Multiple sequence alignment - TraesCS6A01G113600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G113600 chr6A 100.000 4107 0 0 1 4107 83598534 83602640 0.000000e+00 7585.0
1 TraesCS6A01G113600 chr6A 83.721 2236 295 45 892 3065 83644443 83646671 0.000000e+00 2049.0
2 TraesCS6A01G113600 chr6A 84.039 1748 195 36 766 2461 83434828 83436543 0.000000e+00 1605.0
3 TraesCS6A01G113600 chr6A 79.854 1782 282 44 999 2755 81191957 81190228 0.000000e+00 1230.0
4 TraesCS6A01G113600 chr6A 83.818 791 114 10 2324 3107 83436988 83437771 0.000000e+00 739.0
5 TraesCS6A01G113600 chr6A 87.473 463 33 7 3245 3682 83439575 83440037 1.020000e-140 510.0
6 TraesCS6A01G113600 chr6A 93.600 125 5 3 3715 3838 83440042 83440164 2.520000e-42 183.0
7 TraesCS6A01G113600 chr6A 90.909 55 5 0 564 618 495470362 495470308 1.580000e-09 75.0
8 TraesCS6A01G113600 chr6B 93.809 2326 96 22 589 2900 140333883 140331592 0.000000e+00 3454.0
9 TraesCS6A01G113600 chr6B 86.452 1491 158 19 966 2424 140367296 140365818 0.000000e+00 1594.0
10 TraesCS6A01G113600 chr6B 84.786 1492 170 26 966 2424 139883750 139885217 0.000000e+00 1445.0
11 TraesCS6A01G113600 chr6B 84.604 1364 172 25 903 2239 140097511 140096159 0.000000e+00 1321.0
12 TraesCS6A01G113600 chr6B 89.219 640 45 7 3159 3775 140331341 140330703 0.000000e+00 778.0
13 TraesCS6A01G113600 chr6B 83.528 771 117 6 2341 3107 139885563 139886327 0.000000e+00 712.0
14 TraesCS6A01G113600 chr6B 94.521 438 23 1 441 877 140338946 140338509 0.000000e+00 675.0
15 TraesCS6A01G113600 chr6B 91.196 443 23 3 1 443 22894959 22895385 4.570000e-164 588.0
16 TraesCS6A01G113600 chr6B 86.907 443 29 10 3275 3706 140363371 140362947 1.730000e-128 470.0
17 TraesCS6A01G113600 chr6B 93.960 149 7 2 3691 3838 140362930 140362783 1.490000e-54 224.0
18 TraesCS6A01G113600 chr6D 95.155 2126 81 4 785 2900 65343622 65341509 0.000000e+00 3336.0
19 TraesCS6A01G113600 chr6D 85.542 1494 167 20 966 2424 65361094 65359615 0.000000e+00 1517.0
20 TraesCS6A01G113600 chr6D 84.584 1479 201 20 892 2345 65095256 65093780 0.000000e+00 1443.0
21 TraesCS6A01G113600 chr6D 84.902 1477 166 24 966 2409 65051637 65053089 0.000000e+00 1439.0
22 TraesCS6A01G113600 chr6D 78.849 1773 280 47 1013 2755 63817273 63815566 0.000000e+00 1109.0
23 TraesCS6A01G113600 chr6D 79.829 1289 220 33 999 2265 63926580 63925310 0.000000e+00 904.0
24 TraesCS6A01G113600 chr6D 84.436 771 110 6 2341 3107 65359249 65358485 0.000000e+00 750.0
25 TraesCS6A01G113600 chr6D 83.745 769 115 6 2343 3107 65053453 65054215 0.000000e+00 719.0
26 TraesCS6A01G113600 chr6D 91.009 456 24 8 1 439 20597670 20598125 2.110000e-167 599.0
27 TraesCS6A01G113600 chr6D 95.932 295 12 0 2813 3107 65341677 65341383 2.870000e-131 479.0
28 TraesCS6A01G113600 chr6D 89.071 366 21 6 441 802 65343988 65343638 1.750000e-118 436.0
29 TraesCS6A01G113600 chr6D 86.162 383 28 11 3277 3637 65341177 65340798 1.380000e-104 390.0
30 TraesCS6A01G113600 chr5B 82.005 1267 202 17 1846 3107 261675967 261674722 0.000000e+00 1053.0
31 TraesCS6A01G113600 chr5B 89.912 456 30 3 1 440 669433762 669434217 1.280000e-159 573.0
32 TraesCS6A01G113600 chr5B 94.030 201 12 0 240 440 662845715 662845515 5.160000e-79 305.0
33 TraesCS6A01G113600 chrUn 83.658 771 116 6 2341 3107 388715107 388714343 0.000000e+00 717.0
34 TraesCS6A01G113600 chr7B 90.175 458 28 8 1 441 333405570 333406027 7.650000e-162 580.0
35 TraesCS6A01G113600 chr7B 90.909 55 5 0 564 618 246613559 246613613 1.580000e-09 75.0
36 TraesCS6A01G113600 chr3A 89.956 458 26 5 1 440 74770258 74770713 1.280000e-159 573.0
37 TraesCS6A01G113600 chr3A 90.909 55 5 0 564 618 141974072 141974126 1.580000e-09 75.0
38 TraesCS6A01G113600 chr1D 89.633 463 27 8 1 442 381966924 381966462 1.660000e-158 569.0
39 TraesCS6A01G113600 chr1D 88.671 459 29 13 1 440 414250176 414250630 4.670000e-149 538.0
40 TraesCS6A01G113600 chr3D 89.738 458 27 8 1 442 101671984 101672437 5.960000e-158 568.0
41 TraesCS6A01G113600 chr5D 89.107 459 25 5 1 440 242234712 242234260 7.760000e-152 547.0
42 TraesCS6A01G113600 chr7D 91.250 400 25 5 44 440 163562033 163562425 1.680000e-148 536.0
43 TraesCS6A01G113600 chr1A 87.773 458 27 8 1 440 521225078 521224632 3.660000e-140 508.0
44 TraesCS6A01G113600 chr5A 88.443 424 27 4 1 406 703364936 703365355 3.690000e-135 492.0
45 TraesCS6A01G113600 chr4A 87.082 449 39 15 1 442 707932895 707932459 1.330000e-134 490.0
46 TraesCS6A01G113600 chr4A 88.406 69 8 0 550 618 602098337 602098405 2.630000e-12 84.2
47 TraesCS6A01G113600 chr2D 88.406 69 7 1 550 618 610864943 610865010 9.460000e-12 82.4
48 TraesCS6A01G113600 chr2A 90.909 55 5 0 564 618 55562700 55562646 1.580000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G113600 chr6A 83598534 83602640 4106 False 7585.000000 7585 100.000000 1 4107 1 chr6A.!!$F1 4106
1 TraesCS6A01G113600 chr6A 83644443 83646671 2228 False 2049.000000 2049 83.721000 892 3065 1 chr6A.!!$F2 2173
2 TraesCS6A01G113600 chr6A 81190228 81191957 1729 True 1230.000000 1230 79.854000 999 2755 1 chr6A.!!$R1 1756
3 TraesCS6A01G113600 chr6A 83434828 83440164 5336 False 759.250000 1605 87.232500 766 3838 4 chr6A.!!$F3 3072
4 TraesCS6A01G113600 chr6B 140330703 140333883 3180 True 2116.000000 3454 91.514000 589 3775 2 chr6B.!!$R3 3186
5 TraesCS6A01G113600 chr6B 140096159 140097511 1352 True 1321.000000 1321 84.604000 903 2239 1 chr6B.!!$R1 1336
6 TraesCS6A01G113600 chr6B 139883750 139886327 2577 False 1078.500000 1445 84.157000 966 3107 2 chr6B.!!$F2 2141
7 TraesCS6A01G113600 chr6B 140362783 140367296 4513 True 762.666667 1594 89.106333 966 3838 3 chr6B.!!$R4 2872
8 TraesCS6A01G113600 chr6D 65093780 65095256 1476 True 1443.000000 1443 84.584000 892 2345 1 chr6D.!!$R3 1453
9 TraesCS6A01G113600 chr6D 65340798 65343988 3190 True 1160.250000 3336 91.580000 441 3637 4 chr6D.!!$R4 3196
10 TraesCS6A01G113600 chr6D 65358485 65361094 2609 True 1133.500000 1517 84.989000 966 3107 2 chr6D.!!$R5 2141
11 TraesCS6A01G113600 chr6D 63815566 63817273 1707 True 1109.000000 1109 78.849000 1013 2755 1 chr6D.!!$R1 1742
12 TraesCS6A01G113600 chr6D 65051637 65054215 2578 False 1079.000000 1439 84.323500 966 3107 2 chr6D.!!$F2 2141
13 TraesCS6A01G113600 chr6D 63925310 63926580 1270 True 904.000000 904 79.829000 999 2265 1 chr6D.!!$R2 1266
14 TraesCS6A01G113600 chr5B 261674722 261675967 1245 True 1053.000000 1053 82.005000 1846 3107 1 chr5B.!!$R1 1261
15 TraesCS6A01G113600 chrUn 388714343 388715107 764 True 717.000000 717 83.658000 2341 3107 1 chrUn.!!$R1 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
298 299 0.036952 ATCGTGAGTGGGAGTTGCTG 60.037 55.0 0.00 0.0 0.00 4.41 F
335 336 0.522180 AGAAGACGTGAGCGAATCGT 59.478 50.0 4.07 0.0 42.00 3.73 F
894 947 0.835971 TAGTCAAGCCACAGAGCCCA 60.836 55.0 0.00 0.0 0.00 5.36 F
2611 4917 0.098376 GCTCTTGCGATTGCCTTGAG 59.902 55.0 1.50 8.3 41.78 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 1895 2.537560 GCAAGGCATCGACATCCCG 61.538 63.158 0.00 0.00 0.00 5.14 R
1895 2023 4.693095 TCGACGATGATTTCATTGAAACCA 59.307 37.500 13.80 11.22 39.56 3.67 R
2772 5159 0.169672 CGCATTGCCCTCAACAGAAG 59.830 55.000 2.41 0.00 34.60 2.85 R
3872 8100 0.179009 GCTTCCATAGCCCTGATGCA 60.179 55.000 0.00 0.00 44.48 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.932663 AATGGCGTTGACTGACTGG 58.067 52.632 0.00 0.00 0.00 4.00
19 20 0.108585 AATGGCGTTGACTGACTGGT 59.891 50.000 0.00 0.00 0.00 4.00
20 21 0.603707 ATGGCGTTGACTGACTGGTG 60.604 55.000 0.00 0.00 0.00 4.17
21 22 1.961277 GGCGTTGACTGACTGGTGG 60.961 63.158 0.00 0.00 0.00 4.61
22 23 1.227556 GCGTTGACTGACTGGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
23 24 1.222115 GCGTTGACTGACTGGTGGTC 61.222 60.000 0.00 0.00 44.70 4.02
41 42 3.115892 GTCGCCGACGCAATTCCA 61.116 61.111 0.00 0.00 39.84 3.53
42 43 2.125310 TCGCCGACGCAATTCCAT 60.125 55.556 0.00 0.00 39.84 3.41
43 44 2.023181 CGCCGACGCAATTCCATG 59.977 61.111 0.00 0.00 34.03 3.66
44 45 2.278142 GCCGACGCAATTCCATGC 60.278 61.111 0.00 0.00 42.94 4.06
45 46 3.050166 GCCGACGCAATTCCATGCA 62.050 57.895 0.00 0.00 46.76 3.96
46 47 1.063006 CCGACGCAATTCCATGCAG 59.937 57.895 0.00 0.00 46.76 4.41
47 48 1.584483 CGACGCAATTCCATGCAGC 60.584 57.895 0.00 0.00 46.76 5.25
50 51 4.704007 GCAATTCCATGCAGCGAG 57.296 55.556 0.00 0.00 45.70 5.03
51 52 1.588139 GCAATTCCATGCAGCGAGC 60.588 57.895 0.00 0.00 45.70 5.03
79 80 2.027751 GGCGACGGAGCTACATCC 59.972 66.667 0.00 0.00 37.29 3.51
96 97 2.342648 CGGAGGGGCGCTATAACC 59.657 66.667 7.64 0.00 0.00 2.85
97 98 2.342648 GGAGGGGCGCTATAACCG 59.657 66.667 7.64 0.00 0.00 4.44
98 99 2.505167 GGAGGGGCGCTATAACCGT 61.505 63.158 7.64 0.00 0.00 4.83
99 100 1.006454 GAGGGGCGCTATAACCGTC 60.006 63.158 7.64 6.99 32.81 4.79
100 101 2.355481 GGGGCGCTATAACCGTCG 60.355 66.667 7.64 0.00 0.00 5.12
101 102 3.034343 GGGCGCTATAACCGTCGC 61.034 66.667 7.64 0.00 45.99 5.19
103 104 3.392440 GCGCTATAACCGTCGCCG 61.392 66.667 0.00 0.00 41.53 6.46
144 145 2.561733 CAGCTGTTGCATGGATTGAG 57.438 50.000 5.25 0.00 42.74 3.02
145 146 1.134367 CAGCTGTTGCATGGATTGAGG 59.866 52.381 5.25 0.00 42.74 3.86
146 147 1.180029 GCTGTTGCATGGATTGAGGT 58.820 50.000 0.00 0.00 39.41 3.85
147 148 2.025981 AGCTGTTGCATGGATTGAGGTA 60.026 45.455 0.00 0.00 42.74 3.08
148 149 2.357009 GCTGTTGCATGGATTGAGGTAG 59.643 50.000 0.00 0.00 39.41 3.18
149 150 3.614092 CTGTTGCATGGATTGAGGTAGT 58.386 45.455 0.00 0.00 0.00 2.73
150 151 4.012374 CTGTTGCATGGATTGAGGTAGTT 58.988 43.478 0.00 0.00 0.00 2.24
151 152 4.406456 TGTTGCATGGATTGAGGTAGTTT 58.594 39.130 0.00 0.00 0.00 2.66
152 153 4.832266 TGTTGCATGGATTGAGGTAGTTTT 59.168 37.500 0.00 0.00 0.00 2.43
153 154 5.304101 TGTTGCATGGATTGAGGTAGTTTTT 59.696 36.000 0.00 0.00 0.00 1.94
154 155 5.389859 TGCATGGATTGAGGTAGTTTTTG 57.610 39.130 0.00 0.00 0.00 2.44
155 156 5.076182 TGCATGGATTGAGGTAGTTTTTGA 58.924 37.500 0.00 0.00 0.00 2.69
156 157 5.048083 TGCATGGATTGAGGTAGTTTTTGAC 60.048 40.000 0.00 0.00 0.00 3.18
157 158 5.183904 GCATGGATTGAGGTAGTTTTTGACT 59.816 40.000 0.00 0.00 42.55 3.41
158 159 6.374333 GCATGGATTGAGGTAGTTTTTGACTA 59.626 38.462 0.00 0.00 39.86 2.59
171 172 6.668323 AGTTTTTGACTACATCCATTCAACG 58.332 36.000 0.00 0.00 36.65 4.10
172 173 6.262273 AGTTTTTGACTACATCCATTCAACGT 59.738 34.615 0.00 0.00 36.65 3.99
173 174 5.856126 TTTGACTACATCCATTCAACGTC 57.144 39.130 0.00 0.00 0.00 4.34
174 175 3.507786 TGACTACATCCATTCAACGTCG 58.492 45.455 0.00 0.00 0.00 5.12
175 176 3.191791 TGACTACATCCATTCAACGTCGA 59.808 43.478 0.00 0.00 0.00 4.20
176 177 3.770666 ACTACATCCATTCAACGTCGAG 58.229 45.455 0.00 0.00 0.00 4.04
177 178 3.442625 ACTACATCCATTCAACGTCGAGA 59.557 43.478 0.00 0.00 0.00 4.04
178 179 3.313012 ACATCCATTCAACGTCGAGAA 57.687 42.857 0.00 3.17 0.00 2.87
179 180 2.993899 ACATCCATTCAACGTCGAGAAC 59.006 45.455 0.00 0.00 0.00 3.01
211 212 3.756727 GGGACCGACCACGAGGAC 61.757 72.222 5.68 0.00 42.66 3.85
217 218 4.436998 GACCACGAGGACGGCCAG 62.437 72.222 11.69 5.43 44.46 4.85
232 233 4.087892 CAGCGAGGGTGGGGACAG 62.088 72.222 0.00 0.00 44.46 3.51
233 234 4.316823 AGCGAGGGTGGGGACAGA 62.317 66.667 0.00 0.00 44.46 3.41
234 235 4.083862 GCGAGGGTGGGGACAGAC 62.084 72.222 0.00 0.00 44.46 3.51
235 236 3.391382 CGAGGGTGGGGACAGACC 61.391 72.222 0.00 0.00 44.46 3.85
236 237 2.203938 GAGGGTGGGGACAGACCA 60.204 66.667 0.00 0.00 44.46 4.02
242 243 3.900888 GGGGACAGACCACAAGGA 58.099 61.111 0.00 0.00 42.69 3.36
243 244 1.375326 GGGGACAGACCACAAGGAC 59.625 63.158 0.00 0.00 42.69 3.85
244 245 1.004918 GGGACAGACCACAAGGACG 60.005 63.158 0.00 0.00 41.20 4.79
245 246 1.004918 GGACAGACCACAAGGACGG 60.005 63.158 0.00 0.00 38.69 4.79
246 247 1.668151 GACAGACCACAAGGACGGC 60.668 63.158 0.00 0.00 38.69 5.68
247 248 2.358737 CAGACCACAAGGACGGCC 60.359 66.667 0.00 0.00 38.69 6.13
248 249 2.847234 AGACCACAAGGACGGCCA 60.847 61.111 11.69 0.00 38.69 5.36
249 250 2.224159 AGACCACAAGGACGGCCAT 61.224 57.895 11.69 0.00 38.69 4.40
250 251 1.745489 GACCACAAGGACGGCCATC 60.745 63.158 11.69 0.00 38.69 3.51
251 252 2.819595 CCACAAGGACGGCCATCG 60.820 66.667 11.69 0.00 45.88 3.84
252 253 2.819595 CACAAGGACGGCCATCGG 60.820 66.667 11.69 0.00 44.45 4.18
253 254 3.000819 ACAAGGACGGCCATCGGA 61.001 61.111 11.69 0.00 44.45 4.55
254 255 2.202932 CAAGGACGGCCATCGGAG 60.203 66.667 11.69 0.00 44.45 4.63
255 256 3.470888 AAGGACGGCCATCGGAGG 61.471 66.667 11.69 0.00 44.45 4.30
261 262 3.866582 GGCCATCGGAGGGGACTG 61.867 72.222 11.11 0.00 44.43 3.51
262 263 4.554036 GCCATCGGAGGGGACTGC 62.554 72.222 11.11 0.00 46.81 4.40
293 294 2.889200 GAGGATCGTGAGTGGGAGT 58.111 57.895 0.00 0.00 0.00 3.85
294 295 1.187087 GAGGATCGTGAGTGGGAGTT 58.813 55.000 0.00 0.00 0.00 3.01
295 296 0.898320 AGGATCGTGAGTGGGAGTTG 59.102 55.000 0.00 0.00 0.00 3.16
296 297 0.741221 GGATCGTGAGTGGGAGTTGC 60.741 60.000 0.00 0.00 0.00 4.17
297 298 0.247736 GATCGTGAGTGGGAGTTGCT 59.752 55.000 0.00 0.00 0.00 3.91
298 299 0.036952 ATCGTGAGTGGGAGTTGCTG 60.037 55.000 0.00 0.00 0.00 4.41
299 300 1.112916 TCGTGAGTGGGAGTTGCTGA 61.113 55.000 0.00 0.00 0.00 4.26
300 301 0.036952 CGTGAGTGGGAGTTGCTGAT 60.037 55.000 0.00 0.00 0.00 2.90
301 302 1.731720 GTGAGTGGGAGTTGCTGATC 58.268 55.000 0.00 0.00 0.00 2.92
302 303 0.615331 TGAGTGGGAGTTGCTGATCC 59.385 55.000 0.00 0.00 34.64 3.36
303 304 0.615331 GAGTGGGAGTTGCTGATCCA 59.385 55.000 4.43 0.00 37.33 3.41
304 305 0.617413 AGTGGGAGTTGCTGATCCAG 59.383 55.000 4.43 0.00 37.33 3.86
315 316 1.493861 CTGATCCAGCCTGAGGAAGA 58.506 55.000 0.65 0.00 38.93 2.87
316 317 1.836166 CTGATCCAGCCTGAGGAAGAA 59.164 52.381 0.65 0.00 38.93 2.52
317 318 1.836166 TGATCCAGCCTGAGGAAGAAG 59.164 52.381 0.65 0.00 38.93 2.85
318 319 2.114616 GATCCAGCCTGAGGAAGAAGA 58.885 52.381 0.65 0.00 38.93 2.87
319 320 2.030027 TCCAGCCTGAGGAAGAAGAA 57.970 50.000 0.65 0.00 30.71 2.52
320 321 1.905215 TCCAGCCTGAGGAAGAAGAAG 59.095 52.381 0.65 0.00 30.71 2.85
321 322 1.905215 CCAGCCTGAGGAAGAAGAAGA 59.095 52.381 0.65 0.00 0.00 2.87
322 323 2.354604 CCAGCCTGAGGAAGAAGAAGAC 60.355 54.545 0.65 0.00 0.00 3.01
323 324 1.548269 AGCCTGAGGAAGAAGAAGACG 59.452 52.381 0.65 0.00 0.00 4.18
324 325 1.273886 GCCTGAGGAAGAAGAAGACGT 59.726 52.381 0.65 0.00 0.00 4.34
325 326 2.928731 GCCTGAGGAAGAAGAAGACGTG 60.929 54.545 0.65 0.00 0.00 4.49
326 327 2.558795 CCTGAGGAAGAAGAAGACGTGA 59.441 50.000 0.00 0.00 0.00 4.35
327 328 3.366883 CCTGAGGAAGAAGAAGACGTGAG 60.367 52.174 0.00 0.00 0.00 3.51
328 329 2.029828 TGAGGAAGAAGAAGACGTGAGC 60.030 50.000 0.00 0.00 0.00 4.26
329 330 1.068194 AGGAAGAAGAAGACGTGAGCG 60.068 52.381 0.00 0.00 44.93 5.03
330 331 1.068472 GGAAGAAGAAGACGTGAGCGA 60.068 52.381 0.00 0.00 42.00 4.93
331 332 2.607282 GGAAGAAGAAGACGTGAGCGAA 60.607 50.000 0.00 0.00 42.00 4.70
332 333 3.246619 GAAGAAGAAGACGTGAGCGAAT 58.753 45.455 0.00 0.00 42.00 3.34
333 334 2.869897 AGAAGAAGACGTGAGCGAATC 58.130 47.619 0.00 0.00 42.00 2.52
334 335 1.579808 GAAGAAGACGTGAGCGAATCG 59.420 52.381 0.00 0.00 42.00 3.34
335 336 0.522180 AGAAGACGTGAGCGAATCGT 59.478 50.000 4.07 0.00 42.00 3.73
336 337 1.068472 AGAAGACGTGAGCGAATCGTT 60.068 47.619 4.07 0.00 42.00 3.85
337 338 1.719780 GAAGACGTGAGCGAATCGTTT 59.280 47.619 4.07 0.00 42.00 3.60
338 339 1.779569 AGACGTGAGCGAATCGTTTT 58.220 45.000 4.07 0.00 42.00 2.43
339 340 2.132762 AGACGTGAGCGAATCGTTTTT 58.867 42.857 4.07 0.00 42.00 1.94
340 341 2.155155 AGACGTGAGCGAATCGTTTTTC 59.845 45.455 4.07 0.00 42.00 2.29
341 342 2.132762 ACGTGAGCGAATCGTTTTTCT 58.867 42.857 4.07 0.00 42.00 2.52
342 343 2.542595 ACGTGAGCGAATCGTTTTTCTT 59.457 40.909 4.07 0.00 42.00 2.52
343 344 3.001939 ACGTGAGCGAATCGTTTTTCTTT 59.998 39.130 4.07 0.00 42.00 2.52
344 345 3.966218 CGTGAGCGAATCGTTTTTCTTTT 59.034 39.130 4.07 0.00 41.33 2.27
345 346 4.436523 CGTGAGCGAATCGTTTTTCTTTTT 59.563 37.500 4.07 0.00 41.33 1.94
363 364 0.903942 TTTTGCCCAGATCCATTGGC 59.096 50.000 0.00 5.66 44.27 4.52
364 365 0.977108 TTTGCCCAGATCCATTGGCC 60.977 55.000 0.00 0.00 43.35 5.36
365 366 2.165643 TTGCCCAGATCCATTGGCCA 62.166 55.000 0.00 0.00 43.35 5.36
366 367 1.381599 GCCCAGATCCATTGGCCAA 60.382 57.895 23.00 23.00 37.94 4.52
367 368 1.397390 GCCCAGATCCATTGGCCAAG 61.397 60.000 24.94 15.21 37.94 3.61
368 369 1.397390 CCCAGATCCATTGGCCAAGC 61.397 60.000 24.94 2.77 34.26 4.01
369 370 1.731433 CCAGATCCATTGGCCAAGCG 61.731 60.000 24.94 16.88 0.00 4.68
370 371 1.454479 AGATCCATTGGCCAAGCGG 60.454 57.895 24.94 24.78 0.00 5.52
385 386 4.520846 CGGCTCGCATCAAACGGC 62.521 66.667 0.00 0.00 0.00 5.68
386 387 3.127533 GGCTCGCATCAAACGGCT 61.128 61.111 0.00 0.00 0.00 5.52
387 388 2.099062 GCTCGCATCAAACGGCTG 59.901 61.111 0.00 0.00 0.00 4.85
388 389 2.787249 CTCGCATCAAACGGCTGG 59.213 61.111 0.00 0.00 0.00 4.85
389 390 2.745884 TCGCATCAAACGGCTGGG 60.746 61.111 0.00 0.00 0.00 4.45
390 391 3.814268 CGCATCAAACGGCTGGGG 61.814 66.667 0.00 0.00 0.00 4.96
391 392 4.133796 GCATCAAACGGCTGGGGC 62.134 66.667 0.00 0.00 37.82 5.80
408 409 4.692475 CGGGACCGGCCGAAACTT 62.692 66.667 30.73 4.57 37.63 2.66
409 410 2.745100 GGGACCGGCCGAAACTTC 60.745 66.667 30.73 14.04 37.63 3.01
410 411 2.745100 GGACCGGCCGAAACTTCC 60.745 66.667 30.73 19.17 0.00 3.46
411 412 3.116531 GACCGGCCGAAACTTCCG 61.117 66.667 30.73 9.82 42.58 4.30
417 418 4.692475 CCGAAACTTCCGGCCGGT 62.692 66.667 41.57 24.62 40.54 5.28
418 419 3.419759 CGAAACTTCCGGCCGGTG 61.420 66.667 41.57 34.22 36.47 4.94
419 420 3.733960 GAAACTTCCGGCCGGTGC 61.734 66.667 41.57 19.90 36.47 5.01
452 453 1.654105 CGTTCGCCTTAGTGTAAGCAG 59.346 52.381 0.00 0.00 34.46 4.24
464 465 3.317993 AGTGTAAGCAGCGATTGGTTTTT 59.682 39.130 9.53 0.00 44.75 1.94
493 494 2.229792 TGTCCTGCAGGTGATTTGAAC 58.770 47.619 31.58 19.70 36.34 3.18
636 652 9.462606 AATAAAAACTCCCTTTCTATAGTGTGG 57.537 33.333 0.00 0.76 0.00 4.17
637 653 4.489306 AACTCCCTTTCTATAGTGTGGC 57.511 45.455 0.00 0.00 0.00 5.01
638 654 3.725634 ACTCCCTTTCTATAGTGTGGCT 58.274 45.455 0.00 0.00 0.00 4.75
639 655 4.104831 ACTCCCTTTCTATAGTGTGGCTT 58.895 43.478 0.00 0.00 0.00 4.35
640 656 4.536489 ACTCCCTTTCTATAGTGTGGCTTT 59.464 41.667 0.00 0.00 0.00 3.51
641 657 5.014228 ACTCCCTTTCTATAGTGTGGCTTTT 59.986 40.000 0.00 0.00 0.00 2.27
851 904 7.924940 TGAATTTTAAATTTTGGTCCACAAGC 58.075 30.769 4.32 0.00 40.82 4.01
852 905 7.772757 TGAATTTTAAATTTTGGTCCACAAGCT 59.227 29.630 4.32 0.00 40.82 3.74
853 906 7.728847 ATTTTAAATTTTGGTCCACAAGCTC 57.271 32.000 0.00 0.00 40.82 4.09
854 907 5.860941 TTAAATTTTGGTCCACAAGCTCA 57.139 34.783 0.00 0.00 40.82 4.26
855 908 3.733443 AATTTTGGTCCACAAGCTCAC 57.267 42.857 0.00 0.00 40.82 3.51
856 909 2.136298 TTTTGGTCCACAAGCTCACA 57.864 45.000 0.00 0.00 40.82 3.58
857 910 1.388547 TTTGGTCCACAAGCTCACAC 58.611 50.000 0.00 0.00 40.82 3.82
865 918 2.223340 CCACAAGCTCACACTTCACAAC 60.223 50.000 0.00 0.00 0.00 3.32
881 934 5.079689 TCACAACTCACAACACTAGTCAA 57.920 39.130 0.00 0.00 0.00 3.18
882 935 5.109210 TCACAACTCACAACACTAGTCAAG 58.891 41.667 0.00 0.00 0.00 3.02
894 947 0.835971 TAGTCAAGCCACAGAGCCCA 60.836 55.000 0.00 0.00 0.00 5.36
1038 1119 3.435169 GGGGAGGAGAAGAAGTGTTTGTT 60.435 47.826 0.00 0.00 0.00 2.83
1149 1244 3.607299 TCCCTCCCTTCGTCCCCA 61.607 66.667 0.00 0.00 0.00 4.96
1767 1895 1.403814 TCACTCCATCATCGAGGACC 58.596 55.000 0.00 0.00 0.00 4.46
1895 2023 3.736720 CGTCATGATGGAATGGAGATGT 58.263 45.455 7.06 0.00 0.00 3.06
2064 2195 1.302511 GGTGGCGTTGTCATCAGGT 60.303 57.895 0.00 0.00 0.00 4.00
2415 4604 6.744537 GCTTATTCAAGTGCTAGTTGTTCATG 59.255 38.462 0.00 0.00 34.00 3.07
2590 4896 1.349357 GCTGAGTTCTGGAAGTCCCTT 59.651 52.381 13.53 0.00 39.42 3.95
2611 4917 0.098376 GCTCTTGCGATTGCCTTGAG 59.902 55.000 1.50 8.30 41.78 3.02
2717 5023 1.376037 GTGCTTAAGACGCTGGGCT 60.376 57.895 6.67 0.00 0.00 5.19
2760 5147 2.768769 GGTAGTGGAGGGAGGCCC 60.769 72.222 0.00 0.00 45.90 5.80
2769 5156 3.568578 GGGAGGCCCTATGTCAGG 58.431 66.667 0.00 0.00 45.07 3.86
2770 5157 1.384643 GGGAGGCCCTATGTCAGGT 60.385 63.158 0.00 0.00 43.80 4.00
2771 5158 0.988678 GGGAGGCCCTATGTCAGGTT 60.989 60.000 0.00 0.00 43.80 3.50
2772 5159 0.470341 GGAGGCCCTATGTCAGGTTC 59.530 60.000 0.00 0.00 43.80 3.62
2773 5160 1.501582 GAGGCCCTATGTCAGGTTCT 58.498 55.000 0.00 0.00 43.80 3.01
2774 5161 1.840635 GAGGCCCTATGTCAGGTTCTT 59.159 52.381 0.00 0.00 43.80 2.52
2775 5162 1.840635 AGGCCCTATGTCAGGTTCTTC 59.159 52.381 0.00 0.00 43.80 2.87
2776 5163 1.840635 GGCCCTATGTCAGGTTCTTCT 59.159 52.381 0.00 0.00 43.80 2.85
2777 5164 2.420687 GGCCCTATGTCAGGTTCTTCTG 60.421 54.545 0.00 0.00 43.80 3.02
2778 5165 2.237392 GCCCTATGTCAGGTTCTTCTGT 59.763 50.000 0.00 0.00 43.80 3.41
2779 5166 3.307762 GCCCTATGTCAGGTTCTTCTGTT 60.308 47.826 0.00 0.00 43.80 3.16
2780 5167 4.256920 CCCTATGTCAGGTTCTTCTGTTG 58.743 47.826 0.00 0.00 43.80 3.33
2781 5168 4.020218 CCCTATGTCAGGTTCTTCTGTTGA 60.020 45.833 0.00 0.00 43.80 3.18
2782 5169 5.174395 CCTATGTCAGGTTCTTCTGTTGAG 58.826 45.833 0.00 0.00 39.91 3.02
2783 5170 3.475566 TGTCAGGTTCTTCTGTTGAGG 57.524 47.619 0.00 0.00 36.25 3.86
2784 5171 2.104792 TGTCAGGTTCTTCTGTTGAGGG 59.895 50.000 0.00 0.00 36.25 4.30
2785 5172 1.072331 TCAGGTTCTTCTGTTGAGGGC 59.928 52.381 0.00 0.00 36.25 5.19
2786 5173 1.140312 AGGTTCTTCTGTTGAGGGCA 58.860 50.000 0.00 0.00 0.00 5.36
2787 5174 1.494721 AGGTTCTTCTGTTGAGGGCAA 59.505 47.619 0.00 0.00 0.00 4.52
2788 5175 2.108952 AGGTTCTTCTGTTGAGGGCAAT 59.891 45.455 0.00 0.00 36.22 3.56
2789 5176 2.229784 GGTTCTTCTGTTGAGGGCAATG 59.770 50.000 0.00 0.00 36.22 2.82
2790 5177 1.538047 TCTTCTGTTGAGGGCAATGC 58.462 50.000 0.00 0.00 36.22 3.56
2791 5178 0.169672 CTTCTGTTGAGGGCAATGCG 59.830 55.000 0.00 0.00 36.22 4.73
2792 5179 1.865788 TTCTGTTGAGGGCAATGCGC 61.866 55.000 14.75 14.75 41.91 6.09
2801 5188 2.431260 GCAATGCGCCAACAGGTG 60.431 61.111 4.18 0.00 35.99 4.00
2811 5198 2.334307 CAACAGGTGGAAGCAGTGG 58.666 57.895 0.00 0.00 33.15 4.00
2812 5199 1.529244 AACAGGTGGAAGCAGTGGC 60.529 57.895 0.00 0.00 33.15 5.01
2813 5200 2.113774 CAGGTGGAAGCAGTGGCA 59.886 61.111 0.00 0.00 44.61 4.92
2814 5201 1.970114 CAGGTGGAAGCAGTGGCAG 60.970 63.158 0.00 0.00 44.61 4.85
2815 5202 2.113986 GGTGGAAGCAGTGGCAGT 59.886 61.111 0.00 0.00 44.61 4.40
2816 5203 2.263741 GGTGGAAGCAGTGGCAGTG 61.264 63.158 18.01 18.01 44.61 3.66
2817 5204 1.227943 GTGGAAGCAGTGGCAGTGA 60.228 57.895 25.96 1.22 44.61 3.41
2818 5205 0.607489 GTGGAAGCAGTGGCAGTGAT 60.607 55.000 25.96 17.54 44.61 3.06
2819 5206 0.607217 TGGAAGCAGTGGCAGTGATG 60.607 55.000 25.96 5.57 44.61 3.07
2820 5207 0.321919 GGAAGCAGTGGCAGTGATGA 60.322 55.000 25.96 0.00 44.61 2.92
2821 5208 1.681166 GGAAGCAGTGGCAGTGATGAT 60.681 52.381 25.96 5.41 44.61 2.45
2822 5209 1.400846 GAAGCAGTGGCAGTGATGATG 59.599 52.381 25.96 0.00 44.61 3.07
2823 5210 0.327259 AGCAGTGGCAGTGATGATGT 59.673 50.000 25.96 0.00 44.61 3.06
2824 5211 0.450583 GCAGTGGCAGTGATGATGTG 59.549 55.000 25.96 0.00 40.72 3.21
2825 5212 1.092348 CAGTGGCAGTGATGATGTGG 58.908 55.000 17.46 0.00 0.00 4.17
2826 5213 0.694771 AGTGGCAGTGATGATGTGGT 59.305 50.000 0.00 0.00 0.00 4.16
2827 5214 1.908619 AGTGGCAGTGATGATGTGGTA 59.091 47.619 0.00 0.00 0.00 3.25
2828 5215 2.305635 AGTGGCAGTGATGATGTGGTAA 59.694 45.455 0.00 0.00 0.00 2.85
2829 5216 3.054139 AGTGGCAGTGATGATGTGGTAAT 60.054 43.478 0.00 0.00 0.00 1.89
2830 5217 3.065786 GTGGCAGTGATGATGTGGTAATG 59.934 47.826 0.00 0.00 0.00 1.90
2831 5218 2.620115 GGCAGTGATGATGTGGTAATGG 59.380 50.000 0.00 0.00 0.00 3.16
2832 5219 3.544684 GCAGTGATGATGTGGTAATGGA 58.455 45.455 0.00 0.00 0.00 3.41
2833 5220 3.562973 GCAGTGATGATGTGGTAATGGAG 59.437 47.826 0.00 0.00 0.00 3.86
2834 5221 4.132336 CAGTGATGATGTGGTAATGGAGG 58.868 47.826 0.00 0.00 0.00 4.30
2835 5222 3.137176 AGTGATGATGTGGTAATGGAGGG 59.863 47.826 0.00 0.00 0.00 4.30
2836 5223 3.136443 GTGATGATGTGGTAATGGAGGGA 59.864 47.826 0.00 0.00 0.00 4.20
2837 5224 3.392285 TGATGATGTGGTAATGGAGGGAG 59.608 47.826 0.00 0.00 0.00 4.30
2838 5225 2.126882 TGATGTGGTAATGGAGGGAGG 58.873 52.381 0.00 0.00 0.00 4.30
2839 5226 0.846693 ATGTGGTAATGGAGGGAGGC 59.153 55.000 0.00 0.00 0.00 4.70
2840 5227 1.279025 TGTGGTAATGGAGGGAGGCC 61.279 60.000 0.00 0.00 0.00 5.19
2875 5262 0.037303 CTGGTGAGGGCAATGTGTCT 59.963 55.000 0.00 0.00 0.00 3.41
2897 5284 0.766674 AGGTGGAAGTGGTGGCAGTA 60.767 55.000 0.00 0.00 0.00 2.74
2910 5297 4.013728 GGTGGCAGTAATGATGTGGTAAA 58.986 43.478 0.00 0.00 0.00 2.01
2929 5316 3.450115 GAGGGAGGTCCGGTGTCG 61.450 72.222 0.00 0.00 41.52 4.35
3122 7262 3.319755 GCATGATTTTGTGGTGAACTGG 58.680 45.455 0.00 0.00 0.00 4.00
3123 7263 3.861886 GCATGATTTTGTGGTGAACTGGG 60.862 47.826 0.00 0.00 0.00 4.45
3124 7264 3.304911 TGATTTTGTGGTGAACTGGGA 57.695 42.857 0.00 0.00 0.00 4.37
3125 7265 3.636679 TGATTTTGTGGTGAACTGGGAA 58.363 40.909 0.00 0.00 0.00 3.97
3126 7266 3.636300 TGATTTTGTGGTGAACTGGGAAG 59.364 43.478 0.00 0.00 0.00 3.46
3127 7267 2.065899 TTTGTGGTGAACTGGGAAGG 57.934 50.000 0.00 0.00 0.00 3.46
3128 7268 0.923358 TTGTGGTGAACTGGGAAGGT 59.077 50.000 0.00 0.00 0.00 3.50
3129 7269 1.809133 TGTGGTGAACTGGGAAGGTA 58.191 50.000 0.00 0.00 0.00 3.08
3130 7270 2.128535 TGTGGTGAACTGGGAAGGTAA 58.871 47.619 0.00 0.00 0.00 2.85
3131 7271 2.105821 TGTGGTGAACTGGGAAGGTAAG 59.894 50.000 0.00 0.00 0.00 2.34
3132 7272 2.370849 GTGGTGAACTGGGAAGGTAAGA 59.629 50.000 0.00 0.00 0.00 2.10
3133 7273 3.050089 TGGTGAACTGGGAAGGTAAGAA 58.950 45.455 0.00 0.00 0.00 2.52
3134 7274 3.072476 TGGTGAACTGGGAAGGTAAGAAG 59.928 47.826 0.00 0.00 0.00 2.85
3135 7275 3.559384 GGTGAACTGGGAAGGTAAGAAGG 60.559 52.174 0.00 0.00 0.00 3.46
3136 7276 3.072622 GTGAACTGGGAAGGTAAGAAGGT 59.927 47.826 0.00 0.00 0.00 3.50
3137 7277 4.285260 GTGAACTGGGAAGGTAAGAAGGTA 59.715 45.833 0.00 0.00 0.00 3.08
3138 7278 4.909088 TGAACTGGGAAGGTAAGAAGGTAA 59.091 41.667 0.00 0.00 0.00 2.85
3139 7279 5.012768 TGAACTGGGAAGGTAAGAAGGTAAG 59.987 44.000 0.00 0.00 0.00 2.34
3140 7280 4.759953 ACTGGGAAGGTAAGAAGGTAAGA 58.240 43.478 0.00 0.00 0.00 2.10
3141 7281 5.160386 ACTGGGAAGGTAAGAAGGTAAGAA 58.840 41.667 0.00 0.00 0.00 2.52
3142 7282 5.791141 ACTGGGAAGGTAAGAAGGTAAGAAT 59.209 40.000 0.00 0.00 0.00 2.40
3143 7283 6.062258 TGGGAAGGTAAGAAGGTAAGAATG 57.938 41.667 0.00 0.00 0.00 2.67
3144 7284 5.788533 TGGGAAGGTAAGAAGGTAAGAATGA 59.211 40.000 0.00 0.00 0.00 2.57
3145 7285 6.070194 TGGGAAGGTAAGAAGGTAAGAATGAG 60.070 42.308 0.00 0.00 0.00 2.90
3146 7286 6.350103 GGAAGGTAAGAAGGTAAGAATGAGG 58.650 44.000 0.00 0.00 0.00 3.86
3147 7287 5.360649 AGGTAAGAAGGTAAGAATGAGGC 57.639 43.478 0.00 0.00 0.00 4.70
3148 7288 4.164413 AGGTAAGAAGGTAAGAATGAGGCC 59.836 45.833 0.00 0.00 0.00 5.19
3149 7289 4.080526 GGTAAGAAGGTAAGAATGAGGCCA 60.081 45.833 5.01 0.00 0.00 5.36
3150 7290 4.870021 AAGAAGGTAAGAATGAGGCCAT 57.130 40.909 5.01 0.00 33.66 4.40
3151 7291 4.162040 AGAAGGTAAGAATGAGGCCATG 57.838 45.455 5.01 0.00 32.36 3.66
3152 7292 3.782523 AGAAGGTAAGAATGAGGCCATGA 59.217 43.478 5.01 0.00 32.36 3.07
3153 7293 4.228210 AGAAGGTAAGAATGAGGCCATGAA 59.772 41.667 5.01 0.00 32.36 2.57
3154 7294 4.162040 AGGTAAGAATGAGGCCATGAAG 57.838 45.455 5.01 0.00 32.36 3.02
3155 7295 3.117738 AGGTAAGAATGAGGCCATGAAGG 60.118 47.826 5.01 0.00 41.84 3.46
3156 7296 3.372025 GGTAAGAATGAGGCCATGAAGGT 60.372 47.826 5.01 0.00 40.61 3.50
3157 7297 4.141482 GGTAAGAATGAGGCCATGAAGGTA 60.141 45.833 5.01 0.00 40.61 3.08
3203 7343 4.122776 AGGTCATTCATCGACATGTTAGC 58.877 43.478 0.00 0.00 34.97 3.09
3314 7478 5.193679 AGTACCCTGGCTGAATATTGTTTC 58.806 41.667 0.00 0.00 0.00 2.78
3320 7493 2.760092 GGCTGAATATTGTTTCTGGCCA 59.240 45.455 4.71 4.71 41.33 5.36
3400 7589 4.705991 TGCAATGCATTTTACTGATCCTCA 59.294 37.500 9.83 0.00 31.71 3.86
3436 7629 1.649664 ATTCAGCTGCGTGACAGATC 58.350 50.000 9.47 0.00 42.85 2.75
3467 7660 8.734386 AGATGAGGTATTTCTGTTTGTTGATTC 58.266 33.333 0.00 0.00 0.00 2.52
3486 7679 5.483937 TGATTCGGAAGCTATATATGGTGGT 59.516 40.000 7.57 0.00 0.00 4.16
3488 7681 5.909621 TCGGAAGCTATATATGGTGGTAC 57.090 43.478 0.00 0.00 0.00 3.34
3564 7757 3.367630 CCAAAATTATGCTTGCGTTCACC 59.632 43.478 0.00 0.00 0.00 4.02
3612 7813 7.753132 CGTGCTTGCCTGTCTAAAATTTTATTA 59.247 33.333 10.97 0.70 0.00 0.98
3644 7845 5.176741 AGACACTATAGTATACCCCCTCG 57.823 47.826 4.74 0.00 0.00 4.63
3655 7856 0.258774 ACCCCCTCGGATCCAAAATG 59.741 55.000 13.41 0.00 34.64 2.32
3658 7859 1.312815 CCCTCGGATCCAAAATGAGC 58.687 55.000 13.41 0.00 0.00 4.26
3772 8000 0.809385 TACGTACTGGAGCTCACAGC 59.191 55.000 23.94 12.86 42.84 4.40
3779 8007 0.321671 TGGAGCTCACAGCAACTACC 59.678 55.000 17.19 0.00 45.56 3.18
3784 8012 1.002366 CTCACAGCAACTACCGATGC 58.998 55.000 0.00 0.00 42.87 3.91
3792 8020 1.129251 CAACTACCGATGCAGCAACTG 59.871 52.381 1.53 0.00 34.12 3.16
3808 8036 0.253044 ACTGCCCATCTGCACGTATT 59.747 50.000 0.00 0.00 36.04 1.89
3809 8037 0.940126 CTGCCCATCTGCACGTATTC 59.060 55.000 0.00 0.00 36.04 1.75
3810 8038 0.251634 TGCCCATCTGCACGTATTCA 59.748 50.000 0.00 0.00 36.04 2.57
3812 8040 1.299541 CCCATCTGCACGTATTCACC 58.700 55.000 0.00 0.00 0.00 4.02
3813 8041 1.134401 CCCATCTGCACGTATTCACCT 60.134 52.381 0.00 0.00 0.00 4.00
3814 8042 1.935873 CCATCTGCACGTATTCACCTG 59.064 52.381 0.00 0.00 0.00 4.00
3838 8066 4.935808 AGCAGAATTAGGGTGTAAAGAACG 59.064 41.667 0.00 0.00 0.00 3.95
3839 8067 4.933400 GCAGAATTAGGGTGTAAAGAACGA 59.067 41.667 0.00 0.00 0.00 3.85
3840 8068 5.410439 GCAGAATTAGGGTGTAAAGAACGAA 59.590 40.000 0.00 0.00 0.00 3.85
3841 8069 6.402226 GCAGAATTAGGGTGTAAAGAACGAAG 60.402 42.308 0.00 0.00 0.00 3.79
3842 8070 5.642491 AGAATTAGGGTGTAAAGAACGAAGC 59.358 40.000 0.00 0.00 0.00 3.86
3843 8071 2.922740 AGGGTGTAAAGAACGAAGCA 57.077 45.000 0.00 0.00 0.00 3.91
3844 8072 2.490991 AGGGTGTAAAGAACGAAGCAC 58.509 47.619 0.00 0.00 0.00 4.40
3857 8085 2.202797 AGCACGTATCTGCTGCCG 60.203 61.111 0.00 0.00 46.10 5.69
3858 8086 2.509336 GCACGTATCTGCTGCCGT 60.509 61.111 0.00 0.00 34.06 5.68
3859 8087 3.388134 CACGTATCTGCTGCCGTG 58.612 61.111 12.50 12.50 43.70 4.94
3860 8088 2.167219 CACGTATCTGCTGCCGTGG 61.167 63.158 16.91 3.17 44.99 4.94
3861 8089 3.264897 CGTATCTGCTGCCGTGGC 61.265 66.667 3.30 3.30 42.35 5.01
3862 8090 2.897350 GTATCTGCTGCCGTGGCC 60.897 66.667 8.69 0.00 41.09 5.36
3863 8091 4.529219 TATCTGCTGCCGTGGCCG 62.529 66.667 8.69 2.75 41.09 6.13
3876 8104 4.778143 GGCCGACGAAGGGTGCAT 62.778 66.667 0.00 0.00 0.00 3.96
3877 8105 3.195698 GCCGACGAAGGGTGCATC 61.196 66.667 0.00 0.00 0.00 3.91
3878 8106 2.264480 CCGACGAAGGGTGCATCA 59.736 61.111 0.00 0.00 0.00 3.07
3879 8107 1.811266 CCGACGAAGGGTGCATCAG 60.811 63.158 0.00 0.00 0.00 2.90
3880 8108 1.811266 CGACGAAGGGTGCATCAGG 60.811 63.158 0.00 0.00 0.00 3.86
3881 8109 1.450312 GACGAAGGGTGCATCAGGG 60.450 63.158 0.00 0.00 0.00 4.45
3882 8110 2.825836 CGAAGGGTGCATCAGGGC 60.826 66.667 0.00 0.00 0.00 5.19
3883 8111 2.679716 GAAGGGTGCATCAGGGCT 59.320 61.111 0.00 0.00 34.04 5.19
3884 8112 1.915228 GAAGGGTGCATCAGGGCTA 59.085 57.895 0.00 0.00 34.04 3.93
3885 8113 0.475906 GAAGGGTGCATCAGGGCTAT 59.524 55.000 0.00 0.00 34.04 2.97
3886 8114 0.184451 AAGGGTGCATCAGGGCTATG 59.816 55.000 0.00 0.00 34.04 2.23
3887 8115 1.228367 GGGTGCATCAGGGCTATGG 60.228 63.158 0.00 0.00 34.04 2.74
3888 8116 1.708993 GGGTGCATCAGGGCTATGGA 61.709 60.000 0.00 0.00 34.04 3.41
3889 8117 0.183492 GGTGCATCAGGGCTATGGAA 59.817 55.000 0.00 0.00 34.04 3.53
3890 8118 1.602311 GTGCATCAGGGCTATGGAAG 58.398 55.000 0.00 0.00 34.04 3.46
3912 8140 1.700523 CGTATCCGTTGACGAAACCA 58.299 50.000 4.91 0.00 41.60 3.67
3913 8141 2.060284 CGTATCCGTTGACGAAACCAA 58.940 47.619 4.91 0.00 41.60 3.67
3914 8142 2.669434 CGTATCCGTTGACGAAACCAAT 59.331 45.455 4.91 0.00 41.60 3.16
3915 8143 3.858812 CGTATCCGTTGACGAAACCAATA 59.141 43.478 4.91 0.00 41.60 1.90
3916 8144 4.326817 CGTATCCGTTGACGAAACCAATAA 59.673 41.667 4.91 0.00 41.60 1.40
3917 8145 5.005971 CGTATCCGTTGACGAAACCAATAAT 59.994 40.000 4.91 0.00 41.60 1.28
3918 8146 4.932268 TCCGTTGACGAAACCAATAATC 57.068 40.909 4.91 0.00 43.02 1.75
3919 8147 3.368539 TCCGTTGACGAAACCAATAATCG 59.631 43.478 4.91 0.00 43.02 3.34
3926 8154 5.229921 ACGAAACCAATAATCGTCAATGG 57.770 39.130 0.00 0.00 45.84 3.16
3927 8155 4.938832 ACGAAACCAATAATCGTCAATGGA 59.061 37.500 0.00 0.00 45.84 3.41
3928 8156 5.588648 ACGAAACCAATAATCGTCAATGGAT 59.411 36.000 0.00 0.00 45.84 3.41
3929 8157 5.909054 CGAAACCAATAATCGTCAATGGATG 59.091 40.000 0.00 0.00 35.16 3.51
3930 8158 4.836125 ACCAATAATCGTCAATGGATGC 57.164 40.909 0.00 0.00 35.16 3.91
3931 8159 4.464008 ACCAATAATCGTCAATGGATGCT 58.536 39.130 0.00 0.00 35.16 3.79
3932 8160 4.516698 ACCAATAATCGTCAATGGATGCTC 59.483 41.667 0.00 0.00 35.16 4.26
3933 8161 4.083110 CCAATAATCGTCAATGGATGCTCC 60.083 45.833 0.00 0.00 36.96 4.70
3934 8162 4.630644 ATAATCGTCAATGGATGCTCCT 57.369 40.909 4.21 0.00 37.46 3.69
3935 8163 2.251409 ATCGTCAATGGATGCTCCTG 57.749 50.000 4.21 0.00 37.46 3.86
3936 8164 0.462581 TCGTCAATGGATGCTCCTGC 60.463 55.000 4.21 0.00 37.46 4.85
3937 8165 0.463295 CGTCAATGGATGCTCCTGCT 60.463 55.000 4.21 0.00 37.46 4.24
3938 8166 1.202568 CGTCAATGGATGCTCCTGCTA 60.203 52.381 4.21 0.00 37.46 3.49
3939 8167 2.216898 GTCAATGGATGCTCCTGCTAC 58.783 52.381 4.21 0.00 37.46 3.58
3940 8168 1.202568 TCAATGGATGCTCCTGCTACG 60.203 52.381 4.21 0.00 37.46 3.51
3941 8169 0.833287 AATGGATGCTCCTGCTACGT 59.167 50.000 0.00 0.00 37.46 3.57
3942 8170 0.105593 ATGGATGCTCCTGCTACGTG 59.894 55.000 0.00 0.00 37.46 4.49
3943 8171 1.227380 GGATGCTCCTGCTACGTGG 60.227 63.158 0.00 0.00 40.48 4.94
3944 8172 1.517832 GATGCTCCTGCTACGTGGT 59.482 57.895 0.00 0.00 40.48 4.16
3945 8173 0.807667 GATGCTCCTGCTACGTGGTG 60.808 60.000 0.00 0.00 40.48 4.17
3946 8174 1.257750 ATGCTCCTGCTACGTGGTGA 61.258 55.000 0.00 0.00 40.48 4.02
3947 8175 1.153745 GCTCCTGCTACGTGGTGAG 60.154 63.158 0.00 4.63 36.03 3.51
3948 8176 1.153745 CTCCTGCTACGTGGTGAGC 60.154 63.158 0.00 0.00 39.25 4.26
3949 8177 2.125512 CCTGCTACGTGGTGAGCC 60.126 66.667 5.63 0.00 37.94 4.70
3950 8178 2.125512 CTGCTACGTGGTGAGCCC 60.126 66.667 5.63 0.00 37.94 5.19
3951 8179 2.920384 TGCTACGTGGTGAGCCCA 60.920 61.111 5.63 0.00 42.51 5.36
3960 8188 2.196742 TGGTGAGCCCATTATCCTCT 57.803 50.000 0.00 0.00 38.72 3.69
3961 8189 3.344535 TGGTGAGCCCATTATCCTCTA 57.655 47.619 0.00 0.00 38.72 2.43
3962 8190 3.874316 TGGTGAGCCCATTATCCTCTAT 58.126 45.455 0.00 0.00 38.72 1.98
3963 8191 5.023514 TGGTGAGCCCATTATCCTCTATA 57.976 43.478 0.00 0.00 38.72 1.31
3964 8192 5.411493 TGGTGAGCCCATTATCCTCTATAA 58.589 41.667 0.00 0.00 38.72 0.98
3965 8193 5.248477 TGGTGAGCCCATTATCCTCTATAAC 59.752 44.000 0.00 0.00 38.72 1.89
3966 8194 5.248477 GGTGAGCCCATTATCCTCTATAACA 59.752 44.000 0.00 0.00 32.86 2.41
3967 8195 6.166982 GTGAGCCCATTATCCTCTATAACAC 58.833 44.000 0.00 0.00 32.86 3.32
3968 8196 6.014156 GTGAGCCCATTATCCTCTATAACACT 60.014 42.308 0.00 0.00 32.86 3.55
3969 8197 7.178628 GTGAGCCCATTATCCTCTATAACACTA 59.821 40.741 0.00 0.00 32.86 2.74
3970 8198 7.733047 TGAGCCCATTATCCTCTATAACACTAA 59.267 37.037 0.00 0.00 32.86 2.24
3971 8199 8.140112 AGCCCATTATCCTCTATAACACTAAG 57.860 38.462 0.00 0.00 32.86 2.18
3972 8200 7.735321 AGCCCATTATCCTCTATAACACTAAGT 59.265 37.037 0.00 0.00 32.86 2.24
3973 8201 8.376270 GCCCATTATCCTCTATAACACTAAGTT 58.624 37.037 0.00 0.00 44.27 2.66
3974 8202 9.930693 CCCATTATCCTCTATAACACTAAGTTC 57.069 37.037 0.00 0.00 41.64 3.01
3975 8203 9.930693 CCATTATCCTCTATAACACTAAGTTCC 57.069 37.037 0.00 0.00 41.64 3.62
3995 8223 8.950007 AGTTCCTTAATTTTAAAGATCCCACA 57.050 30.769 0.00 0.00 0.00 4.17
3996 8224 9.547279 AGTTCCTTAATTTTAAAGATCCCACAT 57.453 29.630 0.00 0.00 0.00 3.21
3999 8227 9.983024 TCCTTAATTTTAAAGATCCCACATACA 57.017 29.630 0.00 0.00 0.00 2.29
4006 8234 7.880160 TTAAAGATCCCACATACAATTCAGG 57.120 36.000 0.00 0.00 0.00 3.86
4007 8235 5.456921 AAGATCCCACATACAATTCAGGT 57.543 39.130 0.00 0.00 0.00 4.00
4008 8236 5.041191 AGATCCCACATACAATTCAGGTC 57.959 43.478 0.00 0.00 0.00 3.85
4009 8237 4.723789 AGATCCCACATACAATTCAGGTCT 59.276 41.667 0.00 0.00 0.00 3.85
4010 8238 4.487714 TCCCACATACAATTCAGGTCTC 57.512 45.455 0.00 0.00 0.00 3.36
4011 8239 3.843619 TCCCACATACAATTCAGGTCTCA 59.156 43.478 0.00 0.00 0.00 3.27
4012 8240 4.288366 TCCCACATACAATTCAGGTCTCAA 59.712 41.667 0.00 0.00 0.00 3.02
4013 8241 5.044919 TCCCACATACAATTCAGGTCTCAAT 60.045 40.000 0.00 0.00 0.00 2.57
4014 8242 5.653769 CCCACATACAATTCAGGTCTCAATT 59.346 40.000 0.00 0.00 0.00 2.32
4015 8243 6.405065 CCCACATACAATTCAGGTCTCAATTG 60.405 42.308 5.90 5.90 43.05 2.32
4016 8244 6.375174 CCACATACAATTCAGGTCTCAATTGA 59.625 38.462 12.95 8.12 40.89 2.57
4017 8245 7.094248 CCACATACAATTCAGGTCTCAATTGAA 60.094 37.037 12.95 0.00 40.89 2.69
4018 8246 8.298854 CACATACAATTCAGGTCTCAATTGAAA 58.701 33.333 12.95 0.00 40.89 2.69
4019 8247 9.028284 ACATACAATTCAGGTCTCAATTGAAAT 57.972 29.630 12.95 2.42 40.89 2.17
4020 8248 9.865321 CATACAATTCAGGTCTCAATTGAAATT 57.135 29.630 12.95 8.42 40.89 1.82
4021 8249 9.865321 ATACAATTCAGGTCTCAATTGAAATTG 57.135 29.630 25.44 25.44 45.49 2.32
4022 8250 7.156673 ACAATTCAGGTCTCAATTGAAATTGG 58.843 34.615 28.00 17.89 44.51 3.16
4023 8251 7.015487 ACAATTCAGGTCTCAATTGAAATTGGA 59.985 33.333 28.00 14.63 44.51 3.53
4024 8252 7.729124 ATTCAGGTCTCAATTGAAATTGGAT 57.271 32.000 9.88 3.66 44.51 3.41
4025 8253 6.764308 TCAGGTCTCAATTGAAATTGGATC 57.236 37.500 9.88 3.31 44.51 3.36
4026 8254 6.247676 TCAGGTCTCAATTGAAATTGGATCA 58.752 36.000 9.88 0.00 44.51 2.92
4027 8255 6.720748 TCAGGTCTCAATTGAAATTGGATCAA 59.279 34.615 9.88 0.00 44.51 2.57
4028 8256 6.810182 CAGGTCTCAATTGAAATTGGATCAAC 59.190 38.462 9.88 6.98 44.51 3.18
4029 8257 6.494491 AGGTCTCAATTGAAATTGGATCAACA 59.506 34.615 9.88 0.00 44.51 3.33
4030 8258 7.015487 AGGTCTCAATTGAAATTGGATCAACAA 59.985 33.333 9.88 0.00 44.51 2.83
4031 8259 7.820872 GGTCTCAATTGAAATTGGATCAACAAT 59.179 33.333 9.88 0.00 44.51 2.71
4086 8314 8.712285 TTTTGTACTATACACACTATGCTTCC 57.288 34.615 0.00 0.00 38.63 3.46
4087 8315 7.655521 TTGTACTATACACACTATGCTTCCT 57.344 36.000 0.00 0.00 38.63 3.36
4088 8316 8.756486 TTGTACTATACACACTATGCTTCCTA 57.244 34.615 0.00 0.00 38.63 2.94
4089 8317 8.756486 TGTACTATACACACTATGCTTCCTAA 57.244 34.615 0.00 0.00 32.89 2.69
4090 8318 9.363401 TGTACTATACACACTATGCTTCCTAAT 57.637 33.333 0.00 0.00 32.89 1.73
4098 8326 9.561069 ACACACTATGCTTCCTAATTTATAAGG 57.439 33.333 0.00 0.00 0.00 2.69
4099 8327 9.561069 CACACTATGCTTCCTAATTTATAAGGT 57.439 33.333 0.00 0.00 34.30 3.50
4100 8328 9.780186 ACACTATGCTTCCTAATTTATAAGGTC 57.220 33.333 0.00 0.00 34.30 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.108585 ACCAGTCAGTCAACGCCATT 59.891 50.000 0.00 0.00 0.00 3.16
1 2 0.603707 CACCAGTCAGTCAACGCCAT 60.604 55.000 0.00 0.00 0.00 4.40
2 3 1.227527 CACCAGTCAGTCAACGCCA 60.228 57.895 0.00 0.00 0.00 5.69
3 4 1.961277 CCACCAGTCAGTCAACGCC 60.961 63.158 0.00 0.00 0.00 5.68
4 5 1.222115 GACCACCAGTCAGTCAACGC 61.222 60.000 0.00 0.00 45.55 4.84
6 7 0.104304 ACGACCACCAGTCAGTCAAC 59.896 55.000 0.00 0.00 46.69 3.18
7 8 0.387929 GACGACCACCAGTCAGTCAA 59.612 55.000 0.00 0.00 46.69 3.18
8 9 1.792118 CGACGACCACCAGTCAGTCA 61.792 60.000 13.84 0.00 46.69 3.41
9 10 1.081376 CGACGACCACCAGTCAGTC 60.081 63.158 0.00 0.00 46.69 3.51
10 11 3.039988 CGACGACCACCAGTCAGT 58.960 61.111 0.00 0.00 46.69 3.41
11 12 2.430921 GCGACGACCACCAGTCAG 60.431 66.667 0.00 0.00 46.69 3.51
12 13 3.986006 GGCGACGACCACCAGTCA 61.986 66.667 0.00 0.00 46.69 3.41
24 25 2.461110 ATGGAATTGCGTCGGCGAC 61.461 57.895 29.06 29.06 44.10 5.19
25 26 2.125310 ATGGAATTGCGTCGGCGA 60.125 55.556 16.53 4.99 44.10 5.54
26 27 2.023181 CATGGAATTGCGTCGGCG 59.977 61.111 4.29 4.29 44.10 6.46
27 28 2.278142 GCATGGAATTGCGTCGGC 60.278 61.111 0.00 0.00 40.52 5.54
28 29 1.063006 CTGCATGGAATTGCGTCGG 59.937 57.895 0.00 0.00 45.77 4.79
29 30 1.584483 GCTGCATGGAATTGCGTCG 60.584 57.895 0.00 0.00 45.77 5.12
30 31 1.584483 CGCTGCATGGAATTGCGTC 60.584 57.895 10.52 0.00 45.77 5.19
31 32 1.985447 CTCGCTGCATGGAATTGCGT 61.985 55.000 16.64 0.00 45.77 5.24
32 33 1.298116 CTCGCTGCATGGAATTGCG 60.298 57.895 12.18 12.18 45.77 4.85
33 34 1.588139 GCTCGCTGCATGGAATTGC 60.588 57.895 0.00 0.00 43.07 3.56
34 35 1.298116 CGCTCGCTGCATGGAATTG 60.298 57.895 0.00 0.00 43.06 2.32
35 36 2.475466 CCGCTCGCTGCATGGAATT 61.475 57.895 0.00 0.00 43.06 2.17
36 37 2.898840 CCGCTCGCTGCATGGAAT 60.899 61.111 0.00 0.00 43.06 3.01
60 61 4.570663 ATGTAGCTCCGTCGCCGC 62.571 66.667 0.00 0.00 0.00 6.53
61 62 2.353607 GATGTAGCTCCGTCGCCG 60.354 66.667 0.00 0.00 0.00 6.46
62 63 2.027751 GGATGTAGCTCCGTCGCC 59.972 66.667 0.00 0.00 0.00 5.54
68 69 2.210711 CCCCTCCGGATGTAGCTCC 61.211 68.421 3.57 0.00 0.00 4.70
69 70 2.873525 GCCCCTCCGGATGTAGCTC 61.874 68.421 3.57 0.00 0.00 4.09
70 71 2.844839 GCCCCTCCGGATGTAGCT 60.845 66.667 3.57 0.00 0.00 3.32
71 72 4.301027 CGCCCCTCCGGATGTAGC 62.301 72.222 3.57 6.77 0.00 3.58
72 73 4.301027 GCGCCCCTCCGGATGTAG 62.301 72.222 3.57 0.00 0.00 2.74
73 74 2.725127 ATAGCGCCCCTCCGGATGTA 62.725 60.000 3.57 0.00 0.00 2.29
74 75 2.725127 TATAGCGCCCCTCCGGATGT 62.725 60.000 3.57 0.00 0.00 3.06
75 76 1.541310 TTATAGCGCCCCTCCGGATG 61.541 60.000 3.57 0.81 0.00 3.51
76 77 1.229082 TTATAGCGCCCCTCCGGAT 60.229 57.895 3.57 0.00 0.00 4.18
77 78 2.199257 TTATAGCGCCCCTCCGGA 59.801 61.111 2.93 2.93 0.00 5.14
78 79 2.342648 GTTATAGCGCCCCTCCGG 59.657 66.667 2.29 0.00 0.00 5.14
79 80 2.342648 GGTTATAGCGCCCCTCCG 59.657 66.667 2.29 0.00 0.00 4.63
80 81 2.342648 CGGTTATAGCGCCCCTCC 59.657 66.667 2.29 0.00 30.39 4.30
81 82 1.006454 GACGGTTATAGCGCCCCTC 60.006 63.158 2.29 0.00 43.79 4.30
82 83 2.853290 CGACGGTTATAGCGCCCCT 61.853 63.158 2.29 0.00 43.79 4.79
83 84 2.355481 CGACGGTTATAGCGCCCC 60.355 66.667 2.29 0.00 43.79 5.80
84 85 3.034343 GCGACGGTTATAGCGCCC 61.034 66.667 2.29 0.00 43.79 6.13
125 126 1.134367 CCTCAATCCATGCAACAGCTG 59.866 52.381 13.48 13.48 0.00 4.24
126 127 1.272313 ACCTCAATCCATGCAACAGCT 60.272 47.619 0.00 0.00 0.00 4.24
127 128 1.180029 ACCTCAATCCATGCAACAGC 58.820 50.000 0.00 0.00 0.00 4.40
128 129 3.614092 ACTACCTCAATCCATGCAACAG 58.386 45.455 0.00 0.00 0.00 3.16
129 130 3.719268 ACTACCTCAATCCATGCAACA 57.281 42.857 0.00 0.00 0.00 3.33
130 131 5.391312 AAAACTACCTCAATCCATGCAAC 57.609 39.130 0.00 0.00 0.00 4.17
131 132 5.538053 TCAAAAACTACCTCAATCCATGCAA 59.462 36.000 0.00 0.00 0.00 4.08
132 133 5.048083 GTCAAAAACTACCTCAATCCATGCA 60.048 40.000 0.00 0.00 0.00 3.96
133 134 5.183904 AGTCAAAAACTACCTCAATCCATGC 59.816 40.000 0.00 0.00 36.07 4.06
134 135 6.824305 AGTCAAAAACTACCTCAATCCATG 57.176 37.500 0.00 0.00 36.07 3.66
146 147 7.442969 ACGTTGAATGGATGTAGTCAAAAACTA 59.557 33.333 0.00 0.00 36.55 2.24
147 148 6.262273 ACGTTGAATGGATGTAGTCAAAAACT 59.738 34.615 0.00 0.00 36.55 2.66
148 149 6.435428 ACGTTGAATGGATGTAGTCAAAAAC 58.565 36.000 0.00 0.00 36.55 2.43
149 150 6.565060 CGACGTTGAATGGATGTAGTCAAAAA 60.565 38.462 0.00 0.00 36.55 1.94
150 151 5.107259 CGACGTTGAATGGATGTAGTCAAAA 60.107 40.000 0.00 0.00 36.55 2.44
151 152 4.387559 CGACGTTGAATGGATGTAGTCAAA 59.612 41.667 0.00 0.00 36.55 2.69
152 153 3.924073 CGACGTTGAATGGATGTAGTCAA 59.076 43.478 0.00 0.00 32.88 3.18
153 154 3.191791 TCGACGTTGAATGGATGTAGTCA 59.808 43.478 2.05 0.00 0.00 3.41
154 155 3.766151 TCGACGTTGAATGGATGTAGTC 58.234 45.455 2.05 0.00 0.00 2.59
155 156 3.442625 TCTCGACGTTGAATGGATGTAGT 59.557 43.478 6.99 0.00 0.00 2.73
156 157 4.028852 TCTCGACGTTGAATGGATGTAG 57.971 45.455 6.99 0.00 0.00 2.74
157 158 4.171005 GTTCTCGACGTTGAATGGATGTA 58.829 43.478 6.99 0.00 0.00 2.29
158 159 2.993899 GTTCTCGACGTTGAATGGATGT 59.006 45.455 6.99 0.00 0.00 3.06
159 160 2.028045 CGTTCTCGACGTTGAATGGATG 59.972 50.000 6.99 0.00 46.49 3.51
160 161 2.259618 CGTTCTCGACGTTGAATGGAT 58.740 47.619 6.99 0.00 46.49 3.41
161 162 1.693467 CGTTCTCGACGTTGAATGGA 58.307 50.000 6.99 0.00 46.49 3.41
194 195 3.756727 GTCCTCGTGGTCGGTCCC 61.757 72.222 2.99 0.00 37.69 4.46
195 196 4.112341 CGTCCTCGTGGTCGGTCC 62.112 72.222 14.07 0.00 40.31 4.46
200 201 4.436998 CTGGCCGTCCTCGTGGTC 62.437 72.222 2.99 0.00 35.01 4.02
215 216 4.087892 CTGTCCCCACCCTCGCTG 62.088 72.222 0.00 0.00 0.00 5.18
216 217 4.316823 TCTGTCCCCACCCTCGCT 62.317 66.667 0.00 0.00 0.00 4.93
217 218 4.083862 GTCTGTCCCCACCCTCGC 62.084 72.222 0.00 0.00 0.00 5.03
218 219 3.391382 GGTCTGTCCCCACCCTCG 61.391 72.222 0.00 0.00 0.00 4.63
219 220 2.203938 TGGTCTGTCCCCACCCTC 60.204 66.667 0.00 0.00 34.77 4.30
220 221 2.529389 GTGGTCTGTCCCCACCCT 60.529 66.667 0.00 0.00 45.43 4.34
224 225 1.074090 TCCTTGTGGTCTGTCCCCA 60.074 57.895 0.00 0.00 34.77 4.96
225 226 1.375326 GTCCTTGTGGTCTGTCCCC 59.625 63.158 0.00 0.00 34.77 4.81
226 227 1.004918 CGTCCTTGTGGTCTGTCCC 60.005 63.158 0.00 0.00 34.77 4.46
227 228 1.004918 CCGTCCTTGTGGTCTGTCC 60.005 63.158 0.00 0.00 34.23 4.02
228 229 1.668151 GCCGTCCTTGTGGTCTGTC 60.668 63.158 0.00 0.00 34.23 3.51
229 230 2.426023 GCCGTCCTTGTGGTCTGT 59.574 61.111 0.00 0.00 34.23 3.41
230 231 2.358737 GGCCGTCCTTGTGGTCTG 60.359 66.667 0.00 0.00 34.23 3.51
231 232 2.185310 GATGGCCGTCCTTGTGGTCT 62.185 60.000 14.58 0.00 34.23 3.85
232 233 1.745489 GATGGCCGTCCTTGTGGTC 60.745 63.158 14.58 0.00 34.23 4.02
233 234 2.351276 GATGGCCGTCCTTGTGGT 59.649 61.111 14.58 0.00 34.23 4.16
234 235 2.819595 CGATGGCCGTCCTTGTGG 60.820 66.667 19.51 0.00 0.00 4.17
235 236 2.819595 CCGATGGCCGTCCTTGTG 60.820 66.667 19.51 4.62 36.31 3.33
236 237 3.000819 TCCGATGGCCGTCCTTGT 61.001 61.111 19.51 0.00 36.31 3.16
237 238 2.202932 CTCCGATGGCCGTCCTTG 60.203 66.667 19.51 8.30 36.31 3.61
238 239 3.470888 CCTCCGATGGCCGTCCTT 61.471 66.667 19.51 0.00 36.31 3.36
244 245 3.866582 CAGTCCCCTCCGATGGCC 61.867 72.222 0.00 0.00 0.00 5.36
245 246 4.554036 GCAGTCCCCTCCGATGGC 62.554 72.222 0.00 0.00 0.00 4.40
246 247 3.083349 TGCAGTCCCCTCCGATGG 61.083 66.667 0.00 0.00 0.00 3.51
247 248 2.503061 CTGCAGTCCCCTCCGATG 59.497 66.667 5.25 0.00 0.00 3.84
248 249 2.765807 CCTGCAGTCCCCTCCGAT 60.766 66.667 13.81 0.00 0.00 4.18
268 269 3.791928 CTCACGATCCTCGACGCCG 62.792 68.421 3.20 0.00 43.74 6.46
269 270 2.024871 CTCACGATCCTCGACGCC 59.975 66.667 3.20 0.00 43.74 5.68
270 271 1.583967 CACTCACGATCCTCGACGC 60.584 63.158 3.20 0.00 43.74 5.19
271 272 1.062685 CCACTCACGATCCTCGACG 59.937 63.158 3.20 0.00 43.74 5.12
272 273 1.030488 TCCCACTCACGATCCTCGAC 61.030 60.000 3.20 0.00 43.74 4.20
273 274 0.748367 CTCCCACTCACGATCCTCGA 60.748 60.000 3.20 0.00 43.74 4.04
274 275 1.032657 ACTCCCACTCACGATCCTCG 61.033 60.000 0.00 0.00 46.93 4.63
275 276 1.134965 CAACTCCCACTCACGATCCTC 60.135 57.143 0.00 0.00 0.00 3.71
276 277 0.898320 CAACTCCCACTCACGATCCT 59.102 55.000 0.00 0.00 0.00 3.24
277 278 0.741221 GCAACTCCCACTCACGATCC 60.741 60.000 0.00 0.00 0.00 3.36
278 279 0.247736 AGCAACTCCCACTCACGATC 59.752 55.000 0.00 0.00 0.00 3.69
279 280 0.036952 CAGCAACTCCCACTCACGAT 60.037 55.000 0.00 0.00 0.00 3.73
280 281 1.112916 TCAGCAACTCCCACTCACGA 61.113 55.000 0.00 0.00 0.00 4.35
281 282 0.036952 ATCAGCAACTCCCACTCACG 60.037 55.000 0.00 0.00 0.00 4.35
282 283 1.677217 GGATCAGCAACTCCCACTCAC 60.677 57.143 0.00 0.00 0.00 3.51
283 284 0.615331 GGATCAGCAACTCCCACTCA 59.385 55.000 0.00 0.00 0.00 3.41
284 285 0.615331 TGGATCAGCAACTCCCACTC 59.385 55.000 0.00 0.00 0.00 3.51
285 286 0.617413 CTGGATCAGCAACTCCCACT 59.383 55.000 0.00 0.00 0.00 4.00
286 287 3.165606 CTGGATCAGCAACTCCCAC 57.834 57.895 0.00 0.00 0.00 4.61
296 297 1.493861 TCTTCCTCAGGCTGGATCAG 58.506 55.000 15.73 4.19 33.09 2.90
297 298 1.836166 CTTCTTCCTCAGGCTGGATCA 59.164 52.381 15.73 0.00 33.09 2.92
298 299 2.114616 TCTTCTTCCTCAGGCTGGATC 58.885 52.381 15.73 0.00 33.09 3.36
299 300 2.260639 TCTTCTTCCTCAGGCTGGAT 57.739 50.000 15.73 0.00 33.09 3.41
300 301 1.905215 CTTCTTCTTCCTCAGGCTGGA 59.095 52.381 15.73 1.32 0.00 3.86
301 302 1.905215 TCTTCTTCTTCCTCAGGCTGG 59.095 52.381 15.73 5.31 0.00 4.85
302 303 2.673610 CGTCTTCTTCTTCCTCAGGCTG 60.674 54.545 8.58 8.58 0.00 4.85
303 304 1.548269 CGTCTTCTTCTTCCTCAGGCT 59.452 52.381 0.00 0.00 0.00 4.58
304 305 1.273886 ACGTCTTCTTCTTCCTCAGGC 59.726 52.381 0.00 0.00 0.00 4.85
305 306 2.558795 TCACGTCTTCTTCTTCCTCAGG 59.441 50.000 0.00 0.00 0.00 3.86
306 307 3.832276 CTCACGTCTTCTTCTTCCTCAG 58.168 50.000 0.00 0.00 0.00 3.35
307 308 2.029828 GCTCACGTCTTCTTCTTCCTCA 60.030 50.000 0.00 0.00 0.00 3.86
308 309 2.601804 GCTCACGTCTTCTTCTTCCTC 58.398 52.381 0.00 0.00 0.00 3.71
309 310 1.068194 CGCTCACGTCTTCTTCTTCCT 60.068 52.381 0.00 0.00 33.53 3.36
310 311 1.068472 TCGCTCACGTCTTCTTCTTCC 60.068 52.381 0.00 0.00 41.18 3.46
311 312 2.333389 TCGCTCACGTCTTCTTCTTC 57.667 50.000 0.00 0.00 41.18 2.87
312 313 2.795175 TTCGCTCACGTCTTCTTCTT 57.205 45.000 0.00 0.00 41.18 2.52
313 314 2.729467 CGATTCGCTCACGTCTTCTTCT 60.729 50.000 0.00 0.00 41.18 2.85
314 315 1.579808 CGATTCGCTCACGTCTTCTTC 59.420 52.381 0.00 0.00 41.18 2.87
315 316 1.068472 ACGATTCGCTCACGTCTTCTT 60.068 47.619 5.86 0.00 41.18 2.52
316 317 0.522180 ACGATTCGCTCACGTCTTCT 59.478 50.000 5.86 0.00 41.18 2.85
317 318 1.337821 AACGATTCGCTCACGTCTTC 58.662 50.000 5.86 0.00 39.31 2.87
318 319 1.779569 AAACGATTCGCTCACGTCTT 58.220 45.000 5.86 0.00 39.31 3.01
319 320 1.779569 AAAACGATTCGCTCACGTCT 58.220 45.000 5.86 0.00 39.31 4.18
320 321 2.155155 AGAAAAACGATTCGCTCACGTC 59.845 45.455 5.86 0.00 39.31 4.34
321 322 2.132762 AGAAAAACGATTCGCTCACGT 58.867 42.857 5.86 0.00 41.97 4.49
322 323 2.856091 AGAAAAACGATTCGCTCACG 57.144 45.000 5.86 0.00 42.01 4.35
323 324 5.866503 AAAAAGAAAAACGATTCGCTCAC 57.133 34.783 5.86 0.00 34.46 3.51
343 344 1.278699 GCCAATGGATCTGGGCAAAAA 59.721 47.619 2.05 0.00 45.70 1.94
344 345 0.903942 GCCAATGGATCTGGGCAAAA 59.096 50.000 2.05 0.00 45.70 2.44
345 346 2.594342 GCCAATGGATCTGGGCAAA 58.406 52.632 2.05 0.00 45.70 3.68
346 347 4.360643 GCCAATGGATCTGGGCAA 57.639 55.556 2.05 0.00 45.70 4.52
349 350 1.397390 GCTTGGCCAATGGATCTGGG 61.397 60.000 20.85 4.81 34.25 4.45
350 351 1.731433 CGCTTGGCCAATGGATCTGG 61.731 60.000 20.85 5.61 36.99 3.86
351 352 1.731433 CCGCTTGGCCAATGGATCTG 61.731 60.000 25.59 11.86 0.00 2.90
352 353 1.454479 CCGCTTGGCCAATGGATCT 60.454 57.895 25.59 0.00 0.00 2.75
353 354 3.122850 CCGCTTGGCCAATGGATC 58.877 61.111 25.59 10.35 0.00 3.36
368 369 4.520846 GCCGTTTGATGCGAGCCG 62.521 66.667 0.00 0.00 0.00 5.52
369 370 3.127533 AGCCGTTTGATGCGAGCC 61.128 61.111 0.00 0.00 0.00 4.70
370 371 2.099062 CAGCCGTTTGATGCGAGC 59.901 61.111 0.00 0.00 0.00 5.03
371 372 2.753966 CCCAGCCGTTTGATGCGAG 61.754 63.158 0.00 0.00 0.00 5.03
372 373 2.745884 CCCAGCCGTTTGATGCGA 60.746 61.111 0.00 0.00 0.00 5.10
373 374 3.814268 CCCCAGCCGTTTGATGCG 61.814 66.667 0.00 0.00 0.00 4.73
374 375 4.133796 GCCCCAGCCGTTTGATGC 62.134 66.667 0.00 0.00 0.00 3.91
375 376 3.814268 CGCCCCAGCCGTTTGATG 61.814 66.667 0.00 0.00 34.57 3.07
392 393 2.745100 GAAGTTTCGGCCGGTCCC 60.745 66.667 27.83 11.11 0.00 4.46
393 394 2.745100 GGAAGTTTCGGCCGGTCC 60.745 66.667 27.83 19.39 0.00 4.46
394 395 3.116531 CGGAAGTTTCGGCCGGTC 61.117 66.667 27.83 15.72 41.29 4.79
426 427 1.141234 ACTAAGGCGAACGCTAGGC 59.859 57.895 18.14 2.39 41.60 3.93
427 428 0.172803 ACACTAAGGCGAACGCTAGG 59.827 55.000 18.14 9.61 41.60 3.02
428 429 2.838386 TACACTAAGGCGAACGCTAG 57.162 50.000 18.14 14.56 41.60 3.42
429 430 2.733227 GCTTACACTAAGGCGAACGCTA 60.733 50.000 18.14 3.87 41.60 4.26
430 431 1.992170 CTTACACTAAGGCGAACGCT 58.008 50.000 18.14 2.84 41.60 5.07
431 432 0.369248 GCTTACACTAAGGCGAACGC 59.631 55.000 10.81 10.81 36.31 4.84
432 433 1.654105 CTGCTTACACTAAGGCGAACG 59.346 52.381 0.00 0.00 36.31 3.95
433 434 1.393883 GCTGCTTACACTAAGGCGAAC 59.606 52.381 0.00 0.00 36.31 3.95
434 435 1.722011 GCTGCTTACACTAAGGCGAA 58.278 50.000 0.00 0.00 36.31 4.70
435 436 0.457853 CGCTGCTTACACTAAGGCGA 60.458 55.000 0.00 0.00 43.99 5.54
436 437 0.457853 TCGCTGCTTACACTAAGGCG 60.458 55.000 0.00 0.00 43.22 5.52
437 438 1.941325 ATCGCTGCTTACACTAAGGC 58.059 50.000 0.00 0.00 36.31 4.35
438 439 2.609459 CCAATCGCTGCTTACACTAAGG 59.391 50.000 0.00 0.00 36.31 2.69
439 440 3.262420 ACCAATCGCTGCTTACACTAAG 58.738 45.455 0.00 0.00 38.80 2.18
480 481 4.739716 CCAACTTTTCGTTCAAATCACCTG 59.260 41.667 0.00 0.00 32.27 4.00
481 482 4.642885 TCCAACTTTTCGTTCAAATCACCT 59.357 37.500 0.00 0.00 32.27 4.00
493 494 4.209288 CGCCACTCTATATCCAACTTTTCG 59.791 45.833 0.00 0.00 0.00 3.46
534 535 6.405278 TTTCAAAAATGAAGGAAGGGAGAC 57.595 37.500 0.00 0.00 0.00 3.36
582 583 9.166173 TGTTTGAGATGATTTATACTTCCAGTG 57.834 33.333 0.00 0.00 0.00 3.66
597 598 9.753674 AGGGAGTTTTTATTATGTTTGAGATGA 57.246 29.630 0.00 0.00 0.00 2.92
625 641 6.700081 CGCACTATAAAAAGCCACACTATAGA 59.300 38.462 6.78 0.00 0.00 1.98
627 643 5.756347 CCGCACTATAAAAAGCCACACTATA 59.244 40.000 0.00 0.00 0.00 1.31
628 644 4.574828 CCGCACTATAAAAAGCCACACTAT 59.425 41.667 0.00 0.00 0.00 2.12
629 645 3.936453 CCGCACTATAAAAAGCCACACTA 59.064 43.478 0.00 0.00 0.00 2.74
630 646 2.747446 CCGCACTATAAAAAGCCACACT 59.253 45.455 0.00 0.00 0.00 3.55
631 647 2.731027 GCCGCACTATAAAAAGCCACAC 60.731 50.000 0.00 0.00 0.00 3.82
632 648 1.470890 GCCGCACTATAAAAAGCCACA 59.529 47.619 0.00 0.00 0.00 4.17
633 649 1.202256 GGCCGCACTATAAAAAGCCAC 60.202 52.381 0.00 0.00 38.79 5.01
634 650 1.099689 GGCCGCACTATAAAAAGCCA 58.900 50.000 0.00 0.00 38.79 4.75
635 651 1.333931 GAGGCCGCACTATAAAAAGCC 59.666 52.381 0.00 0.00 39.25 4.35
636 652 2.289565 AGAGGCCGCACTATAAAAAGC 58.710 47.619 9.88 0.00 0.00 3.51
637 653 4.694339 ACTAGAGGCCGCACTATAAAAAG 58.306 43.478 9.88 0.87 0.00 2.27
638 654 4.748277 ACTAGAGGCCGCACTATAAAAA 57.252 40.909 9.88 0.00 0.00 1.94
639 655 4.690122 GAACTAGAGGCCGCACTATAAAA 58.310 43.478 9.88 0.00 0.00 1.52
640 656 3.243301 CGAACTAGAGGCCGCACTATAAA 60.243 47.826 9.88 0.00 0.00 1.40
641 657 2.292569 CGAACTAGAGGCCGCACTATAA 59.707 50.000 9.88 0.00 0.00 0.98
677 693 8.962912 TCTTAGGGGTTTATAATAGTCTACCC 57.037 38.462 11.06 11.06 43.59 3.69
705 721 7.368480 TGTGTATGTCAAAGTCAGATTCATG 57.632 36.000 0.00 0.00 0.00 3.07
851 904 3.684305 TGTTGTGAGTTGTGAAGTGTGAG 59.316 43.478 0.00 0.00 0.00 3.51
852 905 3.435327 GTGTTGTGAGTTGTGAAGTGTGA 59.565 43.478 0.00 0.00 0.00 3.58
853 906 3.436704 AGTGTTGTGAGTTGTGAAGTGTG 59.563 43.478 0.00 0.00 0.00 3.82
854 907 3.674997 AGTGTTGTGAGTTGTGAAGTGT 58.325 40.909 0.00 0.00 0.00 3.55
855 908 4.870426 ACTAGTGTTGTGAGTTGTGAAGTG 59.130 41.667 0.00 0.00 0.00 3.16
856 909 5.086104 ACTAGTGTTGTGAGTTGTGAAGT 57.914 39.130 0.00 0.00 0.00 3.01
857 910 5.109210 TGACTAGTGTTGTGAGTTGTGAAG 58.891 41.667 0.00 0.00 0.00 3.02
865 918 2.802816 GTGGCTTGACTAGTGTTGTGAG 59.197 50.000 0.00 0.00 0.00 3.51
881 934 0.543749 GATAGTTGGGCTCTGTGGCT 59.456 55.000 3.30 0.00 41.48 4.75
882 935 0.253044 TGATAGTTGGGCTCTGTGGC 59.747 55.000 0.00 0.00 40.96 5.01
894 947 1.275291 CGTGGTGGACTGGTGATAGTT 59.725 52.381 0.00 0.00 0.00 2.24
935 988 0.554792 CAGGCTGAAGGAATGGGGAT 59.445 55.000 9.42 0.00 0.00 3.85
1057 1141 1.270625 TGCCAGAAGGTTGAAGTACGG 60.271 52.381 0.00 0.00 37.19 4.02
1416 1523 2.815211 CCTGATGTGGGCGTCGTG 60.815 66.667 0.00 0.00 33.44 4.35
1767 1895 2.537560 GCAAGGCATCGACATCCCG 61.538 63.158 0.00 0.00 0.00 5.14
1895 2023 4.693095 TCGACGATGATTTCATTGAAACCA 59.307 37.500 13.80 11.22 39.56 3.67
2064 2195 6.053005 CACAGAAGTAACAAGACCCAGTTAA 58.947 40.000 0.00 0.00 32.55 2.01
2717 5023 4.136051 TCATCACTGTCAGCACAATCAAA 58.864 39.130 0.00 0.00 29.82 2.69
2760 5147 5.174395 CCTCAACAGAAGAACCTGACATAG 58.826 45.833 0.00 0.00 37.59 2.23
2761 5148 4.020218 CCCTCAACAGAAGAACCTGACATA 60.020 45.833 0.00 0.00 37.59 2.29
2762 5149 3.244700 CCCTCAACAGAAGAACCTGACAT 60.245 47.826 0.00 0.00 37.59 3.06
2763 5150 2.104792 CCCTCAACAGAAGAACCTGACA 59.895 50.000 0.00 0.00 37.59 3.58
2764 5151 2.772287 CCCTCAACAGAAGAACCTGAC 58.228 52.381 0.00 0.00 37.59 3.51
2765 5152 1.072331 GCCCTCAACAGAAGAACCTGA 59.928 52.381 0.00 0.00 37.59 3.86
2766 5153 1.202806 TGCCCTCAACAGAAGAACCTG 60.203 52.381 0.00 0.00 39.93 4.00
2767 5154 1.140312 TGCCCTCAACAGAAGAACCT 58.860 50.000 0.00 0.00 0.00 3.50
2768 5155 1.981256 TTGCCCTCAACAGAAGAACC 58.019 50.000 0.00 0.00 0.00 3.62
2769 5156 2.352127 GCATTGCCCTCAACAGAAGAAC 60.352 50.000 0.00 0.00 34.60 3.01
2770 5157 1.888512 GCATTGCCCTCAACAGAAGAA 59.111 47.619 0.00 0.00 34.60 2.52
2771 5158 1.538047 GCATTGCCCTCAACAGAAGA 58.462 50.000 0.00 0.00 34.60 2.87
2772 5159 0.169672 CGCATTGCCCTCAACAGAAG 59.830 55.000 2.41 0.00 34.60 2.85
2773 5160 1.865788 GCGCATTGCCCTCAACAGAA 61.866 55.000 0.30 0.00 37.76 3.02
2774 5161 2.334946 GCGCATTGCCCTCAACAGA 61.335 57.895 0.30 0.00 37.76 3.41
2775 5162 2.180017 GCGCATTGCCCTCAACAG 59.820 61.111 0.30 0.00 37.76 3.16
2784 5171 2.431260 CACCTGTTGGCGCATTGC 60.431 61.111 10.83 0.00 45.38 3.56
2785 5172 1.804396 TTCCACCTGTTGGCGCATTG 61.804 55.000 10.83 0.00 46.47 2.82
2786 5173 1.526575 CTTCCACCTGTTGGCGCATT 61.527 55.000 10.83 0.00 46.47 3.56
2787 5174 1.973281 CTTCCACCTGTTGGCGCAT 60.973 57.895 10.83 0.00 46.47 4.73
2788 5175 2.594303 CTTCCACCTGTTGGCGCA 60.594 61.111 10.83 0.00 46.47 6.09
2789 5176 4.043200 GCTTCCACCTGTTGGCGC 62.043 66.667 0.00 0.00 46.47 6.53
2790 5177 2.594303 TGCTTCCACCTGTTGGCG 60.594 61.111 0.00 0.00 46.47 5.69
2791 5178 1.529244 ACTGCTTCCACCTGTTGGC 60.529 57.895 0.00 0.00 46.47 4.52
2793 5180 1.799258 GCCACTGCTTCCACCTGTTG 61.799 60.000 0.00 0.00 33.53 3.33
2794 5181 1.529244 GCCACTGCTTCCACCTGTT 60.529 57.895 0.00 0.00 33.53 3.16
2795 5182 2.113986 GCCACTGCTTCCACCTGT 59.886 61.111 0.00 0.00 33.53 4.00
2796 5183 1.970114 CTGCCACTGCTTCCACCTG 60.970 63.158 0.00 0.00 38.71 4.00
2797 5184 2.433446 CTGCCACTGCTTCCACCT 59.567 61.111 0.00 0.00 38.71 4.00
2798 5185 2.113986 ACTGCCACTGCTTCCACC 59.886 61.111 0.00 0.00 38.71 4.61
2799 5186 0.607489 ATCACTGCCACTGCTTCCAC 60.607 55.000 0.00 0.00 38.71 4.02
2800 5187 0.607217 CATCACTGCCACTGCTTCCA 60.607 55.000 0.00 0.00 38.71 3.53
2801 5188 0.321919 TCATCACTGCCACTGCTTCC 60.322 55.000 0.00 0.00 38.71 3.46
2802 5189 1.400846 CATCATCACTGCCACTGCTTC 59.599 52.381 0.00 0.00 38.71 3.86
2803 5190 1.271762 ACATCATCACTGCCACTGCTT 60.272 47.619 0.00 0.00 38.71 3.91
2804 5191 0.327259 ACATCATCACTGCCACTGCT 59.673 50.000 0.00 0.00 38.71 4.24
2805 5192 0.450583 CACATCATCACTGCCACTGC 59.549 55.000 0.00 0.00 38.26 4.40
2806 5193 1.092348 CCACATCATCACTGCCACTG 58.908 55.000 0.00 0.00 0.00 3.66
2807 5194 0.694771 ACCACATCATCACTGCCACT 59.305 50.000 0.00 0.00 0.00 4.00
2808 5195 2.401583 TACCACATCATCACTGCCAC 57.598 50.000 0.00 0.00 0.00 5.01
2809 5196 3.281158 CATTACCACATCATCACTGCCA 58.719 45.455 0.00 0.00 0.00 4.92
2810 5197 2.620115 CCATTACCACATCATCACTGCC 59.380 50.000 0.00 0.00 0.00 4.85
2811 5198 3.544684 TCCATTACCACATCATCACTGC 58.455 45.455 0.00 0.00 0.00 4.40
2812 5199 4.132336 CCTCCATTACCACATCATCACTG 58.868 47.826 0.00 0.00 0.00 3.66
2813 5200 3.137176 CCCTCCATTACCACATCATCACT 59.863 47.826 0.00 0.00 0.00 3.41
2814 5201 3.136443 TCCCTCCATTACCACATCATCAC 59.864 47.826 0.00 0.00 0.00 3.06
2815 5202 3.392285 CTCCCTCCATTACCACATCATCA 59.608 47.826 0.00 0.00 0.00 3.07
2816 5203 3.244700 CCTCCCTCCATTACCACATCATC 60.245 52.174 0.00 0.00 0.00 2.92
2817 5204 2.713167 CCTCCCTCCATTACCACATCAT 59.287 50.000 0.00 0.00 0.00 2.45
2818 5205 2.126882 CCTCCCTCCATTACCACATCA 58.873 52.381 0.00 0.00 0.00 3.07
2819 5206 1.202818 GCCTCCCTCCATTACCACATC 60.203 57.143 0.00 0.00 0.00 3.06
2820 5207 0.846693 GCCTCCCTCCATTACCACAT 59.153 55.000 0.00 0.00 0.00 3.21
2821 5208 1.279025 GGCCTCCCTCCATTACCACA 61.279 60.000 0.00 0.00 0.00 4.17
2822 5209 1.532238 GGCCTCCCTCCATTACCAC 59.468 63.158 0.00 0.00 0.00 4.16
2823 5210 1.696314 GGGCCTCCCTCCATTACCA 60.696 63.158 0.84 0.00 41.34 3.25
2824 5211 3.251891 GGGCCTCCCTCCATTACC 58.748 66.667 0.84 0.00 41.34 2.85
2833 5220 3.568578 CCTGACATAGGGCCTCCC 58.431 66.667 10.74 0.00 45.90 4.30
2875 5262 1.150536 GCCACCACTTCCACCTGAA 59.849 57.895 0.00 0.00 0.00 3.02
2888 5275 2.128771 ACCACATCATTACTGCCACC 57.871 50.000 0.00 0.00 0.00 4.61
2897 5284 3.203040 CCTCCCTCCTTTACCACATCATT 59.797 47.826 0.00 0.00 0.00 2.57
2910 5297 3.602030 ACACCGGACCTCCCTCCT 61.602 66.667 9.46 0.00 0.00 3.69
2929 5316 2.590092 CCCTCACCAACGGATCCC 59.410 66.667 6.06 0.00 0.00 3.85
2971 5358 6.575942 CGCAAACGTAAATAATATTACTGCCC 59.424 38.462 0.00 0.00 33.96 5.36
3122 7262 6.350103 CCTCATTCTTACCTTCTTACCTTCC 58.650 44.000 0.00 0.00 0.00 3.46
3123 7263 5.818336 GCCTCATTCTTACCTTCTTACCTTC 59.182 44.000 0.00 0.00 0.00 3.46
3124 7264 5.339282 GGCCTCATTCTTACCTTCTTACCTT 60.339 44.000 0.00 0.00 0.00 3.50
3125 7265 4.164413 GGCCTCATTCTTACCTTCTTACCT 59.836 45.833 0.00 0.00 0.00 3.08
3126 7266 4.080526 TGGCCTCATTCTTACCTTCTTACC 60.081 45.833 3.32 0.00 0.00 2.85
3127 7267 5.099042 TGGCCTCATTCTTACCTTCTTAC 57.901 43.478 3.32 0.00 0.00 2.34
3128 7268 5.428457 TCATGGCCTCATTCTTACCTTCTTA 59.572 40.000 3.32 0.00 0.00 2.10
3129 7269 4.228210 TCATGGCCTCATTCTTACCTTCTT 59.772 41.667 3.32 0.00 0.00 2.52
3130 7270 3.782523 TCATGGCCTCATTCTTACCTTCT 59.217 43.478 3.32 0.00 0.00 2.85
3131 7271 4.156455 TCATGGCCTCATTCTTACCTTC 57.844 45.455 3.32 0.00 0.00 3.46
3132 7272 4.530875 CTTCATGGCCTCATTCTTACCTT 58.469 43.478 3.32 0.00 0.00 3.50
3133 7273 3.117738 CCTTCATGGCCTCATTCTTACCT 60.118 47.826 3.32 0.00 0.00 3.08
3134 7274 3.217626 CCTTCATGGCCTCATTCTTACC 58.782 50.000 3.32 0.00 0.00 2.85
3135 7275 3.891049 ACCTTCATGGCCTCATTCTTAC 58.109 45.455 3.32 0.00 40.22 2.34
3136 7276 5.428457 TCTTACCTTCATGGCCTCATTCTTA 59.572 40.000 3.32 0.00 40.22 2.10
3137 7277 4.228210 TCTTACCTTCATGGCCTCATTCTT 59.772 41.667 3.32 0.00 40.22 2.52
3138 7278 3.782523 TCTTACCTTCATGGCCTCATTCT 59.217 43.478 3.32 0.00 40.22 2.40
3139 7279 4.156455 TCTTACCTTCATGGCCTCATTC 57.844 45.455 3.32 0.00 40.22 2.67
3140 7280 4.530875 CTTCTTACCTTCATGGCCTCATT 58.469 43.478 3.32 0.00 40.22 2.57
3141 7281 3.117738 CCTTCTTACCTTCATGGCCTCAT 60.118 47.826 3.32 0.00 40.22 2.90
3142 7282 2.239654 CCTTCTTACCTTCATGGCCTCA 59.760 50.000 3.32 0.00 40.22 3.86
3143 7283 2.239907 ACCTTCTTACCTTCATGGCCTC 59.760 50.000 3.32 0.00 40.22 4.70
3144 7284 2.279173 ACCTTCTTACCTTCATGGCCT 58.721 47.619 3.32 0.00 40.22 5.19
3145 7285 2.808906 ACCTTCTTACCTTCATGGCC 57.191 50.000 0.00 0.00 40.22 5.36
3146 7286 5.099042 TCTTACCTTCTTACCTTCATGGC 57.901 43.478 0.00 0.00 40.22 4.40
3147 7287 7.338710 TCATTCTTACCTTCTTACCTTCATGG 58.661 38.462 0.00 0.00 42.93 3.66
3148 7288 7.497249 CCTCATTCTTACCTTCTTACCTTCATG 59.503 40.741 0.00 0.00 0.00 3.07
3149 7289 7.569240 CCTCATTCTTACCTTCTTACCTTCAT 58.431 38.462 0.00 0.00 0.00 2.57
3150 7290 6.576442 GCCTCATTCTTACCTTCTTACCTTCA 60.576 42.308 0.00 0.00 0.00 3.02
3151 7291 5.818336 GCCTCATTCTTACCTTCTTACCTTC 59.182 44.000 0.00 0.00 0.00 3.46
3152 7292 5.339282 GGCCTCATTCTTACCTTCTTACCTT 60.339 44.000 0.00 0.00 0.00 3.50
3153 7293 4.164413 GGCCTCATTCTTACCTTCTTACCT 59.836 45.833 0.00 0.00 0.00 3.08
3154 7294 4.080526 TGGCCTCATTCTTACCTTCTTACC 60.081 45.833 3.32 0.00 0.00 2.85
3155 7295 5.099042 TGGCCTCATTCTTACCTTCTTAC 57.901 43.478 3.32 0.00 0.00 2.34
3156 7296 5.428457 TCATGGCCTCATTCTTACCTTCTTA 59.572 40.000 3.32 0.00 0.00 2.10
3157 7297 4.228210 TCATGGCCTCATTCTTACCTTCTT 59.772 41.667 3.32 0.00 0.00 2.52
3203 7343 9.302345 AGTAAACATGTCGATGTGATAAGTAAG 57.698 33.333 0.00 0.00 42.30 2.34
3320 7493 8.644374 TGATAGGTACTTTTACAAGCCAAAAT 57.356 30.769 0.00 0.00 41.75 1.82
3400 7589 1.347243 AATAATACCGCCCCGTGGGT 61.347 55.000 3.83 0.66 46.51 4.51
3411 7604 3.194861 TGTCACGCAGCTGAATAATACC 58.805 45.455 20.43 0.00 0.00 2.73
3467 7660 5.185249 AGTGTACCACCATATATAGCTTCCG 59.815 44.000 0.00 0.00 34.49 4.30
3486 7679 2.677836 GCATGAAAATGCCTCGAGTGTA 59.322 45.455 12.31 2.88 41.47 2.90
3488 7681 2.184385 GCATGAAAATGCCTCGAGTG 57.816 50.000 12.31 4.07 41.47 3.51
3564 7757 4.843984 CGCCATTCTTTGTTACTTACAACG 59.156 41.667 0.00 0.00 46.09 4.10
3586 7786 3.559238 AATTTTAGACAGGCAAGCACG 57.441 42.857 0.00 0.00 0.00 5.34
3624 7825 3.918912 TCCGAGGGGGTATACTATAGTGT 59.081 47.826 15.90 11.49 37.00 3.55
3638 7839 1.972872 CTCATTTTGGATCCGAGGGG 58.027 55.000 7.39 0.00 0.00 4.79
3644 7845 1.062587 CACGACGCTCATTTTGGATCC 59.937 52.381 4.20 4.20 0.00 3.36
3655 7856 1.123756 CGAACTAAAACCACGACGCTC 59.876 52.381 0.00 0.00 0.00 5.03
3658 7859 4.690731 TTTACGAACTAAAACCACGACG 57.309 40.909 0.00 0.00 0.00 5.12
3772 8000 1.129251 CAGTTGCTGCATCGGTAGTTG 59.871 52.381 1.84 0.00 0.00 3.16
3784 8012 1.974875 TGCAGATGGGCAGTTGCTG 60.975 57.895 3.88 0.00 39.25 4.41
3792 8020 0.657840 GTGAATACGTGCAGATGGGC 59.342 55.000 0.00 0.00 0.00 5.36
3808 8036 2.237143 CACCCTAATTCTGCTCAGGTGA 59.763 50.000 0.00 0.00 44.85 4.02
3809 8037 2.026822 ACACCCTAATTCTGCTCAGGTG 60.027 50.000 4.79 4.79 46.87 4.00
3810 8038 2.269940 ACACCCTAATTCTGCTCAGGT 58.730 47.619 0.00 0.00 0.00 4.00
3812 8040 5.734720 TCTTTACACCCTAATTCTGCTCAG 58.265 41.667 0.00 0.00 0.00 3.35
3813 8041 5.755409 TCTTTACACCCTAATTCTGCTCA 57.245 39.130 0.00 0.00 0.00 4.26
3814 8042 5.063564 CGTTCTTTACACCCTAATTCTGCTC 59.936 44.000 0.00 0.00 0.00 4.26
3841 8069 2.509336 ACGGCAGCAGATACGTGC 60.509 61.111 0.00 0.00 44.35 5.34
3843 8071 2.184322 CCACGGCAGCAGATACGT 59.816 61.111 0.00 0.00 40.60 3.57
3844 8072 3.264897 GCCACGGCAGCAGATACG 61.265 66.667 2.36 0.00 41.49 3.06
3845 8073 2.897350 GGCCACGGCAGCAGATAC 60.897 66.667 10.83 0.00 44.11 2.24
3846 8074 4.529219 CGGCCACGGCAGCAGATA 62.529 66.667 10.83 0.00 44.11 1.98
3859 8087 4.778143 ATGCACCCTTCGTCGGCC 62.778 66.667 0.00 0.00 0.00 6.13
3860 8088 3.195698 GATGCACCCTTCGTCGGC 61.196 66.667 0.00 0.00 0.00 5.54
3861 8089 1.811266 CTGATGCACCCTTCGTCGG 60.811 63.158 0.00 0.00 0.00 4.79
3862 8090 1.811266 CCTGATGCACCCTTCGTCG 60.811 63.158 0.00 0.00 0.00 5.12
3863 8091 1.450312 CCCTGATGCACCCTTCGTC 60.450 63.158 0.00 0.00 0.00 4.20
3864 8092 2.671070 CCCTGATGCACCCTTCGT 59.329 61.111 0.00 0.00 0.00 3.85
3865 8093 1.971505 TAGCCCTGATGCACCCTTCG 61.972 60.000 0.00 0.00 0.00 3.79
3866 8094 0.475906 ATAGCCCTGATGCACCCTTC 59.524 55.000 0.00 0.00 0.00 3.46
3867 8095 0.184451 CATAGCCCTGATGCACCCTT 59.816 55.000 0.00 0.00 0.00 3.95
3868 8096 1.713005 CCATAGCCCTGATGCACCCT 61.713 60.000 0.00 0.00 0.00 4.34
3869 8097 1.228367 CCATAGCCCTGATGCACCC 60.228 63.158 0.00 0.00 0.00 4.61
3870 8098 0.183492 TTCCATAGCCCTGATGCACC 59.817 55.000 0.00 0.00 0.00 5.01
3871 8099 1.602311 CTTCCATAGCCCTGATGCAC 58.398 55.000 0.00 0.00 0.00 4.57
3872 8100 0.179009 GCTTCCATAGCCCTGATGCA 60.179 55.000 0.00 0.00 44.48 3.96
3873 8101 2.638744 GCTTCCATAGCCCTGATGC 58.361 57.895 0.00 0.00 44.48 3.91
3894 8122 5.783100 TTATTGGTTTCGTCAACGGATAC 57.217 39.130 2.31 0.00 40.29 2.24
3895 8123 5.232626 CGATTATTGGTTTCGTCAACGGATA 59.767 40.000 2.31 0.00 40.29 2.59
3896 8124 4.033587 CGATTATTGGTTTCGTCAACGGAT 59.966 41.667 2.31 0.00 40.29 4.18
3897 8125 3.368539 CGATTATTGGTTTCGTCAACGGA 59.631 43.478 2.31 0.00 40.29 4.69
3898 8126 3.123959 ACGATTATTGGTTTCGTCAACGG 59.876 43.478 2.31 0.00 41.93 4.44
3899 8127 4.316375 ACGATTATTGGTTTCGTCAACG 57.684 40.909 0.00 0.00 41.93 4.10
3905 8133 5.478233 TCCATTGACGATTATTGGTTTCG 57.522 39.130 0.00 0.00 38.76 3.46
3906 8134 5.687285 GCATCCATTGACGATTATTGGTTTC 59.313 40.000 0.00 0.00 0.00 2.78
3907 8135 5.360714 AGCATCCATTGACGATTATTGGTTT 59.639 36.000 0.00 0.00 0.00 3.27
3908 8136 4.889409 AGCATCCATTGACGATTATTGGTT 59.111 37.500 0.00 0.00 0.00 3.67
3909 8137 4.464008 AGCATCCATTGACGATTATTGGT 58.536 39.130 0.00 0.00 0.00 3.67
3910 8138 5.039480 GAGCATCCATTGACGATTATTGG 57.961 43.478 0.00 0.00 0.00 3.16
3926 8154 0.807667 CACCACGTAGCAGGAGCATC 60.808 60.000 0.00 0.00 45.49 3.91
3927 8155 1.219124 CACCACGTAGCAGGAGCAT 59.781 57.895 0.00 0.00 45.49 3.79
3928 8156 1.877576 CTCACCACGTAGCAGGAGCA 61.878 60.000 0.00 0.00 45.49 4.26
3929 8157 1.153745 CTCACCACGTAGCAGGAGC 60.154 63.158 0.00 0.00 42.56 4.70
3930 8158 1.153745 GCTCACCACGTAGCAGGAG 60.154 63.158 3.18 0.00 38.63 3.69
3931 8159 2.646175 GGCTCACCACGTAGCAGGA 61.646 63.158 10.05 0.00 40.61 3.86
3932 8160 2.125512 GGCTCACCACGTAGCAGG 60.126 66.667 10.05 0.00 40.61 4.85
3933 8161 2.125512 GGGCTCACCACGTAGCAG 60.126 66.667 10.05 0.00 40.61 4.24
3934 8162 2.920384 TGGGCTCACCACGTAGCA 60.920 61.111 10.05 0.00 46.80 3.49
3942 8170 5.248477 TGTTATAGAGGATAATGGGCTCACC 59.752 44.000 0.00 0.00 40.81 4.02
3943 8171 6.014156 AGTGTTATAGAGGATAATGGGCTCAC 60.014 42.308 0.00 0.00 32.57 3.51
3944 8172 6.084738 AGTGTTATAGAGGATAATGGGCTCA 58.915 40.000 0.00 0.00 32.57 4.26
3945 8173 6.613153 AGTGTTATAGAGGATAATGGGCTC 57.387 41.667 0.00 0.00 32.57 4.70
3946 8174 7.735321 ACTTAGTGTTATAGAGGATAATGGGCT 59.265 37.037 0.00 0.00 32.57 5.19
3947 8175 7.908453 ACTTAGTGTTATAGAGGATAATGGGC 58.092 38.462 0.00 0.00 32.57 5.36
3948 8176 9.930693 GAACTTAGTGTTATAGAGGATAATGGG 57.069 37.037 0.00 0.00 39.30 4.00
3949 8177 9.930693 GGAACTTAGTGTTATAGAGGATAATGG 57.069 37.037 0.00 0.00 39.30 3.16
3973 8201 9.983024 TGTATGTGGGATCTTTAAAATTAAGGA 57.017 29.630 0.95 0.95 34.00 3.36
3980 8208 8.748412 CCTGAATTGTATGTGGGATCTTTAAAA 58.252 33.333 0.00 0.00 0.00 1.52
3981 8209 7.893302 ACCTGAATTGTATGTGGGATCTTTAAA 59.107 33.333 0.00 0.00 0.00 1.52
3982 8210 7.410174 ACCTGAATTGTATGTGGGATCTTTAA 58.590 34.615 0.00 0.00 0.00 1.52
3983 8211 6.969043 ACCTGAATTGTATGTGGGATCTTTA 58.031 36.000 0.00 0.00 0.00 1.85
3984 8212 5.831103 ACCTGAATTGTATGTGGGATCTTT 58.169 37.500 0.00 0.00 0.00 2.52
3985 8213 5.192522 AGACCTGAATTGTATGTGGGATCTT 59.807 40.000 0.00 0.00 0.00 2.40
3986 8214 4.723789 AGACCTGAATTGTATGTGGGATCT 59.276 41.667 0.00 0.00 0.00 2.75
3987 8215 5.041191 AGACCTGAATTGTATGTGGGATC 57.959 43.478 0.00 0.00 0.00 3.36
3988 8216 4.474651 TGAGACCTGAATTGTATGTGGGAT 59.525 41.667 0.00 0.00 0.00 3.85
3989 8217 3.843619 TGAGACCTGAATTGTATGTGGGA 59.156 43.478 0.00 0.00 0.00 4.37
3990 8218 4.220693 TGAGACCTGAATTGTATGTGGG 57.779 45.455 0.00 0.00 0.00 4.61
3991 8219 6.375174 TCAATTGAGACCTGAATTGTATGTGG 59.625 38.462 17.17 0.00 42.26 4.17
3992 8220 7.381766 TCAATTGAGACCTGAATTGTATGTG 57.618 36.000 17.17 0.00 42.26 3.21
3993 8221 8.408043 TTTCAATTGAGACCTGAATTGTATGT 57.592 30.769 17.17 0.00 42.26 2.29
3994 8222 9.865321 AATTTCAATTGAGACCTGAATTGTATG 57.135 29.630 17.17 0.00 42.26 2.39
3995 8223 9.865321 CAATTTCAATTGAGACCTGAATTGTAT 57.135 29.630 21.94 11.40 46.72 2.29
3996 8224 8.306038 CCAATTTCAATTGAGACCTGAATTGTA 58.694 33.333 25.12 8.74 46.72 2.41
3997 8225 7.015487 TCCAATTTCAATTGAGACCTGAATTGT 59.985 33.333 25.12 4.47 46.72 2.71
3998 8226 7.380536 TCCAATTTCAATTGAGACCTGAATTG 58.619 34.615 22.68 22.68 46.72 2.32
3999 8227 7.543359 TCCAATTTCAATTGAGACCTGAATT 57.457 32.000 12.93 7.82 46.72 2.17
4000 8228 7.398047 TGATCCAATTTCAATTGAGACCTGAAT 59.602 33.333 12.93 1.75 46.72 2.57
4001 8229 6.720748 TGATCCAATTTCAATTGAGACCTGAA 59.279 34.615 12.93 0.00 46.72 3.02
4002 8230 6.247676 TGATCCAATTTCAATTGAGACCTGA 58.752 36.000 12.93 5.07 46.72 3.86
4003 8231 6.519679 TGATCCAATTTCAATTGAGACCTG 57.480 37.500 12.93 5.71 46.72 4.00
4004 8232 6.494491 TGTTGATCCAATTTCAATTGAGACCT 59.506 34.615 12.93 0.00 46.72 3.85
4005 8233 6.690530 TGTTGATCCAATTTCAATTGAGACC 58.309 36.000 12.93 0.00 46.72 3.85
4006 8234 8.767478 ATTGTTGATCCAATTTCAATTGAGAC 57.233 30.769 12.93 5.20 46.72 3.36
4007 8235 9.781633 AAATTGTTGATCCAATTTCAATTGAGA 57.218 25.926 12.93 4.49 46.73 3.27
4060 8288 9.326413 GGAAGCATAGTGTGTATAGTACAAAAT 57.674 33.333 0.00 0.00 40.93 1.82
4061 8289 8.537016 AGGAAGCATAGTGTGTATAGTACAAAA 58.463 33.333 0.00 0.00 40.93 2.44
4062 8290 8.074613 AGGAAGCATAGTGTGTATAGTACAAA 57.925 34.615 0.00 0.00 40.93 2.83
4063 8291 7.655521 AGGAAGCATAGTGTGTATAGTACAA 57.344 36.000 0.00 0.00 40.93 2.41
4064 8292 8.756486 TTAGGAAGCATAGTGTGTATAGTACA 57.244 34.615 0.00 0.00 36.08 2.90
4072 8300 9.561069 CCTTATAAATTAGGAAGCATAGTGTGT 57.439 33.333 0.00 0.00 33.13 3.72
4073 8301 9.561069 ACCTTATAAATTAGGAAGCATAGTGTG 57.439 33.333 2.14 0.00 35.45 3.82
4074 8302 9.780186 GACCTTATAAATTAGGAAGCATAGTGT 57.220 33.333 2.14 0.00 35.45 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.