCCAGAAGGTTGTAAGC 59.458 52.381 5.01 0.00 37.19 3.09
4133 4279 4.072839 GCCAGAAGGTTGTAAGCTAACTT 58.927 43.478 0.00 0.00 35.34 2.66
4134 4280 5.243207 GCCAGAAGGTTGTAAGCTAACTTA 58.757 41.667 0.00 0.00 35.34 2.24
4135 4281 5.880887 GCCAGAAGGTTGTAAGCTAACTTAT 59.119 40.000 0.00 0.00 37.71 1.73
4136 4282 6.374613 GCCAGAAGGTTGTAAGCTAACTTATT 59.625 38.462 0.00 0.00 37.71 1.40
4137 4283 7.626452 GCCAGAAGGTTGTAAGCTAACTTATTG 60.626 40.741 0.00 0.00 37.71 1.90
4138 4284 7.148239 CCAGAAGGTTGTAAGCTAACTTATTGG 60.148 40.741 0.00 0.00 40.43 3.16
4139 4285 7.390718 CAGAAGGTTGTAAGCTAACTTATTGGT 59.609 37.037 0.00 0.00 40.43 3.67
4140 4286 7.390718 AGAAGGTTGTAAGCTAACTTATTGGTG 59.609 37.037 0.00 0.00 40.43 4.17
4141 4287 6.540083 AGGTTGTAAGCTAACTTATTGGTGT 58.460 36.000 0.00 0.00 40.43 4.16
4142 4288 7.002276 AGGTTGTAAGCTAACTTATTGGTGTT 58.998 34.615 0.00 0.00 40.43 3.32
4143 4289 7.174426 AGGTTGTAAGCTAACTTATTGGTGTTC 59.826 37.037 0.00 0.00 40.43 3.18
4144 4290 7.174426 GGTTGTAAGCTAACTTATTGGTGTTCT 59.826 37.037 0.00 0.00 40.43 3.01
4145 4291 8.565416 GTTGTAAGCTAACTTATTGGTGTTCTT 58.435 33.333 0.00 0.00 40.43 2.52
4146 4292 8.319143 TGTAAGCTAACTTATTGGTGTTCTTC 57.681 34.615 0.00 0.00 40.43 2.87
4147 4293 7.934665 TGTAAGCTAACTTATTGGTGTTCTTCA 59.065 33.333 0.00 0.00 40.43 3.02
4148 4294 8.947115 GTAAGCTAACTTATTGGTGTTCTTCAT 58.053 33.333 0.00 0.00 40.43 2.57
4149 4295 7.383102 AGCTAACTTATTGGTGTTCTTCATG 57.617 36.000 0.00 0.00 0.00 3.07
4150 4296 6.030228 GCTAACTTATTGGTGTTCTTCATGC 58.970 40.000 0.00 0.00 0.00 4.06
4151 4297 6.127897 GCTAACTTATTGGTGTTCTTCATGCT 60.128 38.462 0.00 0.00 0.00 3.79
4152 4298 6.655078 AACTTATTGGTGTTCTTCATGCTT 57.345 33.333 0.00 0.00 0.00 3.91
4153 4299 6.259550 ACTTATTGGTGTTCTTCATGCTTC 57.740 37.500 0.00 0.00 0.00 3.86
4154 4300 5.769662 ACTTATTGGTGTTCTTCATGCTTCA 59.230 36.000 0.00 0.00 0.00 3.02
4155 4301 6.435277 ACTTATTGGTGTTCTTCATGCTTCAT 59.565 34.615 0.00 0.00 0.00 2.57
4156 4302 7.611467 ACTTATTGGTGTTCTTCATGCTTCATA 59.389 33.333 0.00 0.00 0.00 2.15
4157 4303 5.627499 TTGGTGTTCTTCATGCTTCATAC 57.373 39.130 0.00 0.00 0.00 2.39
4158 4304 4.910195 TGGTGTTCTTCATGCTTCATACT 58.090 39.130 0.00 0.00 0.00 2.12
4159 4305 4.937620 TGGTGTTCTTCATGCTTCATACTC 59.062 41.667 0.00 0.00 0.00 2.59
4174 4320 6.127897 GCTTCATACTCCTTGCTTTTGTACAT 60.128 38.462 0.00 0.00 0.00 2.29
4186 4332 4.453819 GCTTTTGTACATCAGTTGCTCTCT 59.546 41.667 0.00 0.00 0.00 3.10
4187 4333 5.616424 GCTTTTGTACATCAGTTGCTCTCTG 60.616 44.000 0.00 0.00 0.00 3.35
4206 4396 4.588899 TCTGCTTTGCTTTTATGCTCCTA 58.411 39.130 0.00 0.00 0.00 2.94
4257 4449 8.974060 TCTCCTATTGTTGACTGTTTTAGTTT 57.026 30.769 0.00 0.00 40.53 2.66
4340 4534 0.664166 GCAAACCAACATGTCAGCCG 60.664 55.000 0.00 0.00 0.00 5.52
4344 4538 1.081242 CCAACATGTCAGCCGCAAC 60.081 57.895 0.00 0.00 0.00 4.17
4347 4541 0.250467 AACATGTCAGCCGCAACTCT 60.250 50.000 0.00 0.00 0.00 3.24
4369 4563 7.554476 ACTCTTAACTGAAAGCTGAGTCTTTTT 59.446 33.333 0.00 0.00 37.60 1.94
4371 4565 9.046296 TCTTAACTGAAAGCTGAGTCTTTTTAG 57.954 33.333 0.00 7.63 37.60 1.85
4383 4577 7.064016 GCTGAGTCTTTTTAGTATTGAGGTCTG 59.936 40.741 0.00 0.00 0.00 3.51
4384 4578 7.963532 TGAGTCTTTTTAGTATTGAGGTCTGT 58.036 34.615 0.00 0.00 0.00 3.41
4385 4579 8.088981 TGAGTCTTTTTAGTATTGAGGTCTGTC 58.911 37.037 0.00 0.00 0.00 3.51
4387 4581 8.429641 AGTCTTTTTAGTATTGAGGTCTGTCAA 58.570 33.333 0.00 0.00 40.68 3.18
4390 4584 7.921786 TTTTAGTATTGAGGTCTGTCAATGG 57.078 36.000 8.94 0.00 45.00 3.16
4391 4585 6.620877 TTAGTATTGAGGTCTGTCAATGGT 57.379 37.500 8.94 0.24 45.00 3.55
4392 4586 7.727578 TTAGTATTGAGGTCTGTCAATGGTA 57.272 36.000 8.94 0.00 45.00 3.25
4393 4587 5.978814 AGTATTGAGGTCTGTCAATGGTAC 58.021 41.667 8.94 0.92 45.00 3.34
4394 4588 4.908601 ATTGAGGTCTGTCAATGGTACA 57.091 40.909 0.00 0.00 43.97 2.90
4448 4642 4.706842 AAAGTTTCAGCTAACCTCCTGA 57.293 40.909 0.00 0.00 36.38 3.86
4456 4650 5.211973 TCAGCTAACCTCCTGATCTATGTT 58.788 41.667 0.00 0.00 33.44 2.71
4605 4801 7.487484 TGTTTTCAATTTTGTGCAGTCTATCA 58.513 30.769 0.00 0.00 0.00 2.15
4609 4805 7.692460 TCAATTTTGTGCAGTCTATCATCTT 57.308 32.000 0.00 0.00 0.00 2.40
4673 4869 5.298276 GGTGAAGACTAAATTGGTGTGTTGA 59.702 40.000 0.00 0.00 0.00 3.18
4684 4880 4.157849 TGGTGTGTTGAACCAGTGATAA 57.842 40.909 0.00 0.00 42.82 1.75
4689 4886 6.405397 GGTGTGTTGAACCAGTGATAAAAGTT 60.405 38.462 0.00 0.00 37.65 2.66
4690 4887 6.472163 GTGTGTTGAACCAGTGATAAAAGTTG 59.528 38.462 0.00 0.00 0.00 3.16
4694 4891 7.757624 TGTTGAACCAGTGATAAAAGTTGTTTC 59.242 33.333 0.00 0.00 0.00 2.78
4696 4893 7.831753 TGAACCAGTGATAAAAGTTGTTTCAA 58.168 30.769 0.00 0.00 0.00 2.69
4697 4894 7.973388 TGAACCAGTGATAAAAGTTGTTTCAAG 59.027 33.333 0.00 0.00 0.00 3.02
4699 4896 5.691754 CCAGTGATAAAAGTTGTTTCAAGCC 59.308 40.000 0.00 0.00 0.00 4.35
4831 5031 6.112734 TGGGCAGTATGTAAAGATGTTACTG 58.887 40.000 0.00 0.00 41.58 2.74
4834 5034 6.037172 GGCAGTATGTAAAGATGTTACTGGTG 59.963 42.308 9.63 0.00 39.91 4.17
4887 5088 1.066858 TCGTCAGGACCTTGAGCATTC 60.067 52.381 0.00 0.00 0.00 2.67
4894 5096 3.575687 AGGACCTTGAGCATTCCAAAAAG 59.424 43.478 0.00 0.00 0.00 2.27
4943 5145 3.248266 GCACAAGAAATGAGATGTTGGC 58.752 45.455 0.00 0.00 0.00 4.52
4944 5146 3.057033 GCACAAGAAATGAGATGTTGGCT 60.057 43.478 0.00 0.00 0.00 4.75
4969 5171 8.209802 TGAACCAGTAAGAAGGATTAGGTTAA 57.790 34.615 0.00 0.00 38.16 2.01
4970 5172 8.098912 TGAACCAGTAAGAAGGATTAGGTTAAC 58.901 37.037 0.00 0.00 38.16 2.01
4971 5173 6.955364 ACCAGTAAGAAGGATTAGGTTAACC 58.045 40.000 17.41 17.41 0.00 2.85
4972 5174 6.069789 ACCAGTAAGAAGGATTAGGTTAACCC 60.070 42.308 21.30 5.55 36.42 4.11
5001 6205 3.438781 GTCATCAATACAAACGCCTCCAA 59.561 43.478 0.00 0.00 0.00 3.53
5011 6215 2.031516 CGCCTCCAAGTCACTGCAG 61.032 63.158 13.48 13.48 0.00 4.41
5027 6231 1.106285 GCAGTGGAGCCCATTAAAGG 58.894 55.000 0.00 0.00 35.28 3.11
5040 6245 5.362717 GCCCATTAAAGGTAATAAGGTTGCT 59.637 40.000 0.00 0.00 30.19 3.91
5059 6264 6.372381 GGTTGCTTTAGATTTCCAAATTGCAT 59.628 34.615 0.00 0.00 0.00 3.96
5062 6267 7.160049 TGCTTTAGATTTCCAAATTGCATGAA 58.840 30.769 0.00 0.00 0.00 2.57
5063 6268 7.118101 TGCTTTAGATTTCCAAATTGCATGAAC 59.882 33.333 0.00 0.00 0.00 3.18
5077 6282 2.095567 GCATGAACACACTTAGCAGGTG 60.096 50.000 0.00 0.00 40.19 4.00
5094 6299 6.683974 GCAGGTGCTTTAGATTTTGATAGA 57.316 37.500 0.00 0.00 38.21 1.98
5095 6300 7.088589 GCAGGTGCTTTAGATTTTGATAGAA 57.911 36.000 0.00 0.00 38.21 2.10
5096 6301 7.710896 GCAGGTGCTTTAGATTTTGATAGAAT 58.289 34.615 0.00 0.00 38.21 2.40
5097 6302 7.646922 GCAGGTGCTTTAGATTTTGATAGAATG 59.353 37.037 0.00 0.00 38.21 2.67
5098 6303 8.133627 CAGGTGCTTTAGATTTTGATAGAATGG 58.866 37.037 0.00 0.00 0.00 3.16
5099 6304 7.836183 AGGTGCTTTAGATTTTGATAGAATGGT 59.164 33.333 0.00 0.00 0.00 3.55
5100 6305 9.120538 GGTGCTTTAGATTTTGATAGAATGGTA 57.879 33.333 0.00 0.00 0.00 3.25
5111 6316 1.501582 AGAATGGTAGACTCCCAGCC 58.498 55.000 0.00 0.00 34.92 4.85
5119 6324 1.122019 AGACTCCCAGCCGAACTGTT 61.122 55.000 0.00 0.00 45.68 3.16
5122 6327 0.895530 CTCCCAGCCGAACTGTTCTA 59.104 55.000 17.60 0.00 45.68 2.10
5123 6328 0.606604 TCCCAGCCGAACTGTTCTAC 59.393 55.000 17.60 9.71 45.68 2.59
5124 6329 0.320374 CCCAGCCGAACTGTTCTACA 59.680 55.000 17.60 0.00 45.68 2.74
5126 6331 1.000955 CCAGCCGAACTGTTCTACACT 59.999 52.381 17.60 7.19 45.68 3.55
5127 6332 2.548067 CCAGCCGAACTGTTCTACACTT 60.548 50.000 17.60 0.00 45.68 3.16
5128 6333 2.731976 CAGCCGAACTGTTCTACACTTC 59.268 50.000 17.60 0.65 41.86 3.01
5153 6381 9.679661 TCTACTACATTTATGCCATTTTTCTCA 57.320 29.630 0.00 0.00 0.00 3.27
5154 6382 9.941664 CTACTACATTTATGCCATTTTTCTCAG 57.058 33.333 0.00 0.00 0.00 3.35
5156 6384 6.610075 ACATTTATGCCATTTTTCTCAGGT 57.390 33.333 0.00 0.00 0.00 4.00
5169 6397 8.758715 CATTTTTCTCAGGTTCTCAATTTTCAC 58.241 33.333 0.00 0.00 0.00 3.18
5171 6399 4.398319 TCTCAGGTTCTCAATTTTCACCC 58.602 43.478 0.00 0.00 0.00 4.61
5234 6462 7.935520 TGTCACTTCTATGTTTGTGCATTTTA 58.064 30.769 0.00 0.00 0.00 1.52
5237 6465 9.979578 TCACTTCTATGTTTGTGCATTTTATTT 57.020 25.926 0.00 0.00 0.00 1.40
5285 6513 2.093890 TGCCTTGGCACTACATGAATG 58.906 47.619 10.65 0.00 0.00 2.67
5289 6517 3.119743 CCTTGGCACTACATGAATGTGTG 60.120 47.826 0.00 15.61 41.89 3.82
5298 6526 8.331539 CACTACATGAATGTGTGCATTTATTC 57.668 34.615 0.00 10.87 44.61 1.75
5317 6545 3.834489 TCTTGCTCCATCAGAATCCTC 57.166 47.619 0.00 0.00 0.00 3.71
5366 6594 6.729690 ATGTGGAAAACCAAAGAGATGAAA 57.270 33.333 0.00 0.00 0.00 2.69
5369 6597 7.563906 TGTGGAAAACCAAAGAGATGAAATTT 58.436 30.769 0.00 0.00 0.00 1.82
5370 6598 7.495279 TGTGGAAAACCAAAGAGATGAAATTTG 59.505 33.333 0.00 0.00 34.45 2.32
5453 6681 5.215252 TCAAAGTACAGGAGAGGTTTGAG 57.785 43.478 0.00 0.00 31.88 3.02
5587 6825 4.039366 AGAGAAGTGTTCACCCAAGTAGTC 59.961 45.833 0.00 0.00 0.00 2.59
5653 6891 4.778143 GTCGCCCGCAACCTCCAT 62.778 66.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 4.503296 CCTCGTCGGGATATGAATTTTCCT 60.503 45.833 0.00 0.00 0.00 3.36
333 336 2.360350 CCTCTGCGCCACCATGTT 60.360 61.111 4.18 0.00 0.00 2.71
389 414 1.330655 TAAGAAGGCGCTCCCTCCAG 61.331 60.000 7.64 0.00 45.62 3.86
435 464 2.795329 CCTAGTGTGCAGGAATGGTTT 58.205 47.619 0.00 0.00 34.91 3.27
440 469 1.221840 CGGCCTAGTGTGCAGGAAT 59.778 57.895 0.00 0.00 34.91 3.01
445 474 1.671054 GAAAGCGGCCTAGTGTGCA 60.671 57.895 0.00 0.00 0.00 4.57
450 503 3.408853 GGGGGAAAGCGGCCTAGT 61.409 66.667 0.00 0.00 0.00 2.57
501 556 4.208460 GCGCGTTTTAGATTATGTCAGCTA 59.792 41.667 8.43 0.00 0.00 3.32
511 600 4.737601 GCGTGCGCGTTTTAGATT 57.262 50.000 22.18 0.00 40.81 2.40
558 654 3.488778 TTTAGTTTTGGGTCGGCAGTA 57.511 42.857 0.00 0.00 0.00 2.74
601 707 1.021202 TTTGTCTGTTTGGGTCAGCG 58.979 50.000 0.00 0.00 33.48 5.18
604 710 2.828520 TGCTTTTTGTCTGTTTGGGTCA 59.171 40.909 0.00 0.00 0.00 4.02
625 731 5.838531 TTAAATGGACGGTGTTTTTGTCT 57.161 34.783 0.00 0.00 33.21 3.41
646 755 1.069227 GCAACTTCAACGAGCCGATTT 60.069 47.619 1.50 0.00 0.00 2.17
647 756 0.517316 GCAACTTCAACGAGCCGATT 59.483 50.000 1.50 0.00 0.00 3.34
690 799 3.876589 TTCGTGGGCTTCTCGTGGC 62.877 63.158 0.00 0.00 34.40 5.01
691 800 1.738099 CTTCGTGGGCTTCTCGTGG 60.738 63.158 0.00 0.00 34.40 4.94
692 801 1.738099 CCTTCGTGGGCTTCTCGTG 60.738 63.158 0.00 0.00 34.40 4.35
693 802 1.906824 TCCTTCGTGGGCTTCTCGT 60.907 57.895 0.00 0.00 36.20 4.18
694 803 1.446272 GTCCTTCGTGGGCTTCTCG 60.446 63.158 0.00 0.00 37.49 4.04
695 804 1.079057 GGTCCTTCGTGGGCTTCTC 60.079 63.158 2.35 0.00 41.10 2.87
696 805 1.415672 TTGGTCCTTCGTGGGCTTCT 61.416 55.000 2.35 0.00 41.10 2.85
697 806 0.536460 TTTGGTCCTTCGTGGGCTTC 60.536 55.000 2.35 0.00 41.10 3.86
698 807 0.537371 CTTTGGTCCTTCGTGGGCTT 60.537 55.000 2.35 0.00 41.10 4.35
699 808 1.073199 CTTTGGTCCTTCGTGGGCT 59.927 57.895 2.35 0.00 41.10 5.19
700 809 2.626780 GCTTTGGTCCTTCGTGGGC 61.627 63.158 0.00 0.00 40.45 5.36
701 810 1.971695 GGCTTTGGTCCTTCGTGGG 60.972 63.158 0.00 0.00 36.20 4.61
702 811 1.971695 GGGCTTTGGTCCTTCGTGG 60.972 63.158 0.00 0.00 33.70 4.94
703 812 2.325082 CGGGCTTTGGTCCTTCGTG 61.325 63.158 0.00 0.00 34.49 4.35
704 813 2.032071 CGGGCTTTGGTCCTTCGT 59.968 61.111 0.00 0.00 34.49 3.85
705 814 2.032071 ACGGGCTTTGGTCCTTCG 59.968 61.111 0.00 0.00 34.49 3.79
706 815 2.626780 GCACGGGCTTTGGTCCTTC 61.627 63.158 0.00 0.00 34.49 3.46
707 816 2.597510 GCACGGGCTTTGGTCCTT 60.598 61.111 0.00 0.00 34.49 3.36
717 826 4.143363 GTTACGAAGCGCACGGGC 62.143 66.667 25.17 0.00 34.93 6.13
718 827 3.484547 GGTTACGAAGCGCACGGG 61.485 66.667 25.17 8.74 34.93 5.28
719 828 2.735478 TGGTTACGAAGCGCACGG 60.735 61.111 25.17 10.41 34.93 4.94
720 829 2.468532 GTGGTTACGAAGCGCACG 59.531 61.111 21.44 21.44 39.11 5.34
721 830 1.957186 TGGTGGTTACGAAGCGCAC 60.957 57.895 11.47 1.68 40.94 5.34
722 831 1.957186 GTGGTGGTTACGAAGCGCA 60.957 57.895 11.47 0.00 40.94 6.09
723 832 2.674084 GGTGGTGGTTACGAAGCGC 61.674 63.158 0.00 0.00 38.59 5.92
724 833 1.289109 CTGGTGGTGGTTACGAAGCG 61.289 60.000 0.00 0.00 0.00 4.68
725 834 0.953960 CCTGGTGGTGGTTACGAAGC 60.954 60.000 0.00 0.00 0.00 3.86
726 835 0.953960 GCCTGGTGGTGGTTACGAAG 60.954 60.000 0.00 0.00 35.27 3.79
727 836 1.071814 GCCTGGTGGTGGTTACGAA 59.928 57.895 0.00 0.00 35.27 3.85
728 837 2.745037 GCCTGGTGGTGGTTACGA 59.255 61.111 0.00 0.00 35.27 3.43
729 838 2.740826 CGCCTGGTGGTGGTTACG 60.741 66.667 0.00 0.00 40.05 3.18
737 846 2.869503 ATTAACTCGCCGCCTGGTGG 62.870 60.000 22.07 22.07 46.22 4.61
739 848 1.024579 CAATTAACTCGCCGCCTGGT 61.025 55.000 0.00 0.00 37.67 4.00
740 849 0.742990 TCAATTAACTCGCCGCCTGG 60.743 55.000 0.00 0.00 38.77 4.45
741 850 0.373716 GTCAATTAACTCGCCGCCTG 59.626 55.000 0.00 0.00 0.00 4.85
742 851 0.036765 TGTCAATTAACTCGCCGCCT 60.037 50.000 0.00 0.00 0.00 5.52
743 852 0.373716 CTGTCAATTAACTCGCCGCC 59.626 55.000 0.00 0.00 0.00 6.13
744 853 1.060698 GTCTGTCAATTAACTCGCCGC 59.939 52.381 0.00 0.00 0.00 6.53
745 854 2.333926 TGTCTGTCAATTAACTCGCCG 58.666 47.619 0.00 0.00 0.00 6.46
746 855 3.000322 CGATGTCTGTCAATTAACTCGCC 60.000 47.826 0.00 0.00 0.00 5.54
747 856 3.542291 GCGATGTCTGTCAATTAACTCGC 60.542 47.826 0.00 0.00 41.51 5.03
748 857 3.301197 CGCGATGTCTGTCAATTAACTCG 60.301 47.826 0.00 0.00 0.00 4.18
749 858 3.000322 CCGCGATGTCTGTCAATTAACTC 60.000 47.826 8.23 0.00 0.00 3.01
750 859 2.930040 CCGCGATGTCTGTCAATTAACT 59.070 45.455 8.23 0.00 0.00 2.24
751 860 2.671396 ACCGCGATGTCTGTCAATTAAC 59.329 45.455 8.23 0.00 0.00 2.01
752 861 2.927477 GACCGCGATGTCTGTCAATTAA 59.073 45.455 8.23 0.00 32.39 1.40
753 862 2.536365 GACCGCGATGTCTGTCAATTA 58.464 47.619 8.23 0.00 32.39 1.40
754 863 1.359848 GACCGCGATGTCTGTCAATT 58.640 50.000 8.23 0.00 32.39 2.32
755 864 0.460284 GGACCGCGATGTCTGTCAAT 60.460 55.000 8.23 0.00 35.54 2.57
756 865 1.080093 GGACCGCGATGTCTGTCAA 60.080 57.895 8.23 0.00 35.54 3.18
757 866 2.571757 GGACCGCGATGTCTGTCA 59.428 61.111 8.23 0.00 35.54 3.58
758 867 2.202756 GGGACCGCGATGTCTGTC 60.203 66.667 8.23 4.82 35.54 3.51
759 868 4.129737 CGGGACCGCGATGTCTGT 62.130 66.667 8.23 0.00 35.54 3.41
760 869 4.129737 ACGGGACCGCGATGTCTG 62.130 66.667 8.23 7.18 44.19 3.51
761 870 4.129737 CACGGGACCGCGATGTCT 62.130 66.667 8.23 0.00 44.19 3.41
770 879 3.119096 GAAGAAGCGCACGGGACC 61.119 66.667 11.47 0.00 0.00 4.46
771 880 3.119096 GGAAGAAGCGCACGGGAC 61.119 66.667 11.47 0.00 0.00 4.46
772 881 3.311110 AGGAAGAAGCGCACGGGA 61.311 61.111 11.47 0.00 0.00 5.14
773 882 3.121030 CAGGAAGAAGCGCACGGG 61.121 66.667 11.47 0.00 0.00 5.28
774 883 3.793144 GCAGGAAGAAGCGCACGG 61.793 66.667 11.47 0.00 0.00 4.94
775 884 3.793144 GGCAGGAAGAAGCGCACG 61.793 66.667 11.47 0.00 0.00 5.34
776 885 2.359230 AGGCAGGAAGAAGCGCAC 60.359 61.111 11.47 2.78 0.00 5.34
777 886 2.046892 GAGGCAGGAAGAAGCGCA 60.047 61.111 11.47 0.00 0.00 6.09
778 887 2.821810 GGAGGCAGGAAGAAGCGC 60.822 66.667 0.00 0.00 0.00 5.92
779 888 2.124942 GGGAGGCAGGAAGAAGCG 60.125 66.667 0.00 0.00 0.00 4.68
780 889 2.273776 GGGGAGGCAGGAAGAAGC 59.726 66.667 0.00 0.00 0.00 3.86
781 890 1.500783 TTGGGGGAGGCAGGAAGAAG 61.501 60.000 0.00 0.00 0.00 2.85
782 891 1.071314 TTTGGGGGAGGCAGGAAGAA 61.071 55.000 0.00 0.00 0.00 2.52
783 892 0.850883 ATTTGGGGGAGGCAGGAAGA 60.851 55.000 0.00 0.00 0.00 2.87
784 893 0.041684 AATTTGGGGGAGGCAGGAAG 59.958 55.000 0.00 0.00 0.00 3.46
785 894 0.491371 AAATTTGGGGGAGGCAGGAA 59.509 50.000 0.00 0.00 0.00 3.36
786 895 0.041090 GAAATTTGGGGGAGGCAGGA 59.959 55.000 0.00 0.00 0.00 3.86
787 896 0.977627 GGAAATTTGGGGGAGGCAGG 60.978 60.000 0.00 0.00 0.00 4.85
788 897 0.977627 GGGAAATTTGGGGGAGGCAG 60.978 60.000 0.00 0.00 0.00 4.85
789 898 1.080170 GGGAAATTTGGGGGAGGCA 59.920 57.895 0.00 0.00 0.00 4.75
790 899 1.689233 GGGGAAATTTGGGGGAGGC 60.689 63.158 0.00 0.00 0.00 4.70
791 900 1.381191 CGGGGAAATTTGGGGGAGG 60.381 63.158 0.00 0.00 0.00 4.30
792 901 2.058001 GCGGGGAAATTTGGGGGAG 61.058 63.158 0.00 0.00 0.00 4.30
793 902 2.038168 GCGGGGAAATTTGGGGGA 59.962 61.111 0.00 0.00 0.00 4.81
794 903 2.038813 AGCGGGGAAATTTGGGGG 59.961 61.111 0.00 0.00 0.00 5.40
795 904 2.058001 GGAGCGGGGAAATTTGGGG 61.058 63.158 0.00 0.00 0.00 4.96
796 905 2.058001 GGGAGCGGGGAAATTTGGG 61.058 63.158 0.00 0.00 0.00 4.12
797 906 2.414785 CGGGAGCGGGGAAATTTGG 61.415 63.158 0.00 0.00 0.00 3.28
798 907 3.196648 CGGGAGCGGGGAAATTTG 58.803 61.111 0.00 0.00 0.00 2.32
819 928 3.262686 GAAGGGGACGAATCGCGC 61.263 66.667 0.00 0.00 46.04 6.86
821 930 2.203029 GGGAAGGGGACGAATCGC 60.203 66.667 1.15 0.00 37.06 4.58
822 931 2.504519 GGGGAAGGGGACGAATCG 59.495 66.667 0.00 0.00 0.00 3.34
823 932 2.504519 CGGGGAAGGGGACGAATC 59.495 66.667 0.00 0.00 0.00 2.52
824 933 3.793888 GCGGGGAAGGGGACGAAT 61.794 66.667 0.00 0.00 0.00 3.34
828 937 3.296842 ATTTGGCGGGGAAGGGGAC 62.297 63.158 0.00 0.00 0.00 4.46
829 938 2.944390 ATTTGGCGGGGAAGGGGA 60.944 61.111 0.00 0.00 0.00 4.81
830 939 2.442087 GATTTGGCGGGGAAGGGG 60.442 66.667 0.00 0.00 0.00 4.79
831 940 2.442087 GGATTTGGCGGGGAAGGG 60.442 66.667 0.00 0.00 0.00 3.95
832 941 2.442087 GGGATTTGGCGGGGAAGG 60.442 66.667 0.00 0.00 0.00 3.46
833 942 2.828549 CGGGATTTGGCGGGGAAG 60.829 66.667 0.00 0.00 0.00 3.46
861 970 4.016706 AGGTCGCGGGAGGTTTGG 62.017 66.667 6.13 0.00 0.00 3.28
862 971 2.742372 CAGGTCGCGGGAGGTTTG 60.742 66.667 6.13 0.00 0.00 2.93
863 972 4.699522 GCAGGTCGCGGGAGGTTT 62.700 66.667 6.13 0.00 0.00 3.27
882 991 1.032114 ATTTAAGGTGGCCAGCGAGC 61.032 55.000 28.24 5.42 0.00 5.03
883 992 1.017387 GATTTAAGGTGGCCAGCGAG 58.983 55.000 28.24 0.00 0.00 5.03
884 993 0.393808 GGATTTAAGGTGGCCAGCGA 60.394 55.000 28.24 18.10 0.00 4.93
885 994 1.384222 GGGATTTAAGGTGGCCAGCG 61.384 60.000 28.24 0.00 0.00 5.18
886 995 1.043116 GGGGATTTAAGGTGGCCAGC 61.043 60.000 27.66 27.66 0.00 4.85
887 996 0.334676 TGGGGATTTAAGGTGGCCAG 59.665 55.000 5.11 0.00 0.00 4.85
888 997 0.334676 CTGGGGATTTAAGGTGGCCA 59.665 55.000 0.00 0.00 0.00 5.36
889 998 0.397114 CCTGGGGATTTAAGGTGGCC 60.397 60.000 0.00 0.00 0.00 5.36
890 999 1.043116 GCCTGGGGATTTAAGGTGGC 61.043 60.000 0.00 0.00 33.34 5.01
891 1000 0.751643 CGCCTGGGGATTTAAGGTGG 60.752 60.000 4.46 0.00 37.84 4.61
892 1001 1.384222 GCGCCTGGGGATTTAAGGTG 61.384 60.000 15.77 0.00 43.17 4.00
893 1002 1.076995 GCGCCTGGGGATTTAAGGT 60.077 57.895 15.77 0.00 33.34 3.50
894 1003 1.828224 GGCGCCTGGGGATTTAAGG 60.828 63.158 22.15 0.00 0.00 2.69
895 1004 0.819666 GAGGCGCCTGGGGATTTAAG 60.820 60.000 38.41 0.00 0.00 1.85
896 1005 1.226262 GAGGCGCCTGGGGATTTAA 59.774 57.895 38.41 0.00 0.00 1.52
897 1006 2.752807 GGAGGCGCCTGGGGATTTA 61.753 63.158 38.41 0.00 0.00 1.40
898 1007 4.129148 GGAGGCGCCTGGGGATTT 62.129 66.667 38.41 7.08 0.00 2.17
916 1025 4.806339 AGGAGGGGAGGCGAAGGG 62.806 72.222 0.00 0.00 0.00 3.95
917 1026 3.157949 GAGGAGGGGAGGCGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
918 1027 3.532155 CGAGGAGGGGAGGCGAAG 61.532 72.222 0.00 0.00 0.00 3.79
946 1055 4.748144 GTTCTGGGGGCTGCAGGG 62.748 72.222 17.12 0.00 0.00 4.45
947 1056 4.748144 GGTTCTGGGGGCTGCAGG 62.748 72.222 17.12 0.00 0.00 4.85
948 1057 3.635268 GAGGTTCTGGGGGCTGCAG 62.635 68.421 10.11 10.11 0.00 4.41
949 1058 3.650950 GAGGTTCTGGGGGCTGCA 61.651 66.667 0.50 0.00 0.00 4.41
950 1059 4.432741 GGAGGTTCTGGGGGCTGC 62.433 72.222 0.00 0.00 0.00 5.25
951 1060 2.612115 AGGAGGTTCTGGGGGCTG 60.612 66.667 0.00 0.00 0.00 4.85
952 1061 2.285743 GAGGAGGTTCTGGGGGCT 60.286 66.667 0.00 0.00 0.00 5.19
953 1062 3.787001 CGAGGAGGTTCTGGGGGC 61.787 72.222 0.00 0.00 0.00 5.80
954 1063 3.083997 CCGAGGAGGTTCTGGGGG 61.084 72.222 0.00 0.00 34.51 5.40
989 1098 3.866582 GAGACATGCTCCCGGGGG 61.867 72.222 23.50 21.45 37.69 5.40
990 1099 3.083349 TGAGACATGCTCCCGGGG 61.083 66.667 23.50 13.02 43.26 5.73
991 1100 2.187946 GTGAGACATGCTCCCGGG 59.812 66.667 16.85 16.85 43.26 5.73
992 1101 2.187946 GGTGAGACATGCTCCCGG 59.812 66.667 12.62 0.00 43.26 5.73
993 1102 2.202797 CGGTGAGACATGCTCCCG 60.203 66.667 20.64 20.64 44.83 5.14
994 1103 2.187946 CCGGTGAGACATGCTCCC 59.812 66.667 12.62 11.85 43.26 4.30
995 1104 2.187946 CCCGGTGAGACATGCTCC 59.812 66.667 0.00 6.11 43.26 4.70
996 1105 1.142748 CTCCCGGTGAGACATGCTC 59.857 63.158 13.05 9.41 44.42 4.26
997 1106 1.305297 TCTCCCGGTGAGACATGCT 60.305 57.895 16.04 0.00 45.29 3.79
998 1107 3.298958 TCTCCCGGTGAGACATGC 58.701 61.111 16.04 0.00 45.29 4.06
1034 1143 1.143183 GCTTGACGATCCGCCCTTA 59.857 57.895 0.00 0.00 0.00 2.69
1089 1198 1.448013 GTGAACCCAGTAGCTCGGC 60.448 63.158 0.00 0.00 0.00 5.54
1137 1246 3.144120 CTCAGATCCTCACCGCGGG 62.144 68.421 31.76 18.67 0.00 6.13
1151 1260 2.723322 TGGAATGGAGGATTGCTCAG 57.277 50.000 7.53 0.00 33.62 3.35
1152 1261 2.940158 CATGGAATGGAGGATTGCTCA 58.060 47.619 7.53 0.00 41.79 4.26
1179 1288 4.524328 ACATGATCGACAGTGCCATCTATA 59.476 41.667 0.00 0.00 0.00 1.31
1189 1298 5.448768 CGGTTACTCTAACATGATCGACAGT 60.449 44.000 0.00 0.00 40.39 3.55
1238 1348 6.489361 AGAATTTGATCAGTGGCATCTAATCC 59.511 38.462 0.00 0.00 29.08 3.01
1258 1368 7.913674 AATTTCTCTTCTCGTTAGCAGAATT 57.086 32.000 0.00 0.00 0.00 2.17
1285 1395 1.390123 CGGTTACGTTCTGATGCAGTG 59.610 52.381 0.00 0.00 34.81 3.66
1289 1399 0.370273 CAGCGGTTACGTTCTGATGC 59.630 55.000 0.00 0.00 43.45 3.91
1290 1400 0.999406 CCAGCGGTTACGTTCTGATG 59.001 55.000 0.00 1.64 43.45 3.07
1307 1417 3.875727 CCAAAATGAATGCAACACAACCA 59.124 39.130 0.00 0.00 0.00 3.67
1332 1442 0.960364 ATGTTGGTTAGGCAGGCACG 60.960 55.000 0.00 0.00 0.00 5.34
1377 1490 0.109272 TTCAGTCAGCACGGATCGAC 60.109 55.000 0.00 0.00 0.00 4.20
1390 1507 3.751175 TGGATGGAACGAACAATTCAGTC 59.249 43.478 0.00 0.00 0.00 3.51
1398 1515 2.577606 AATGGTGGATGGAACGAACA 57.422 45.000 0.00 0.00 0.00 3.18
1399 1516 3.606687 ACTAATGGTGGATGGAACGAAC 58.393 45.455 0.00 0.00 0.00 3.95
1400 1517 3.992943 ACTAATGGTGGATGGAACGAA 57.007 42.857 0.00 0.00 0.00 3.85
1402 1519 3.374058 GTCAACTAATGGTGGATGGAACG 59.626 47.826 0.00 0.00 29.56 3.95
1403 1520 4.396166 CAGTCAACTAATGGTGGATGGAAC 59.604 45.833 0.00 0.00 29.56 3.62
1405 1522 3.587061 ACAGTCAACTAATGGTGGATGGA 59.413 43.478 0.00 0.00 29.56 3.41
1436 1554 4.248859 ACTACTTGATGTTGCTAGCACAG 58.751 43.478 19.17 9.04 0.00 3.66
1462 1585 7.050970 TCGTGTATCATTTGGTAATCTAGCT 57.949 36.000 0.00 0.00 0.00 3.32
1467 1590 5.614668 CGGCATCGTGTATCATTTGGTAATC 60.615 44.000 0.00 0.00 0.00 1.75
1474 1597 3.742882 CAGATCGGCATCGTGTATCATTT 59.257 43.478 0.00 0.00 37.69 2.32
1475 1598 3.243873 ACAGATCGGCATCGTGTATCATT 60.244 43.478 0.00 0.00 37.69 2.57
1476 1599 2.297315 ACAGATCGGCATCGTGTATCAT 59.703 45.455 0.00 0.00 37.69 2.45
1497 1622 5.424757 ACGAGCAATAAGTAATAACTGGCA 58.575 37.500 0.00 0.00 35.62 4.92
1499 1624 6.914215 TCGTACGAGCAATAAGTAATAACTGG 59.086 38.462 15.28 0.00 35.62 4.00
1505 1630 7.997107 TCATTTCGTACGAGCAATAAGTAAT 57.003 32.000 18.64 8.95 0.00 1.89
1506 1631 7.997107 ATCATTTCGTACGAGCAATAAGTAA 57.003 32.000 18.64 6.88 0.00 2.24
1508 1633 7.997107 TTATCATTTCGTACGAGCAATAAGT 57.003 32.000 18.64 8.07 0.00 2.24
1509 1634 7.792508 GGTTTATCATTTCGTACGAGCAATAAG 59.207 37.037 18.64 5.97 0.00 1.73
1510 1635 7.278203 TGGTTTATCATTTCGTACGAGCAATAA 59.722 33.333 18.64 16.23 0.00 1.40
1511 1636 6.757478 TGGTTTATCATTTCGTACGAGCAATA 59.243 34.615 18.64 11.75 0.00 1.90
1512 1637 5.583061 TGGTTTATCATTTCGTACGAGCAAT 59.417 36.000 18.64 13.28 0.00 3.56
1513 1638 4.930405 TGGTTTATCATTTCGTACGAGCAA 59.070 37.500 18.64 11.42 0.00 3.91
1514 1639 4.496360 TGGTTTATCATTTCGTACGAGCA 58.504 39.130 18.64 9.82 0.00 4.26
1515 1640 5.432157 CATGGTTTATCATTTCGTACGAGC 58.568 41.667 18.64 4.13 0.00 5.03
1555 1680 3.444034 GGTACACACAGTCTGCTAGATCA 59.556 47.826 0.00 0.00 0.00 2.92
1570 1695 6.908481 ATGCGATAGGAGAACATGGTACACA 61.908 44.000 0.00 0.00 41.57 3.72
1591 1716 3.282021 TGGCAGGAGAAAGTAATGATGC 58.718 45.455 0.00 0.00 0.00 3.91
1597 1722 3.009473 AGCAAGATGGCAGGAGAAAGTAA 59.991 43.478 0.00 0.00 35.83 2.24
1610 1735 7.092079 TGTAATGATTTTTGTGAGCAAGATGG 58.908 34.615 0.00 0.00 35.82 3.51
1638 1763 3.559655 CGTCACTTCTCACATGGTTCAAA 59.440 43.478 0.00 0.00 0.00 2.69
1639 1764 3.130633 CGTCACTTCTCACATGGTTCAA 58.869 45.455 0.00 0.00 0.00 2.69
1671 1796 1.536940 TCATTGGATGCATATGCCCG 58.463 50.000 24.54 7.49 41.18 6.13
1673 1798 2.561419 AGCTTCATTGGATGCATATGCC 59.439 45.455 24.54 10.19 44.33 4.40
1702 1827 4.442733 GTGCTTAGCAAGAAGATAGCTACG 59.557 45.833 9.05 0.00 41.47 3.51
1742 1867 3.090037 ACATAGCTGACGTGGAGTTACT 58.910 45.455 0.00 0.00 0.00 2.24
1785 1910 8.854979 TTCTACACACAAATTCTTCAAACATG 57.145 30.769 0.00 0.00 0.00 3.21
1827 1952 9.424319 GTCTTCAACATGAGTCAAGTAAGAATA 57.576 33.333 12.84 6.49 0.00 1.75
1840 1965 6.671190 TGCATTACAAAGTCTTCAACATGAG 58.329 36.000 0.00 0.00 0.00 2.90
1843 1968 8.796475 AGTAATGCATTACAAAGTCTTCAACAT 58.204 29.630 37.95 18.25 43.83 2.71
1848 1973 7.119846 AGTGGAGTAATGCATTACAAAGTCTTC 59.880 37.037 37.95 27.52 43.83 2.87
1871 1996 4.265073 CAAAGGATTCCCAGTTCCTAGTG 58.735 47.826 0.00 0.00 41.58 2.74
1876 2001 2.225017 TGTCCAAAGGATTCCCAGTTCC 60.225 50.000 0.00 0.00 32.73 3.62
1883 2008 6.830838 AGAGATTAACATGTCCAAAGGATTCC 59.169 38.462 0.00 0.00 32.73 3.01
1904 2029 7.592938 CAGCAAACCATTGTTACAATAAGAGA 58.407 34.615 10.46 0.00 38.85 3.10
1957 2082 3.444742 AGTGAGAGAGCAAGATGACTCAG 59.555 47.826 0.00 0.00 35.55 3.35
1967 2092 1.541889 CCAACAGCAGTGAGAGAGCAA 60.542 52.381 0.00 0.00 0.00 3.91
1992 2117 0.394938 TCGGTTGCTACTTTGCTCCA 59.605 50.000 0.00 0.00 0.00 3.86
2009 2134 1.442184 CACCTCAACTCGACGGTCG 60.442 63.158 23.73 23.73 42.10 4.79
2013 2138 1.406219 CGCATCACCTCAACTCGACG 61.406 60.000 0.00 0.00 0.00 5.12
2014 2139 0.109272 TCGCATCACCTCAACTCGAC 60.109 55.000 0.00 0.00 0.00 4.20
2029 2154 4.431416 AATATGTGGAATTAGGGTCGCA 57.569 40.909 0.00 0.00 0.00 5.10
2031 2156 6.992715 AGAGAAAATATGTGGAATTAGGGTCG 59.007 38.462 0.00 0.00 0.00 4.79
2038 2163 9.558396 GAGAGATGAGAGAAAATATGTGGAATT 57.442 33.333 0.00 0.00 0.00 2.17
2044 2169 9.071276 GAGAGAGAGAGATGAGAGAAAATATGT 57.929 37.037 0.00 0.00 0.00 2.29
2049 2174 6.962182 AGAGAGAGAGAGAGATGAGAGAAAA 58.038 40.000 0.00 0.00 0.00 2.29
2057 2182 5.061853 CCAAGAGAGAGAGAGAGAGAGATG 58.938 50.000 0.00 0.00 0.00 2.90
2058 2183 4.723789 ACCAAGAGAGAGAGAGAGAGAGAT 59.276 45.833 0.00 0.00 0.00 2.75
2070 2195 0.823460 GAGCAGGGACCAAGAGAGAG 59.177 60.000 0.00 0.00 0.00 3.20
2073 2198 1.661463 AATGAGCAGGGACCAAGAGA 58.339 50.000 0.00 0.00 0.00 3.10
2074 2199 3.853355 ATAATGAGCAGGGACCAAGAG 57.147 47.619 0.00 0.00 0.00 2.85
2078 2203 4.272489 CAGAAAATAATGAGCAGGGACCA 58.728 43.478 0.00 0.00 0.00 4.02
2079 2204 3.633986 CCAGAAAATAATGAGCAGGGACC 59.366 47.826 0.00 0.00 0.00 4.46
2080 2205 3.067320 GCCAGAAAATAATGAGCAGGGAC 59.933 47.826 0.00 0.00 0.00 4.46
2081 2206 3.053395 AGCCAGAAAATAATGAGCAGGGA 60.053 43.478 0.00 0.00 0.00 4.20
2082 2207 3.294214 AGCCAGAAAATAATGAGCAGGG 58.706 45.455 0.00 0.00 0.00 4.45
2083 2208 3.317430 GGAGCCAGAAAATAATGAGCAGG 59.683 47.826 0.00 0.00 0.00 4.85
2133 2258 2.407090 GCATTCCTTCAAACTGGTTGC 58.593 47.619 0.00 0.00 37.13 4.17
2151 2276 2.032528 CCACAGCCTTCTTCCGCA 59.967 61.111 0.00 0.00 0.00 5.69
2171 2296 1.892819 CTGATGCGGTCCTCACTGGT 61.893 60.000 0.00 0.00 37.07 4.00
2173 2298 0.738762 CACTGATGCGGTCCTCACTG 60.739 60.000 0.00 0.00 0.00 3.66
2174 2299 0.900182 TCACTGATGCGGTCCTCACT 60.900 55.000 0.00 0.00 0.00 3.41
2176 2301 0.037326 GTTCACTGATGCGGTCCTCA 60.037 55.000 0.00 0.00 0.00 3.86
2200 2325 0.545171 CATGGTGGAGGAGCACATCT 59.455 55.000 0.00 0.00 34.04 2.90
2203 2328 1.376086 CACATGGTGGAGGAGCACA 59.624 57.895 0.00 0.00 34.04 4.57
2240 2365 1.434622 GATGTCTGCACGGCCTCATG 61.435 60.000 0.00 0.00 0.00 3.07
2282 2407 2.766263 CAGGTATGTGCTTCCAGAGGTA 59.234 50.000 0.00 0.00 0.00 3.08
2356 2481 3.559655 TGAGATGGTTCACAAACTTGTCG 59.440 43.478 0.00 0.00 39.91 4.35
2365 2490 3.308402 GGAGGGAAATGAGATGGTTCACA 60.308 47.826 0.00 0.00 0.00 3.58
2380 2505 0.034863 GTAAATGGCCACGGAGGGAA 60.035 55.000 8.16 0.00 38.09 3.97
2539 2664 1.221566 CGCTCCCACATCATCACCA 59.778 57.895 0.00 0.00 0.00 4.17
2647 2772 5.620206 TCTTCTAACATTGGACAGCTTGAA 58.380 37.500 0.00 0.00 0.00 2.69
2893 3018 1.002659 CCACAACCCCGACACTTATCA 59.997 52.381 0.00 0.00 0.00 2.15
2964 3089 7.942341 TGGACAAAGTATTCAAAAGGACACTAT 59.058 33.333 0.00 0.00 0.00 2.12
3371 3516 7.052248 ACTACAACAGTTAGTGCCTTAAAAGT 58.948 34.615 0.00 0.00 31.59 2.66
3677 3823 8.748412 CAACATTCCAAATCCCTTTTGTAGATA 58.252 33.333 0.00 0.00 42.68 1.98
3844 3990 6.723298 ATTCATTAGTAGAGTGGTCCAGAG 57.277 41.667 0.00 0.00 0.00 3.35
3914 4060 3.578688 GGGCTGCACTTAACAAATTCTG 58.421 45.455 0.50 0.00 0.00 3.02
3928 4074 2.032528 CTTTCACCTCGGGCTGCA 59.967 61.111 0.50 0.00 0.00 4.41
3979 4125 2.873245 GCTGACTTCCTGAAGATGCACA 60.873 50.000 13.58 5.13 40.79 4.57
3989 4135 3.754850 TCACATTCAATGCTGACTTCCTG 59.245 43.478 0.00 0.00 0.00 3.86
4127 4273 7.383102 AGCATGAAGAACACCAATAAGTTAG 57.617 36.000 0.00 0.00 0.00 2.34
4133 4279 7.112122 AGTATGAAGCATGAAGAACACCAATA 58.888 34.615 0.00 0.00 0.00 1.90
4134 4280 5.948162 AGTATGAAGCATGAAGAACACCAAT 59.052 36.000 0.00 0.00 0.00 3.16
4135 4281 5.316167 AGTATGAAGCATGAAGAACACCAA 58.684 37.500 0.00 0.00 0.00 3.67
4136 4282 4.910195 AGTATGAAGCATGAAGAACACCA 58.090 39.130 0.00 0.00 0.00 4.17
4137 4283 4.333926 GGAGTATGAAGCATGAAGAACACC 59.666 45.833 0.00 0.00 0.00 4.16
4138 4284 5.181748 AGGAGTATGAAGCATGAAGAACAC 58.818 41.667 0.00 0.00 0.00 3.32
4139 4285 5.426689 AGGAGTATGAAGCATGAAGAACA 57.573 39.130 0.00 0.00 0.00 3.18
4140 4286 5.448360 GCAAGGAGTATGAAGCATGAAGAAC 60.448 44.000 0.00 0.00 0.00 3.01
4141 4287 4.637534 GCAAGGAGTATGAAGCATGAAGAA 59.362 41.667 0.00 0.00 0.00 2.52
4142 4288 4.080695 AGCAAGGAGTATGAAGCATGAAGA 60.081 41.667 0.00 0.00 0.00 2.87
4143 4289 4.197750 AGCAAGGAGTATGAAGCATGAAG 58.802 43.478 0.00 0.00 0.00 3.02
4144 4290 4.226427 AGCAAGGAGTATGAAGCATGAA 57.774 40.909 0.00 0.00 0.00 2.57
4145 4291 3.920231 AGCAAGGAGTATGAAGCATGA 57.080 42.857 0.00 0.00 0.00 3.07
4146 4292 4.978083 AAAGCAAGGAGTATGAAGCATG 57.022 40.909 0.00 0.00 0.00 4.06
4147 4293 4.768968 ACAAAAGCAAGGAGTATGAAGCAT 59.231 37.500 0.00 0.00 0.00 3.79
4148 4294 4.144297 ACAAAAGCAAGGAGTATGAAGCA 58.856 39.130 0.00 0.00 0.00 3.91
4149 4295 4.773323 ACAAAAGCAAGGAGTATGAAGC 57.227 40.909 0.00 0.00 0.00 3.86
4150 4296 6.801539 TGTACAAAAGCAAGGAGTATGAAG 57.198 37.500 0.00 0.00 0.00 3.02
4151 4297 6.939730 TGATGTACAAAAGCAAGGAGTATGAA 59.060 34.615 0.00 0.00 0.00 2.57
4152 4298 6.472016 TGATGTACAAAAGCAAGGAGTATGA 58.528 36.000 0.00 0.00 0.00 2.15
4153 4299 6.372659 ACTGATGTACAAAAGCAAGGAGTATG 59.627 38.462 0.00 0.00 0.00 2.39
4154 4300 6.476378 ACTGATGTACAAAAGCAAGGAGTAT 58.524 36.000 0.00 0.00 0.00 2.12
4155 4301 5.865085 ACTGATGTACAAAAGCAAGGAGTA 58.135 37.500 0.00 0.00 0.00 2.59
4156 4302 4.718961 ACTGATGTACAAAAGCAAGGAGT 58.281 39.130 0.00 0.00 0.00 3.85
4157 4303 5.455392 CAACTGATGTACAAAAGCAAGGAG 58.545 41.667 0.00 0.00 0.00 3.69
4158 4304 4.261572 GCAACTGATGTACAAAAGCAAGGA 60.262 41.667 0.00 0.00 0.00 3.36
4159 4305 3.983344 GCAACTGATGTACAAAAGCAAGG 59.017 43.478 0.00 0.00 0.00 3.61
4186 4332 5.920193 AATAGGAGCATAAAAGCAAAGCA 57.080 34.783 0.00 0.00 36.85 3.91
4187 4333 6.914757 CAGTAATAGGAGCATAAAAGCAAAGC 59.085 38.462 0.00 0.00 36.85 3.51
4228 4418 9.219603 CTAAAACAGTCAACAATAGGAGATTCA 57.780 33.333 0.00 0.00 0.00 2.57
4257 4449 6.426328 GCAAATTGGTCACAAATTCCATACAA 59.574 34.615 0.00 0.00 40.55 2.41
4301 4495 4.265893 TGCCCAGTTTTATTATGCGAGAA 58.734 39.130 0.00 0.00 0.00 2.87
4306 4500 4.826556 TGGTTTGCCCAGTTTTATTATGC 58.173 39.130 0.00 0.00 38.72 3.14
4311 4505 4.102367 ACATGTTGGTTTGCCCAGTTTTAT 59.898 37.500 0.00 0.00 46.31 1.40
4340 4534 4.513318 ACTCAGCTTTCAGTTAAGAGTTGC 59.487 41.667 0.00 0.00 31.38 4.17
4344 4538 7.489574 AAAAGACTCAGCTTTCAGTTAAGAG 57.510 36.000 0.00 0.00 37.12 2.85
4347 4541 8.732746 ACTAAAAAGACTCAGCTTTCAGTTAA 57.267 30.769 0.00 0.00 37.12 2.01
4369 4563 6.666113 TGTACCATTGACAGACCTCAATACTA 59.334 38.462 0.00 0.00 38.57 1.82
4371 4565 5.581085 GTGTACCATTGACAGACCTCAATAC 59.419 44.000 0.00 0.00 38.57 1.89
4383 4577 4.642429 AGACTTCCAAGTGTACCATTGAC 58.358 43.478 8.34 0.00 39.88 3.18
4384 4578 4.974645 AGACTTCCAAGTGTACCATTGA 57.025 40.909 8.34 0.00 39.88 2.57
4385 4579 6.173339 ACATAGACTTCCAAGTGTACCATTG 58.827 40.000 0.00 0.00 37.56 2.82
4387 4581 6.668283 AGTACATAGACTTCCAAGTGTACCAT 59.332 38.462 11.51 0.62 37.56 3.55
4390 4584 6.812160 CCAAGTACATAGACTTCCAAGTGTAC 59.188 42.308 0.00 3.72 37.56 2.90
4391 4585 6.722590 TCCAAGTACATAGACTTCCAAGTGTA 59.277 38.462 0.00 0.00 39.88 2.90
4392 4586 5.542635 TCCAAGTACATAGACTTCCAAGTGT 59.457 40.000 0.00 0.00 39.88 3.55
4393 4587 6.037786 TCCAAGTACATAGACTTCCAAGTG 57.962 41.667 0.00 0.00 39.88 3.16
4394 4588 6.875972 ATCCAAGTACATAGACTTCCAAGT 57.124 37.500 0.00 0.00 43.16 3.16
4395 4589 9.838339 AATTATCCAAGTACATAGACTTCCAAG 57.162 33.333 0.00 0.00 37.57 3.61
4439 4633 5.523588 TCAGAGAACATAGATCAGGAGGTT 58.476 41.667 0.00 0.00 0.00 3.50
4507 4703 3.516586 TCTGGTTGACTGGACAGGATTA 58.483 45.455 4.14 0.00 0.00 1.75
4673 4869 6.756542 GCTTGAAACAACTTTTATCACTGGTT 59.243 34.615 0.00 0.00 0.00 3.67
4684 4880 4.535526 ACACAAGGCTTGAAACAACTTT 57.464 36.364 32.50 4.78 0.00 2.66
4689 4886 3.951775 AACAACACAAGGCTTGAAACA 57.048 38.095 32.50 0.00 0.00 2.83
4690 4887 4.450757 ACAAAACAACACAAGGCTTGAAAC 59.549 37.500 32.50 0.00 0.00 2.78
4694 4891 2.929398 GGACAAAACAACACAAGGCTTG 59.071 45.455 25.06 25.06 0.00 4.01
4696 4893 2.175202 TGGACAAAACAACACAAGGCT 58.825 42.857 0.00 0.00 0.00 4.58
4697 4894 2.663826 TGGACAAAACAACACAAGGC 57.336 45.000 0.00 0.00 0.00 4.35
4805 5005 7.283127 CAGTAACATCTTTACATACTGCCCAAT 59.717 37.037 0.00 0.00 37.66 3.16
4843 5044 7.259290 ACACGATTTTCAGTACTGACAAAAT 57.741 32.000 25.32 25.32 39.66 1.82
4845 5046 5.051307 CGACACGATTTTCAGTACTGACAAA 60.051 40.000 25.13 23.99 39.66 2.83
4855 5056 2.408704 GTCCTGACGACACGATTTTCAG 59.591 50.000 0.00 0.00 41.54 3.02
4887 5088 2.411409 GCACACACACACAACTTTTTGG 59.589 45.455 0.00 0.00 37.00 3.28
4894 5096 1.984990 CAACAAGCACACACACACAAC 59.015 47.619 0.00 0.00 0.00 3.32
4943 5145 6.301169 ACCTAATCCTTCTTACTGGTTCAG 57.699 41.667 0.00 0.00 37.52 3.02
4944 5146 6.697641 AACCTAATCCTTCTTACTGGTTCA 57.302 37.500 0.00 0.00 31.83 3.18
4969 5171 4.908601 TGTATTGATGACAGTTCAGGGT 57.091 40.909 0.00 0.00 34.35 4.34
4970 5172 5.390885 CGTTTGTATTGATGACAGTTCAGGG 60.391 44.000 0.00 0.00 34.35 4.45
4971 5173 5.621422 CGTTTGTATTGATGACAGTTCAGG 58.379 41.667 0.00 0.00 34.35 3.86
4972 5174 5.082059 GCGTTTGTATTGATGACAGTTCAG 58.918 41.667 0.00 0.00 34.35 3.02
5011 6215 5.535030 CCTTATTACCTTTAATGGGCTCCAC 59.465 44.000 11.78 0.00 35.80 4.02
5040 6245 7.930325 TGTGTTCATGCAATTTGGAAATCTAAA 59.070 29.630 0.00 0.00 0.00 1.85
5053 6258 3.192001 CCTGCTAAGTGTGTTCATGCAAT 59.808 43.478 0.00 0.00 0.00 3.56
5059 6264 1.593196 GCACCTGCTAAGTGTGTTCA 58.407 50.000 3.82 0.00 37.56 3.18
5088 6293 3.898123 GCTGGGAGTCTACCATTCTATCA 59.102 47.826 3.57 0.00 37.38 2.15
5090 6295 3.243724 GGCTGGGAGTCTACCATTCTAT 58.756 50.000 3.57 0.00 37.38 1.98
5091 6296 2.679082 GGCTGGGAGTCTACCATTCTA 58.321 52.381 3.57 0.00 37.38 2.10
5092 6297 1.501582 GGCTGGGAGTCTACCATTCT 58.498 55.000 3.57 0.00 37.38 2.40
5094 6299 0.325296 TCGGCTGGGAGTCTACCATT 60.325 55.000 3.57 0.00 37.38 3.16
5095 6300 0.325296 TTCGGCTGGGAGTCTACCAT 60.325 55.000 3.57 0.00 37.38 3.55
5096 6301 1.077805 TTCGGCTGGGAGTCTACCA 59.922 57.895 3.02 3.02 36.38 3.25
5097 6302 0.971447 AGTTCGGCTGGGAGTCTACC 60.971 60.000 0.00 0.00 0.00 3.18
5098 6303 0.173708 CAGTTCGGCTGGGAGTCTAC 59.826 60.000 0.00 0.00 41.42 2.59
5099 6304 2.579878 CAGTTCGGCTGGGAGTCTA 58.420 57.895 0.00 0.00 41.42 2.59
5100 6305 3.382111 CAGTTCGGCTGGGAGTCT 58.618 61.111 0.00 0.00 41.42 3.24
5119 6324 8.301252 TGGCATAAATGTAGTAGAAGTGTAGA 57.699 34.615 0.00 0.00 0.00 2.59
5122 6327 8.807948 AAATGGCATAAATGTAGTAGAAGTGT 57.192 30.769 0.00 0.00 0.00 3.55
5127 6332 9.679661 TGAGAAAAATGGCATAAATGTAGTAGA 57.320 29.630 0.00 0.00 0.00 2.59
5128 6333 9.941664 CTGAGAAAAATGGCATAAATGTAGTAG 57.058 33.333 0.00 0.00 0.00 2.57
5150 6378 4.401925 AGGGTGAAAATTGAGAACCTGAG 58.598 43.478 0.00 0.00 0.00 3.35
5151 6379 4.453480 AGGGTGAAAATTGAGAACCTGA 57.547 40.909 0.00 0.00 0.00 3.86
5152 6380 4.829492 AGAAGGGTGAAAATTGAGAACCTG 59.171 41.667 0.00 0.00 0.00 4.00
5153 6381 5.066913 AGAAGGGTGAAAATTGAGAACCT 57.933 39.130 0.00 0.00 0.00 3.50
5154 6382 5.509670 CCAAGAAGGGTGAAAATTGAGAACC 60.510 44.000 0.00 0.00 0.00 3.62
5156 6384 4.039124 GCCAAGAAGGGTGAAAATTGAGAA 59.961 41.667 0.00 0.00 38.09 2.87
5169 6397 3.193479 GGAAACATACAAGCCAAGAAGGG 59.807 47.826 0.00 0.00 38.09 3.95
5171 6399 4.082125 AGGGAAACATACAAGCCAAGAAG 58.918 43.478 0.00 0.00 0.00 2.85
5234 6462 8.818622 ATGCAGCAATGTATGGATAGATAAAT 57.181 30.769 0.00 0.00 0.00 1.40
5237 6465 7.362315 GCAAATGCAGCAATGTATGGATAGATA 60.362 37.037 0.00 0.00 41.59 1.98
5285 6513 4.439305 TGGAGCAAGAATAAATGCACAC 57.561 40.909 0.00 0.00 44.95 3.82
5289 6517 5.762825 TCTGATGGAGCAAGAATAAATGC 57.237 39.130 0.00 0.00 42.87 3.56
5298 6526 3.842007 AGAGGATTCTGATGGAGCAAG 57.158 47.619 0.00 0.00 30.72 4.01
5317 6545 7.652300 TGTGTAAAGTAACAAGAGCATGTAG 57.348 36.000 0.00 0.00 32.02 2.74
5351 6579 8.021898 TCTTTCCAAATTTCATCTCTTTGGTT 57.978 30.769 11.75 0.00 45.85 3.67
5373 6601 9.843334 TCGTTTTTGTTGTGTATAGTTTTTCTT 57.157 25.926 0.00 0.00 0.00 2.52
5411 6639 9.342308 ACTTTGAAACAGAGAGAATGTTAATGA 57.658 29.630 0.00 0.00 39.91 2.57
5427 6655 5.367945 AACCTCTCCTGTACTTTGAAACA 57.632 39.130 0.00 0.00 0.00 2.83
5453 6681 5.351740 GGTCAGTTTTGGAGACTATGCTAAC 59.648 44.000 0.00 0.00 32.98 2.34
5587 6825 1.829849 TGAAGCACAGATCTCTCCAGG 59.170 52.381 0.00 0.00 0.00 4.45
5637 6875 4.776322 CATGGAGGTTGCGGGCGA 62.776 66.667 0.00 0.00 0.00 5.54
5643 6881 3.443045 CACCGGCATGGAGGTTGC 61.443 66.667 0.00 0.00 42.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.