Multiple sequence alignment - TraesCS6A01G113900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G113900 chr6A 100.000 8291 0 0 1 8291 84039708 84047998 0.000000e+00 15311.0
1 TraesCS6A01G113900 chr6A 98.126 747 13 1 210 956 596180799 596181544 0.000000e+00 1301.0
2 TraesCS6A01G113900 chr6A 93.342 751 19 5 210 960 270740472 270739753 0.000000e+00 1081.0
3 TraesCS6A01G113900 chr6A 99.512 205 1 0 6782 6986 84041560 84041764 2.830000e-99 374.0
4 TraesCS6A01G113900 chr6A 99.512 205 1 0 1853 2057 84046489 84046693 2.830000e-99 374.0
5 TraesCS6A01G113900 chr6A 98.182 110 2 0 7371 7480 594523791 594523900 8.490000e-45 193.0
6 TraesCS6A01G113900 chr6A 79.121 182 33 5 997 1174 85080235 85080055 4.060000e-23 121.0
7 TraesCS6A01G113900 chr6A 95.833 48 1 1 7922 7968 67514476 67514523 8.920000e-10 76.8
8 TraesCS6A01G113900 chr3A 96.738 2974 80 2 2828 5801 719811492 719808536 0.000000e+00 4939.0
9 TraesCS6A01G113900 chr3A 95.485 1041 27 7 1853 2875 719812529 719811491 0.000000e+00 1644.0
10 TraesCS6A01G113900 chr3A 81.955 1790 295 14 2034 3798 166155192 166153406 0.000000e+00 1491.0
11 TraesCS6A01G113900 chr3A 82.738 1651 255 23 4103 5737 166153078 166151442 0.000000e+00 1443.0
12 TraesCS6A01G113900 chr3A 95.298 638 28 2 6351 6987 719808515 719807879 0.000000e+00 1011.0
13 TraesCS6A01G113900 chr3A 79.882 850 154 13 5966 6806 166151228 166150387 2.560000e-169 606.0
14 TraesCS6A01G113900 chr3A 97.170 212 4 2 1853 2063 719808084 719807874 2.850000e-94 357.0
15 TraesCS6A01G113900 chr3A 96.117 206 6 2 6782 6986 719812529 719812325 1.330000e-87 335.0
16 TraesCS6A01G113900 chr6B 94.378 2348 128 3 4640 6986 509510217 509512561 0.000000e+00 3602.0
17 TraesCS6A01G113900 chr6B 95.551 2225 95 3 2456 4677 509507992 509510215 0.000000e+00 3557.0
18 TraesCS6A01G113900 chr6B 89.388 801 52 4 994 1787 141630616 141631390 0.000000e+00 977.0
19 TraesCS6A01G113900 chr6B 94.291 543 29 2 1852 2394 509507331 509507871 0.000000e+00 830.0
20 TraesCS6A01G113900 chr6B 88.817 465 28 10 7479 7925 141631872 141632330 4.370000e-152 549.0
21 TraesCS6A01G113900 chr6B 90.476 399 19 6 6986 7375 141631486 141631874 7.420000e-140 508.0
22 TraesCS6A01G113900 chr6B 92.638 326 22 2 7967 8291 141632326 141632650 1.260000e-127 468.0
23 TraesCS6A01G113900 chr6B 93.689 206 13 0 1853 2058 509512357 509512562 8.080000e-80 309.0
24 TraesCS6A01G113900 chr6B 88.971 136 9 4 30 159 141630448 141630583 6.660000e-36 163.0
25 TraesCS6A01G113900 chr6B 77.473 182 34 5 997 1173 142510546 142510367 1.470000e-17 102.0
26 TraesCS6A01G113900 chr6B 96.429 56 2 0 1784 1839 141631417 141631472 8.860000e-15 93.5
27 TraesCS6A01G113900 chr3D 90.388 2601 241 8 4210 6805 435326232 435323636 0.000000e+00 3410.0
28 TraesCS6A01G113900 chr3D 81.345 1903 294 39 1849 3711 435328648 435326767 0.000000e+00 1491.0
29 TraesCS6A01G113900 chr3D 87.449 486 37 16 268 751 15413671 15413208 9.470000e-149 538.0
30 TraesCS6A01G113900 chr7D 85.417 2784 315 39 1853 4578 627515327 627518077 0.000000e+00 2808.0
31 TraesCS6A01G113900 chr7D 86.065 1672 209 13 4106 5769 186836060 186834405 0.000000e+00 1775.0
32 TraesCS6A01G113900 chr7D 92.318 768 39 6 210 960 575754144 575753380 0.000000e+00 1074.0
33 TraesCS6A01G113900 chr7D 92.321 586 33 6 208 792 215092741 215092167 0.000000e+00 822.0
34 TraesCS6A01G113900 chr7D 87.379 206 20 3 6782 6986 627515327 627515527 1.800000e-56 231.0
35 TraesCS6A01G113900 chr7A 90.491 1914 173 4 4832 6745 16757111 16755207 0.000000e+00 2518.0
36 TraesCS6A01G113900 chr7A 80.979 1819 294 32 1868 3662 579068308 579070098 0.000000e+00 1395.0
37 TraesCS6A01G113900 chr5B 86.910 1673 198 13 4108 5771 529619879 529621539 0.000000e+00 1857.0
38 TraesCS6A01G113900 chr5B 82.894 1859 271 26 1866 3692 529617623 529619466 0.000000e+00 1628.0
39 TraesCS6A01G113900 chr5B 80.132 1062 196 11 5883 6938 529621651 529622703 0.000000e+00 778.0
40 TraesCS6A01G113900 chr5B 90.598 117 11 0 842 958 10265972 10266088 1.110000e-33 156.0
41 TraesCS6A01G113900 chr1B 86.899 1664 198 12 4108 5762 121274813 121276465 0.000000e+00 1847.0
42 TraesCS6A01G113900 chr1B 79.266 1008 199 10 5899 6900 121276551 121277554 0.000000e+00 695.0
43 TraesCS6A01G113900 chr1B 80.532 940 134 31 1868 2785 514358176 514357264 0.000000e+00 676.0
44 TraesCS6A01G113900 chr1B 86.957 161 19 2 8133 8291 674090200 674090040 6.610000e-41 180.0
45 TraesCS6A01G113900 chr1B 83.582 201 22 9 7704 7895 674090671 674090473 2.380000e-40 178.0
46 TraesCS6A01G113900 chr1B 97.872 47 1 0 1853 1899 647538052 647538098 1.920000e-11 82.4
47 TraesCS6A01G113900 chr1A 82.402 1790 286 14 2034 3798 32275160 32276945 0.000000e+00 1533.0
48 TraesCS6A01G113900 chr1A 83.782 1560 247 6 4205 5761 32277376 32278932 0.000000e+00 1474.0
49 TraesCS6A01G113900 chr1A 92.318 755 49 7 210 962 550758820 550759567 0.000000e+00 1064.0
50 TraesCS6A01G113900 chr1A 91.212 751 44 10 210 960 580931411 580930683 0.000000e+00 1002.0
51 TraesCS6A01G113900 chr1A 80.071 848 156 10 5966 6806 32279122 32279963 1.180000e-172 617.0
52 TraesCS6A01G113900 chr1A 93.750 48 2 1 7922 7968 574935315 574935362 4.150000e-08 71.3
53 TraesCS6A01G113900 chr1A 97.561 41 1 0 7928 7968 589511114 589511154 4.150000e-08 71.3
54 TraesCS6A01G113900 chrUn 90.859 1094 100 0 5240 6333 315179896 315178803 0.000000e+00 1467.0
55 TraesCS6A01G113900 chrUn 90.859 1094 100 0 5240 6333 315183554 315182461 0.000000e+00 1467.0
56 TraesCS6A01G113900 chrUn 90.727 1100 102 0 5234 6333 423146944 423148043 0.000000e+00 1467.0
57 TraesCS6A01G113900 chrUn 89.938 646 57 6 6343 6987 428163828 428164466 0.000000e+00 826.0
58 TraesCS6A01G113900 chr5A 81.394 1822 291 30 1868 3662 16944336 16942536 0.000000e+00 1443.0
59 TraesCS6A01G113900 chr5A 97.736 751 16 1 210 960 548730237 548729488 0.000000e+00 1291.0
60 TraesCS6A01G113900 chr5A 73.845 952 205 26 6005 6930 590112854 590111921 1.030000e-88 339.0
61 TraesCS6A01G113900 chr5A 99.091 110 1 0 7371 7480 70255928 70255819 1.830000e-46 198.0
62 TraesCS6A01G113900 chr5A 98.165 109 2 0 7372 7480 622371612 622371720 3.050000e-44 191.0
63 TraesCS6A01G113900 chr4A 81.397 1790 305 14 2034 3798 66515341 66513555 0.000000e+00 1435.0
64 TraesCS6A01G113900 chr4A 80.738 1734 284 34 1959 3661 620973652 620971938 0.000000e+00 1306.0
65 TraesCS6A01G113900 chr4A 99.091 110 1 0 7371 7480 638172431 638172322 1.830000e-46 198.0
66 TraesCS6A01G113900 chr4A 98.165 109 2 0 7373 7481 60677552 60677444 3.050000e-44 191.0
67 TraesCS6A01G113900 chr4A 95.918 49 1 1 7922 7969 200089212 200089164 2.480000e-10 78.7
68 TraesCS6A01G113900 chr4A 97.619 42 1 0 7927 7968 200089208 200089249 1.150000e-08 73.1
69 TraesCS6A01G113900 chr1D 82.238 1644 261 18 2033 3655 391722380 391720747 0.000000e+00 1389.0
70 TraesCS6A01G113900 chr1D 86.703 549 44 18 210 751 460603719 460603193 4.310000e-162 582.0
71 TraesCS6A01G113900 chr4D 81.780 1685 276 19 2004 3662 13046636 13048315 0.000000e+00 1382.0
72 TraesCS6A01G113900 chr4D 95.833 48 1 1 7922 7968 253767495 253767542 8.920000e-10 76.8
73 TraesCS6A01G113900 chr2B 81.972 1653 268 17 2034 3662 752387039 752388685 0.000000e+00 1375.0
74 TraesCS6A01G113900 chr3B 84.862 1156 172 3 2538 3692 788790433 788789280 0.000000e+00 1162.0
75 TraesCS6A01G113900 chr3B 98.148 108 2 0 7373 7480 494075585 494075692 1.100000e-43 189.0
76 TraesCS6A01G113900 chr3B 85.714 105 11 3 209 311 15207573 15207675 3.160000e-19 108.0
77 TraesCS6A01G113900 chr5D 82.560 992 163 8 5856 6840 541366040 541367028 0.000000e+00 865.0
78 TraesCS6A01G113900 chr2A 99.074 108 1 0 7373 7480 361945817 361945924 2.360000e-45 195.0
79 TraesCS6A01G113900 chr2A 98.131 107 2 0 7375 7481 632925272 632925166 3.950000e-43 187.0
80 TraesCS6A01G113900 chr4B 96.429 112 3 1 7369 7480 13406445 13406335 5.110000e-42 183.0
81 TraesCS6A01G113900 chr4B 97.561 41 1 0 7928 7968 86097750 86097710 4.150000e-08 71.3
82 TraesCS6A01G113900 chr4B 93.750 48 2 1 7922 7968 100325097 100325050 4.150000e-08 71.3
83 TraesCS6A01G113900 chr6D 94.231 52 1 2 7922 7971 130179195 130179246 2.480000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G113900 chr6A 84039708 84047998 8290 False 15311.00 15311 100.000000 1 8291 1 chr6A.!!$F2 8290
1 TraesCS6A01G113900 chr6A 596180799 596181544 745 False 1301.00 1301 98.126000 210 956 1 chr6A.!!$F6 746
2 TraesCS6A01G113900 chr6A 270739753 270740472 719 True 1081.00 1081 93.342000 210 960 1 chr6A.!!$R2 750
3 TraesCS6A01G113900 chr3A 719807874 719812529 4655 True 1657.20 4939 96.161600 1853 6987 5 chr3A.!!$R2 5134
4 TraesCS6A01G113900 chr3A 166150387 166155192 4805 True 1180.00 1491 81.525000 2034 6806 3 chr3A.!!$R1 4772
5 TraesCS6A01G113900 chr6B 509507331 509512562 5231 False 2074.50 3602 94.477250 1852 6986 4 chr6B.!!$F2 5134
6 TraesCS6A01G113900 chr6B 141630448 141632650 2202 False 459.75 977 91.119833 30 8291 6 chr6B.!!$F1 8261
7 TraesCS6A01G113900 chr3D 435323636 435328648 5012 True 2450.50 3410 85.866500 1849 6805 2 chr3D.!!$R2 4956
8 TraesCS6A01G113900 chr7D 186834405 186836060 1655 True 1775.00 1775 86.065000 4106 5769 1 chr7D.!!$R1 1663
9 TraesCS6A01G113900 chr7D 627515327 627518077 2750 False 1519.50 2808 86.398000 1853 6986 2 chr7D.!!$F1 5133
10 TraesCS6A01G113900 chr7D 575753380 575754144 764 True 1074.00 1074 92.318000 210 960 1 chr7D.!!$R3 750
11 TraesCS6A01G113900 chr7D 215092167 215092741 574 True 822.00 822 92.321000 208 792 1 chr7D.!!$R2 584
12 TraesCS6A01G113900 chr7A 16755207 16757111 1904 True 2518.00 2518 90.491000 4832 6745 1 chr7A.!!$R1 1913
13 TraesCS6A01G113900 chr7A 579068308 579070098 1790 False 1395.00 1395 80.979000 1868 3662 1 chr7A.!!$F1 1794
14 TraesCS6A01G113900 chr5B 529617623 529622703 5080 False 1421.00 1857 83.312000 1866 6938 3 chr5B.!!$F2 5072
15 TraesCS6A01G113900 chr1B 121274813 121277554 2741 False 1271.00 1847 83.082500 4108 6900 2 chr1B.!!$F2 2792
16 TraesCS6A01G113900 chr1B 514357264 514358176 912 True 676.00 676 80.532000 1868 2785 1 chr1B.!!$R1 917
17 TraesCS6A01G113900 chr1A 32275160 32279963 4803 False 1208.00 1533 82.085000 2034 6806 3 chr1A.!!$F4 4772
18 TraesCS6A01G113900 chr1A 550758820 550759567 747 False 1064.00 1064 92.318000 210 962 1 chr1A.!!$F1 752
19 TraesCS6A01G113900 chr1A 580930683 580931411 728 True 1002.00 1002 91.212000 210 960 1 chr1A.!!$R1 750
20 TraesCS6A01G113900 chrUn 315178803 315183554 4751 True 1467.00 1467 90.859000 5240 6333 2 chrUn.!!$R1 1093
21 TraesCS6A01G113900 chrUn 423146944 423148043 1099 False 1467.00 1467 90.727000 5234 6333 1 chrUn.!!$F1 1099
22 TraesCS6A01G113900 chrUn 428163828 428164466 638 False 826.00 826 89.938000 6343 6987 1 chrUn.!!$F2 644
23 TraesCS6A01G113900 chr5A 16942536 16944336 1800 True 1443.00 1443 81.394000 1868 3662 1 chr5A.!!$R1 1794
24 TraesCS6A01G113900 chr5A 548729488 548730237 749 True 1291.00 1291 97.736000 210 960 1 chr5A.!!$R3 750
25 TraesCS6A01G113900 chr5A 590111921 590112854 933 True 339.00 339 73.845000 6005 6930 1 chr5A.!!$R4 925
26 TraesCS6A01G113900 chr4A 66513555 66515341 1786 True 1435.00 1435 81.397000 2034 3798 1 chr4A.!!$R2 1764
27 TraesCS6A01G113900 chr4A 620971938 620973652 1714 True 1306.00 1306 80.738000 1959 3661 1 chr4A.!!$R4 1702
28 TraesCS6A01G113900 chr1D 391720747 391722380 1633 True 1389.00 1389 82.238000 2033 3655 1 chr1D.!!$R1 1622
29 TraesCS6A01G113900 chr1D 460603193 460603719 526 True 582.00 582 86.703000 210 751 1 chr1D.!!$R2 541
30 TraesCS6A01G113900 chr4D 13046636 13048315 1679 False 1382.00 1382 81.780000 2004 3662 1 chr4D.!!$F1 1658
31 TraesCS6A01G113900 chr2B 752387039 752388685 1646 False 1375.00 1375 81.972000 2034 3662 1 chr2B.!!$F1 1628
32 TraesCS6A01G113900 chr3B 788789280 788790433 1153 True 1162.00 1162 84.862000 2538 3692 1 chr3B.!!$R1 1154
33 TraesCS6A01G113900 chr5D 541366040 541367028 988 False 865.00 865 82.560000 5856 6840 1 chr5D.!!$F1 984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1043 0.250727 TCCAGGAGAGGTTTTTGCCG 60.251 55.000 0.00 0.0 0.00 5.69 F
1545 1595 0.034337 ACAGGTACGTCCATGCGTTT 59.966 50.000 3.70 0.0 43.04 3.60 F
1559 1609 0.042448 GCGTTTATTCGTGATCCCGC 60.042 55.000 0.00 0.0 0.00 6.13 F
2472 2663 0.106519 AGGAACACAGCAAAGCCACT 60.107 50.000 0.00 0.0 0.00 4.00 F
2753 2947 2.044492 TCCTCTGGTCCCAGTACTTCAT 59.956 50.000 12.88 0.0 43.96 2.57 F
4505 4882 2.158871 GGGCGTAGATTGGGATAACACA 60.159 50.000 0.00 0.0 0.00 3.72 F
5615 6034 1.206132 CAACATACCAGACCACGCCTA 59.794 52.381 0.00 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 1955 0.673985 TGGAGATACGCTTCCCATCG 59.326 55.000 0.00 0.0 0.00 3.84 R
2452 2643 1.142870 AGTGGCTTTGCTGTGTTCCTA 59.857 47.619 0.00 0.0 0.00 2.94 R
3237 3477 1.673920 ACGCGTTTCTTCATGGTGTTT 59.326 42.857 5.58 0.0 0.00 2.83 R
3714 3955 0.321671 GGTAACAGCAGCTCCTCACA 59.678 55.000 0.00 0.0 0.00 3.58 R
4725 5142 1.478916 CATGCCCACATGCTCATCAAA 59.521 47.619 0.00 0.0 46.75 2.69 R
5870 6325 0.251916 CCCCAGTATGCTCGTCCAAA 59.748 55.000 0.00 0.0 31.97 3.28 R
7368 7856 0.108756 GTGAACGGAGGGAGTAGCAC 60.109 60.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.004292 GTAAAGACGCGCACACACTTT 60.004 47.619 5.73 12.82 35.47 2.66
98 102 2.282603 TGCAAAACCCCCGGTAGC 60.283 61.111 0.00 0.00 33.12 3.58
102 106 0.392595 CAAAACCCCCGGTAGCTCTC 60.393 60.000 0.00 0.00 33.12 3.20
139 143 4.939052 CATCGTCCCTAGATGGTTACTT 57.061 45.455 0.00 0.00 41.16 2.24
142 146 4.346730 TCGTCCCTAGATGGTTACTTCAA 58.653 43.478 0.00 0.00 0.00 2.69
143 147 4.960469 TCGTCCCTAGATGGTTACTTCAAT 59.040 41.667 0.00 0.00 0.00 2.57
144 148 6.131264 TCGTCCCTAGATGGTTACTTCAATA 58.869 40.000 0.00 0.00 0.00 1.90
146 150 6.264744 CGTCCCTAGATGGTTACTTCAATAGA 59.735 42.308 0.00 0.00 0.00 1.98
149 153 9.225682 TCCCTAGATGGTTACTTCAATAGAAAT 57.774 33.333 0.00 0.00 32.35 2.17
150 154 9.495572 CCCTAGATGGTTACTTCAATAGAAATC 57.504 37.037 0.00 0.00 32.35 2.17
151 155 9.197694 CCTAGATGGTTACTTCAATAGAAATCG 57.802 37.037 0.00 0.00 32.35 3.34
152 156 9.751542 CTAGATGGTTACTTCAATAGAAATCGT 57.248 33.333 0.00 0.00 32.35 3.73
153 157 8.649973 AGATGGTTACTTCAATAGAAATCGTC 57.350 34.615 0.00 0.00 32.35 4.20
154 158 6.880822 TGGTTACTTCAATAGAAATCGTCG 57.119 37.500 0.00 0.00 32.35 5.12
155 159 5.808540 TGGTTACTTCAATAGAAATCGTCGG 59.191 40.000 0.00 0.00 32.35 4.79
156 160 5.276726 GGTTACTTCAATAGAAATCGTCGGC 60.277 44.000 0.00 0.00 32.35 5.54
157 161 2.858344 ACTTCAATAGAAATCGTCGGCG 59.142 45.455 1.15 1.15 34.58 6.46
166 170 3.908189 TCGTCGGCGAATACCTCA 58.092 55.556 10.97 0.00 44.92 3.86
167 171 2.182496 TCGTCGGCGAATACCTCAA 58.818 52.632 10.97 0.00 44.92 3.02
170 174 1.727880 CGTCGGCGAATACCTCAAAAA 59.272 47.619 12.92 0.00 41.33 1.94
206 210 2.478539 GGCGACCAAATTTCTGATCTGC 60.479 50.000 0.00 0.00 0.00 4.26
294 302 2.158871 CCGGCTGCAGGTAATTAAGGTA 60.159 50.000 17.12 0.00 0.00 3.08
318 326 9.722056 GTATTAAACAGAGCATTAATTGGAGTG 57.278 33.333 0.00 0.00 34.49 3.51
520 546 2.295909 TGCTTCACGATTTCCCAAAAGG 59.704 45.455 0.00 0.00 0.00 3.11
764 798 0.460311 AGTTCTCGGCACCCTATTCG 59.540 55.000 0.00 0.00 0.00 3.34
963 1013 0.851469 TCTAGGTACGGCCCTGATCT 59.149 55.000 0.00 0.00 38.26 2.75
965 1015 1.113517 TAGGTACGGCCCTGATCTGC 61.114 60.000 0.00 0.00 38.26 4.26
982 1032 2.130426 GCAGCGAGGATCCAGGAGA 61.130 63.158 15.82 0.00 0.00 3.71
983 1033 2.040330 CAGCGAGGATCCAGGAGAG 58.960 63.158 15.82 0.00 0.00 3.20
986 1036 1.045911 GCGAGGATCCAGGAGAGGTT 61.046 60.000 15.82 0.00 0.00 3.50
989 1039 2.237392 CGAGGATCCAGGAGAGGTTTTT 59.763 50.000 15.82 0.00 0.00 1.94
990 1040 3.615155 GAGGATCCAGGAGAGGTTTTTG 58.385 50.000 15.82 0.00 0.00 2.44
991 1041 2.095461 GGATCCAGGAGAGGTTTTTGC 58.905 52.381 6.95 0.00 0.00 3.68
993 1043 0.250727 TCCAGGAGAGGTTTTTGCCG 60.251 55.000 0.00 0.00 0.00 5.69
994 1044 1.244019 CCAGGAGAGGTTTTTGCCGG 61.244 60.000 0.00 0.00 0.00 6.13
995 1045 0.250727 CAGGAGAGGTTTTTGCCGGA 60.251 55.000 5.05 0.00 0.00 5.14
1041 1091 2.668280 GGCGGTCGAGAACTTGTGC 61.668 63.158 0.00 0.00 0.00 4.57
1056 1106 2.989253 TGCGCTTCTCCCGTCTCA 60.989 61.111 9.73 0.00 0.00 3.27
1063 1113 2.416244 TTCTCCCGTCTCACACACGC 62.416 60.000 0.00 0.00 35.87 5.34
1066 1116 2.430921 CCGTCTCACACACGCTCC 60.431 66.667 0.00 0.00 35.87 4.70
1164 1214 3.032609 GCGATGACGATGGAGGCG 61.033 66.667 0.00 0.00 42.66 5.52
1168 1218 4.147449 TGACGATGGAGGCGGCAG 62.147 66.667 13.08 0.00 42.70 4.85
1172 1222 4.925861 GATGGAGGCGGCAGAGGC 62.926 72.222 13.08 0.00 40.13 4.70
1187 1237 0.672342 GAGGCGAATACGAGGGCTAA 59.328 55.000 0.00 0.00 42.66 3.09
1255 1305 2.038659 CCTCCATGACCTTCTCCTCTC 58.961 57.143 0.00 0.00 0.00 3.20
1344 1394 3.202001 CACCGCGCCCATTTCGAT 61.202 61.111 0.00 0.00 0.00 3.59
1349 1399 1.062525 GCGCCCATTTCGATGACAC 59.937 57.895 0.00 0.00 0.00 3.67
1352 1402 1.198867 CGCCCATTTCGATGACACAAA 59.801 47.619 0.00 0.00 0.00 2.83
1355 1405 4.438065 CGCCCATTTCGATGACACAAAATA 60.438 41.667 0.00 0.00 0.00 1.40
1358 1408 7.199766 GCCCATTTCGATGACACAAAATATTA 58.800 34.615 0.00 0.00 0.00 0.98
1363 1413 4.812091 TCGATGACACAAAATATTACCGGG 59.188 41.667 6.32 0.00 0.00 5.73
1402 1452 2.768313 GTACTCTACGACGATGCGC 58.232 57.895 0.00 0.00 33.86 6.09
1529 1579 3.550656 GCCGAACGACAAGGACAG 58.449 61.111 0.00 0.00 0.00 3.51
1530 1580 2.027625 GCCGAACGACAAGGACAGG 61.028 63.158 0.00 0.00 0.00 4.00
1531 1581 1.366366 CCGAACGACAAGGACAGGT 59.634 57.895 0.00 0.00 0.00 4.00
1545 1595 0.034337 ACAGGTACGTCCATGCGTTT 59.966 50.000 3.70 0.00 43.04 3.60
1546 1596 1.273048 ACAGGTACGTCCATGCGTTTA 59.727 47.619 3.70 0.00 43.04 2.01
1547 1597 2.093869 ACAGGTACGTCCATGCGTTTAT 60.094 45.455 3.70 0.00 43.04 1.40
1549 1599 3.000925 CAGGTACGTCCATGCGTTTATTC 59.999 47.826 3.70 0.00 43.04 1.75
1550 1600 2.034339 GGTACGTCCATGCGTTTATTCG 60.034 50.000 3.70 0.00 43.04 3.34
1551 1601 1.717194 ACGTCCATGCGTTTATTCGT 58.283 45.000 0.00 0.00 43.04 3.85
1552 1602 1.392168 ACGTCCATGCGTTTATTCGTG 59.608 47.619 0.00 0.00 43.04 4.35
1555 1605 3.601586 CGTCCATGCGTTTATTCGTGATC 60.602 47.826 0.00 0.00 0.00 2.92
1556 1606 2.869801 TCCATGCGTTTATTCGTGATCC 59.130 45.455 0.00 0.00 0.00 3.36
1557 1607 2.032030 CCATGCGTTTATTCGTGATCCC 60.032 50.000 0.00 0.00 0.00 3.85
1558 1608 1.282817 TGCGTTTATTCGTGATCCCG 58.717 50.000 0.00 0.00 0.00 5.14
1559 1609 0.042448 GCGTTTATTCGTGATCCCGC 60.042 55.000 0.00 0.00 0.00 6.13
1560 1610 0.580104 CGTTTATTCGTGATCCCGCC 59.420 55.000 0.00 0.00 0.00 6.13
1561 1611 0.580104 GTTTATTCGTGATCCCGCCG 59.420 55.000 0.00 0.00 0.00 6.46
1563 1613 1.393487 TTATTCGTGATCCCGCCGGA 61.393 55.000 5.05 0.00 44.33 5.14
1566 1616 4.570663 CGTGATCCCGCCGGAGAC 62.571 72.222 5.05 0.00 43.12 3.36
1578 1628 4.101448 GGAGACGGTGGCTGGCAT 62.101 66.667 7.33 0.00 0.00 4.40
1742 1799 2.434884 CTCACCGCTGCCGTTCAT 60.435 61.111 0.00 0.00 0.00 2.57
1824 1911 1.079127 CGCGTGGGACCTGAAATCT 60.079 57.895 0.00 0.00 0.00 2.40
1827 1920 1.026718 CGTGGGACCTGAAATCTGCC 61.027 60.000 0.00 0.00 0.00 4.85
1862 1955 3.050619 CGCCGATGGAGTGTAAACTATC 58.949 50.000 0.00 0.00 0.00 2.08
2452 2643 0.111253 CTGTTTCCTTGCACTCCCCT 59.889 55.000 0.00 0.00 0.00 4.79
2472 2663 0.106519 AGGAACACAGCAAAGCCACT 60.107 50.000 0.00 0.00 0.00 4.00
2753 2947 2.044492 TCCTCTGGTCCCAGTACTTCAT 59.956 50.000 12.88 0.00 43.96 2.57
2892 3132 2.946990 CACCGTTTACCTGTTTGACCTT 59.053 45.455 0.00 0.00 0.00 3.50
3105 3345 2.949644 ACCCAAGTTGTTGTAACTGAGC 59.050 45.455 1.45 0.00 30.95 4.26
3237 3477 3.149196 GCATGAACACTTCTTCCTCCAA 58.851 45.455 0.00 0.00 0.00 3.53
3781 4043 4.820716 GGATCAGCAGCTGAAGTATCATTT 59.179 41.667 28.78 9.16 44.04 2.32
4033 4352 4.101448 GCCACCGCATCCTCCTGT 62.101 66.667 0.00 0.00 34.03 4.00
4505 4882 2.158871 GGGCGTAGATTGGGATAACACA 60.159 50.000 0.00 0.00 0.00 3.72
4701 5118 6.169557 ACCAACTTCTACAATATGGCGATA 57.830 37.500 0.00 0.00 0.00 2.92
4862 5279 5.514914 TCAAATTGTCGCTCAACAAGTTTTC 59.485 36.000 6.48 0.00 42.79 2.29
5237 5654 6.130298 AGTAGACTTGACGATGATGAAGAG 57.870 41.667 0.00 0.00 0.00 2.85
5309 5726 1.964223 GATGGATGAGCTCCCTCGTTA 59.036 52.381 12.15 0.00 44.23 3.18
5565 5984 4.156008 ACGAACAACAAGTTTCTCAAGCTT 59.844 37.500 0.00 0.00 41.51 3.74
5615 6034 1.206132 CAACATACCAGACCACGCCTA 59.794 52.381 0.00 0.00 0.00 3.93
5619 6038 2.440517 TACCAGACCACGCCTACATA 57.559 50.000 0.00 0.00 0.00 2.29
5812 6252 1.742411 GCGCTGCCTCCACTTGTATTA 60.742 52.381 0.00 0.00 0.00 0.98
5870 6325 2.270205 CGCTCCCTGCACCTGAAT 59.730 61.111 0.00 0.00 43.06 2.57
5891 6346 2.731571 GGACGAGCATACTGGGGCA 61.732 63.158 0.00 0.00 0.00 5.36
6001 6456 2.820330 GCATAGGCTGAAGACTGTCTC 58.180 52.381 11.31 5.64 33.72 3.36
6121 6576 1.213799 GACGACGGGGTTGTAGTCC 59.786 63.158 0.00 0.00 38.19 3.85
6333 6791 1.792757 TTGATGGCTGCCCAGACCTT 61.793 55.000 17.53 0.00 46.24 3.50
6489 6947 2.046314 GGTGACGGTGATGGTGGG 60.046 66.667 0.00 0.00 0.00 4.61
6660 7126 1.075748 ATGGGGCAAAGATGGAGGC 60.076 57.895 0.00 0.00 0.00 4.70
6752 7232 3.244215 CGCTAGGGCTAGATGGATTTTCA 60.244 47.826 0.00 0.00 35.21 2.69
7018 7501 1.227853 GTGTGGGAAGGCTTCACGT 60.228 57.895 27.17 0.00 35.25 4.49
7032 7515 3.175710 ACGTTGCCCAGGGGAAGT 61.176 61.111 13.95 10.60 32.69 3.01
7046 7529 1.066430 GGGAAGTTATGTGAGGTCGCA 60.066 52.381 0.00 0.00 40.98 5.10
7047 7530 2.271800 GGAAGTTATGTGAGGTCGCAG 58.728 52.381 0.00 0.00 39.97 5.18
7048 7531 2.353803 GGAAGTTATGTGAGGTCGCAGT 60.354 50.000 0.00 0.00 39.97 4.40
7093 7576 4.090057 GGTTCTGCGTCGCCAAGC 62.090 66.667 15.88 13.05 0.00 4.01
7106 7589 2.093288 TCGCCAAGCTCTTTGAGATGAT 60.093 45.455 0.00 0.00 39.21 2.45
7120 7603 3.454587 ATGATAAAGCCGCCGCCGA 62.455 57.895 0.00 0.00 36.29 5.54
7158 7641 3.066760 GCTGTTACTATGACAATTGCCCC 59.933 47.826 5.05 0.00 0.00 5.80
7184 7667 4.980805 TGGGTTCGCCGTGCTCAC 62.981 66.667 0.00 0.00 38.45 3.51
7205 7688 2.513204 CATGGAGGTGGAGCGCTG 60.513 66.667 18.48 0.00 0.00 5.18
7206 7689 4.479993 ATGGAGGTGGAGCGCTGC 62.480 66.667 23.36 23.36 0.00 5.25
7271 7754 6.919775 ATATAGCTTAGGTGAAACGAGGAT 57.080 37.500 0.00 0.00 38.12 3.24
7290 7773 4.721776 AGGATCTCCCATGCTGTACTTTAA 59.278 41.667 0.00 0.00 37.41 1.52
7293 7776 6.547510 GGATCTCCCATGCTGTACTTTAAATT 59.452 38.462 0.00 0.00 34.14 1.82
7294 7777 7.719633 GGATCTCCCATGCTGTACTTTAAATTA 59.280 37.037 0.00 0.00 34.14 1.40
7296 7779 7.857456 TCTCCCATGCTGTACTTTAAATTAGA 58.143 34.615 0.00 0.00 0.00 2.10
7297 7780 8.494433 TCTCCCATGCTGTACTTTAAATTAGAT 58.506 33.333 0.00 0.00 0.00 1.98
7298 7781 8.450578 TCCCATGCTGTACTTTAAATTAGATG 57.549 34.615 0.00 0.00 0.00 2.90
7299 7782 7.502226 TCCCATGCTGTACTTTAAATTAGATGG 59.498 37.037 0.00 0.00 0.00 3.51
7300 7783 7.255590 CCCATGCTGTACTTTAAATTAGATGGG 60.256 40.741 0.00 0.00 39.30 4.00
7301 7784 7.285401 CCATGCTGTACTTTAAATTAGATGGGT 59.715 37.037 0.00 0.00 0.00 4.51
7304 7787 9.555727 TGCTGTACTTTAAATTAGATGGGTATC 57.444 33.333 0.00 0.00 0.00 2.24
7321 7804 4.217767 GGGTATCTGATGACTACACGCATA 59.782 45.833 0.00 0.00 0.00 3.14
7322 7805 5.105716 GGGTATCTGATGACTACACGCATAT 60.106 44.000 0.00 0.00 0.00 1.78
7378 7866 6.732531 AATTAGTTTTTACGTGCTACTCCC 57.267 37.500 0.00 0.00 0.00 4.30
7379 7867 5.473066 TTAGTTTTTACGTGCTACTCCCT 57.527 39.130 0.00 0.00 0.00 4.20
7380 7868 3.922910 AGTTTTTACGTGCTACTCCCTC 58.077 45.455 0.00 0.00 0.00 4.30
7381 7869 2.998670 GTTTTTACGTGCTACTCCCTCC 59.001 50.000 0.00 0.00 0.00 4.30
7382 7870 0.813184 TTTACGTGCTACTCCCTCCG 59.187 55.000 0.00 0.00 0.00 4.63
7383 7871 0.322816 TTACGTGCTACTCCCTCCGT 60.323 55.000 0.00 0.00 0.00 4.69
7384 7872 0.322816 TACGTGCTACTCCCTCCGTT 60.323 55.000 0.00 0.00 0.00 4.44
7385 7873 1.139095 CGTGCTACTCCCTCCGTTC 59.861 63.158 0.00 0.00 0.00 3.95
7386 7874 1.592400 CGTGCTACTCCCTCCGTTCA 61.592 60.000 0.00 0.00 0.00 3.18
7387 7875 0.108756 GTGCTACTCCCTCCGTTCAC 60.109 60.000 0.00 0.00 0.00 3.18
7388 7876 0.251653 TGCTACTCCCTCCGTTCACT 60.252 55.000 0.00 0.00 0.00 3.41
7389 7877 0.896226 GCTACTCCCTCCGTTCACTT 59.104 55.000 0.00 0.00 0.00 3.16
7390 7878 1.275573 GCTACTCCCTCCGTTCACTTT 59.724 52.381 0.00 0.00 0.00 2.66
7391 7879 2.289506 GCTACTCCCTCCGTTCACTTTT 60.290 50.000 0.00 0.00 0.00 2.27
7392 7880 3.056322 GCTACTCCCTCCGTTCACTTTTA 60.056 47.826 0.00 0.00 0.00 1.52
7393 7881 4.382793 GCTACTCCCTCCGTTCACTTTTAT 60.383 45.833 0.00 0.00 0.00 1.40
7394 7882 5.163478 GCTACTCCCTCCGTTCACTTTTATA 60.163 44.000 0.00 0.00 0.00 0.98
7395 7883 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
7396 7884 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
7397 7885 5.247792 ACTCCCTCCGTTCACTTTTATAAGT 59.752 40.000 0.00 0.00 45.40 2.24
7398 7886 5.727434 TCCCTCCGTTCACTTTTATAAGTC 58.273 41.667 0.00 0.00 42.67 3.01
7399 7887 5.246656 TCCCTCCGTTCACTTTTATAAGTCA 59.753 40.000 0.00 0.00 42.67 3.41
7400 7888 6.070424 TCCCTCCGTTCACTTTTATAAGTCAT 60.070 38.462 0.00 0.00 42.67 3.06
7401 7889 6.598064 CCCTCCGTTCACTTTTATAAGTCATT 59.402 38.462 0.00 0.00 42.67 2.57
7402 7890 7.120726 CCCTCCGTTCACTTTTATAAGTCATTT 59.879 37.037 0.00 0.00 42.67 2.32
7403 7891 8.512138 CCTCCGTTCACTTTTATAAGTCATTTT 58.488 33.333 0.00 0.00 42.67 1.82
7421 7909 8.515414 AGTCATTTTAGACAACTGAAAATAGGC 58.485 33.333 0.00 0.00 40.98 3.93
7422 7910 8.515414 GTCATTTTAGACAACTGAAAATAGGCT 58.485 33.333 0.00 0.00 35.75 4.58
7423 7911 9.733556 TCATTTTAGACAACTGAAAATAGGCTA 57.266 29.630 0.00 0.00 35.75 3.93
7429 7917 7.315890 AGACAACTGAAAATAGGCTATTTTGC 58.684 34.615 36.95 28.47 45.52 3.68
7430 7918 6.991938 ACAACTGAAAATAGGCTATTTTGCA 58.008 32.000 36.95 30.38 45.52 4.08
7431 7919 6.868339 ACAACTGAAAATAGGCTATTTTGCAC 59.132 34.615 36.95 26.37 45.52 4.57
7432 7920 6.588719 ACTGAAAATAGGCTATTTTGCACA 57.411 33.333 36.95 28.54 45.52 4.57
7433 7921 7.174107 ACTGAAAATAGGCTATTTTGCACAT 57.826 32.000 36.95 20.38 45.52 3.21
7434 7922 7.614494 ACTGAAAATAGGCTATTTTGCACATT 58.386 30.769 36.95 23.92 45.52 2.71
7435 7923 7.546667 ACTGAAAATAGGCTATTTTGCACATTG 59.453 33.333 36.95 24.72 45.52 2.82
7436 7924 7.385267 TGAAAATAGGCTATTTTGCACATTGT 58.615 30.769 36.95 18.56 45.52 2.71
7437 7925 7.545265 TGAAAATAGGCTATTTTGCACATTGTC 59.455 33.333 36.95 24.11 45.52 3.18
7438 7926 6.780457 AATAGGCTATTTTGCACATTGTCT 57.220 33.333 13.96 0.00 34.04 3.41
7439 7927 4.445452 AGGCTATTTTGCACATTGTCTG 57.555 40.909 0.00 0.00 34.04 3.51
7440 7928 4.081406 AGGCTATTTTGCACATTGTCTGA 58.919 39.130 0.00 0.00 34.04 3.27
7441 7929 4.523943 AGGCTATTTTGCACATTGTCTGAA 59.476 37.500 0.00 0.00 34.04 3.02
7442 7930 5.010922 AGGCTATTTTGCACATTGTCTGAAA 59.989 36.000 0.00 0.00 34.04 2.69
7443 7931 5.870978 GGCTATTTTGCACATTGTCTGAAAT 59.129 36.000 0.00 0.00 34.04 2.17
7444 7932 6.183360 GGCTATTTTGCACATTGTCTGAAATG 60.183 38.462 0.00 9.50 42.21 2.32
7446 7934 6.774354 ATTTTGCACATTGTCTGAAATGTC 57.226 33.333 12.25 9.51 45.47 3.06
7447 7935 5.518848 TTTGCACATTGTCTGAAATGTCT 57.481 34.783 12.25 0.00 45.47 3.41
7448 7936 5.518848 TTGCACATTGTCTGAAATGTCTT 57.481 34.783 12.25 0.00 45.47 3.01
7449 7937 5.518848 TGCACATTGTCTGAAATGTCTTT 57.481 34.783 12.25 0.00 45.47 2.52
7450 7938 6.631971 TGCACATTGTCTGAAATGTCTTTA 57.368 33.333 12.25 2.24 45.47 1.85
7451 7939 7.036996 TGCACATTGTCTGAAATGTCTTTAA 57.963 32.000 12.25 0.00 45.47 1.52
7452 7940 7.140705 TGCACATTGTCTGAAATGTCTTTAAG 58.859 34.615 12.25 0.00 45.47 1.85
7453 7941 6.583806 GCACATTGTCTGAAATGTCTTTAAGG 59.416 38.462 12.25 4.96 45.47 2.69
7454 7942 6.583806 CACATTGTCTGAAATGTCTTTAAGGC 59.416 38.462 12.25 0.00 45.47 4.35
7455 7943 5.705609 TTGTCTGAAATGTCTTTAAGGCC 57.294 39.130 0.00 0.00 27.62 5.19
7456 7944 4.985538 TGTCTGAAATGTCTTTAAGGCCT 58.014 39.130 0.00 0.00 27.62 5.19
7457 7945 5.385198 TGTCTGAAATGTCTTTAAGGCCTT 58.615 37.500 24.18 24.18 27.62 4.35
7458 7946 6.539173 TGTCTGAAATGTCTTTAAGGCCTTA 58.461 36.000 21.68 21.68 27.62 2.69
7459 7947 7.175104 TGTCTGAAATGTCTTTAAGGCCTTAT 58.825 34.615 25.70 8.24 27.62 1.73
7460 7948 8.325787 TGTCTGAAATGTCTTTAAGGCCTTATA 58.674 33.333 25.70 19.47 27.62 0.98
7461 7949 9.174166 GTCTGAAATGTCTTTAAGGCCTTATAA 57.826 33.333 25.70 19.28 0.00 0.98
7462 7950 9.747898 TCTGAAATGTCTTTAAGGCCTTATAAA 57.252 29.630 25.70 18.15 0.00 1.40
7467 7955 9.528489 AATGTCTTTAAGGCCTTATAAAAGTGA 57.472 29.630 27.15 19.22 0.00 3.41
7468 7956 8.927675 TGTCTTTAAGGCCTTATAAAAGTGAA 57.072 30.769 27.15 16.36 0.00 3.18
7469 7957 8.789762 TGTCTTTAAGGCCTTATAAAAGTGAAC 58.210 33.333 27.15 21.28 0.00 3.18
7470 7958 8.789762 GTCTTTAAGGCCTTATAAAAGTGAACA 58.210 33.333 27.15 13.20 0.00 3.18
7471 7959 9.010029 TCTTTAAGGCCTTATAAAAGTGAACAG 57.990 33.333 27.15 10.43 0.00 3.16
7472 7960 8.927675 TTTAAGGCCTTATAAAAGTGAACAGA 57.072 30.769 25.70 2.85 0.00 3.41
7473 7961 8.561738 TTAAGGCCTTATAAAAGTGAACAGAG 57.438 34.615 25.70 0.00 0.00 3.35
7474 7962 5.501156 AGGCCTTATAAAAGTGAACAGAGG 58.499 41.667 0.00 0.00 0.00 3.69
7475 7963 4.640647 GGCCTTATAAAAGTGAACAGAGGG 59.359 45.833 0.00 0.00 0.00 4.30
7476 7964 5.497474 GCCTTATAAAAGTGAACAGAGGGA 58.503 41.667 0.00 0.00 0.00 4.20
7477 7965 5.586643 GCCTTATAAAAGTGAACAGAGGGAG 59.413 44.000 0.00 0.00 0.00 4.30
7664 8157 9.029368 TCATCTCTCTTGAAATTCTCAGTCTTA 57.971 33.333 0.00 0.00 34.81 2.10
7680 8173 9.814899 TCTCAGTCTTATCATTTCTCATTTCTC 57.185 33.333 0.00 0.00 0.00 2.87
7694 8187 8.498054 TTCTCATTTCTCAGTTATTGTCATCC 57.502 34.615 0.00 0.00 0.00 3.51
7707 8200 8.543774 AGTTATTGTCATCCATCAGTACTTCTT 58.456 33.333 0.00 0.00 0.00 2.52
7714 8207 4.026744 TCCATCAGTACTTCTTCCTCAGG 58.973 47.826 0.00 0.00 0.00 3.86
7715 8208 4.026744 CCATCAGTACTTCTTCCTCAGGA 58.973 47.826 0.00 0.00 0.00 3.86
7717 8210 5.130145 CCATCAGTACTTCTTCCTCAGGAAT 59.870 44.000 6.60 0.00 41.23 3.01
7718 8211 5.923733 TCAGTACTTCTTCCTCAGGAATC 57.076 43.478 6.60 0.00 41.23 2.52
7719 8212 5.333581 TCAGTACTTCTTCCTCAGGAATCA 58.666 41.667 6.60 0.00 41.23 2.57
7720 8213 5.420421 TCAGTACTTCTTCCTCAGGAATCAG 59.580 44.000 6.60 8.48 41.23 2.90
7765 8270 1.815003 CAGTTCCCCTTTGCAGACATC 59.185 52.381 0.00 0.00 0.00 3.06
7821 8326 9.382275 TCTTCATTATTCATTGAACATCGAGAA 57.618 29.630 0.15 1.90 0.00 2.87
7826 8331 9.994432 ATTATTCATTGAACATCGAGAAAAGAC 57.006 29.630 0.15 0.00 0.00 3.01
7873 8378 9.734620 TTTAATGTTCAGTCATTTGTTTCTCAG 57.265 29.630 0.00 0.00 38.68 3.35
7882 8387 5.576384 GTCATTTGTTTCTCAGTTTGCACAA 59.424 36.000 0.00 0.00 0.00 3.33
7884 8389 4.782019 TTGTTTCTCAGTTTGCACAACT 57.218 36.364 8.03 8.03 0.00 3.16
7889 8394 6.145371 TGTTTCTCAGTTTGCACAACTTTTTC 59.855 34.615 10.38 3.35 0.00 2.29
7919 8425 8.177119 TGACAACTGCCTTTTTCAGTAATTAT 57.823 30.769 0.00 0.00 43.36 1.28
7961 8467 4.148563 CGTCCTACATTATGAGACGGAG 57.851 50.000 20.35 3.29 44.86 4.63
7962 8468 3.058155 CGTCCTACATTATGAGACGGAGG 60.058 52.174 20.35 12.25 44.86 4.30
7963 8469 3.256136 GTCCTACATTATGAGACGGAGGG 59.744 52.174 0.00 0.00 0.00 4.30
7964 8470 3.139584 TCCTACATTATGAGACGGAGGGA 59.860 47.826 0.00 0.00 0.00 4.20
7965 8471 3.508012 CCTACATTATGAGACGGAGGGAG 59.492 52.174 0.00 0.00 0.00 4.30
7966 8472 3.033659 ACATTATGAGACGGAGGGAGT 57.966 47.619 0.00 0.00 0.00 3.85
7967 8473 4.180377 ACATTATGAGACGGAGGGAGTA 57.820 45.455 0.00 0.00 0.00 2.59
7968 8474 3.890147 ACATTATGAGACGGAGGGAGTAC 59.110 47.826 0.00 0.00 0.00 2.73
7969 8475 2.653234 TATGAGACGGAGGGAGTACC 57.347 55.000 0.00 0.00 40.67 3.34
7970 8476 0.629596 ATGAGACGGAGGGAGTACCA 59.370 55.000 0.00 0.00 43.89 3.25
8060 8566 6.365520 AGCTTCTTTTCCTCAGGTTTTCTTA 58.634 36.000 0.00 0.00 0.00 2.10
8063 8569 8.793592 GCTTCTTTTCCTCAGGTTTTCTTAATA 58.206 33.333 0.00 0.00 0.00 0.98
8088 8594 3.492829 CCCCTTCGGTATCTTACTCTTGC 60.493 52.174 0.00 0.00 0.00 4.01
8092 8598 5.292101 CCTTCGGTATCTTACTCTTGCTTTG 59.708 44.000 0.00 0.00 0.00 2.77
8094 8600 5.408356 TCGGTATCTTACTCTTGCTTTGAC 58.592 41.667 0.00 0.00 0.00 3.18
8098 8604 7.544566 CGGTATCTTACTCTTGCTTTGACTTTA 59.455 37.037 0.00 0.00 0.00 1.85
8127 8633 5.482878 TCTTTCCCGATAGTTTTCAGTACCT 59.517 40.000 0.00 0.00 0.00 3.08
8130 8636 6.855763 TCCCGATAGTTTTCAGTACCTTAA 57.144 37.500 0.00 0.00 0.00 1.85
8131 8637 7.243604 TCCCGATAGTTTTCAGTACCTTAAA 57.756 36.000 0.00 0.00 0.00 1.52
8175 8681 6.165700 AGGAAAGAAAATGAGTGTTGCAAT 57.834 33.333 0.59 0.00 0.00 3.56
8186 8692 9.630098 AAATGAGTGTTGCAATACTCTTTTATG 57.370 29.630 39.05 0.00 44.61 1.90
8190 8696 8.177119 AGTGTTGCAATACTCTTTTATGGAAA 57.823 30.769 21.72 0.00 0.00 3.13
8274 8781 4.060900 CAAACTTGCTGAAGAGAGTAGCA 58.939 43.478 0.00 0.00 44.92 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.309138 TGTGTGCGCGTCTTTACTAAAAA 59.691 39.130 8.43 0.00 0.00 1.94
16 17 2.864946 TGTGTGCGCGTCTTTACTAAAA 59.135 40.909 8.43 0.00 0.00 1.52
18 19 1.788308 GTGTGTGCGCGTCTTTACTAA 59.212 47.619 8.43 0.00 0.00 2.24
19 20 1.001048 AGTGTGTGCGCGTCTTTACTA 60.001 47.619 8.43 0.00 0.00 1.82
20 21 0.249322 AGTGTGTGCGCGTCTTTACT 60.249 50.000 8.43 4.76 0.00 2.24
22 23 1.292061 AAAGTGTGTGCGCGTCTTTA 58.708 45.000 8.43 0.00 0.00 1.85
23 24 0.450184 AAAAGTGTGTGCGCGTCTTT 59.550 45.000 8.43 6.13 0.00 2.52
24 25 0.450184 AAAAAGTGTGTGCGCGTCTT 59.550 45.000 8.43 0.00 0.00 3.01
25 26 2.094904 AAAAAGTGTGTGCGCGTCT 58.905 47.368 8.43 0.00 0.00 4.18
26 27 4.682306 AAAAAGTGTGTGCGCGTC 57.318 50.000 8.43 0.00 0.00 5.19
47 48 0.249322 AGTGTGTGCGCGTCTTTACT 60.249 50.000 8.43 4.76 0.00 2.24
50 51 1.351707 CAAGTGTGTGCGCGTCTTT 59.648 52.632 8.43 0.00 0.00 2.52
52 53 2.202878 ACAAGTGTGTGCGCGTCT 60.203 55.556 8.43 0.00 36.31 4.18
98 102 2.202932 CCATGGGCCGAACGAGAG 60.203 66.667 2.85 0.00 0.00 3.20
133 137 5.553952 CGCCGACGATTTCTATTGAAGTAAC 60.554 44.000 0.00 0.00 43.93 2.50
136 140 2.858344 CGCCGACGATTTCTATTGAAGT 59.142 45.455 0.00 0.00 43.93 3.01
137 141 3.113322 TCGCCGACGATTTCTATTGAAG 58.887 45.455 0.00 0.00 45.12 3.02
139 143 2.855660 TCGCCGACGATTTCTATTGA 57.144 45.000 0.00 0.00 45.12 2.57
150 154 1.352114 TTTTGAGGTATTCGCCGACG 58.648 50.000 0.00 0.00 42.01 5.12
170 174 4.196193 TGGTCGCCGATGATTTCTATTTT 58.804 39.130 0.00 0.00 0.00 1.82
182 186 2.107950 TCAGAAATTTGGTCGCCGAT 57.892 45.000 0.00 0.00 0.00 4.18
206 210 1.522355 CTGACATACGGCCCTGCTG 60.522 63.158 0.00 0.00 41.29 4.41
294 302 8.579850 TCACTCCAATTAATGCTCTGTTTAAT 57.420 30.769 0.00 0.00 31.11 1.40
318 326 5.102313 GGTCCGACATTTCCATCATTTTTC 58.898 41.667 0.00 0.00 0.00 2.29
520 546 1.176527 TTGCTGCCACTAATGCCTTC 58.823 50.000 0.00 0.00 0.00 3.46
783 817 7.987458 AGAATTACACCATTGGATGTACTAGTG 59.013 37.037 10.37 0.00 31.09 2.74
797 831 6.777580 ACAGGTTCAAGAAAGAATTACACCAT 59.222 34.615 0.00 0.00 0.00 3.55
857 907 1.605710 AGTGTGTTCTCATTGCAGCAC 59.394 47.619 0.00 0.00 0.00 4.40
963 1013 2.364186 TCCTGGATCCTCGCTGCA 60.364 61.111 14.23 0.00 0.00 4.41
965 1015 1.462731 CCTCTCCTGGATCCTCGCTG 61.463 65.000 14.23 0.00 0.00 5.18
982 1032 0.036306 ATCGTCTCCGGCAAAAACCT 59.964 50.000 0.00 0.00 33.95 3.50
983 1033 0.168128 CATCGTCTCCGGCAAAAACC 59.832 55.000 0.00 0.00 33.95 3.27
986 1036 1.019278 GCTCATCGTCTCCGGCAAAA 61.019 55.000 0.00 0.00 33.95 2.44
989 1039 3.838271 GGCTCATCGTCTCCGGCA 61.838 66.667 0.00 0.00 33.95 5.69
990 1040 4.933064 CGGCTCATCGTCTCCGGC 62.933 72.222 0.00 0.00 38.35 6.13
993 1043 4.933064 CGCCGGCTCATCGTCTCC 62.933 72.222 26.68 0.00 0.00 3.71
994 1044 4.933064 CCGCCGGCTCATCGTCTC 62.933 72.222 26.68 0.00 0.00 3.36
1041 1091 1.444553 GTGTGAGACGGGAGAAGCG 60.445 63.158 0.00 0.00 0.00 4.68
1056 1106 4.314440 ATGCGGTGGAGCGTGTGT 62.314 61.111 0.00 0.00 40.67 3.72
1063 1113 2.438434 GGGGTTGATGCGGTGGAG 60.438 66.667 0.00 0.00 0.00 3.86
1066 1116 2.819595 CGAGGGGTTGATGCGGTG 60.820 66.667 0.00 0.00 0.00 4.94
1143 1193 1.443407 CTCCATCGTCATCGCCCTT 59.557 57.895 0.00 0.00 36.96 3.95
1149 1199 2.663188 GCCGCCTCCATCGTCATC 60.663 66.667 0.00 0.00 0.00 2.92
1164 1214 1.300233 CCTCGTATTCGCCTCTGCC 60.300 63.158 0.00 0.00 36.96 4.85
1167 1217 0.178998 TAGCCCTCGTATTCGCCTCT 60.179 55.000 0.00 0.00 36.96 3.69
1168 1218 0.672342 TTAGCCCTCGTATTCGCCTC 59.328 55.000 0.00 0.00 36.96 4.70
1172 1222 1.334779 CCGTCTTAGCCCTCGTATTCG 60.335 57.143 0.00 0.00 38.55 3.34
1177 1227 1.753463 CCTCCGTCTTAGCCCTCGT 60.753 63.158 0.00 0.00 0.00 4.18
1232 1282 1.348775 GGAGAAGGTCATGGAGGGGG 61.349 65.000 0.00 0.00 0.00 5.40
1339 1389 5.294799 CCCGGTAATATTTTGTGTCATCGAA 59.705 40.000 0.00 0.00 0.00 3.71
1344 1394 4.696402 GTGACCCGGTAATATTTTGTGTCA 59.304 41.667 0.00 0.00 0.00 3.58
1349 1399 4.186159 AGTCGTGACCCGGTAATATTTTG 58.814 43.478 0.00 0.00 37.11 2.44
1352 1402 3.025978 TGAGTCGTGACCCGGTAATATT 58.974 45.455 0.00 0.00 37.11 1.28
1355 1405 0.815734 CTGAGTCGTGACCCGGTAAT 59.184 55.000 0.00 0.00 37.11 1.89
1358 1408 2.989824 CCTGAGTCGTGACCCGGT 60.990 66.667 0.00 0.00 37.11 5.28
1363 1413 2.433318 GCTGCCCTGAGTCGTGAC 60.433 66.667 0.00 0.00 0.00 3.67
1386 1436 2.408022 GGCGCATCGTCGTAGAGT 59.592 61.111 10.83 0.00 36.95 3.24
1488 1538 2.743636 ACCGTGTGGAGTGTATGAAG 57.256 50.000 0.00 0.00 39.21 3.02
1543 1593 0.531090 CCGGCGGGATCACGAATAAA 60.531 55.000 24.26 0.00 35.47 1.40
1545 1595 1.802337 CTCCGGCGGGATCACGAATA 61.802 60.000 27.98 1.44 42.83 1.75
1546 1596 3.151710 TCCGGCGGGATCACGAAT 61.152 61.111 27.98 0.00 37.43 3.34
1547 1597 3.833645 CTCCGGCGGGATCACGAA 61.834 66.667 27.98 2.24 42.83 3.85
1549 1599 4.570663 GTCTCCGGCGGGATCACG 62.571 72.222 27.98 14.47 42.83 4.35
1550 1600 4.570663 CGTCTCCGGCGGGATCAC 62.571 72.222 27.98 15.74 42.83 3.06
1561 1611 3.628646 AATGCCAGCCACCGTCTCC 62.629 63.158 0.00 0.00 0.00 3.71
1563 1613 2.360350 CAATGCCAGCCACCGTCT 60.360 61.111 0.00 0.00 0.00 4.18
1578 1628 3.693411 GGCGGAAAGGAATGCCAA 58.307 55.556 0.00 0.00 46.76 4.52
1848 1941 4.931661 TCCCATCGATAGTTTACACTCC 57.068 45.455 0.00 0.00 34.06 3.85
1849 1942 4.745620 GCTTCCCATCGATAGTTTACACTC 59.254 45.833 0.00 0.00 34.06 3.51
1850 1943 4.694339 GCTTCCCATCGATAGTTTACACT 58.306 43.478 0.00 0.00 36.99 3.55
1862 1955 0.673985 TGGAGATACGCTTCCCATCG 59.326 55.000 0.00 0.00 0.00 3.84
2452 2643 1.142870 AGTGGCTTTGCTGTGTTCCTA 59.857 47.619 0.00 0.00 0.00 2.94
2472 2663 7.417911 GGTGTGTTGATGATAGGAGATCTACAA 60.418 40.741 7.93 0.00 36.52 2.41
2753 2947 8.731275 TCAGAAAAACTTACAATTGAGAGTGA 57.269 30.769 13.59 5.25 0.00 3.41
2892 3132 4.854173 TCTGCATTACTTCCTTGGCATAA 58.146 39.130 0.00 0.00 0.00 1.90
3105 3345 3.798337 GGCATGGTATTCAAAATTGAGCG 59.202 43.478 0.00 0.00 38.61 5.03
3237 3477 1.673920 ACGCGTTTCTTCATGGTGTTT 59.326 42.857 5.58 0.00 0.00 2.83
3714 3955 0.321671 GGTAACAGCAGCTCCTCACA 59.678 55.000 0.00 0.00 0.00 3.58
3781 4043 1.687146 AGAGGCGGGATCTTCTGCA 60.687 57.895 5.32 0.00 40.61 4.41
4257 4627 6.735229 TCTCCCTGAATATATGCCTAATCCAA 59.265 38.462 0.00 0.00 0.00 3.53
4298 4668 2.803155 AATGCGGGCGCTCTTCTTCA 62.803 55.000 5.36 0.00 42.51 3.02
4505 4882 6.306987 ACTCTCTCAAAATATTTGGGTGTGT 58.693 36.000 0.39 5.03 0.00 3.72
4677 5094 4.839121 TCGCCATATTGTAGAAGTTGGTT 58.161 39.130 5.76 0.00 0.00 3.67
4725 5142 1.478916 CATGCCCACATGCTCATCAAA 59.521 47.619 0.00 0.00 46.75 2.69
4862 5279 8.515414 AGTTTTCTCTATTTTCCAAGAATTCCG 58.485 33.333 0.65 0.00 0.00 4.30
5145 5562 6.206829 ACATCCGTCATCGATCATAGTTAAGA 59.793 38.462 0.00 0.00 39.71 2.10
5237 5654 1.031029 ACGTCGAGAGCCCTTAGTCC 61.031 60.000 0.00 0.00 0.00 3.85
5588 6007 4.620567 CGTGGTCTGGTATGTTGATTCTGA 60.621 45.833 0.00 0.00 0.00 3.27
5590 6009 3.861840 CGTGGTCTGGTATGTTGATTCT 58.138 45.455 0.00 0.00 0.00 2.40
5615 6034 2.238646 TCCGGGAACAGCAAGAATATGT 59.761 45.455 0.00 0.00 0.00 2.29
5619 6038 1.743772 CGATCCGGGAACAGCAAGAAT 60.744 52.381 0.00 0.00 0.00 2.40
5812 6252 4.626081 GGCGGCGGCTATGGTCAT 62.626 66.667 27.22 0.00 39.81 3.06
5870 6325 0.251916 CCCCAGTATGCTCGTCCAAA 59.748 55.000 0.00 0.00 31.97 3.28
5989 6444 1.613925 CTGAACCCGAGACAGTCTTCA 59.386 52.381 4.05 3.16 0.00 3.02
6099 6554 1.941999 CTACAACCCCGTCGTCTCCC 61.942 65.000 0.00 0.00 0.00 4.30
6625 7086 2.092212 CCCATCATCCAGCACTACCTTT 60.092 50.000 0.00 0.00 0.00 3.11
6626 7087 1.492176 CCCATCATCCAGCACTACCTT 59.508 52.381 0.00 0.00 0.00 3.50
6627 7088 1.135094 CCCATCATCCAGCACTACCT 58.865 55.000 0.00 0.00 0.00 3.08
6660 7126 1.540363 CCCTTACCACCGATTCATCCG 60.540 57.143 0.00 0.00 0.00 4.18
6697 7166 1.602327 GAACTACCTCCTCCGCCGTT 61.602 60.000 0.00 0.00 0.00 4.44
6752 7232 3.206412 TCAGAGCCTCTTCCTCCTAGATT 59.794 47.826 0.00 0.00 0.00 2.40
7018 7501 1.080638 ACATAACTTCCCCTGGGCAA 58.919 50.000 7.39 0.00 34.68 4.52
7032 7515 2.953466 GGTACTGCGACCTCACATAA 57.047 50.000 0.00 0.00 36.47 1.90
7047 7530 2.264794 CCCAGGTGCACGAGGTAC 59.735 66.667 20.62 3.28 0.00 3.34
7048 7531 3.702048 GCCCAGGTGCACGAGGTA 61.702 66.667 20.62 0.00 0.00 3.08
7087 7570 5.732810 GCTTTATCATCTCAAAGAGCTTGGC 60.733 44.000 0.00 0.00 34.35 4.52
7093 7576 3.249559 GGCGGCTTTATCATCTCAAAGAG 59.750 47.826 0.00 0.00 34.35 2.85
7162 7645 1.006688 GCACGGCGAACCCAATTTT 60.007 52.632 16.62 0.00 0.00 1.82
7167 7650 4.980805 GTGAGCACGGCGAACCCA 62.981 66.667 16.62 3.06 0.00 4.51
7184 7667 4.864334 GCTCCACCTCCATGCCGG 62.864 72.222 0.00 0.00 0.00 6.13
7189 7672 4.479993 GCAGCGCTCCACCTCCAT 62.480 66.667 7.13 0.00 0.00 3.41
7271 7754 7.857456 TCTAATTTAAAGTACAGCATGGGAGA 58.143 34.615 0.00 0.00 43.62 3.71
7290 7773 8.589338 GTGTAGTCATCAGATACCCATCTAATT 58.411 37.037 0.00 0.00 39.62 1.40
7293 7776 5.705905 CGTGTAGTCATCAGATACCCATCTA 59.294 44.000 0.00 0.00 39.62 1.98
7294 7777 4.520874 CGTGTAGTCATCAGATACCCATCT 59.479 45.833 0.00 0.00 42.52 2.90
7296 7779 3.005897 GCGTGTAGTCATCAGATACCCAT 59.994 47.826 0.00 0.00 0.00 4.00
7297 7780 2.361119 GCGTGTAGTCATCAGATACCCA 59.639 50.000 0.00 0.00 0.00 4.51
7298 7781 2.361119 TGCGTGTAGTCATCAGATACCC 59.639 50.000 0.00 0.00 0.00 3.69
7299 7782 3.710326 TGCGTGTAGTCATCAGATACC 57.290 47.619 0.00 0.00 0.00 2.73
7300 7783 5.287274 GCATATGCGTGTAGTCATCAGATAC 59.713 44.000 12.82 0.00 0.00 2.24
7301 7784 5.048083 TGCATATGCGTGTAGTCATCAGATA 60.048 40.000 22.21 0.00 45.83 1.98
7303 7786 3.068024 TGCATATGCGTGTAGTCATCAGA 59.932 43.478 22.21 0.00 45.83 3.27
7304 7787 3.383761 TGCATATGCGTGTAGTCATCAG 58.616 45.455 22.21 0.00 45.83 2.90
7356 7844 6.046290 AGGGAGTAGCACGTAAAAACTAAT 57.954 37.500 0.00 0.00 0.00 1.73
7364 7852 0.322816 ACGGAGGGAGTAGCACGTAA 60.323 55.000 0.00 0.00 32.30 3.18
7365 7853 0.322816 AACGGAGGGAGTAGCACGTA 60.323 55.000 0.00 0.00 33.85 3.57
7366 7854 1.593296 GAACGGAGGGAGTAGCACGT 61.593 60.000 0.00 0.00 35.95 4.49
7367 7855 1.139095 GAACGGAGGGAGTAGCACG 59.861 63.158 0.00 0.00 0.00 5.34
7368 7856 0.108756 GTGAACGGAGGGAGTAGCAC 60.109 60.000 0.00 0.00 0.00 4.40
7369 7857 0.251653 AGTGAACGGAGGGAGTAGCA 60.252 55.000 0.00 0.00 0.00 3.49
7370 7858 0.896226 AAGTGAACGGAGGGAGTAGC 59.104 55.000 0.00 0.00 0.00 3.58
7371 7859 3.679824 AAAAGTGAACGGAGGGAGTAG 57.320 47.619 0.00 0.00 0.00 2.57
7372 7860 6.438425 ACTTATAAAAGTGAACGGAGGGAGTA 59.562 38.462 0.00 0.00 44.40 2.59
7373 7861 5.247792 ACTTATAAAAGTGAACGGAGGGAGT 59.752 40.000 0.00 0.00 44.40 3.85
7374 7862 5.731591 ACTTATAAAAGTGAACGGAGGGAG 58.268 41.667 0.00 0.00 44.40 4.30
7375 7863 5.246656 TGACTTATAAAAGTGAACGGAGGGA 59.753 40.000 0.00 0.00 46.09 4.20
7376 7864 5.484715 TGACTTATAAAAGTGAACGGAGGG 58.515 41.667 0.00 0.00 46.09 4.30
7377 7865 7.611213 AATGACTTATAAAAGTGAACGGAGG 57.389 36.000 0.00 0.00 46.09 4.30
7395 7883 8.515414 GCCTATTTTCAGTTGTCTAAAATGACT 58.485 33.333 0.00 0.00 37.79 3.41
7396 7884 8.515414 AGCCTATTTTCAGTTGTCTAAAATGAC 58.485 33.333 0.00 0.00 35.20 3.06
7397 7885 8.635765 AGCCTATTTTCAGTTGTCTAAAATGA 57.364 30.769 0.00 0.00 35.20 2.57
7403 7891 8.458843 GCAAAATAGCCTATTTTCAGTTGTCTA 58.541 33.333 17.44 0.00 44.20 2.59
7404 7892 7.039784 TGCAAAATAGCCTATTTTCAGTTGTCT 60.040 33.333 17.44 0.00 44.20 3.41
7405 7893 7.062255 GTGCAAAATAGCCTATTTTCAGTTGTC 59.938 37.037 17.44 6.45 44.20 3.18
7406 7894 6.868339 GTGCAAAATAGCCTATTTTCAGTTGT 59.132 34.615 17.44 0.00 44.20 3.32
7407 7895 6.867816 TGTGCAAAATAGCCTATTTTCAGTTG 59.132 34.615 17.44 9.66 44.20 3.16
7408 7896 6.991938 TGTGCAAAATAGCCTATTTTCAGTT 58.008 32.000 17.44 0.00 44.20 3.16
7409 7897 6.588719 TGTGCAAAATAGCCTATTTTCAGT 57.411 33.333 17.44 0.00 44.20 3.41
7410 7898 7.546667 ACAATGTGCAAAATAGCCTATTTTCAG 59.453 33.333 17.44 10.18 44.20 3.02
7411 7899 7.385267 ACAATGTGCAAAATAGCCTATTTTCA 58.615 30.769 17.44 13.58 44.20 2.69
7412 7900 7.761249 AGACAATGTGCAAAATAGCCTATTTTC 59.239 33.333 17.44 13.19 44.20 2.29
7413 7901 7.546667 CAGACAATGTGCAAAATAGCCTATTTT 59.453 33.333 15.12 15.12 46.23 1.82
7414 7902 7.037438 CAGACAATGTGCAAAATAGCCTATTT 58.963 34.615 3.83 3.83 39.92 1.40
7415 7903 6.377996 TCAGACAATGTGCAAAATAGCCTATT 59.622 34.615 0.00 0.00 0.00 1.73
7416 7904 5.887598 TCAGACAATGTGCAAAATAGCCTAT 59.112 36.000 0.00 0.00 0.00 2.57
7417 7905 5.252547 TCAGACAATGTGCAAAATAGCCTA 58.747 37.500 0.00 0.00 0.00 3.93
7418 7906 4.081406 TCAGACAATGTGCAAAATAGCCT 58.919 39.130 0.00 0.00 0.00 4.58
7419 7907 4.439305 TCAGACAATGTGCAAAATAGCC 57.561 40.909 0.00 0.00 0.00 3.93
7420 7908 6.366877 ACATTTCAGACAATGTGCAAAATAGC 59.633 34.615 0.00 0.00 44.19 2.97
7421 7909 7.811236 AGACATTTCAGACAATGTGCAAAATAG 59.189 33.333 12.82 0.00 45.55 1.73
7422 7910 7.660112 AGACATTTCAGACAATGTGCAAAATA 58.340 30.769 12.82 0.00 45.55 1.40
7423 7911 6.518493 AGACATTTCAGACAATGTGCAAAAT 58.482 32.000 12.82 0.00 45.55 1.82
7424 7912 5.904941 AGACATTTCAGACAATGTGCAAAA 58.095 33.333 12.82 0.00 45.55 2.44
7425 7913 5.518848 AGACATTTCAGACAATGTGCAAA 57.481 34.783 12.82 0.00 45.55 3.68
7426 7914 5.518848 AAGACATTTCAGACAATGTGCAA 57.481 34.783 12.82 0.00 45.55 4.08
7427 7915 5.518848 AAAGACATTTCAGACAATGTGCA 57.481 34.783 12.82 0.00 45.55 4.57
7428 7916 6.583806 CCTTAAAGACATTTCAGACAATGTGC 59.416 38.462 12.82 7.29 45.55 4.57
7429 7917 6.583806 GCCTTAAAGACATTTCAGACAATGTG 59.416 38.462 12.82 2.69 45.55 3.21
7431 7919 6.071728 AGGCCTTAAAGACATTTCAGACAATG 60.072 38.462 0.00 0.00 39.67 2.82
7432 7920 6.012745 AGGCCTTAAAGACATTTCAGACAAT 58.987 36.000 0.00 0.00 0.00 2.71
7433 7921 5.385198 AGGCCTTAAAGACATTTCAGACAA 58.615 37.500 0.00 0.00 0.00 3.18
7434 7922 4.985538 AGGCCTTAAAGACATTTCAGACA 58.014 39.130 0.00 0.00 0.00 3.41
7435 7923 5.966742 AAGGCCTTAAAGACATTTCAGAC 57.033 39.130 18.87 0.00 0.00 3.51
7436 7924 9.747898 TTTATAAGGCCTTAAAGACATTTCAGA 57.252 29.630 28.50 3.11 0.00 3.27
7441 7929 9.528489 TCACTTTTATAAGGCCTTAAAGACATT 57.472 29.630 32.05 18.10 35.61 2.71
7442 7930 9.528489 TTCACTTTTATAAGGCCTTAAAGACAT 57.472 29.630 32.05 19.52 35.61 3.06
7443 7931 8.789762 GTTCACTTTTATAAGGCCTTAAAGACA 58.210 33.333 32.05 20.36 35.61 3.41
7444 7932 8.789762 TGTTCACTTTTATAAGGCCTTAAAGAC 58.210 33.333 32.05 23.56 35.61 3.01
7445 7933 8.927675 TGTTCACTTTTATAAGGCCTTAAAGA 57.072 30.769 32.05 20.33 35.61 2.52
7446 7934 9.010029 TCTGTTCACTTTTATAAGGCCTTAAAG 57.990 33.333 28.50 27.60 35.61 1.85
7447 7935 8.927675 TCTGTTCACTTTTATAAGGCCTTAAA 57.072 30.769 28.50 18.33 35.61 1.52
7448 7936 7.610305 CCTCTGTTCACTTTTATAAGGCCTTAA 59.390 37.037 28.50 13.03 35.61 1.85
7449 7937 7.110155 CCTCTGTTCACTTTTATAAGGCCTTA 58.890 38.462 27.11 27.11 35.61 2.69
7450 7938 5.946377 CCTCTGTTCACTTTTATAAGGCCTT 59.054 40.000 24.18 24.18 35.61 4.35
7451 7939 5.501156 CCTCTGTTCACTTTTATAAGGCCT 58.499 41.667 0.00 0.00 35.61 5.19
7452 7940 4.640647 CCCTCTGTTCACTTTTATAAGGCC 59.359 45.833 0.00 0.00 35.61 5.19
7453 7941 5.497474 TCCCTCTGTTCACTTTTATAAGGC 58.503 41.667 0.00 0.00 35.61 4.35
7454 7942 6.712276 ACTCCCTCTGTTCACTTTTATAAGG 58.288 40.000 0.00 0.00 35.61 2.69
7455 7943 7.764901 GGTACTCCCTCTGTTCACTTTTATAAG 59.235 40.741 0.00 0.00 37.40 1.73
7456 7944 7.456902 AGGTACTCCCTCTGTTCACTTTTATAA 59.543 37.037 0.00 0.00 40.71 0.98
7457 7945 6.958192 AGGTACTCCCTCTGTTCACTTTTATA 59.042 38.462 0.00 0.00 40.71 0.98
7458 7946 5.785940 AGGTACTCCCTCTGTTCACTTTTAT 59.214 40.000 0.00 0.00 40.71 1.40
7459 7947 5.011738 CAGGTACTCCCTCTGTTCACTTTTA 59.988 44.000 0.00 0.00 43.86 1.52
7460 7948 3.974642 AGGTACTCCCTCTGTTCACTTTT 59.025 43.478 0.00 0.00 40.71 2.27
7461 7949 3.325135 CAGGTACTCCCTCTGTTCACTTT 59.675 47.826 0.00 0.00 43.86 2.66
7462 7950 2.900546 CAGGTACTCCCTCTGTTCACTT 59.099 50.000 0.00 0.00 43.86 3.16
7463 7951 2.530701 CAGGTACTCCCTCTGTTCACT 58.469 52.381 0.00 0.00 43.86 3.41
7464 7952 1.066787 GCAGGTACTCCCTCTGTTCAC 60.067 57.143 0.00 0.00 43.86 3.18
7465 7953 1.267121 GCAGGTACTCCCTCTGTTCA 58.733 55.000 0.00 0.00 43.86 3.18
7466 7954 1.267121 TGCAGGTACTCCCTCTGTTC 58.733 55.000 0.00 0.00 43.86 3.18
7467 7955 1.958288 ATGCAGGTACTCCCTCTGTT 58.042 50.000 0.00 0.00 43.86 3.16
7468 7956 1.958288 AATGCAGGTACTCCCTCTGT 58.042 50.000 0.00 0.00 43.86 3.41
7469 7957 2.026822 ACAAATGCAGGTACTCCCTCTG 60.027 50.000 0.00 0.00 43.86 3.35
7470 7958 2.269940 ACAAATGCAGGTACTCCCTCT 58.730 47.619 0.00 0.00 43.86 3.69
7471 7959 2.789409 ACAAATGCAGGTACTCCCTC 57.211 50.000 0.00 0.00 43.86 4.30
7473 7961 2.231235 CCAAACAAATGCAGGTACTCCC 59.769 50.000 0.00 0.00 34.60 4.30
7474 7962 2.352715 GCCAAACAAATGCAGGTACTCC 60.353 50.000 0.00 0.00 34.60 3.85
7475 7963 2.295909 TGCCAAACAAATGCAGGTACTC 59.704 45.455 0.00 0.00 34.60 2.59
7476 7964 2.315176 TGCCAAACAAATGCAGGTACT 58.685 42.857 0.00 0.00 43.88 2.73
7477 7965 2.810439 TGCCAAACAAATGCAGGTAC 57.190 45.000 0.00 0.00 0.00 3.34
7482 7970 4.305769 GACAACTATGCCAAACAAATGCA 58.694 39.130 0.00 0.00 39.68 3.96
7488 7976 1.795872 CGACGACAACTATGCCAAACA 59.204 47.619 0.00 0.00 0.00 2.83
7545 8034 5.421374 AGCCCGTCAGACTTAAGTATTTACT 59.579 40.000 8.42 0.00 38.39 2.24
7639 8132 9.820725 ATAAGACTGAGAATTTCAAGAGAGATG 57.179 33.333 0.00 0.00 34.81 2.90
7680 8173 7.984050 AGAAGTACTGATGGATGACAATAACTG 59.016 37.037 0.00 0.00 0.00 3.16
7686 8179 5.485353 AGGAAGAAGTACTGATGGATGACAA 59.515 40.000 0.00 0.00 0.00 3.18
7694 8187 5.667539 TTCCTGAGGAAGAAGTACTGATG 57.332 43.478 10.46 0.00 36.71 3.07
7707 8200 7.921041 AATAACTATGACTGATTCCTGAGGA 57.079 36.000 0.00 0.00 0.00 3.71
7750 8255 5.420104 AGATAAAAAGATGTCTGCAAAGGGG 59.580 40.000 0.00 0.00 0.00 4.79
7765 8270 9.884465 ACGATTTGAGAAACTGAAGATAAAAAG 57.116 29.630 0.00 0.00 0.00 2.27
7789 8294 9.778993 ATGTTCAATGAATAATGAAGAAGAACG 57.221 29.630 0.00 0.00 36.31 3.95
7808 8313 4.703897 ACTGGTCTTTTCTCGATGTTCAA 58.296 39.130 0.00 0.00 0.00 2.69
7821 8326 6.590234 AACAAACAGAGAAAACTGGTCTTT 57.410 33.333 0.00 0.00 41.59 2.52
7873 8378 6.090628 TGTCATTCTGAAAAAGTTGTGCAAAC 59.909 34.615 0.00 0.00 0.00 2.93
7882 8387 4.646492 AGGCAGTTGTCATTCTGAAAAAGT 59.354 37.500 8.98 0.00 34.02 2.66
7884 8389 5.596836 AAGGCAGTTGTCATTCTGAAAAA 57.403 34.783 8.98 0.00 34.02 1.94
7889 8394 4.935702 TGAAAAAGGCAGTTGTCATTCTG 58.064 39.130 0.00 2.39 35.12 3.02
7935 8441 5.579511 CCGTCTCATAATGTAGGACGTTTTT 59.420 40.000 11.70 0.00 45.22 1.94
7936 8442 5.105635 TCCGTCTCATAATGTAGGACGTTTT 60.106 40.000 11.70 0.00 45.22 2.43
7937 8443 4.400251 TCCGTCTCATAATGTAGGACGTTT 59.600 41.667 11.70 0.00 45.22 3.60
7938 8444 3.949754 TCCGTCTCATAATGTAGGACGTT 59.050 43.478 11.70 0.00 45.22 3.99
7939 8445 3.548770 TCCGTCTCATAATGTAGGACGT 58.451 45.455 11.70 0.00 45.22 4.34
7940 8446 3.058155 CCTCCGTCTCATAATGTAGGACG 60.058 52.174 0.00 0.00 45.92 4.79
7941 8447 3.256136 CCCTCCGTCTCATAATGTAGGAC 59.744 52.174 0.00 0.00 0.00 3.85
7942 8448 3.139584 TCCCTCCGTCTCATAATGTAGGA 59.860 47.826 0.00 0.00 0.00 2.94
7943 8449 3.497332 TCCCTCCGTCTCATAATGTAGG 58.503 50.000 0.00 0.00 0.00 3.18
7944 8450 4.145807 ACTCCCTCCGTCTCATAATGTAG 58.854 47.826 0.00 0.00 0.00 2.74
7945 8451 4.180377 ACTCCCTCCGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
7946 8452 3.033659 ACTCCCTCCGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
7947 8453 3.256136 GGTACTCCCTCCGTCTCATAATG 59.744 52.174 0.00 0.00 0.00 1.90
7948 8454 3.117246 TGGTACTCCCTCCGTCTCATAAT 60.117 47.826 0.00 0.00 0.00 1.28
7949 8455 2.242965 TGGTACTCCCTCCGTCTCATAA 59.757 50.000 0.00 0.00 0.00 1.90
7950 8456 1.848388 TGGTACTCCCTCCGTCTCATA 59.152 52.381 0.00 0.00 0.00 2.15
7951 8457 0.629596 TGGTACTCCCTCCGTCTCAT 59.370 55.000 0.00 0.00 0.00 2.90
7952 8458 0.406750 TTGGTACTCCCTCCGTCTCA 59.593 55.000 0.00 0.00 0.00 3.27
7953 8459 1.104630 CTTGGTACTCCCTCCGTCTC 58.895 60.000 0.00 0.00 0.00 3.36
7954 8460 0.408700 ACTTGGTACTCCCTCCGTCT 59.591 55.000 0.00 0.00 0.00 4.18
7955 8461 2.134789 TACTTGGTACTCCCTCCGTC 57.865 55.000 0.00 0.00 0.00 4.79
7956 8462 2.842645 ATACTTGGTACTCCCTCCGT 57.157 50.000 0.00 0.00 0.00 4.69
7957 8463 4.648307 ACTAAATACTTGGTACTCCCTCCG 59.352 45.833 0.00 0.00 0.00 4.63
7958 8464 5.424573 ACACTAAATACTTGGTACTCCCTCC 59.575 44.000 0.00 0.00 0.00 4.30
7959 8465 6.541934 ACACTAAATACTTGGTACTCCCTC 57.458 41.667 0.00 0.00 0.00 4.30
7960 8466 6.499350 TGAACACTAAATACTTGGTACTCCCT 59.501 38.462 0.00 0.00 0.00 4.20
7961 8467 6.704310 TGAACACTAAATACTTGGTACTCCC 58.296 40.000 0.00 0.00 0.00 4.30
7962 8468 8.788325 AATGAACACTAAATACTTGGTACTCC 57.212 34.615 0.00 0.00 0.00 3.85
7963 8469 9.654663 AGAATGAACACTAAATACTTGGTACTC 57.345 33.333 0.00 0.00 0.00 2.59
7992 8498 8.475639 GTCTCCAGACCTACATTCATACTTTTA 58.524 37.037 0.00 0.00 39.07 1.52
7997 8503 5.737635 GCAGTCTCCAGACCTACATTCATAC 60.738 48.000 2.96 0.00 45.85 2.39
8049 8555 5.585047 CGAAGGGGAGTATTAAGAAAACCTG 59.415 44.000 0.00 0.00 0.00 4.00
8098 8604 8.178313 ACTGAAAACTATCGGGAAAGAAAAAT 57.822 30.769 0.00 0.00 0.00 1.82
8127 8633 7.911651 TCAATGGCATCCAGGTAAAAATTTAA 58.088 30.769 0.00 0.00 36.75 1.52
8130 8636 5.104817 CCTCAATGGCATCCAGGTAAAAATT 60.105 40.000 14.03 0.00 36.75 1.82
8131 8637 4.406649 CCTCAATGGCATCCAGGTAAAAAT 59.593 41.667 14.03 0.00 36.75 1.82
8142 8648 5.969423 TCATTTTCTTTCCTCAATGGCATC 58.031 37.500 0.00 0.00 35.26 3.91
8185 8691 5.576563 TTAATCAAGGTCTGGAGTTTCCA 57.423 39.130 0.00 0.00 45.98 3.53
8186 8692 6.127619 CCATTTAATCAAGGTCTGGAGTTTCC 60.128 42.308 0.00 0.00 36.96 3.13
8190 8696 4.263905 TGCCATTTAATCAAGGTCTGGAGT 60.264 41.667 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.