Multiple sequence alignment - TraesCS6A01G114100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G114100 chr6A 100.000 5670 0 0 1 5670 84074463 84068794 0.000000e+00 10471.0
1 TraesCS6A01G114100 chr6B 91.367 2444 123 38 1 2401 141678083 141675685 0.000000e+00 3264.0
2 TraesCS6A01G114100 chr6B 89.958 1922 141 25 2516 4394 141675659 141673747 0.000000e+00 2433.0
3 TraesCS6A01G114100 chr6B 87.838 666 72 9 4980 5639 141672911 141672249 0.000000e+00 773.0
4 TraesCS6A01G114100 chr6B 91.458 480 35 3 4504 4978 141673516 141673038 0.000000e+00 654.0
5 TraesCS6A01G114100 chr7A 95.652 46 2 0 2165 2210 724460986 724460941 2.190000e-09 75.0
6 TraesCS6A01G114100 chr7A 95.556 45 2 0 2166 2210 509222371 509222415 7.880000e-09 73.1
7 TraesCS6A01G114100 chr3D 95.652 46 2 0 2165 2210 454901794 454901749 2.190000e-09 75.0
8 TraesCS6A01G114100 chr1D 95.652 46 2 0 2165 2210 138347292 138347247 2.190000e-09 75.0
9 TraesCS6A01G114100 chr1A 95.652 46 2 0 2165 2210 154576866 154576821 2.190000e-09 75.0
10 TraesCS6A01G114100 chr1A 92.000 50 4 0 2160 2209 241190897 241190946 2.830000e-08 71.3
11 TraesCS6A01G114100 chr6D 97.619 42 1 0 2166 2207 353037686 353037727 7.880000e-09 73.1
12 TraesCS6A01G114100 chr5D 97.619 42 1 0 2165 2206 398772674 398772715 7.880000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G114100 chr6A 84068794 84074463 5669 True 10471 10471 100.00000 1 5670 1 chr6A.!!$R1 5669
1 TraesCS6A01G114100 chr6B 141672249 141678083 5834 True 1781 3264 90.15525 1 5639 4 chr6B.!!$R1 5638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 521 0.306533 CGGACCAGTTCAAAACCGTG 59.693 55.0 0.00 0.0 36.38 4.94 F
1337 1356 0.176680 CTCCCCGACAAGGTGATGAG 59.823 60.0 0.00 0.0 38.74 2.90 F
1525 1566 0.177604 AGAGAGGGATTTCGCAGCAG 59.822 55.0 0.00 0.0 0.00 4.24 F
2067 2112 0.251787 GGGAAAGGGGAACATGTGCT 60.252 55.0 3.21 0.0 0.00 4.40 F
2923 2974 0.390340 TCGATCTGGCAAGTGCAGAC 60.390 55.0 5.52 2.0 44.36 3.51 F
3295 3361 0.472471 TGTTCACCTTCTTCGCCCTT 59.528 50.0 0.00 0.0 0.00 3.95 F
4221 4308 0.822164 GCTATCCACACCCACTACGT 59.178 55.0 0.00 0.0 0.00 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1380 1421 0.028242 GCGAGTGACGATCTGACGAT 59.972 55.000 0.00 0.00 45.77 3.73 R
2498 2543 0.535797 GTACTCCCTCCGTTCCAAGG 59.464 60.000 0.00 0.00 0.00 3.61 R
3388 3454 0.755686 GTGGTGTTGGGCCATTTTCA 59.244 50.000 7.26 1.10 38.40 2.69 R
3415 3483 1.269723 GTTCCAGGCACTAGTTTTGGC 59.730 52.381 10.76 5.04 36.02 4.52 R
4228 4315 0.179936 GCTTGATGGAGTCAGAGGGG 59.820 60.000 0.00 0.00 38.29 4.79 R
4256 4343 0.887933 CCATTTGTTAGGCACGGCTT 59.112 50.000 0.00 0.00 0.00 4.35 R
5035 5402 0.960364 GCCTTGGCAGGATTTCACGA 60.960 55.000 6.79 0.00 44.19 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.529151 GACAAACCACAGCTTGTGTTG 58.471 47.619 13.06 13.16 46.45 3.33
28 29 1.892474 ACAAACCACAGCTTGTGTTGT 59.108 42.857 14.07 14.07 46.45 3.32
40 41 3.635331 CTTGTGTTGTTGCATTCTCCAG 58.365 45.455 0.00 0.00 0.00 3.86
103 104 2.165641 AAAAGCAGCCTTTTATACGGCC 59.834 45.455 0.00 0.00 46.53 6.13
116 117 3.803082 CGGCCGATGCACACTTGG 61.803 66.667 24.07 0.00 40.13 3.61
146 147 4.505742 GGCTAGCTATTTGGCTAACTCCAT 60.506 45.833 15.72 0.00 43.11 3.41
178 179 2.663826 AAGCTTTCGTGTTTTTGCCA 57.336 40.000 0.00 0.00 0.00 4.92
179 180 2.663826 AGCTTTCGTGTTTTTGCCAA 57.336 40.000 0.00 0.00 0.00 4.52
180 181 2.267426 AGCTTTCGTGTTTTTGCCAAC 58.733 42.857 0.00 0.00 0.00 3.77
203 204 8.554528 CAACACTTCATATGTAATCCTTGCTAG 58.445 37.037 1.90 0.00 0.00 3.42
233 234 5.519206 GCTATGTACGTACAAGCTAGCTTTT 59.481 40.000 32.83 23.08 38.40 2.27
265 266 4.118168 ACTCCAGGTCAAATGGAAATGT 57.882 40.909 0.00 0.00 46.04 2.71
266 267 3.828451 ACTCCAGGTCAAATGGAAATGTG 59.172 43.478 0.00 0.00 46.04 3.21
282 283 6.894654 TGGAAATGTGATAGCCTTTTGGATTA 59.105 34.615 0.00 0.00 44.07 1.75
283 284 7.147915 TGGAAATGTGATAGCCTTTTGGATTAC 60.148 37.037 0.00 0.00 44.07 1.89
298 299 3.055240 TGGATTACCCGGTGAAATACGTT 60.055 43.478 0.00 0.00 37.93 3.99
323 324 3.189287 GTGTTTGGTGAGATGCCTACAAG 59.811 47.826 0.00 0.00 0.00 3.16
378 379 2.712057 ACATGCTGCTTTGTGTTAGC 57.288 45.000 0.00 0.00 39.10 3.09
417 418 1.069296 TCTTGCAGTTGCGTATGTTGC 60.069 47.619 0.00 0.00 45.83 4.17
442 443 3.535280 AACGTGGGCAAAAGAAATGTT 57.465 38.095 0.00 0.00 0.00 2.71
450 451 3.247411 GGCAAAAGAAATGTTTGGTTCCG 59.753 43.478 0.00 0.00 36.64 4.30
467 468 4.330894 GGTTCCGTTATTTCTACTTTCCCG 59.669 45.833 0.00 0.00 0.00 5.14
486 487 3.408634 CCGGAAAATGGAGTTACTGTGT 58.591 45.455 0.00 0.00 0.00 3.72
487 488 3.188460 CCGGAAAATGGAGTTACTGTGTG 59.812 47.826 0.00 0.00 0.00 3.82
488 489 3.364964 CGGAAAATGGAGTTACTGTGTGC 60.365 47.826 0.00 0.00 0.00 4.57
489 490 3.364964 GGAAAATGGAGTTACTGTGTGCG 60.365 47.826 0.00 0.00 0.00 5.34
490 491 2.831685 AATGGAGTTACTGTGTGCGA 57.168 45.000 0.00 0.00 0.00 5.10
491 492 2.080286 ATGGAGTTACTGTGTGCGAC 57.920 50.000 0.00 0.00 0.00 5.19
493 494 1.007336 GGAGTTACTGTGTGCGACCG 61.007 60.000 0.00 0.00 0.00 4.79
495 496 2.356553 TTACTGTGTGCGACCGCC 60.357 61.111 12.08 4.14 41.09 6.13
496 497 3.869473 TTACTGTGTGCGACCGCCC 62.869 63.158 12.08 0.35 41.09 6.13
512 513 4.680237 CCTGCGCGGACCAGTTCA 62.680 66.667 20.25 0.00 33.16 3.18
513 514 2.664851 CTGCGCGGACCAGTTCAA 60.665 61.111 11.90 0.00 0.00 2.69
514 515 2.203084 TGCGCGGACCAGTTCAAA 60.203 55.556 8.83 0.00 0.00 2.69
515 516 1.781025 CTGCGCGGACCAGTTCAAAA 61.781 55.000 11.90 0.00 0.00 2.44
516 517 1.370051 GCGCGGACCAGTTCAAAAC 60.370 57.895 8.83 0.00 0.00 2.43
517 518 1.281656 CGCGGACCAGTTCAAAACC 59.718 57.895 0.00 0.00 0.00 3.27
518 519 1.281656 GCGGACCAGTTCAAAACCG 59.718 57.895 0.00 0.00 42.63 4.44
519 520 1.441732 GCGGACCAGTTCAAAACCGT 61.442 55.000 0.00 0.00 41.92 4.83
520 521 0.306533 CGGACCAGTTCAAAACCGTG 59.693 55.000 0.00 0.00 36.38 4.94
521 522 1.385528 GGACCAGTTCAAAACCGTGT 58.614 50.000 0.00 0.00 0.00 4.49
524 525 1.741145 ACCAGTTCAAAACCGTGTGAC 59.259 47.619 0.00 0.00 0.00 3.67
539 540 8.792830 AACCGTGTGACTATTAGTACTAGTTA 57.207 34.615 0.00 0.00 29.67 2.24
618 628 9.408069 CGGAGTAGTACTAAATGGTTCATAATC 57.592 37.037 3.61 0.00 0.00 1.75
681 691 3.442273 TCGTCCTGCAGAAAAGTTTGTTT 59.558 39.130 17.39 0.00 0.00 2.83
691 701 6.673076 GCAGAAAAGTTTGTTTGCTTTCCTTC 60.673 38.462 10.37 0.00 34.26 3.46
703 713 6.723298 TTGCTTTCCTTCCAATTTTACTGA 57.277 33.333 0.00 0.00 0.00 3.41
719 729 5.835113 TTACTGAAATAAATGAGCAGGCC 57.165 39.130 0.00 0.00 0.00 5.19
758 768 3.260632 TGCCAGTAGTGTTAGAATGAGCA 59.739 43.478 0.00 0.00 0.00 4.26
822 832 8.643324 GGTTTGGAGATAGCTAGAGATAGAAAA 58.357 37.037 0.00 0.00 0.00 2.29
895 905 3.189702 ACGAAACCCCGTGACATATTTTG 59.810 43.478 0.00 0.00 41.70 2.44
969 979 3.955471 TCTCTCCACATCCAAATTCCAC 58.045 45.455 0.00 0.00 0.00 4.02
977 987 3.321682 ACATCCAAATTCCACACACCTTG 59.678 43.478 0.00 0.00 0.00 3.61
1058 1077 2.515523 CATGAGCTCCGGCAAGGG 60.516 66.667 12.15 0.00 41.70 3.95
1071 1090 1.755783 CAAGGGCAGCAAGGGATCC 60.756 63.158 1.92 1.92 0.00 3.36
1141 1160 1.235724 CGTCCCCAAGGTTGAAGAAC 58.764 55.000 0.00 0.00 0.00 3.01
1146 1165 2.887152 CCCCAAGGTTGAAGAACAAGAG 59.113 50.000 0.00 0.00 39.30 2.85
1188 1207 2.512286 ATCATGACAGCGCCGGTG 60.512 61.111 15.62 15.62 37.06 4.94
1248 1267 0.718343 GCGACAGAGAACTGCACATC 59.282 55.000 0.00 0.00 46.95 3.06
1263 1282 2.026734 ATCATCACGGAGCGCGAG 59.973 61.111 12.10 0.00 0.00 5.03
1302 1321 1.198637 GAGATGTTCACCAAGCTGCAC 59.801 52.381 1.02 0.00 0.00 4.57
1336 1355 1.264749 CCTCCCCGACAAGGTGATGA 61.265 60.000 0.00 0.00 38.74 2.92
1337 1356 0.176680 CTCCCCGACAAGGTGATGAG 59.823 60.000 0.00 0.00 38.74 2.90
1338 1357 0.252057 TCCCCGACAAGGTGATGAGA 60.252 55.000 0.00 0.00 38.74 3.27
1340 1359 1.202580 CCCCGACAAGGTGATGAGATC 60.203 57.143 0.00 0.00 38.74 2.75
1358 1377 4.599041 AGATCAGCAGATACCTAGCTAGG 58.401 47.826 33.98 33.98 41.11 3.02
1359 1378 3.699038 GATCAGCAGATACCTAGCTAGGG 59.301 52.174 37.09 22.82 40.27 3.53
1375 1394 4.229123 AGCTAGGGTCGTATATTAGGGCTA 59.771 45.833 0.00 0.00 0.00 3.93
1380 1421 4.256920 GGTCGTATATTAGGGCTAGTCGA 58.743 47.826 0.00 0.00 0.00 4.20
1382 1423 5.007528 GGTCGTATATTAGGGCTAGTCGATC 59.992 48.000 0.00 0.00 0.00 3.69
1476 1517 1.277580 ACATCAAGAGCCTGGAGGGG 61.278 60.000 0.00 0.00 35.18 4.79
1522 1563 1.686052 AGCTAGAGAGGGATTTCGCAG 59.314 52.381 0.00 0.00 0.00 5.18
1523 1564 1.871822 GCTAGAGAGGGATTTCGCAGC 60.872 57.143 0.00 0.00 0.00 5.25
1524 1565 1.410517 CTAGAGAGGGATTTCGCAGCA 59.589 52.381 0.00 0.00 0.00 4.41
1525 1566 0.177604 AGAGAGGGATTTCGCAGCAG 59.822 55.000 0.00 0.00 0.00 4.24
1566 1607 1.522569 CAATGACGGGGTCTCCTCC 59.477 63.158 0.00 0.00 33.15 4.30
1622 1663 4.394712 GGTGACTGGGCTGTCGGG 62.395 72.222 6.68 0.00 39.64 5.14
1638 1679 2.273449 GGTGGTGGGATCTGGCAG 59.727 66.667 8.58 8.58 0.00 4.85
1647 1688 3.746949 GATCTGGCAGACTGGGGCG 62.747 68.421 21.37 0.00 0.00 6.13
1865 1909 2.835705 CGGGGATCTCGTCTGACCG 61.836 68.421 1.55 0.00 34.32 4.79
1926 1970 2.224892 ACCCATGCTCTCGATCTAGCTA 60.225 50.000 13.62 0.00 39.53 3.32
1927 1971 2.423185 CCCATGCTCTCGATCTAGCTAG 59.577 54.545 15.01 15.01 39.53 3.42
1928 1972 2.159393 CCATGCTCTCGATCTAGCTAGC 60.159 54.545 16.35 6.62 39.53 3.42
1929 1973 2.559698 TGCTCTCGATCTAGCTAGCT 57.440 50.000 23.12 23.12 39.53 3.32
1956 2000 0.768622 TTTTGGTCAGGGATGACGGT 59.231 50.000 2.56 0.00 39.57 4.83
1972 2016 1.003812 ACGGTTTGCCAGGCTTATACA 59.996 47.619 14.15 0.00 34.09 2.29
1973 2017 2.297701 CGGTTTGCCAGGCTTATACAT 58.702 47.619 14.15 0.00 34.09 2.29
1984 2028 5.513788 CCAGGCTTATACATAGGTGCAAGAT 60.514 44.000 7.01 0.00 0.00 2.40
1990 2034 9.141400 GCTTATACATAGGTGCAAGATTACTAC 57.859 37.037 7.01 0.00 0.00 2.73
1999 2043 7.117397 AGGTGCAAGATTACTACTAGTAGTCA 58.883 38.462 33.47 25.25 44.58 3.41
2000 2044 7.780745 AGGTGCAAGATTACTACTAGTAGTCAT 59.219 37.037 33.47 28.27 44.58 3.06
2001 2045 9.064706 GGTGCAAGATTACTACTAGTAGTCATA 57.935 37.037 33.47 21.79 44.58 2.15
2016 2060 6.634805 AGTAGTCATAATATGATTGAGGCCG 58.365 40.000 6.21 0.00 42.04 6.13
2067 2112 0.251787 GGGAAAGGGGAACATGTGCT 60.252 55.000 3.21 0.00 0.00 4.40
2079 2124 4.216257 GGAACATGTGCTATCTTGTTGTGT 59.784 41.667 3.21 0.00 36.38 3.72
2092 2137 4.826733 TCTTGTTGTGTTGGTGCATATCTT 59.173 37.500 0.00 0.00 0.00 2.40
2134 2179 3.635591 CCTGCAGGAGGGTCATATTTTT 58.364 45.455 29.88 0.00 38.36 1.94
2140 2185 5.505780 CAGGAGGGTCATATTTTTACCACA 58.494 41.667 0.00 0.00 34.83 4.17
2224 2269 5.041940 GGCTAGTTTGATACGGAGTTAGTG 58.958 45.833 0.00 0.00 37.78 2.74
2237 2282 4.547532 GGAGTTAGTGGTGTATATCTGCG 58.452 47.826 0.00 0.00 0.00 5.18
2289 2334 7.582435 TCTCGAAACTGCTCAGTAAATTAAG 57.418 36.000 2.62 0.00 41.58 1.85
2326 2371 2.754472 GCATAGGATACACATGCGTCA 58.246 47.619 0.00 0.00 44.11 4.35
2336 2381 4.864916 ACACATGCGTCATATCAGAAAC 57.135 40.909 0.00 0.00 0.00 2.78
2376 2421 2.284952 CGAAACGGTTGTTCGGTAAAGT 59.715 45.455 6.99 0.00 37.31 2.66
2401 2446 0.873743 AACCCAAACGCGTGCAATTG 60.874 50.000 14.98 13.84 0.00 2.32
2402 2447 2.656807 CCCAAACGCGTGCAATTGC 61.657 57.895 23.69 23.69 42.50 3.56
2418 2463 6.956393 GCAATTGCATGTAACTTGTTTTTG 57.044 33.333 25.36 0.00 41.59 2.44
2419 2464 5.396070 GCAATTGCATGTAACTTGTTTTTGC 59.604 36.000 25.36 11.26 41.59 3.68
2420 2465 4.768659 TTGCATGTAACTTGTTTTTGCG 57.231 36.364 0.00 0.00 0.00 4.85
2421 2466 2.537625 TGCATGTAACTTGTTTTTGCGC 59.462 40.909 0.00 0.00 0.00 6.09
2422 2467 2.794350 GCATGTAACTTGTTTTTGCGCT 59.206 40.909 9.73 0.00 0.00 5.92
2423 2468 3.245048 GCATGTAACTTGTTTTTGCGCTT 59.755 39.130 9.73 0.00 0.00 4.68
2424 2469 4.442733 GCATGTAACTTGTTTTTGCGCTTA 59.557 37.500 9.73 0.00 0.00 3.09
2425 2470 5.609483 GCATGTAACTTGTTTTTGCGCTTAC 60.609 40.000 9.73 6.21 0.00 2.34
2426 2471 4.982999 TGTAACTTGTTTTTGCGCTTACA 58.017 34.783 9.73 8.94 0.00 2.41
2427 2472 5.583495 TGTAACTTGTTTTTGCGCTTACAT 58.417 33.333 9.73 0.00 0.00 2.29
2428 2473 6.726230 TGTAACTTGTTTTTGCGCTTACATA 58.274 32.000 9.73 0.00 0.00 2.29
2429 2474 7.364200 TGTAACTTGTTTTTGCGCTTACATAT 58.636 30.769 9.73 0.46 0.00 1.78
2430 2475 8.504815 TGTAACTTGTTTTTGCGCTTACATATA 58.495 29.630 9.73 0.00 0.00 0.86
2431 2476 9.332301 GTAACTTGTTTTTGCGCTTACATATAA 57.668 29.630 9.73 0.00 0.00 0.98
2432 2477 7.790861 ACTTGTTTTTGCGCTTACATATAAC 57.209 32.000 9.73 2.68 0.00 1.89
2433 2478 7.590279 ACTTGTTTTTGCGCTTACATATAACT 58.410 30.769 9.73 0.00 0.00 2.24
2434 2479 7.749126 ACTTGTTTTTGCGCTTACATATAACTC 59.251 33.333 9.73 0.00 0.00 3.01
2435 2480 7.135089 TGTTTTTGCGCTTACATATAACTCA 57.865 32.000 9.73 0.00 0.00 3.41
2436 2481 7.757526 TGTTTTTGCGCTTACATATAACTCAT 58.242 30.769 9.73 0.00 0.00 2.90
2437 2482 7.696035 TGTTTTTGCGCTTACATATAACTCATG 59.304 33.333 9.73 0.00 0.00 3.07
2438 2483 7.546778 TTTTGCGCTTACATATAACTCATGA 57.453 32.000 9.73 0.00 0.00 3.07
2439 2484 6.769608 TTGCGCTTACATATAACTCATGAG 57.230 37.500 21.37 21.37 0.00 2.90
2440 2485 4.686091 TGCGCTTACATATAACTCATGAGC 59.314 41.667 22.83 4.79 0.00 4.26
2441 2486 4.092091 GCGCTTACATATAACTCATGAGCC 59.908 45.833 22.83 0.00 0.00 4.70
2442 2487 5.230182 CGCTTACATATAACTCATGAGCCA 58.770 41.667 22.83 10.87 0.00 4.75
2443 2488 5.119279 CGCTTACATATAACTCATGAGCCAC 59.881 44.000 22.83 0.00 0.00 5.01
2444 2489 5.409826 GCTTACATATAACTCATGAGCCACC 59.590 44.000 22.83 0.00 0.00 4.61
2445 2490 6.742644 GCTTACATATAACTCATGAGCCACCT 60.743 42.308 22.83 5.94 0.00 4.00
2446 2491 5.220710 ACATATAACTCATGAGCCACCTC 57.779 43.478 22.83 0.00 38.62 3.85
2455 2500 1.951209 TGAGCCACCTCATAGGAACA 58.049 50.000 0.00 0.00 42.98 3.18
2456 2501 1.555075 TGAGCCACCTCATAGGAACAC 59.445 52.381 0.00 0.00 42.98 3.32
2457 2502 1.555075 GAGCCACCTCATAGGAACACA 59.445 52.381 0.00 0.00 37.67 3.72
2458 2503 1.985159 AGCCACCTCATAGGAACACAA 59.015 47.619 0.00 0.00 37.67 3.33
2459 2504 2.578021 AGCCACCTCATAGGAACACAAT 59.422 45.455 0.00 0.00 37.67 2.71
2460 2505 2.945668 GCCACCTCATAGGAACACAATC 59.054 50.000 0.00 0.00 37.67 2.67
2461 2506 3.370953 GCCACCTCATAGGAACACAATCT 60.371 47.826 0.00 0.00 37.67 2.40
2462 2507 4.446371 CCACCTCATAGGAACACAATCTC 58.554 47.826 0.00 0.00 37.67 2.75
2463 2508 4.446371 CACCTCATAGGAACACAATCTCC 58.554 47.826 0.00 0.00 37.67 3.71
2464 2509 4.080919 CACCTCATAGGAACACAATCTCCA 60.081 45.833 0.00 0.00 37.67 3.86
2465 2510 4.536090 ACCTCATAGGAACACAATCTCCAA 59.464 41.667 0.00 0.00 37.67 3.53
2476 2521 4.520492 ACACAATCTCCAAATCACCTTGTC 59.480 41.667 0.00 0.00 0.00 3.18
2479 2524 5.010012 ACAATCTCCAAATCACCTTGTCAAC 59.990 40.000 0.00 0.00 0.00 3.18
2493 2538 6.018180 CACCTTGTCAACCTTAACTGTTACTC 60.018 42.308 0.00 0.00 0.00 2.59
2494 2539 5.469084 CCTTGTCAACCTTAACTGTTACTCC 59.531 44.000 0.00 0.00 0.00 3.85
2495 2540 4.964593 TGTCAACCTTAACTGTTACTCCC 58.035 43.478 0.00 0.00 0.00 4.30
2496 2541 4.657039 TGTCAACCTTAACTGTTACTCCCT 59.343 41.667 0.00 0.00 0.00 4.20
2497 2542 5.221581 TGTCAACCTTAACTGTTACTCCCTC 60.222 44.000 0.00 0.00 0.00 4.30
2498 2543 4.285260 TCAACCTTAACTGTTACTCCCTCC 59.715 45.833 0.00 0.00 0.00 4.30
2499 2544 3.179685 ACCTTAACTGTTACTCCCTCCC 58.820 50.000 0.00 0.00 0.00 4.30
2500 2545 3.181398 ACCTTAACTGTTACTCCCTCCCT 60.181 47.826 0.00 0.00 0.00 4.20
2501 2546 3.844804 CCTTAACTGTTACTCCCTCCCTT 59.155 47.826 0.00 0.00 0.00 3.95
2502 2547 4.323562 CCTTAACTGTTACTCCCTCCCTTG 60.324 50.000 0.00 0.00 0.00 3.61
2503 2548 1.657804 ACTGTTACTCCCTCCCTTGG 58.342 55.000 0.00 0.00 0.00 3.61
2504 2549 1.151413 ACTGTTACTCCCTCCCTTGGA 59.849 52.381 0.00 0.00 0.00 3.53
2505 2550 2.266279 CTGTTACTCCCTCCCTTGGAA 58.734 52.381 0.00 0.00 0.00 3.53
2506 2551 1.982958 TGTTACTCCCTCCCTTGGAAC 59.017 52.381 0.00 0.00 0.00 3.62
2507 2552 1.066358 GTTACTCCCTCCCTTGGAACG 60.066 57.143 0.00 0.00 0.00 3.95
2508 2553 0.616679 TACTCCCTCCCTTGGAACGG 60.617 60.000 0.00 0.00 0.00 4.44
2509 2554 1.612442 CTCCCTCCCTTGGAACGGA 60.612 63.158 0.00 0.00 31.78 4.69
2510 2555 1.612442 TCCCTCCCTTGGAACGGAG 60.612 63.158 0.00 0.00 44.59 4.63
2515 2560 3.807368 CCTTGGAACGGAGGGAGT 58.193 61.111 0.00 0.00 31.71 3.85
2516 2561 2.986492 CCTTGGAACGGAGGGAGTA 58.014 57.895 0.00 0.00 31.71 2.59
2517 2562 0.535797 CCTTGGAACGGAGGGAGTAC 59.464 60.000 0.00 0.00 31.71 2.73
2518 2563 1.558233 CTTGGAACGGAGGGAGTACT 58.442 55.000 0.00 0.00 0.00 2.73
2548 2597 4.099113 TGCATCCTAGTTCTCATCTGAGTG 59.901 45.833 7.07 0.00 42.60 3.51
2571 2620 2.093973 TCCTCCTCATCTTGCTTCGTTC 60.094 50.000 0.00 0.00 0.00 3.95
2591 2640 1.277557 CTGTCCTTCTACTGCTGCCTT 59.722 52.381 0.00 0.00 0.00 4.35
2627 2678 9.802039 AGTTTACAACCTCCAATCAAATAGTAA 57.198 29.630 0.00 0.00 0.00 2.24
2640 2691 6.019779 TCAAATAGTAACATGGTGTTTGCC 57.980 37.500 0.00 0.00 41.45 4.52
2713 2764 6.231211 AGTTGGACACACTATAAACTTGAGG 58.769 40.000 0.00 0.00 0.00 3.86
2828 2879 6.413892 TGTCTAAATGCACATGACCATTAGA 58.586 36.000 0.00 4.41 31.82 2.10
2873 2924 3.258872 TGGGTGATCATTCTTGCCTTTTG 59.741 43.478 0.00 0.00 0.00 2.44
2890 2941 5.569413 CCTTTTGTTTCTATGCGGACATAC 58.431 41.667 0.00 0.00 37.74 2.39
2891 2942 5.354234 CCTTTTGTTTCTATGCGGACATACT 59.646 40.000 0.00 0.00 37.74 2.12
2892 2943 6.537301 CCTTTTGTTTCTATGCGGACATACTA 59.463 38.462 0.00 0.00 37.74 1.82
2922 2973 0.538584 ATCGATCTGGCAAGTGCAGA 59.461 50.000 5.52 6.74 44.36 4.26
2923 2974 0.390340 TCGATCTGGCAAGTGCAGAC 60.390 55.000 5.52 2.00 44.36 3.51
2938 2989 3.060895 GTGCAGACATTTAGCGAGTACAC 59.939 47.826 0.00 0.00 0.00 2.90
2950 3001 4.504858 AGCGAGTACACAGGAATAAAAGG 58.495 43.478 0.00 0.00 0.00 3.11
2951 3002 4.020485 AGCGAGTACACAGGAATAAAAGGT 60.020 41.667 0.00 0.00 0.00 3.50
3018 3069 7.204604 ACATTATTACCATCATTGTGCATGTG 58.795 34.615 0.00 0.00 34.06 3.21
3020 3071 1.187974 ACCATCATTGTGCATGTGGG 58.812 50.000 0.00 0.00 37.91 4.61
3026 3077 2.756207 TCATTGTGCATGTGGGAGATTG 59.244 45.455 0.00 0.00 34.06 2.67
3029 3080 1.026182 GTGCATGTGGGAGATTGCGA 61.026 55.000 0.00 0.00 37.92 5.10
3074 3130 8.768397 ACACATCCTTTATTTCTATCACTGGTA 58.232 33.333 0.00 0.00 0.00 3.25
3080 3136 9.396022 CCTTTATTTCTATCACTGGTATTGTGT 57.604 33.333 0.00 0.00 36.83 3.72
3121 3177 7.976135 ATCCATGATTAATTCTGTAGCAGTC 57.024 36.000 0.00 0.00 32.61 3.51
3132 3197 3.445450 TCTGTAGCAGTCCTTCACATCTC 59.555 47.826 0.00 0.00 32.61 2.75
3141 3206 2.305927 TCCTTCACATCTCCTGGTTTCC 59.694 50.000 0.00 0.00 0.00 3.13
3181 3247 6.519891 GCCTTATTTTTCCCAAAGATCAACCA 60.520 38.462 0.00 0.00 0.00 3.67
3224 3290 5.560724 TCATAGAAAGGGTAGCATAATGCC 58.439 41.667 0.00 0.00 46.52 4.40
3289 3355 8.398665 GTCATATGGTTTATGTTCACCTTCTTC 58.601 37.037 2.13 0.00 33.76 2.87
3291 3357 3.500680 TGGTTTATGTTCACCTTCTTCGC 59.499 43.478 0.00 0.00 33.76 4.70
3295 3361 0.472471 TGTTCACCTTCTTCGCCCTT 59.528 50.000 0.00 0.00 0.00 3.95
3341 3407 5.222079 TGTGTCCACATGAAACTAGCTAA 57.778 39.130 0.00 0.00 36.21 3.09
3388 3454 7.399765 TCCATAAATCCACAATCACTTCCATTT 59.600 33.333 0.00 0.00 0.00 2.32
3415 3483 1.954146 CCCAACACCACACTCGTCG 60.954 63.158 0.00 0.00 0.00 5.12
3417 3485 2.279918 AACACCACACTCGTCGCC 60.280 61.111 0.00 0.00 0.00 5.54
3418 3486 3.083848 AACACCACACTCGTCGCCA 62.084 57.895 0.00 0.00 0.00 5.69
3457 3525 1.079750 GTTGTGGGAGAGAGCGGTC 60.080 63.158 6.48 6.48 0.00 4.79
3459 3527 3.063084 GTGGGAGAGAGCGGTCGT 61.063 66.667 9.28 0.00 0.00 4.34
3462 3530 2.716864 GGAGAGAGCGGTCGTAGC 59.283 66.667 9.28 0.47 0.00 3.58
3501 3571 6.561070 ACAACATAGGATAAGGTGCCCTAATA 59.439 38.462 0.00 0.00 36.28 0.98
3509 3579 1.134491 AGGTGCCCTAATACGTTCTGC 60.134 52.381 0.00 0.00 28.47 4.26
3531 3601 4.303282 CTTGGGTTTACATGGAAAAACGG 58.697 43.478 4.20 0.00 36.63 4.44
3540 3610 9.843334 GTTTACATGGAAAAACGGAATACATTA 57.157 29.630 4.20 0.00 0.00 1.90
3607 3677 5.954922 TGCGTTCATAATTTATCGAAACACG 59.045 36.000 0.00 0.00 44.09 4.49
3608 3678 5.391433 GCGTTCATAATTTATCGAAACACGG 59.609 40.000 0.00 0.00 42.82 4.94
3619 3689 8.531622 TTTATCGAAACACGGACAATAACTTA 57.468 30.769 0.00 0.00 42.82 2.24
3621 3691 4.925054 TCGAAACACGGACAATAACTTAGG 59.075 41.667 0.00 0.00 42.82 2.69
3628 3698 4.041938 ACGGACAATAACTTAGGGGTTCAA 59.958 41.667 0.00 0.00 0.00 2.69
3646 3716 8.464404 GGGGTTCAAGAGTGGTAATTTTAATAC 58.536 37.037 0.00 0.00 0.00 1.89
3668 3738 8.728088 ATACAATTTTCTTAAGCTTGTGAACG 57.272 30.769 9.86 4.88 32.66 3.95
3670 3740 4.893424 TTTTCTTAAGCTTGTGAACGCT 57.107 36.364 9.86 0.00 38.30 5.07
3684 3754 7.700656 GCTTGTGAACGCTTAATATGGTAATTT 59.299 33.333 0.00 0.00 0.00 1.82
3810 3885 7.927048 TGTCAGATTGAAGCATTGATCTTATG 58.073 34.615 0.00 0.00 28.48 1.90
3811 3886 7.555195 TGTCAGATTGAAGCATTGATCTTATGT 59.445 33.333 9.24 0.00 28.48 2.29
3854 3932 9.905713 ATTTAGAATAGTAACTTGCCAAGATGA 57.094 29.630 12.25 0.00 0.00 2.92
3971 4050 8.749354 AGAACTTTAGTTGTGTTTCCTTTCATT 58.251 29.630 0.00 0.00 38.56 2.57
3974 4053 9.719355 ACTTTAGTTGTGTTTCCTTTCATTTTT 57.281 25.926 0.00 0.00 0.00 1.94
3975 4054 9.971744 CTTTAGTTGTGTTTCCTTTCATTTTTG 57.028 29.630 0.00 0.00 0.00 2.44
3987 4066 7.374272 TCCTTTCATTTTTGAATTACATCGCA 58.626 30.769 0.00 0.00 0.00 5.10
3994 4073 2.642427 TGAATTACATCGCAGCATGGT 58.358 42.857 0.00 0.00 35.86 3.55
4006 4085 5.424757 TCGCAGCATGGTTTAGTTATTAGT 58.575 37.500 0.00 0.00 35.86 2.24
4022 4101 8.613060 AGTTATTAGTGATGCACATATGGAAG 57.387 34.615 7.80 0.00 36.74 3.46
4041 4120 5.014202 GGAAGGGGAACAATTAAGCTTACA 58.986 41.667 5.45 0.00 0.00 2.41
4053 4132 9.705290 ACAATTAAGCTTACAATGTAAAAAGGG 57.295 29.630 5.45 0.00 0.00 3.95
4054 4133 9.150348 CAATTAAGCTTACAATGTAAAAAGGGG 57.850 33.333 5.45 0.00 0.00 4.79
4128 4214 1.394917 CGGAAAACTCTGCGATTCCAG 59.605 52.381 4.48 0.00 41.11 3.86
4129 4215 2.427506 GGAAAACTCTGCGATTCCAGT 58.572 47.619 0.00 0.00 40.81 4.00
4135 4221 3.027412 ACTCTGCGATTCCAGTAGTGAT 58.973 45.455 0.00 0.00 34.47 3.06
4141 4227 3.492656 GCGATTCCAGTAGTGATAGCCAA 60.493 47.826 0.00 0.00 0.00 4.52
4142 4228 4.302455 CGATTCCAGTAGTGATAGCCAAG 58.698 47.826 0.00 0.00 0.00 3.61
4143 4229 4.038042 CGATTCCAGTAGTGATAGCCAAGA 59.962 45.833 0.00 0.00 0.00 3.02
4144 4230 5.451937 CGATTCCAGTAGTGATAGCCAAGAA 60.452 44.000 0.00 0.00 0.00 2.52
4145 4231 4.737855 TCCAGTAGTGATAGCCAAGAAC 57.262 45.455 0.00 0.00 0.00 3.01
4146 4232 3.130516 TCCAGTAGTGATAGCCAAGAACG 59.869 47.826 0.00 0.00 0.00 3.95
4148 4234 4.106197 CAGTAGTGATAGCCAAGAACGAC 58.894 47.826 0.00 0.00 0.00 4.34
4149 4235 2.279582 AGTGATAGCCAAGAACGACG 57.720 50.000 0.00 0.00 0.00 5.12
4159 4246 3.492137 GCCAAGAACGACGGAAGGTATAT 60.492 47.826 0.00 0.00 0.00 0.86
4188 4275 4.079787 AGGGTTTATGTGTACAGCATGGAT 60.080 41.667 16.42 0.22 43.62 3.41
4193 4280 6.866010 TTATGTGTACAGCATGGATCATTC 57.134 37.500 16.42 0.00 43.62 2.67
4194 4281 3.197265 TGTGTACAGCATGGATCATTCG 58.803 45.455 0.00 0.00 43.62 3.34
4200 4287 1.140452 AGCATGGATCATTCGCACTCT 59.860 47.619 0.00 0.00 0.00 3.24
4202 4289 2.735663 GCATGGATCATTCGCACTCTAG 59.264 50.000 0.00 0.00 0.00 2.43
4221 4308 0.822164 GCTATCCACACCCACTACGT 59.178 55.000 0.00 0.00 0.00 3.57
4223 4310 2.034305 GCTATCCACACCCACTACGTAG 59.966 54.545 20.97 20.97 0.00 3.51
4228 4315 3.696051 TCCACACCCACTACGTAGTTATC 59.304 47.826 25.35 0.00 37.78 1.75
4233 4320 2.889678 CCCACTACGTAGTTATCCCCTC 59.110 54.545 25.35 0.00 37.78 4.30
4235 4322 3.568853 CCACTACGTAGTTATCCCCTCTG 59.431 52.174 25.35 10.10 37.78 3.35
4244 4331 3.051803 AGTTATCCCCTCTGACTCCATCA 60.052 47.826 0.00 0.00 35.45 3.07
4249 4336 1.134461 CCCTCTGACTCCATCAAGCAG 60.134 57.143 0.00 0.00 36.69 4.24
4256 4343 5.046376 TCTGACTCCATCAAGCAGAAACATA 60.046 40.000 0.00 0.00 36.69 2.29
4259 4346 4.397417 ACTCCATCAAGCAGAAACATAAGC 59.603 41.667 0.00 0.00 0.00 3.09
4266 4353 1.453155 CAGAAACATAAGCCGTGCCT 58.547 50.000 0.00 0.00 0.00 4.75
4291 4378 1.793414 ATGGGCCAGGAATAAAAGCC 58.207 50.000 13.78 0.00 43.09 4.35
4316 4403 2.758423 TGCTTCTATCACGCTAACAGGA 59.242 45.455 0.00 0.00 0.00 3.86
4317 4404 3.384789 TGCTTCTATCACGCTAACAGGAT 59.615 43.478 0.00 0.00 0.00 3.24
4321 4408 5.592104 TCTATCACGCTAACAGGATGAAA 57.408 39.130 0.00 0.00 39.69 2.69
4325 4412 2.483877 CACGCTAACAGGATGAAAAGCA 59.516 45.455 0.00 0.00 39.69 3.91
4327 4414 2.483877 CGCTAACAGGATGAAAAGCACA 59.516 45.455 0.00 0.00 39.69 4.57
4332 4419 1.466167 CAGGATGAAAAGCACAGGTCG 59.534 52.381 0.00 0.00 39.69 4.79
4352 4439 2.298610 GTTCCTGCCCTAATTAGCCAC 58.701 52.381 6.99 0.00 0.00 5.01
4355 4442 1.771255 CCTGCCCTAATTAGCCACTCT 59.229 52.381 6.99 0.00 0.00 3.24
4356 4443 2.972713 CCTGCCCTAATTAGCCACTCTA 59.027 50.000 6.99 0.00 0.00 2.43
4360 4448 3.802675 GCCCTAATTAGCCACTCTAACCG 60.803 52.174 6.99 0.00 39.86 4.44
4365 4453 7.439381 CCTAATTAGCCACTCTAACCGAAATA 58.561 38.462 6.99 0.00 39.86 1.40
4367 4455 5.664294 TTAGCCACTCTAACCGAAATACA 57.336 39.130 0.00 0.00 32.57 2.29
4378 4466 8.014070 TCTAACCGAAATACATCACTTATCCA 57.986 34.615 0.00 0.00 0.00 3.41
4383 4471 5.820423 CGAAATACATCACTTATCCAACCCA 59.180 40.000 0.00 0.00 0.00 4.51
4385 4473 7.148154 CGAAATACATCACTTATCCAACCCAAA 60.148 37.037 0.00 0.00 0.00 3.28
4412 4500 8.619146 AAAATACATCATTGCATTTAGTGTCG 57.381 30.769 0.00 0.00 30.29 4.35
4413 4501 4.621068 ACATCATTGCATTTAGTGTCGG 57.379 40.909 0.00 0.00 0.00 4.79
4414 4502 4.009675 ACATCATTGCATTTAGTGTCGGT 58.990 39.130 0.00 0.00 0.00 4.69
4415 4503 5.182487 ACATCATTGCATTTAGTGTCGGTA 58.818 37.500 0.00 0.00 0.00 4.02
4416 4504 5.064707 ACATCATTGCATTTAGTGTCGGTAC 59.935 40.000 0.00 0.00 0.00 3.34
4417 4505 4.827692 TCATTGCATTTAGTGTCGGTACT 58.172 39.130 0.00 0.00 34.71 2.73
4418 4506 5.242434 TCATTGCATTTAGTGTCGGTACTT 58.758 37.500 0.00 0.00 32.19 2.24
4419 4507 5.350365 TCATTGCATTTAGTGTCGGTACTTC 59.650 40.000 0.00 0.00 32.19 3.01
4420 4508 3.592059 TGCATTTAGTGTCGGTACTTCC 58.408 45.455 0.00 0.00 32.19 3.46
4429 4517 4.762825 GGTACTTCCGTGTGCACA 57.237 55.556 17.42 17.42 0.00 4.57
4452 4540 4.947388 ACGTTCCTATATTTGGTGCAATGT 59.053 37.500 0.00 0.00 0.00 2.71
4467 4555 9.887629 TTGGTGCAATGTCATTATTTCATATTT 57.112 25.926 0.00 0.00 0.00 1.40
4468 4556 9.887629 TGGTGCAATGTCATTATTTCATATTTT 57.112 25.926 0.00 0.00 0.00 1.82
4474 4562 9.850198 AATGTCATTATTTCATATTTTTGGGGG 57.150 29.630 0.00 0.00 0.00 5.40
4475 4563 8.615360 TGTCATTATTTCATATTTTTGGGGGA 57.385 30.769 0.00 0.00 0.00 4.81
4476 4564 9.051259 TGTCATTATTTCATATTTTTGGGGGAA 57.949 29.630 0.00 0.00 0.00 3.97
4479 4567 9.287373 CATTATTTCATATTTTTGGGGGAATGG 57.713 33.333 0.00 0.00 0.00 3.16
4480 4568 4.769345 TTCATATTTTTGGGGGAATGGC 57.231 40.909 0.00 0.00 0.00 4.40
4481 4569 3.729108 TCATATTTTTGGGGGAATGGCA 58.271 40.909 0.00 0.00 0.00 4.92
4482 4570 3.710677 TCATATTTTTGGGGGAATGGCAG 59.289 43.478 0.00 0.00 0.00 4.85
4483 4571 1.288188 ATTTTTGGGGGAATGGCAGG 58.712 50.000 0.00 0.00 0.00 4.85
4484 4572 0.192064 TTTTTGGGGGAATGGCAGGA 59.808 50.000 0.00 0.00 0.00 3.86
4485 4573 0.417035 TTTTGGGGGAATGGCAGGAT 59.583 50.000 0.00 0.00 0.00 3.24
4486 4574 1.313889 TTTGGGGGAATGGCAGGATA 58.686 50.000 0.00 0.00 0.00 2.59
4487 4575 1.313889 TTGGGGGAATGGCAGGATAA 58.686 50.000 0.00 0.00 0.00 1.75
4488 4576 1.313889 TGGGGGAATGGCAGGATAAA 58.686 50.000 0.00 0.00 0.00 1.40
4489 4577 1.865595 TGGGGGAATGGCAGGATAAAT 59.134 47.619 0.00 0.00 0.00 1.40
4490 4578 2.249743 TGGGGGAATGGCAGGATAAATT 59.750 45.455 0.00 0.00 0.00 1.82
4491 4579 2.899900 GGGGGAATGGCAGGATAAATTC 59.100 50.000 0.00 0.00 0.00 2.17
4492 4580 3.438520 GGGGGAATGGCAGGATAAATTCT 60.439 47.826 0.00 0.00 31.20 2.40
4493 4581 4.226384 GGGGAATGGCAGGATAAATTCTT 58.774 43.478 0.00 0.00 31.20 2.52
4494 4582 4.039609 GGGGAATGGCAGGATAAATTCTTG 59.960 45.833 0.00 0.00 34.65 3.02
4495 4583 4.895297 GGGAATGGCAGGATAAATTCTTGA 59.105 41.667 0.00 0.00 33.37 3.02
4496 4584 5.221322 GGGAATGGCAGGATAAATTCTTGAC 60.221 44.000 0.00 0.00 39.89 3.18
4500 4588 6.662865 TGGCAGGATAAATTCTTGACAAAA 57.337 33.333 0.00 0.00 45.77 2.44
4501 4589 6.454795 TGGCAGGATAAATTCTTGACAAAAC 58.545 36.000 0.00 0.00 45.77 2.43
4502 4590 6.041409 TGGCAGGATAAATTCTTGACAAAACA 59.959 34.615 0.00 0.00 45.77 2.83
4503 4591 6.928492 GGCAGGATAAATTCTTGACAAAACAA 59.072 34.615 0.00 0.00 39.27 2.83
4504 4592 7.440856 GGCAGGATAAATTCTTGACAAAACAAA 59.559 33.333 0.00 0.00 39.27 2.83
4505 4593 8.992073 GCAGGATAAATTCTTGACAAAACAAAT 58.008 29.630 0.00 0.00 33.37 2.32
4588 4829 5.653507 TGCAAACAGATAAATGGAATGAGC 58.346 37.500 0.00 0.00 0.00 4.26
4605 4846 2.094182 TGAGCAACCAGTTCGGAGATAC 60.094 50.000 0.00 0.00 38.63 2.24
4612 4853 1.204704 CAGTTCGGAGATACTGTGGCA 59.795 52.381 1.07 0.00 39.23 4.92
4614 4855 2.159043 AGTTCGGAGATACTGTGGCATG 60.159 50.000 0.00 0.00 35.04 4.06
4627 4868 3.453424 TGTGGCATGTGACGACATATAC 58.547 45.455 0.00 0.00 41.12 1.47
4666 4907 4.775236 AGATAATGGTTTGGCTCTCTGAC 58.225 43.478 0.00 0.00 0.00 3.51
4696 4938 0.680618 TGCTGCAAACCTTTGATGGG 59.319 50.000 0.00 0.00 40.55 4.00
4711 4953 2.829720 TGATGGGCGTAGTAGAAGTTGT 59.170 45.455 0.00 0.00 0.00 3.32
4731 4973 2.284417 GTCGGTCGATTACATTTGAGGC 59.716 50.000 0.00 0.00 0.00 4.70
4734 4976 3.374058 CGGTCGATTACATTTGAGGCTTT 59.626 43.478 0.00 0.00 0.00 3.51
4751 4993 3.678548 GGCTTTTATGTCGAGTCGAACTT 59.321 43.478 18.42 11.76 37.72 2.66
4755 4997 6.669268 GCTTTTATGTCGAGTCGAACTTAACC 60.669 42.308 18.42 3.31 37.72 2.85
4757 4999 3.549299 TGTCGAGTCGAACTTAACCTC 57.451 47.619 18.42 1.74 37.72 3.85
4764 5006 3.188873 AGTCGAACTTAACCTCTGAGTCG 59.811 47.826 3.66 4.75 0.00 4.18
4804 5046 2.618241 AGAAATGTGTGTGCATCGTTGT 59.382 40.909 0.00 0.00 0.00 3.32
4808 5050 1.740025 TGTGTGTGCATCGTTGTTTCA 59.260 42.857 0.00 0.00 0.00 2.69
4811 5053 4.035675 TGTGTGTGCATCGTTGTTTCATAA 59.964 37.500 0.00 0.00 0.00 1.90
4837 5079 7.899973 ACTGCTTTAACATTTCAATTCAGGAT 58.100 30.769 0.00 0.00 0.00 3.24
4841 5083 7.413328 GCTTTAACATTTCAATTCAGGATTGCC 60.413 37.037 0.00 0.00 43.93 4.52
4883 5125 6.092807 CCTTCAAGATTTGGTAGCACTACTTC 59.907 42.308 7.69 1.55 36.36 3.01
4885 5127 6.398918 TCAAGATTTGGTAGCACTACTTCTC 58.601 40.000 7.69 1.40 36.36 2.87
4894 5136 6.663953 TGGTAGCACTACTTCTCTTAGAATGT 59.336 38.462 7.69 0.00 33.13 2.71
4895 5137 7.148052 TGGTAGCACTACTTCTCTTAGAATGTC 60.148 40.741 7.69 0.00 33.13 3.06
4928 5170 5.560966 ATTCAAACTTGACAAACGTCACT 57.439 34.783 0.00 0.00 43.05 3.41
4957 5199 3.995199 TGCTTCGGATCATAGATCCAAC 58.005 45.455 22.04 10.71 38.08 3.77
4961 5203 5.277538 GCTTCGGATCATAGATCCAACAAAC 60.278 44.000 22.04 6.84 38.08 2.93
5035 5402 5.185454 TCTCCATGTTATCAATCTTTGCGT 58.815 37.500 0.00 0.00 0.00 5.24
5052 5419 0.443869 CGTCGTGAAATCCTGCCAAG 59.556 55.000 0.00 0.00 0.00 3.61
5058 5425 0.453390 GAAATCCTGCCAAGGCTTCG 59.547 55.000 12.96 0.00 44.11 3.79
5080 5447 3.492011 GGTACAGAAACCGCGGTAATATG 59.508 47.826 34.44 29.98 0.00 1.78
5087 5454 1.891150 ACCGCGGTAATATGGGAGTAG 59.109 52.381 33.34 0.00 0.00 2.57
5088 5455 1.891150 CCGCGGTAATATGGGAGTAGT 59.109 52.381 19.50 0.00 0.00 2.73
5095 5462 4.261909 GGTAATATGGGAGTAGTGACACCG 60.262 50.000 0.84 0.00 37.20 4.94
5105 5472 1.589803 AGTGACACCGCCACTTTTAC 58.410 50.000 0.84 0.00 41.68 2.01
5108 5475 2.097791 GTGACACCGCCACTTTTACAAA 59.902 45.455 0.00 0.00 0.00 2.83
5114 5481 2.544694 CCGCCACTTTTACAAATGCACA 60.545 45.455 0.00 0.00 0.00 4.57
5115 5482 3.119291 CGCCACTTTTACAAATGCACAA 58.881 40.909 0.00 0.00 0.00 3.33
5139 5506 7.750229 AACTTGATTAGCTTCATGAGTTTCA 57.250 32.000 7.98 0.00 27.38 2.69
5171 5538 2.445145 TCAGTCACCCATCCAAAAGGAA 59.555 45.455 0.00 0.00 0.00 3.36
5172 5539 3.075882 TCAGTCACCCATCCAAAAGGAAT 59.924 43.478 0.00 0.00 0.00 3.01
5195 5562 5.487433 TGGATGTCGTGATGTTGAAAGTAT 58.513 37.500 0.00 0.00 0.00 2.12
5198 5565 6.742718 GGATGTCGTGATGTTGAAAGTATTTG 59.257 38.462 0.00 0.00 39.27 2.32
5206 5573 2.559231 GTTGAAAGTATTTGGGCCGGAA 59.441 45.455 5.05 0.00 39.27 4.30
5209 5576 3.835395 TGAAAGTATTTGGGCCGGAAAAT 59.165 39.130 5.05 10.47 39.27 1.82
5219 5586 2.698274 GGGCCGGAAAATATGTTGGAAT 59.302 45.455 5.05 0.00 0.00 3.01
5229 5598 6.966534 AAATATGTTGGAATTGCCCTAGAG 57.033 37.500 0.00 0.00 34.97 2.43
5338 5708 6.693315 ACGAAAATCAAAAGGTTCAGAGAA 57.307 33.333 0.00 0.00 0.00 2.87
5363 5733 6.915544 AACTCATATGCACATGTAGACTTG 57.084 37.500 4.61 0.00 0.00 3.16
5364 5734 6.225981 ACTCATATGCACATGTAGACTTGA 57.774 37.500 4.61 0.00 0.00 3.02
5396 5766 9.582223 GTAAAATAAGATTATTAGTCTGTGCGC 57.418 33.333 0.00 0.00 33.25 6.09
5397 5767 8.438676 AAAATAAGATTATTAGTCTGTGCGCT 57.561 30.769 9.73 0.00 33.25 5.92
5400 5770 1.651987 TTATTAGTCTGTGCGCTGCC 58.348 50.000 9.73 0.00 0.00 4.85
5436 5806 2.629336 CCATCCAAGGGAGCTCTTAC 57.371 55.000 14.64 4.59 34.05 2.34
5451 5821 1.855213 CTTACTTGCCGCTTGCTGCA 61.855 55.000 7.58 7.58 43.06 4.41
5471 5842 1.202830 ACAAATAGTGACCCCAACGCA 60.203 47.619 0.00 0.00 0.00 5.24
5473 5844 0.672401 AATAGTGACCCCAACGCACG 60.672 55.000 0.00 0.00 37.60 5.34
5490 5861 0.834612 ACGGACAACTTCCAACTGGA 59.165 50.000 0.00 0.00 46.29 3.86
5503 5874 0.902531 AACTGGACCGACCCATGTAG 59.097 55.000 0.00 0.00 38.00 2.74
5510 5881 1.134401 ACCGACCCATGTAGCAATCTG 60.134 52.381 0.00 0.00 0.00 2.90
5530 5901 1.852895 GCCACGAGCGACTTAATGTAG 59.147 52.381 0.00 0.00 0.00 2.74
5531 5902 2.460918 CCACGAGCGACTTAATGTAGG 58.539 52.381 0.00 0.00 0.00 3.18
5532 5903 2.098607 CCACGAGCGACTTAATGTAGGA 59.901 50.000 0.00 0.00 0.00 2.94
5537 5908 4.352887 GAGCGACTTAATGTAGGAGTGTC 58.647 47.826 0.00 0.00 0.00 3.67
5538 5909 3.762288 AGCGACTTAATGTAGGAGTGTCA 59.238 43.478 0.00 0.00 0.00 3.58
5556 5927 7.228314 AGTGTCATACTGTAGCAGTTTCTTA 57.772 36.000 7.11 0.00 42.59 2.10
5564 5935 6.765403 ACTGTAGCAGTTTCTTATTGTACCA 58.235 36.000 0.00 0.00 42.59 3.25
5566 5937 5.642063 TGTAGCAGTTTCTTATTGTACCAGC 59.358 40.000 0.00 0.00 0.00 4.85
5567 5938 4.010349 AGCAGTTTCTTATTGTACCAGCC 58.990 43.478 0.00 0.00 0.00 4.85
5575 5946 1.788518 ATTGTACCAGCCTGGCACCA 61.789 55.000 22.65 0.00 42.67 4.17
5587 5958 3.688414 GCCTGGCACCATAATAGTTCCTT 60.688 47.826 15.17 0.00 0.00 3.36
5588 5959 4.536765 CCTGGCACCATAATAGTTCCTTT 58.463 43.478 0.00 0.00 0.00 3.11
5642 6014 7.468141 AAAAACCTTCAGAGAAGTGAACTTT 57.532 32.000 6.08 0.00 36.11 2.66
5643 6015 7.468141 AAAACCTTCAGAGAAGTGAACTTTT 57.532 32.000 6.08 0.00 36.11 2.27
5644 6016 7.468141 AAACCTTCAGAGAAGTGAACTTTTT 57.532 32.000 6.08 0.00 36.11 1.94
5645 6017 8.575649 AAACCTTCAGAGAAGTGAACTTTTTA 57.424 30.769 6.08 0.00 36.11 1.52
5646 6018 8.575649 AACCTTCAGAGAAGTGAACTTTTTAA 57.424 30.769 6.08 0.00 36.11 1.52
5647 6019 8.575649 ACCTTCAGAGAAGTGAACTTTTTAAA 57.424 30.769 6.08 0.00 36.11 1.52
5648 6020 9.020731 ACCTTCAGAGAAGTGAACTTTTTAAAA 57.979 29.630 0.00 0.00 36.11 1.52
5649 6021 9.855021 CCTTCAGAGAAGTGAACTTTTTAAAAA 57.145 29.630 12.62 12.62 36.11 1.94
5652 6024 9.301153 TCAGAGAAGTGAACTTTTTAAAAATGC 57.699 29.630 13.55 7.11 36.11 3.56
5653 6025 8.542953 CAGAGAAGTGAACTTTTTAAAAATGCC 58.457 33.333 13.55 6.61 36.11 4.40
5654 6026 7.435192 AGAGAAGTGAACTTTTTAAAAATGCCG 59.565 33.333 13.55 5.16 36.11 5.69
5655 6027 7.262048 AGAAGTGAACTTTTTAAAAATGCCGA 58.738 30.769 13.55 0.00 36.11 5.54
5656 6028 7.762159 AGAAGTGAACTTTTTAAAAATGCCGAA 59.238 29.630 13.55 0.00 36.11 4.30
5657 6029 7.835634 AGTGAACTTTTTAAAAATGCCGAAA 57.164 28.000 13.55 0.00 0.00 3.46
5658 6030 8.432110 AGTGAACTTTTTAAAAATGCCGAAAT 57.568 26.923 13.55 0.00 0.00 2.17
5659 6031 8.334632 AGTGAACTTTTTAAAAATGCCGAAATG 58.665 29.630 13.55 2.17 0.00 2.32
5660 6032 8.119845 GTGAACTTTTTAAAAATGCCGAAATGT 58.880 29.630 13.55 2.76 0.00 2.71
5661 6033 8.669243 TGAACTTTTTAAAAATGCCGAAATGTT 58.331 25.926 13.55 10.41 33.25 2.71
5662 6034 9.497030 GAACTTTTTAAAAATGCCGAAATGTTT 57.503 25.926 13.55 0.00 31.78 2.83
5663 6035 9.497030 AACTTTTTAAAAATGCCGAAATGTTTC 57.503 25.926 13.55 0.00 29.10 2.78
5664 6036 8.888716 ACTTTTTAAAAATGCCGAAATGTTTCT 58.111 25.926 13.55 0.00 35.07 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.532138 CACAAGCTGTGGTTTGTCG 57.468 52.632 8.03 0.00 44.27 4.35
27 28 0.961019 TGTTGGCTGGAGAATGCAAC 59.039 50.000 0.00 0.00 34.45 4.17
28 29 1.614903 CTTGTTGGCTGGAGAATGCAA 59.385 47.619 0.00 0.00 34.45 4.08
103 104 2.872557 CCAGCCAAGTGTGCATCG 59.127 61.111 0.00 0.00 0.00 3.84
146 147 7.209471 ACACGAAAGCTTATCACCAAATTTA 57.791 32.000 0.00 0.00 0.00 1.40
178 179 7.227512 GCTAGCAAGGATTACATATGAAGTGTT 59.772 37.037 10.63 0.00 0.00 3.32
179 180 6.708054 GCTAGCAAGGATTACATATGAAGTGT 59.292 38.462 10.63 0.00 0.00 3.55
180 181 6.933521 AGCTAGCAAGGATTACATATGAAGTG 59.066 38.462 18.83 0.00 0.00 3.16
183 184 7.227314 CACAAGCTAGCAAGGATTACATATGAA 59.773 37.037 18.83 0.00 0.00 2.57
184 185 6.707608 CACAAGCTAGCAAGGATTACATATGA 59.292 38.462 18.83 0.00 0.00 2.15
185 186 6.567321 GCACAAGCTAGCAAGGATTACATATG 60.567 42.308 18.83 0.00 37.91 1.78
186 187 5.471456 GCACAAGCTAGCAAGGATTACATAT 59.529 40.000 18.83 0.00 37.91 1.78
187 188 4.816385 GCACAAGCTAGCAAGGATTACATA 59.184 41.667 18.83 0.00 37.91 2.29
203 204 4.500703 CTTGTACGTACATAGCACAAGC 57.499 45.455 27.82 0.00 39.54 4.01
233 234 9.573166 CCATTTGACCTGGAGTATAATTGATAA 57.427 33.333 0.00 0.00 35.70 1.75
265 266 3.434453 CCGGGTAATCCAAAAGGCTATCA 60.434 47.826 0.00 0.00 34.36 2.15
266 267 3.146847 CCGGGTAATCCAAAAGGCTATC 58.853 50.000 0.00 0.00 34.36 2.08
282 283 3.244181 ACACTTAACGTATTTCACCGGGT 60.244 43.478 6.32 0.00 0.00 5.28
283 284 3.328505 ACACTTAACGTATTTCACCGGG 58.671 45.455 6.32 0.00 0.00 5.73
298 299 3.788227 AGGCATCTCACCAAACACTTA 57.212 42.857 0.00 0.00 0.00 2.24
323 324 5.221126 GGCATCCAACTATTTGATCACCTTC 60.221 44.000 0.00 0.00 34.24 3.46
378 379 5.230726 GCAAGAACACAAATTCTGTTCACTG 59.769 40.000 22.01 19.24 46.77 3.66
380 381 5.101628 TGCAAGAACACAAATTCTGTTCAC 58.898 37.500 22.01 14.85 46.77 3.18
417 418 2.861462 TCTTTTGCCCACGTTTTGAG 57.139 45.000 0.00 0.00 0.00 3.02
432 433 8.201464 AGAAATAACGGAACCAAACATTTCTTT 58.799 29.630 0.00 0.00 37.77 2.52
442 443 5.706833 GGGAAAGTAGAAATAACGGAACCAA 59.293 40.000 0.00 0.00 0.00 3.67
450 451 7.121611 TCCATTTTCCGGGAAAGTAGAAATAAC 59.878 37.037 20.60 0.00 32.93 1.89
467 468 3.364964 CGCACACAGTAACTCCATTTTCC 60.365 47.826 0.00 0.00 0.00 3.13
495 496 4.680237 TGAACTGGTCCGCGCAGG 62.680 66.667 8.75 10.32 42.97 4.85
496 497 1.781025 TTTTGAACTGGTCCGCGCAG 61.781 55.000 8.75 5.50 0.00 5.18
500 501 1.281656 CGGTTTTGAACTGGTCCGC 59.718 57.895 0.00 0.00 34.07 5.54
501 502 0.306533 CACGGTTTTGAACTGGTCCG 59.693 55.000 4.81 0.00 42.15 4.79
502 503 1.064952 CACACGGTTTTGAACTGGTCC 59.935 52.381 4.81 0.00 42.15 4.46
503 504 2.011222 TCACACGGTTTTGAACTGGTC 58.989 47.619 4.81 0.00 42.15 4.02
504 505 1.741145 GTCACACGGTTTTGAACTGGT 59.259 47.619 4.81 0.00 42.15 4.00
505 506 2.014128 AGTCACACGGTTTTGAACTGG 58.986 47.619 4.81 0.00 42.15 4.00
506 507 5.418310 AATAGTCACACGGTTTTGAACTG 57.582 39.130 0.00 0.00 43.50 3.16
507 508 6.285990 ACTAATAGTCACACGGTTTTGAACT 58.714 36.000 0.00 0.00 0.00 3.01
508 509 6.535274 ACTAATAGTCACACGGTTTTGAAC 57.465 37.500 0.00 0.00 0.00 3.18
509 510 7.436118 AGTACTAATAGTCACACGGTTTTGAA 58.564 34.615 0.00 0.00 0.00 2.69
510 511 6.985117 AGTACTAATAGTCACACGGTTTTGA 58.015 36.000 0.00 0.00 0.00 2.69
511 512 8.025445 ACTAGTACTAATAGTCACACGGTTTTG 58.975 37.037 3.76 0.00 0.00 2.44
512 513 8.115490 ACTAGTACTAATAGTCACACGGTTTT 57.885 34.615 3.76 0.00 0.00 2.43
513 514 7.693969 ACTAGTACTAATAGTCACACGGTTT 57.306 36.000 3.76 0.00 0.00 3.27
514 515 7.693969 AACTAGTACTAATAGTCACACGGTT 57.306 36.000 3.76 0.00 32.29 4.44
515 516 8.792830 TTAACTAGTACTAATAGTCACACGGT 57.207 34.615 3.76 0.00 32.29 4.83
664 674 5.446340 GGAAAGCAAACAAACTTTTCTGCAG 60.446 40.000 7.63 7.63 36.28 4.41
681 691 6.723298 TTCAGTAAAATTGGAAGGAAAGCA 57.277 33.333 0.00 0.00 0.00 3.91
691 701 9.090692 CCTGCTCATTTATTTCAGTAAAATTGG 57.909 33.333 0.00 0.00 38.53 3.16
703 713 5.852282 ATTTACGGCCTGCTCATTTATTT 57.148 34.783 0.00 0.00 0.00 1.40
719 729 4.142403 ACTGGCACATCCATTGAATTTACG 60.142 41.667 0.00 0.00 45.50 3.18
758 768 4.398358 TGTGTAATGTCTCGTAGCTAGCTT 59.602 41.667 24.88 7.25 0.00 3.74
822 832 7.784037 TGCCATGATATTGTGCTAAAATTCTT 58.216 30.769 0.00 0.00 0.00 2.52
887 897 6.310020 GCTTTTGCGTCTTCTCAAAATATG 57.690 37.500 0.00 0.00 40.19 1.78
969 979 4.743493 ACTTAAACACAAAGCAAGGTGTG 58.257 39.130 7.86 7.58 46.82 3.82
977 987 4.390297 TGGCACAAAACTTAAACACAAAGC 59.610 37.500 0.00 0.00 31.92 3.51
1058 1077 2.421399 GCCTTGGATCCCTTGCTGC 61.421 63.158 9.90 0.00 0.00 5.25
1061 1080 1.755783 CTGGCCTTGGATCCCTTGC 60.756 63.158 9.90 8.60 0.00 4.01
1141 1160 5.069781 CCTTAGATCTACAACCCTCCTCTTG 59.930 48.000 0.67 0.00 0.00 3.02
1146 1165 3.655384 ACCCTTAGATCTACAACCCTCC 58.345 50.000 0.67 0.00 0.00 4.30
1203 1222 2.664185 CCGCCTGATCTGCCATCG 60.664 66.667 0.00 0.00 0.00 3.84
1204 1223 2.976903 GCCGCCTGATCTGCCATC 60.977 66.667 0.00 0.00 0.00 3.51
1205 1224 4.575973 GGCCGCCTGATCTGCCAT 62.576 66.667 0.71 0.00 43.46 4.40
1248 1267 2.653448 CTCTCGCGCTCCGTGATG 60.653 66.667 5.56 0.00 45.17 3.07
1263 1282 4.292178 CTCATCCGCCTCCGCCTC 62.292 72.222 0.00 0.00 0.00 4.70
1336 1355 4.569653 CCCTAGCTAGGTATCTGCTGATCT 60.570 50.000 33.00 4.84 42.03 2.75
1337 1356 3.699038 CCCTAGCTAGGTATCTGCTGATC 59.301 52.174 33.00 2.42 42.03 2.92
1338 1357 3.076785 ACCCTAGCTAGGTATCTGCTGAT 59.923 47.826 33.00 11.14 42.03 2.90
1340 1359 2.823154 GACCCTAGCTAGGTATCTGCTG 59.177 54.545 33.00 19.70 42.03 4.41
1344 1363 6.828307 ATATACGACCCTAGCTAGGTATCT 57.172 41.667 33.00 21.20 42.03 1.98
1348 1367 5.339861 CCCTAATATACGACCCTAGCTAGGT 60.340 48.000 33.00 22.77 42.03 3.08
1349 1368 5.131784 CCCTAATATACGACCCTAGCTAGG 58.868 50.000 30.05 30.05 43.25 3.02
1358 1377 4.256920 TCGACTAGCCCTAATATACGACC 58.743 47.826 0.00 0.00 0.00 4.79
1359 1378 5.276773 CGATCGACTAGCCCTAATATACGAC 60.277 48.000 10.26 0.00 0.00 4.34
1363 1382 5.737860 TGACGATCGACTAGCCCTAATATA 58.262 41.667 24.34 0.00 0.00 0.86
1380 1421 0.028242 GCGAGTGACGATCTGACGAT 59.972 55.000 0.00 0.00 45.77 3.73
1382 1423 0.179187 AAGCGAGTGACGATCTGACG 60.179 55.000 0.00 0.00 45.77 4.35
1406 1447 4.282195 ACTTGTCAACCTGAAACACCAAAA 59.718 37.500 0.00 0.00 0.00 2.44
1476 1517 3.691744 CTCCAGCTCGCTCACCGTC 62.692 68.421 0.00 0.00 38.35 4.79
1553 1594 2.360980 CTGAGGAGGAGACCCCGT 59.639 66.667 0.00 0.00 40.87 5.28
1615 1656 1.990060 AGATCCCACCACCCGACAG 60.990 63.158 0.00 0.00 0.00 3.51
1616 1657 2.121832 AGATCCCACCACCCGACA 59.878 61.111 0.00 0.00 0.00 4.35
1622 1663 1.078143 GTCTGCCAGATCCCACCAC 60.078 63.158 0.00 0.00 0.00 4.16
1626 1667 1.997311 CCCAGTCTGCCAGATCCCA 60.997 63.158 0.00 0.00 0.00 4.37
1707 1751 3.626924 GGCCCTGACCACGTCTGT 61.627 66.667 0.00 0.00 33.15 3.41
1753 1797 1.202325 GGACATGTGGATGTACGCGTA 60.202 52.381 16.41 16.41 43.22 4.42
1788 1832 3.081554 ACCATGGTGAGCACTCCC 58.918 61.111 18.99 0.00 0.00 4.30
1827 1871 3.179265 GTGACCACGTCGATGCCG 61.179 66.667 4.06 0.00 34.95 5.69
1865 1909 1.165270 GGTGTACATGCACTGGGAAC 58.835 55.000 0.00 0.00 39.21 3.62
1927 1971 1.000938 CCTGACCAAAACAGCAGAAGC 60.001 52.381 0.00 0.00 42.56 3.86
1928 1972 1.610522 CCCTGACCAAAACAGCAGAAG 59.389 52.381 0.00 0.00 34.47 2.85
1929 1973 1.214175 TCCCTGACCAAAACAGCAGAA 59.786 47.619 0.00 0.00 34.47 3.02
1956 2000 4.460263 CACCTATGTATAAGCCTGGCAAA 58.540 43.478 22.65 8.56 0.00 3.68
1972 2016 9.287373 GACTACTAGTAGTAATCTTGCACCTAT 57.713 37.037 30.80 6.85 45.63 2.57
1973 2017 8.270030 TGACTACTAGTAGTAATCTTGCACCTA 58.730 37.037 30.80 7.13 45.63 3.08
1990 2034 7.918033 CGGCCTCAATCATATTATGACTACTAG 59.082 40.741 8.51 3.35 43.01 2.57
1999 2043 7.285401 AGTTGTTTTCGGCCTCAATCATATTAT 59.715 33.333 0.00 0.00 0.00 1.28
2000 2044 6.601613 AGTTGTTTTCGGCCTCAATCATATTA 59.398 34.615 0.00 0.00 0.00 0.98
2001 2045 5.418840 AGTTGTTTTCGGCCTCAATCATATT 59.581 36.000 0.00 0.00 0.00 1.28
2002 2046 4.949856 AGTTGTTTTCGGCCTCAATCATAT 59.050 37.500 0.00 0.00 0.00 1.78
2067 2112 6.179756 AGATATGCACCAACACAACAAGATA 58.820 36.000 0.00 0.00 0.00 1.98
2102 2147 2.327325 TCCTGCAGGGAGGATATACC 57.673 55.000 32.23 0.00 39.58 2.73
2134 2179 6.534475 AGACCGACAAATTATAGTGTGGTA 57.466 37.500 0.00 0.00 32.71 3.25
2186 2231 8.911918 TCAAACTAGCCTACAAAAACATCTTA 57.088 30.769 0.00 0.00 0.00 2.10
2191 2236 6.148150 CCGTATCAAACTAGCCTACAAAAACA 59.852 38.462 0.00 0.00 0.00 2.83
2224 2269 6.220930 TGTTTCTAATCCGCAGATATACACC 58.779 40.000 0.00 0.00 30.42 4.16
2326 2371 3.838903 GGGGATCCTACGGTTTCTGATAT 59.161 47.826 12.58 0.00 0.00 1.63
2336 2381 0.957362 GACGTTAGGGGATCCTACGG 59.043 60.000 23.04 9.24 44.80 4.02
2342 2387 1.553308 CGTTTCGACGTTAGGGGATC 58.447 55.000 0.00 0.00 0.00 3.36
2401 2446 2.794350 AGCGCAAAAACAAGTTACATGC 59.206 40.909 11.47 7.19 0.00 4.06
2402 2447 5.457148 TGTAAGCGCAAAAACAAGTTACATG 59.543 36.000 11.47 0.00 0.00 3.21
2403 2448 5.583495 TGTAAGCGCAAAAACAAGTTACAT 58.417 33.333 11.47 0.00 0.00 2.29
2404 2449 4.982999 TGTAAGCGCAAAAACAAGTTACA 58.017 34.783 11.47 9.56 0.00 2.41
2405 2450 7.790861 ATATGTAAGCGCAAAAACAAGTTAC 57.209 32.000 11.47 6.81 0.00 2.50
2406 2451 9.332301 GTTATATGTAAGCGCAAAAACAAGTTA 57.668 29.630 11.47 0.00 0.00 2.24
2407 2452 8.079809 AGTTATATGTAAGCGCAAAAACAAGTT 58.920 29.630 11.47 0.00 0.00 2.66
2408 2453 7.590279 AGTTATATGTAAGCGCAAAAACAAGT 58.410 30.769 11.47 4.03 0.00 3.16
2409 2454 7.748683 TGAGTTATATGTAAGCGCAAAAACAAG 59.251 33.333 11.47 0.00 0.00 3.16
2410 2455 7.585867 TGAGTTATATGTAAGCGCAAAAACAA 58.414 30.769 11.47 0.21 0.00 2.83
2411 2456 7.135089 TGAGTTATATGTAAGCGCAAAAACA 57.865 32.000 11.47 8.45 0.00 2.83
2412 2457 7.908082 TCATGAGTTATATGTAAGCGCAAAAAC 59.092 33.333 11.47 1.96 0.00 2.43
2413 2458 7.980062 TCATGAGTTATATGTAAGCGCAAAAA 58.020 30.769 11.47 0.00 0.00 1.94
2414 2459 7.546778 TCATGAGTTATATGTAAGCGCAAAA 57.453 32.000 11.47 0.00 0.00 2.44
2415 2460 6.292865 GCTCATGAGTTATATGTAAGCGCAAA 60.293 38.462 23.38 0.00 0.00 3.68
2416 2461 5.177511 GCTCATGAGTTATATGTAAGCGCAA 59.822 40.000 23.38 0.00 0.00 4.85
2417 2462 4.686091 GCTCATGAGTTATATGTAAGCGCA 59.314 41.667 23.38 0.00 0.00 6.09
2418 2463 4.092091 GGCTCATGAGTTATATGTAAGCGC 59.908 45.833 23.38 0.00 0.00 5.92
2419 2464 5.119279 GTGGCTCATGAGTTATATGTAAGCG 59.881 44.000 23.38 0.00 0.00 4.68
2420 2465 5.409826 GGTGGCTCATGAGTTATATGTAAGC 59.590 44.000 23.38 5.65 0.00 3.09
2421 2466 6.763355 AGGTGGCTCATGAGTTATATGTAAG 58.237 40.000 23.38 0.00 0.00 2.34
2422 2467 6.326323 TGAGGTGGCTCATGAGTTATATGTAA 59.674 38.462 23.38 0.68 0.00 2.41
2423 2468 5.838521 TGAGGTGGCTCATGAGTTATATGTA 59.161 40.000 23.38 2.81 0.00 2.29
2424 2469 4.655649 TGAGGTGGCTCATGAGTTATATGT 59.344 41.667 23.38 3.51 0.00 2.29
2425 2470 5.219343 TGAGGTGGCTCATGAGTTATATG 57.781 43.478 23.38 0.00 0.00 1.78
2426 2471 6.155910 CCTATGAGGTGGCTCATGAGTTATAT 59.844 42.308 23.38 7.96 43.21 0.86
2427 2472 5.481824 CCTATGAGGTGGCTCATGAGTTATA 59.518 44.000 23.38 9.06 43.21 0.98
2428 2473 4.285517 CCTATGAGGTGGCTCATGAGTTAT 59.714 45.833 23.38 8.41 43.21 1.89
2429 2474 3.643320 CCTATGAGGTGGCTCATGAGTTA 59.357 47.826 23.38 10.42 43.21 2.24
2430 2475 2.437281 CCTATGAGGTGGCTCATGAGTT 59.563 50.000 23.38 5.22 43.21 3.01
2431 2476 2.045524 CCTATGAGGTGGCTCATGAGT 58.954 52.381 23.38 3.38 43.21 3.41
2432 2477 2.323599 TCCTATGAGGTGGCTCATGAG 58.676 52.381 18.84 18.84 43.21 2.90
2433 2478 2.435805 GTTCCTATGAGGTGGCTCATGA 59.564 50.000 0.00 0.00 43.21 3.07
2434 2479 2.171237 TGTTCCTATGAGGTGGCTCATG 59.829 50.000 0.00 0.00 43.21 3.07
2435 2480 2.171448 GTGTTCCTATGAGGTGGCTCAT 59.829 50.000 0.00 0.00 45.09 2.90
2436 2481 1.555075 GTGTTCCTATGAGGTGGCTCA 59.445 52.381 0.00 0.00 36.53 4.26
2437 2482 1.555075 TGTGTTCCTATGAGGTGGCTC 59.445 52.381 0.00 0.00 36.53 4.70
2438 2483 1.656587 TGTGTTCCTATGAGGTGGCT 58.343 50.000 0.00 0.00 36.53 4.75
2439 2484 2.489938 TTGTGTTCCTATGAGGTGGC 57.510 50.000 0.00 0.00 36.53 5.01
2440 2485 4.446371 GAGATTGTGTTCCTATGAGGTGG 58.554 47.826 0.00 0.00 36.53 4.61
2441 2486 4.080919 TGGAGATTGTGTTCCTATGAGGTG 60.081 45.833 0.00 0.00 36.53 4.00
2442 2487 4.104086 TGGAGATTGTGTTCCTATGAGGT 58.896 43.478 0.00 0.00 36.53 3.85
2443 2488 4.760530 TGGAGATTGTGTTCCTATGAGG 57.239 45.455 0.00 0.00 36.46 3.86
2444 2489 6.825213 TGATTTGGAGATTGTGTTCCTATGAG 59.175 38.462 0.00 0.00 34.48 2.90
2445 2490 6.599244 GTGATTTGGAGATTGTGTTCCTATGA 59.401 38.462 0.00 0.00 34.48 2.15
2446 2491 6.183360 GGTGATTTGGAGATTGTGTTCCTATG 60.183 42.308 0.00 0.00 34.48 2.23
2447 2492 5.888161 GGTGATTTGGAGATTGTGTTCCTAT 59.112 40.000 0.00 0.00 34.48 2.57
2448 2493 5.014123 AGGTGATTTGGAGATTGTGTTCCTA 59.986 40.000 0.00 0.00 34.48 2.94
2449 2494 4.082125 GGTGATTTGGAGATTGTGTTCCT 58.918 43.478 0.00 0.00 34.48 3.36
2450 2495 4.082125 AGGTGATTTGGAGATTGTGTTCC 58.918 43.478 0.00 0.00 0.00 3.62
2451 2496 5.010012 ACAAGGTGATTTGGAGATTGTGTTC 59.990 40.000 0.00 0.00 32.32 3.18
2452 2497 4.895297 ACAAGGTGATTTGGAGATTGTGTT 59.105 37.500 0.00 0.00 32.32 3.32
2453 2498 4.473444 ACAAGGTGATTTGGAGATTGTGT 58.527 39.130 0.00 0.00 32.32 3.72
2454 2499 4.520111 TGACAAGGTGATTTGGAGATTGTG 59.480 41.667 0.00 0.00 32.32 3.33
2455 2500 4.728772 TGACAAGGTGATTTGGAGATTGT 58.271 39.130 0.00 0.00 32.32 2.71
2456 2501 5.464168 GTTGACAAGGTGATTTGGAGATTG 58.536 41.667 0.00 0.00 32.32 2.67
2457 2502 4.524328 GGTTGACAAGGTGATTTGGAGATT 59.476 41.667 0.00 0.00 32.32 2.40
2458 2503 4.082125 GGTTGACAAGGTGATTTGGAGAT 58.918 43.478 0.00 0.00 32.32 2.75
2459 2504 3.138283 AGGTTGACAAGGTGATTTGGAGA 59.862 43.478 0.00 0.00 32.32 3.71
2460 2505 3.490348 AGGTTGACAAGGTGATTTGGAG 58.510 45.455 0.00 0.00 32.32 3.86
2461 2506 3.593442 AGGTTGACAAGGTGATTTGGA 57.407 42.857 0.00 0.00 32.32 3.53
2462 2507 5.301805 AGTTAAGGTTGACAAGGTGATTTGG 59.698 40.000 0.00 0.00 32.32 3.28
2463 2508 6.183360 ACAGTTAAGGTTGACAAGGTGATTTG 60.183 38.462 0.00 0.00 0.00 2.32
2464 2509 5.891551 ACAGTTAAGGTTGACAAGGTGATTT 59.108 36.000 0.00 0.00 0.00 2.17
2465 2510 5.445964 ACAGTTAAGGTTGACAAGGTGATT 58.554 37.500 0.00 0.00 0.00 2.57
2476 2521 4.565028 GGGAGGGAGTAACAGTTAAGGTTG 60.565 50.000 0.00 0.00 0.00 3.77
2479 2524 3.451890 AGGGAGGGAGTAACAGTTAAGG 58.548 50.000 0.00 0.00 0.00 2.69
2498 2543 0.535797 GTACTCCCTCCGTTCCAAGG 59.464 60.000 0.00 0.00 0.00 3.61
2499 2544 1.558233 AGTACTCCCTCCGTTCCAAG 58.442 55.000 0.00 0.00 0.00 3.61
2500 2545 1.897802 GAAGTACTCCCTCCGTTCCAA 59.102 52.381 0.00 0.00 0.00 3.53
2501 2546 1.076677 AGAAGTACTCCCTCCGTTCCA 59.923 52.381 0.00 0.00 0.00 3.53
2502 2547 1.849977 AGAAGTACTCCCTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
2503 2548 2.824341 TGAAGAAGTACTCCCTCCGTTC 59.176 50.000 0.00 0.00 0.00 3.95
2504 2549 2.885616 TGAAGAAGTACTCCCTCCGTT 58.114 47.619 0.00 0.00 0.00 4.44
2505 2550 2.599408 TGAAGAAGTACTCCCTCCGT 57.401 50.000 0.00 0.00 0.00 4.69
2506 2551 2.482142 GCATGAAGAAGTACTCCCTCCG 60.482 54.545 0.00 0.00 0.00 4.63
2507 2552 2.501723 TGCATGAAGAAGTACTCCCTCC 59.498 50.000 0.00 0.00 0.00 4.30
2508 2553 3.895232 TGCATGAAGAAGTACTCCCTC 57.105 47.619 0.00 0.00 0.00 4.30
2509 2554 3.135530 GGATGCATGAAGAAGTACTCCCT 59.864 47.826 2.46 0.00 0.00 4.20
2510 2555 3.135530 AGGATGCATGAAGAAGTACTCCC 59.864 47.826 2.46 0.00 0.00 4.30
2511 2556 4.414337 AGGATGCATGAAGAAGTACTCC 57.586 45.455 2.46 0.00 0.00 3.85
2512 2557 6.155475 ACTAGGATGCATGAAGAAGTACTC 57.845 41.667 2.46 0.00 0.00 2.59
2513 2558 6.382570 AGAACTAGGATGCATGAAGAAGTACT 59.617 38.462 2.46 0.00 0.00 2.73
2514 2559 6.578023 AGAACTAGGATGCATGAAGAAGTAC 58.422 40.000 2.46 0.00 0.00 2.73
2515 2560 6.381133 TGAGAACTAGGATGCATGAAGAAGTA 59.619 38.462 2.46 0.00 0.00 2.24
2516 2561 5.188555 TGAGAACTAGGATGCATGAAGAAGT 59.811 40.000 2.46 0.00 0.00 3.01
2517 2562 5.668471 TGAGAACTAGGATGCATGAAGAAG 58.332 41.667 2.46 0.00 0.00 2.85
2518 2563 5.682234 TGAGAACTAGGATGCATGAAGAA 57.318 39.130 2.46 0.00 0.00 2.52
2548 2597 2.275318 CGAAGCAAGATGAGGAGGAAC 58.725 52.381 0.00 0.00 0.00 3.62
2571 2620 0.901124 AGGCAGCAGTAGAAGGACAG 59.099 55.000 0.00 0.00 0.00 3.51
2627 2678 1.774110 TGAACAGGCAAACACCATGT 58.226 45.000 0.00 0.00 0.00 3.21
2640 2691 8.994429 GGATGTCATCCTAGTATATTGAACAG 57.006 38.462 22.64 0.00 46.19 3.16
2690 2741 5.106673 GCCTCAAGTTTATAGTGTGTCCAAC 60.107 44.000 0.00 0.00 0.00 3.77
2706 2757 1.338579 GCAACTAGAGCAGCCTCAAGT 60.339 52.381 0.00 0.00 40.68 3.16
2794 2845 7.485595 TCATGTGCATTTAGACAATGATTTTCG 59.514 33.333 0.00 0.00 0.00 3.46
2828 2879 5.983333 ACATCCCTCATAGTCTTTTCCAT 57.017 39.130 0.00 0.00 0.00 3.41
2890 2941 9.299963 CTTGCCAGATCGATTCTTAAGATATAG 57.700 37.037 5.89 4.16 29.93 1.31
2891 2942 8.807118 ACTTGCCAGATCGATTCTTAAGATATA 58.193 33.333 5.89 0.00 29.93 0.86
2892 2943 7.601886 CACTTGCCAGATCGATTCTTAAGATAT 59.398 37.037 5.89 3.13 29.93 1.63
2922 2973 4.530710 TTCCTGTGTACTCGCTAAATGT 57.469 40.909 0.00 0.00 0.00 2.71
2923 2974 7.534085 TTTATTCCTGTGTACTCGCTAAATG 57.466 36.000 0.00 0.00 0.00 2.32
2999 3050 2.759535 CCCACATGCACAATGATGGTAA 59.240 45.455 0.00 0.00 38.72 2.85
3018 3069 3.575965 ACAATGTTTTCGCAATCTCCC 57.424 42.857 0.00 0.00 0.00 4.30
3111 3167 3.430098 GGAGATGTGAAGGACTGCTACAG 60.430 52.174 0.00 0.00 37.52 2.74
3117 3173 1.905215 ACCAGGAGATGTGAAGGACTG 59.095 52.381 0.00 0.00 0.00 3.51
3119 3175 3.339141 GAAACCAGGAGATGTGAAGGAC 58.661 50.000 0.00 0.00 0.00 3.85
3121 3177 2.716217 GGAAACCAGGAGATGTGAAGG 58.284 52.381 0.00 0.00 0.00 3.46
3159 3224 7.390162 GCAATGGTTGATCTTTGGGAAAAATAA 59.610 33.333 0.00 0.00 0.00 1.40
3166 3231 2.178580 GGCAATGGTTGATCTTTGGGA 58.821 47.619 0.00 0.00 0.00 4.37
3181 3247 3.843027 TGAAAATGGGTGGTTATGGCAAT 59.157 39.130 0.00 0.00 0.00 3.56
3224 3290 7.519032 TTATAGTGTTGGTTGAAGGGAAAAG 57.481 36.000 0.00 0.00 0.00 2.27
3289 3355 1.646189 GCTAGAAGAAGACAAGGGCG 58.354 55.000 0.00 0.00 0.00 6.13
3291 3357 3.990959 AAGGCTAGAAGAAGACAAGGG 57.009 47.619 0.00 0.00 0.00 3.95
3295 3361 9.959721 ACAATATTTAAAGGCTAGAAGAAGACA 57.040 29.630 0.00 0.00 0.00 3.41
3341 3407 2.110011 AGGCATTGACCCAAGTTAGGTT 59.890 45.455 0.00 0.00 37.88 3.50
3388 3454 0.755686 GTGGTGTTGGGCCATTTTCA 59.244 50.000 7.26 1.10 38.40 2.69
3415 3483 1.269723 GTTCCAGGCACTAGTTTTGGC 59.730 52.381 10.76 5.04 36.02 4.52
3417 3485 2.554032 CCAGTTCCAGGCACTAGTTTTG 59.446 50.000 0.00 0.00 36.02 2.44
3418 3486 2.489073 CCCAGTTCCAGGCACTAGTTTT 60.489 50.000 0.00 0.00 36.02 2.43
3457 3525 2.798283 TGTTCCAAGAAAGTTCGCTACG 59.202 45.455 0.00 0.00 0.00 3.51
3459 3527 4.193090 TGTTGTTCCAAGAAAGTTCGCTA 58.807 39.130 0.00 0.00 0.00 4.26
3462 3530 5.468746 TCCTATGTTGTTCCAAGAAAGTTCG 59.531 40.000 0.00 0.00 0.00 3.95
3501 3571 2.335316 TGTAAACCCAAGCAGAACGT 57.665 45.000 0.00 0.00 0.00 3.99
3509 3579 4.038162 TCCGTTTTTCCATGTAAACCCAAG 59.962 41.667 8.74 0.00 32.05 3.61
3540 3610 9.010029 CACCTTTACATCTTACATTGTAGGTTT 57.990 33.333 5.92 0.00 34.21 3.27
3584 3654 5.391433 CCGTGTTTCGATAAATTATGAACGC 59.609 40.000 0.00 0.00 42.86 4.84
3585 3655 6.622183 GTCCGTGTTTCGATAAATTATGAACG 59.378 38.462 0.00 0.00 42.86 3.95
3607 3677 5.812286 TCTTGAACCCCTAAGTTATTGTCC 58.188 41.667 0.00 0.00 0.00 4.02
3608 3678 6.371825 CACTCTTGAACCCCTAAGTTATTGTC 59.628 42.308 0.00 0.00 0.00 3.18
3619 3689 4.741928 AAATTACCACTCTTGAACCCCT 57.258 40.909 0.00 0.00 0.00 4.79
3621 3691 9.016438 TGTATTAAAATTACCACTCTTGAACCC 57.984 33.333 0.00 0.00 0.00 4.11
3646 3716 5.687285 AGCGTTCACAAGCTTAAGAAAATTG 59.313 36.000 6.67 7.51 41.52 2.32
3785 3855 7.555195 ACATAAGATCAATGCTTCAATCTGACA 59.445 33.333 7.73 0.00 0.00 3.58
3836 3914 5.647658 CCACATTCATCTTGGCAAGTTACTA 59.352 40.000 25.39 7.57 0.00 1.82
3837 3915 4.460382 CCACATTCATCTTGGCAAGTTACT 59.540 41.667 25.39 7.68 0.00 2.24
3843 3921 5.015515 TGATTACCACATTCATCTTGGCAA 58.984 37.500 0.00 0.00 33.25 4.52
3887 3965 9.618890 TTAACATCTAGCTAGATTTGCTTTCAT 57.381 29.630 29.79 12.09 40.91 2.57
3949 4028 9.971744 CAAAAATGAAAGGAAACACAACTAAAG 57.028 29.630 0.00 0.00 0.00 1.85
3965 4044 6.644181 TGCTGCGATGTAATTCAAAAATGAAA 59.356 30.769 0.00 0.00 0.00 2.69
3971 4050 4.082300 ACCATGCTGCGATGTAATTCAAAA 60.082 37.500 9.91 0.00 0.00 2.44
3974 4053 2.642427 ACCATGCTGCGATGTAATTCA 58.358 42.857 9.91 0.00 0.00 2.57
3975 4054 3.698029 AACCATGCTGCGATGTAATTC 57.302 42.857 9.91 0.00 0.00 2.17
3981 4060 4.818534 ATAACTAAACCATGCTGCGATG 57.181 40.909 0.00 0.28 0.00 3.84
3987 4066 6.828273 TGCATCACTAATAACTAAACCATGCT 59.172 34.615 0.00 0.00 35.12 3.79
4006 4085 2.134354 TCCCCTTCCATATGTGCATCA 58.866 47.619 1.24 0.00 0.00 3.07
4022 4101 6.280855 ACATTGTAAGCTTAATTGTTCCCC 57.719 37.500 7.99 0.00 0.00 4.81
4052 4131 1.767088 ACGTCCTTATTCTTAGCCCCC 59.233 52.381 0.00 0.00 0.00 5.40
4053 4132 2.433239 TCACGTCCTTATTCTTAGCCCC 59.567 50.000 0.00 0.00 0.00 5.80
4054 4133 3.814005 TCACGTCCTTATTCTTAGCCC 57.186 47.619 0.00 0.00 0.00 5.19
4111 4197 3.997021 CACTACTGGAATCGCAGAGTTTT 59.003 43.478 5.89 0.00 43.63 2.43
4115 4201 3.724508 ATCACTACTGGAATCGCAGAG 57.275 47.619 5.89 2.82 43.63 3.35
4118 4204 2.035961 GGCTATCACTACTGGAATCGCA 59.964 50.000 0.00 0.00 0.00 5.10
4128 4214 3.106672 CGTCGTTCTTGGCTATCACTAC 58.893 50.000 0.00 0.00 0.00 2.73
4129 4215 2.098607 CCGTCGTTCTTGGCTATCACTA 59.901 50.000 0.00 0.00 0.00 2.74
4135 4221 0.245539 CCTTCCGTCGTTCTTGGCTA 59.754 55.000 0.00 0.00 0.00 3.93
4141 4227 4.883585 TGTGTATATACCTTCCGTCGTTCT 59.116 41.667 10.38 0.00 0.00 3.01
4142 4228 5.173774 TGTGTATATACCTTCCGTCGTTC 57.826 43.478 10.38 0.00 0.00 3.95
4143 4229 5.450965 CCTTGTGTATATACCTTCCGTCGTT 60.451 44.000 10.38 0.00 0.00 3.85
4144 4230 4.037208 CCTTGTGTATATACCTTCCGTCGT 59.963 45.833 10.38 0.00 0.00 4.34
4145 4231 4.543692 CCTTGTGTATATACCTTCCGTCG 58.456 47.826 10.38 0.00 0.00 5.12
4146 4232 4.343239 ACCCTTGTGTATATACCTTCCGTC 59.657 45.833 10.38 0.00 0.00 4.79
4148 4234 4.950205 ACCCTTGTGTATATACCTTCCG 57.050 45.455 10.38 0.00 0.00 4.30
4149 4235 8.215736 ACATAAACCCTTGTGTATATACCTTCC 58.784 37.037 10.38 0.00 35.34 3.46
4178 4265 1.019673 GTGCGAATGATCCATGCTGT 58.980 50.000 0.00 0.00 0.00 4.40
4181 4268 1.590932 AGAGTGCGAATGATCCATGC 58.409 50.000 0.00 0.00 0.00 4.06
4188 4275 3.004839 GTGGATAGCTAGAGTGCGAATGA 59.995 47.826 0.00 0.00 38.13 2.57
4193 4280 1.269309 GGTGTGGATAGCTAGAGTGCG 60.269 57.143 0.00 0.00 38.13 5.34
4194 4281 1.069358 GGGTGTGGATAGCTAGAGTGC 59.931 57.143 0.00 0.00 0.00 4.40
4200 4287 2.304092 CGTAGTGGGTGTGGATAGCTA 58.696 52.381 0.00 0.00 0.00 3.32
4202 4289 0.822164 ACGTAGTGGGTGTGGATAGC 59.178 55.000 0.00 0.00 42.51 2.97
4221 4308 4.170053 TGATGGAGTCAGAGGGGATAACTA 59.830 45.833 0.00 0.00 31.80 2.24
4223 4310 3.309296 TGATGGAGTCAGAGGGGATAAC 58.691 50.000 0.00 0.00 31.80 1.89
4228 4315 0.179936 GCTTGATGGAGTCAGAGGGG 59.820 60.000 0.00 0.00 38.29 4.79
4233 4320 3.405831 TGTTTCTGCTTGATGGAGTCAG 58.594 45.455 0.00 0.00 38.29 3.51
4235 4322 5.448360 GCTTATGTTTCTGCTTGATGGAGTC 60.448 44.000 0.00 0.00 35.48 3.36
4244 4331 1.200020 GCACGGCTTATGTTTCTGCTT 59.800 47.619 0.00 0.00 0.00 3.91
4249 4336 2.745281 TGTTAGGCACGGCTTATGTTTC 59.255 45.455 0.00 0.00 0.00 2.78
4256 4343 0.887933 CCATTTGTTAGGCACGGCTT 59.112 50.000 0.00 0.00 0.00 4.35
4259 4346 1.510844 GCCCATTTGTTAGGCACGG 59.489 57.895 0.00 0.00 46.34 4.94
4266 4353 5.337975 GCTTTTATTCCTGGCCCATTTGTTA 60.338 40.000 0.00 0.00 0.00 2.41
4291 4378 2.203800 TAGCGTGATAGAAGCAACGG 57.796 50.000 0.00 0.00 0.00 4.44
4292 4379 2.921121 TGTTAGCGTGATAGAAGCAACG 59.079 45.455 0.00 0.00 0.00 4.10
4300 4387 5.277058 GCTTTTCATCCTGTTAGCGTGATAG 60.277 44.000 0.00 0.00 0.00 2.08
4316 4403 1.880027 GGAACGACCTGTGCTTTTCAT 59.120 47.619 0.00 0.00 35.41 2.57
4317 4404 1.305201 GGAACGACCTGTGCTTTTCA 58.695 50.000 0.00 0.00 35.41 2.69
4332 4419 2.092375 AGTGGCTAATTAGGGCAGGAAC 60.092 50.000 14.28 2.76 39.83 3.62
4341 4428 7.924412 TGTATTTCGGTTAGAGTGGCTAATTAG 59.076 37.037 8.20 8.20 40.94 1.73
4342 4429 7.784037 TGTATTTCGGTTAGAGTGGCTAATTA 58.216 34.615 0.00 0.00 40.94 1.40
4352 4439 8.141909 TGGATAAGTGATGTATTTCGGTTAGAG 58.858 37.037 0.00 0.00 0.00 2.43
4355 4442 7.496591 GGTTGGATAAGTGATGTATTTCGGTTA 59.503 37.037 0.00 0.00 0.00 2.85
4356 4443 6.317893 GGTTGGATAAGTGATGTATTTCGGTT 59.682 38.462 0.00 0.00 0.00 4.44
4360 4448 7.639113 TTGGGTTGGATAAGTGATGTATTTC 57.361 36.000 0.00 0.00 0.00 2.17
4394 4482 5.428253 AGTACCGACACTAAATGCAATGAT 58.572 37.500 0.00 0.00 0.00 2.45
4395 4483 4.827692 AGTACCGACACTAAATGCAATGA 58.172 39.130 0.00 0.00 0.00 2.57
4398 4486 3.998341 GGAAGTACCGACACTAAATGCAA 59.002 43.478 0.00 0.00 0.00 4.08
4399 4487 3.592059 GGAAGTACCGACACTAAATGCA 58.408 45.455 0.00 0.00 0.00 3.96
4421 4509 4.436852 CCAAATATAGGAACGTGTGCACAC 60.437 45.833 35.04 35.04 43.15 3.82
4422 4510 3.687212 CCAAATATAGGAACGTGTGCACA 59.313 43.478 17.42 17.42 0.00 4.57
4423 4511 3.687698 ACCAAATATAGGAACGTGTGCAC 59.312 43.478 10.75 10.75 0.00 4.57
4424 4512 3.687212 CACCAAATATAGGAACGTGTGCA 59.313 43.478 0.00 0.00 0.00 4.57
4425 4513 3.486875 GCACCAAATATAGGAACGTGTGC 60.487 47.826 3.92 3.92 39.61 4.57
4429 4517 4.947388 ACATTGCACCAAATATAGGAACGT 59.053 37.500 1.37 0.00 0.00 3.99
4433 4521 8.938801 ATAATGACATTGCACCAAATATAGGA 57.061 30.769 11.05 0.00 0.00 2.94
4464 4552 1.203415 TCCTGCCATTCCCCCAAAAAT 60.203 47.619 0.00 0.00 0.00 1.82
4467 4555 1.313889 TATCCTGCCATTCCCCCAAA 58.686 50.000 0.00 0.00 0.00 3.28
4468 4556 1.313889 TTATCCTGCCATTCCCCCAA 58.686 50.000 0.00 0.00 0.00 4.12
4469 4557 1.313889 TTTATCCTGCCATTCCCCCA 58.686 50.000 0.00 0.00 0.00 4.96
4470 4558 2.702270 ATTTATCCTGCCATTCCCCC 57.298 50.000 0.00 0.00 0.00 5.40
4471 4559 3.849527 AGAATTTATCCTGCCATTCCCC 58.150 45.455 0.00 0.00 0.00 4.81
4472 4560 4.895297 TCAAGAATTTATCCTGCCATTCCC 59.105 41.667 0.00 0.00 0.00 3.97
4473 4561 5.360714 TGTCAAGAATTTATCCTGCCATTCC 59.639 40.000 0.00 0.00 0.00 3.01
4474 4562 6.455360 TGTCAAGAATTTATCCTGCCATTC 57.545 37.500 0.00 0.00 0.00 2.67
4475 4563 6.855763 TTGTCAAGAATTTATCCTGCCATT 57.144 33.333 0.00 0.00 0.00 3.16
4476 4564 6.855763 TTTGTCAAGAATTTATCCTGCCAT 57.144 33.333 0.00 0.00 0.00 4.40
4477 4565 6.041409 TGTTTTGTCAAGAATTTATCCTGCCA 59.959 34.615 0.00 0.00 0.00 4.92
4478 4566 6.454795 TGTTTTGTCAAGAATTTATCCTGCC 58.545 36.000 0.00 0.00 0.00 4.85
4479 4567 7.945033 TTGTTTTGTCAAGAATTTATCCTGC 57.055 32.000 0.00 0.00 0.00 4.85
4511 4599 9.956720 GCTCATGTGAAATAGCTACAATTTATT 57.043 29.630 0.00 0.00 32.18 1.40
4519 4756 5.303971 AGGATGCTCATGTGAAATAGCTAC 58.696 41.667 0.00 0.00 35.95 3.58
4526 4763 4.143543 TGTCAAAGGATGCTCATGTGAAA 58.856 39.130 0.00 0.00 0.00 2.69
4527 4764 3.753815 TGTCAAAGGATGCTCATGTGAA 58.246 40.909 0.00 0.00 0.00 3.18
4588 4829 3.254060 CACAGTATCTCCGAACTGGTTG 58.746 50.000 7.33 0.00 45.94 3.77
4605 4846 2.008752 TATGTCGTCACATGCCACAG 57.991 50.000 0.00 0.00 43.54 3.66
4612 4853 4.371786 CCAGCTTGTATATGTCGTCACAT 58.628 43.478 0.00 0.00 45.73 3.21
4614 4855 2.540101 GCCAGCTTGTATATGTCGTCAC 59.460 50.000 0.00 0.00 0.00 3.67
4627 4868 2.031012 TCTGACACCGCCAGCTTG 59.969 61.111 0.00 0.00 0.00 4.01
4666 4907 3.698040 AGGTTTGCAGCATTCCATCTTAG 59.302 43.478 15.80 0.00 0.00 2.18
4696 4938 2.513893 GACCGACAACTTCTACTACGC 58.486 52.381 0.00 0.00 0.00 4.42
4711 4953 2.167693 AGCCTCAAATGTAATCGACCGA 59.832 45.455 0.00 0.00 0.00 4.69
4731 4973 6.585322 AGGTTAAGTTCGACTCGACATAAAAG 59.415 38.462 0.00 0.00 34.89 2.27
4734 4976 5.413833 AGAGGTTAAGTTCGACTCGACATAA 59.586 40.000 0.00 0.00 34.89 1.90
4751 4993 6.062095 TGATATCATCACGACTCAGAGGTTA 58.938 40.000 0.00 0.00 33.59 2.85
4779 5021 4.065088 ACGATGCACACACATTTCTAAGT 58.935 39.130 0.00 0.00 0.00 2.24
4811 5053 7.725251 TCCTGAATTGAAATGTTAAAGCAGTT 58.275 30.769 0.00 0.00 0.00 3.16
4841 5083 2.755929 GGCAGAGTAGCCGAAACAG 58.244 57.895 0.00 0.00 46.12 3.16
4862 5104 6.402222 AGAGAAGTAGTGCTACCAAATCTTG 58.598 40.000 5.80 0.00 36.75 3.02
4922 5164 4.109766 TCCGAAGCATTGTAATAGTGACG 58.890 43.478 0.00 0.00 0.00 4.35
4923 5165 5.753438 TGATCCGAAGCATTGTAATAGTGAC 59.247 40.000 0.00 0.00 0.00 3.67
4928 5170 7.981789 GGATCTATGATCCGAAGCATTGTAATA 59.018 37.037 10.37 0.00 0.00 0.98
5035 5402 0.960364 GCCTTGGCAGGATTTCACGA 60.960 55.000 6.79 0.00 44.19 4.35
5058 5425 2.014335 ATTACCGCGGTTTCTGTACC 57.986 50.000 38.94 0.00 34.72 3.34
5070 5437 3.319972 TGTCACTACTCCCATATTACCGC 59.680 47.826 0.00 0.00 0.00 5.68
5080 5447 2.280552 TGGCGGTGTCACTACTCCC 61.281 63.158 2.35 0.00 36.14 4.30
5087 5454 1.301423 TGTAAAAGTGGCGGTGTCAC 58.699 50.000 0.00 0.00 38.58 3.67
5088 5455 2.039818 TTGTAAAAGTGGCGGTGTCA 57.960 45.000 0.00 0.00 0.00 3.58
5095 5462 4.570369 AGTTTGTGCATTTGTAAAAGTGGC 59.430 37.500 0.00 0.00 0.00 5.01
5105 5472 6.421501 TGAAGCTAATCAAGTTTGTGCATTTG 59.578 34.615 0.00 0.00 0.00 2.32
5108 5475 5.710513 TGAAGCTAATCAAGTTTGTGCAT 57.289 34.783 0.00 0.00 0.00 3.96
5114 5481 8.169977 TGAAACTCATGAAGCTAATCAAGTTT 57.830 30.769 14.07 14.07 40.46 2.66
5115 5482 7.663081 TCTGAAACTCATGAAGCTAATCAAGTT 59.337 33.333 0.00 0.00 33.80 2.66
5139 5506 3.309296 TGGGTGACTGAAGAGAGTTTCT 58.691 45.455 0.00 0.00 37.93 2.52
5151 5518 2.584835 TCCTTTTGGATGGGTGACTG 57.415 50.000 0.00 0.00 45.19 3.51
5171 5538 4.326826 ACTTTCAACATCACGACATCCAT 58.673 39.130 0.00 0.00 0.00 3.41
5172 5539 3.738982 ACTTTCAACATCACGACATCCA 58.261 40.909 0.00 0.00 0.00 3.41
5180 5547 4.494484 GGCCCAAATACTTTCAACATCAC 58.506 43.478 0.00 0.00 0.00 3.06
5195 5562 2.234908 CCAACATATTTTCCGGCCCAAA 59.765 45.455 0.00 0.00 0.00 3.28
5198 5565 1.770294 TCCAACATATTTTCCGGCCC 58.230 50.000 0.00 0.00 0.00 5.80
5206 5573 5.835280 CCTCTAGGGCAATTCCAACATATTT 59.165 40.000 0.00 0.00 36.21 1.40
5209 5576 4.437682 CCTCTAGGGCAATTCCAACATA 57.562 45.455 0.00 0.00 36.21 2.29
5298 5667 9.031360 TGATTTTCGTATGTTTGAGAGCTATAC 57.969 33.333 0.00 0.00 0.00 1.47
5304 5674 8.076178 ACCTTTTGATTTTCGTATGTTTGAGAG 58.924 33.333 0.00 0.00 0.00 3.20
5309 5679 8.410141 TCTGAACCTTTTGATTTTCGTATGTTT 58.590 29.630 0.00 0.00 0.00 2.83
5313 5683 7.979444 TCTCTGAACCTTTTGATTTTCGTAT 57.021 32.000 0.00 0.00 0.00 3.06
5316 5686 7.985634 TTTTCTCTGAACCTTTTGATTTTCG 57.014 32.000 0.00 0.00 0.00 3.46
5338 5708 7.607607 TCAAGTCTACATGTGCATATGAGTTTT 59.392 33.333 27.77 15.14 0.00 2.43
5381 5751 1.651987 GGCAGCGCACAGACTAATAA 58.348 50.000 11.47 0.00 0.00 1.40
5383 5753 1.450312 GGGCAGCGCACAGACTAAT 60.450 57.895 11.47 0.00 0.00 1.73
5418 5788 3.539604 CAAGTAAGAGCTCCCTTGGATG 58.460 50.000 21.84 7.50 32.57 3.51
5424 5794 1.901085 CGGCAAGTAAGAGCTCCCT 59.099 57.895 10.93 0.73 0.00 4.20
5425 5795 1.815840 GCGGCAAGTAAGAGCTCCC 60.816 63.158 10.93 1.06 0.00 4.30
5451 5821 1.202830 TGCGTTGGGGTCACTATTTGT 60.203 47.619 0.00 0.00 0.00 2.83
5466 5837 3.727146 GGAAGTTGTCCGTGCGTT 58.273 55.556 0.00 0.00 36.40 4.84
5490 5861 1.134401 CAGATTGCTACATGGGTCGGT 60.134 52.381 0.00 0.00 0.00 4.69
5503 5874 2.815211 TCGCTCGTGGCAGATTGC 60.815 61.111 0.00 0.00 44.08 3.56
5510 5881 1.852895 CTACATTAAGTCGCTCGTGGC 59.147 52.381 0.00 0.00 37.64 5.01
5527 5898 4.641094 ACTGCTACAGTATGACACTCCTAC 59.359 45.833 0.00 0.00 43.46 3.18
5530 5901 4.457834 AACTGCTACAGTATGACACTCC 57.542 45.455 0.00 0.00 44.62 3.85
5531 5902 5.715070 AGAAACTGCTACAGTATGACACTC 58.285 41.667 0.00 0.00 44.62 3.51
5532 5903 5.730296 AGAAACTGCTACAGTATGACACT 57.270 39.130 0.00 0.00 44.62 3.55
5537 5908 8.818057 GGTACAATAAGAAACTGCTACAGTATG 58.182 37.037 0.00 0.00 44.62 2.39
5538 5909 8.537016 TGGTACAATAAGAAACTGCTACAGTAT 58.463 33.333 0.00 0.00 38.82 2.12
5564 5935 2.158608 GGAACTATTATGGTGCCAGGCT 60.159 50.000 14.15 0.00 32.72 4.58
5566 5937 3.864789 AGGAACTATTATGGTGCCAGG 57.135 47.619 8.49 0.00 36.02 4.45
5567 5938 6.530019 AAAAAGGAACTATTATGGTGCCAG 57.470 37.500 8.49 0.00 38.49 4.85
5594 5965 9.913310 TTTTCCCTAAAAATGAAGGACAAAATT 57.087 25.926 0.00 0.00 34.58 1.82
5595 5966 9.913310 TTTTTCCCTAAAAATGAAGGACAAAAT 57.087 25.926 0.00 0.00 39.16 1.82
5631 6003 7.458038 TCGGCATTTTTAAAAAGTTCACTTC 57.542 32.000 17.72 0.00 34.61 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.