Multiple sequence alignment - TraesCS6A01G112300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G112300 chr6A 100.000 4674 0 0 1 4674 81193237 81188564 0.000000e+00 8632.0
1 TraesCS6A01G112300 chr6A 82.542 1495 205 27 1278 2728 83435061 83436543 0.000000e+00 1264.0
2 TraesCS6A01G112300 chr6A 79.832 1785 283 44 1278 3010 83599529 83601288 0.000000e+00 1230.0
3 TraesCS6A01G112300 chr6A 79.799 1787 248 53 1301 2992 83644575 83646343 0.000000e+00 1195.0
4 TraesCS6A01G112300 chr6D 91.575 3656 175 52 142 3743 63818386 63814810 0.000000e+00 4922.0
5 TraesCS6A01G112300 chr6D 91.715 2426 112 37 142 2538 63927675 63925310 0.000000e+00 3284.0
6 TraesCS6A01G112300 chr6D 83.040 1421 197 25 1278 2664 65051667 65053077 0.000000e+00 1249.0
7 TraesCS6A01G112300 chr6D 80.056 1790 270 49 1281 3010 65343416 65341654 0.000000e+00 1247.0
8 TraesCS6A01G112300 chr6D 82.647 1458 192 30 1281 2689 65361062 65359617 0.000000e+00 1234.0
9 TraesCS6A01G112300 chr6D 81.718 1362 196 31 1281 2599 65095150 65093799 0.000000e+00 1086.0
10 TraesCS6A01G112300 chr6D 93.968 630 36 2 4046 4674 63805255 63804627 0.000000e+00 952.0
11 TraesCS6A01G112300 chr6D 90.152 132 3 1 6 137 63818547 63818426 3.740000e-36 163.0
12 TraesCS6A01G112300 chr6D 89.394 132 4 1 6 137 63927836 63927715 1.740000e-34 158.0
13 TraesCS6A01G112300 chr6D 96.875 32 1 0 2933 2964 63756097 63756066 2.000000e-03 54.7
14 TraesCS6A01G112300 chr6B 83.287 1454 188 24 1281 2689 140367263 140365820 0.000000e+00 1288.0
15 TraesCS6A01G112300 chr6B 79.754 1788 280 46 1281 3010 140333500 140331737 0.000000e+00 1221.0
16 TraesCS6A01G112300 chr6B 81.575 1270 183 30 1281 2512 140097415 140096159 0.000000e+00 1002.0
17 TraesCS6A01G112300 chr6B 94.406 286 16 0 4389 4674 137558116 137557831 1.540000e-119 440.0
18 TraesCS6A01G112300 chr6B 76.218 513 81 24 2526 2998 140094952 140094441 2.810000e-57 233.0
19 TraesCS6A01G112300 chr5B 78.876 890 158 19 2130 2998 261675957 261675077 4.060000e-160 575.0
20 TraesCS6A01G112300 chr5B 80.191 732 112 16 1382 2098 261676765 261676052 6.930000e-143 518.0
21 TraesCS6A01G112300 chr7D 79.866 447 88 2 4229 4674 69810400 69810845 4.510000e-85 326.0
22 TraesCS6A01G112300 chr7D 79.249 453 90 4 4224 4674 69781248 69781698 3.510000e-81 313.0
23 TraesCS6A01G112300 chr7D 79.249 453 90 4 4224 4674 69804943 69805393 3.510000e-81 313.0
24 TraesCS6A01G112300 chr7A 79.773 440 87 2 4236 4674 76355070 76355508 7.550000e-83 318.0
25 TraesCS6A01G112300 chr7A 79.418 447 90 2 4229 4674 76398119 76398564 9.760000e-82 315.0
26 TraesCS6A01G112300 chr7A 79.195 447 91 2 4229 4674 76424815 76425260 4.540000e-80 309.0
27 TraesCS6A01G112300 chr7B 78.808 453 94 2 4223 4674 12380310 12380761 2.110000e-78 303.0
28 TraesCS6A01G112300 chr5D 83.412 211 20 9 640 840 537966433 537966228 1.030000e-41 182.0
29 TraesCS6A01G112300 chr4A 83.333 210 22 6 640 840 632150911 632150706 1.030000e-41 182.0
30 TraesCS6A01G112300 chr4A 90.566 53 3 2 788 838 631381375 631381323 8.390000e-08 69.4
31 TraesCS6A01G112300 chr2D 86.538 52 6 1 790 840 68629857 68629806 6.530000e-04 56.5
32 TraesCS6A01G112300 chr2D 86.538 52 6 1 790 840 68675069 68675018 6.530000e-04 56.5
33 TraesCS6A01G112300 chr2D 87.500 48 5 1 794 840 68572115 68572068 2.000000e-03 54.7
34 TraesCS6A01G112300 chr2D 87.500 48 5 1 794 840 68595723 68595676 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G112300 chr6A 81188564 81193237 4673 True 8632.0 8632 100.0000 1 4674 1 chr6A.!!$R1 4673
1 TraesCS6A01G112300 chr6A 83435061 83436543 1482 False 1264.0 1264 82.5420 1278 2728 1 chr6A.!!$F1 1450
2 TraesCS6A01G112300 chr6A 83599529 83601288 1759 False 1230.0 1230 79.8320 1278 3010 1 chr6A.!!$F2 1732
3 TraesCS6A01G112300 chr6A 83644575 83646343 1768 False 1195.0 1195 79.7990 1301 2992 1 chr6A.!!$F3 1691
4 TraesCS6A01G112300 chr6D 63814810 63818547 3737 True 2542.5 4922 90.8635 6 3743 2 chr6D.!!$R6 3737
5 TraesCS6A01G112300 chr6D 63925310 63927836 2526 True 1721.0 3284 90.5545 6 2538 2 chr6D.!!$R7 2532
6 TraesCS6A01G112300 chr6D 65051667 65053077 1410 False 1249.0 1249 83.0400 1278 2664 1 chr6D.!!$F1 1386
7 TraesCS6A01G112300 chr6D 65341654 65343416 1762 True 1247.0 1247 80.0560 1281 3010 1 chr6D.!!$R4 1729
8 TraesCS6A01G112300 chr6D 65359617 65361062 1445 True 1234.0 1234 82.6470 1281 2689 1 chr6D.!!$R5 1408
9 TraesCS6A01G112300 chr6D 65093799 65095150 1351 True 1086.0 1086 81.7180 1281 2599 1 chr6D.!!$R3 1318
10 TraesCS6A01G112300 chr6D 63804627 63805255 628 True 952.0 952 93.9680 4046 4674 1 chr6D.!!$R2 628
11 TraesCS6A01G112300 chr6B 140365820 140367263 1443 True 1288.0 1288 83.2870 1281 2689 1 chr6B.!!$R3 1408
12 TraesCS6A01G112300 chr6B 140331737 140333500 1763 True 1221.0 1221 79.7540 1281 3010 1 chr6B.!!$R2 1729
13 TraesCS6A01G112300 chr6B 140094441 140097415 2974 True 617.5 1002 78.8965 1281 2998 2 chr6B.!!$R4 1717
14 TraesCS6A01G112300 chr5B 261675077 261676765 1688 True 546.5 575 79.5335 1382 2998 2 chr5B.!!$R1 1616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
385 428 0.380024 TGGTCACAAACATGTGCACG 59.620 50.000 13.13 0.65 39.49 5.34 F
762 805 2.589720 TGTTAACTCGTCCTCACCTCA 58.410 47.619 7.22 0.00 0.00 3.86 F
1496 1579 0.787084 TCCCTCACCTCCTCTGACTT 59.213 55.000 0.00 0.00 0.00 3.01 F
2870 4337 0.323178 CATGGGCTCTTCCAACTGCT 60.323 55.000 0.00 0.00 40.62 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 1460 1.132462 AGGCAGGAGATGATCAGGGAT 60.132 52.381 0.09 0.00 0.00 3.85 R
2004 2144 3.028366 GAAAAGGCCGAGCTCGTGC 62.028 63.158 32.41 30.91 37.74 5.34 R
3092 4568 0.765510 GGGTCCTCCACTGACAAGTT 59.234 55.000 0.00 0.00 32.98 2.66 R
3747 5264 0.036164 CACCGACATCCCCAACTGAA 59.964 55.000 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 0.953727 TGCAACAGCAGCCTAAACTG 59.046 50.000 0.00 0.00 40.80 3.16
81 82 1.238439 GCAACAGCAGCCTAAACTGA 58.762 50.000 0.00 0.00 40.25 3.41
82 83 1.198637 GCAACAGCAGCCTAAACTGAG 59.801 52.381 0.00 0.00 40.25 3.35
83 84 2.498167 CAACAGCAGCCTAAACTGAGT 58.502 47.619 0.00 0.00 40.25 3.41
84 85 3.664107 CAACAGCAGCCTAAACTGAGTA 58.336 45.455 0.00 0.00 40.25 2.59
85 86 4.256920 CAACAGCAGCCTAAACTGAGTAT 58.743 43.478 0.00 0.00 40.25 2.12
86 87 5.419542 CAACAGCAGCCTAAACTGAGTATA 58.580 41.667 0.00 0.00 40.25 1.47
87 88 5.878406 ACAGCAGCCTAAACTGAGTATAT 57.122 39.130 0.00 0.00 40.25 0.86
88 89 6.978674 ACAGCAGCCTAAACTGAGTATATA 57.021 37.500 0.00 0.00 40.25 0.86
89 90 7.546250 ACAGCAGCCTAAACTGAGTATATAT 57.454 36.000 0.00 0.00 40.25 0.86
137 138 5.167303 AGAAGTTAAGAGGTTGATGGGTC 57.833 43.478 0.00 0.00 0.00 4.46
138 139 4.846940 AGAAGTTAAGAGGTTGATGGGTCT 59.153 41.667 0.00 0.00 0.00 3.85
139 140 4.559862 AGTTAAGAGGTTGATGGGTCTG 57.440 45.455 0.00 0.00 0.00 3.51
140 141 3.010420 GTTAAGAGGTTGATGGGTCTGC 58.990 50.000 0.00 0.00 0.00 4.26
183 219 4.899352 AATGTGCTCTCAAGGAAGTAGT 57.101 40.909 0.00 0.00 0.00 2.73
191 227 6.037726 GCTCTCAAGGAAGTAGTTAACTAGC 58.962 44.000 15.68 8.94 37.50 3.42
196 232 9.220767 CTCAAGGAAGTAGTTAACTAGCATTTT 57.779 33.333 15.68 5.84 37.50 1.82
231 273 4.510038 AAAAACATCAGTGCCTAGCAAG 57.490 40.909 0.00 0.00 41.47 4.01
232 274 2.867109 AACATCAGTGCCTAGCAAGT 57.133 45.000 0.00 0.00 41.47 3.16
233 275 2.105006 ACATCAGTGCCTAGCAAGTG 57.895 50.000 0.00 0.00 41.47 3.16
234 276 0.731417 CATCAGTGCCTAGCAAGTGC 59.269 55.000 0.00 0.00 41.47 4.40
250 292 4.093556 GCAAGTGCCTAGTCTGTTTGATAC 59.906 45.833 0.00 0.00 34.31 2.24
280 322 1.089920 CAGTAGTGCATGCCAAGGTC 58.910 55.000 16.68 0.97 0.00 3.85
294 336 7.671302 CATGCCAAGGTCAAGTATATACTACT 58.329 38.462 15.74 9.11 34.99 2.57
357 400 5.995897 GCTTTCCTTTGTACCTCTGTTCTTA 59.004 40.000 0.00 0.00 0.00 2.10
359 402 7.148390 GCTTTCCTTTGTACCTCTGTTCTTATC 60.148 40.741 0.00 0.00 0.00 1.75
362 405 7.974504 TCCTTTGTACCTCTGTTCTTATCTTT 58.025 34.615 0.00 0.00 0.00 2.52
376 419 8.188139 TGTTCTTATCTTTTCTTGGTCACAAAC 58.812 33.333 0.00 0.00 35.89 2.93
377 420 7.873719 TCTTATCTTTTCTTGGTCACAAACA 57.126 32.000 0.00 0.00 35.89 2.83
378 421 8.463930 TCTTATCTTTTCTTGGTCACAAACAT 57.536 30.769 0.00 0.00 35.89 2.71
379 422 8.352201 TCTTATCTTTTCTTGGTCACAAACATG 58.648 33.333 0.00 0.00 35.89 3.21
380 423 5.913137 TCTTTTCTTGGTCACAAACATGT 57.087 34.783 0.00 0.00 35.89 3.21
381 424 5.649557 TCTTTTCTTGGTCACAAACATGTG 58.350 37.500 0.00 2.60 40.90 3.21
382 425 3.435105 TTCTTGGTCACAAACATGTGC 57.565 42.857 0.00 0.49 39.49 4.57
383 426 2.373224 TCTTGGTCACAAACATGTGCA 58.627 42.857 0.00 0.00 39.49 4.57
384 427 2.098934 TCTTGGTCACAAACATGTGCAC 59.901 45.455 10.75 10.75 39.49 4.57
385 428 0.380024 TGGTCACAAACATGTGCACG 59.620 50.000 13.13 0.65 39.49 5.34
448 491 7.930513 TGTAAATCTTGATAGTAGTCGCATG 57.069 36.000 0.00 0.00 0.00 4.06
454 497 6.582636 TCTTGATAGTAGTCGCATGGAAAAT 58.417 36.000 0.00 0.00 0.00 1.82
520 563 7.591006 AAGAAGCAAGCATTTTACATTGATG 57.409 32.000 0.00 0.00 0.00 3.07
561 604 4.997565 TGGTGAAAGAAACTTTTCTGCTG 58.002 39.130 4.99 0.00 46.22 4.41
562 605 4.142182 TGGTGAAAGAAACTTTTCTGCTGG 60.142 41.667 4.99 0.00 46.22 4.85
599 642 6.262273 TGTGTTACCATCTCTTCCAAGTTTTC 59.738 38.462 0.00 0.00 0.00 2.29
652 695 8.940397 TTTTTGAAGGTCCTAATTCTCAGATT 57.060 30.769 0.00 0.00 0.00 2.40
653 696 7.928307 TTTGAAGGTCCTAATTCTCAGATTG 57.072 36.000 0.00 0.00 0.00 2.67
654 697 5.994250 TGAAGGTCCTAATTCTCAGATTGG 58.006 41.667 0.00 0.00 0.00 3.16
655 698 5.488919 TGAAGGTCCTAATTCTCAGATTGGT 59.511 40.000 0.00 0.00 0.00 3.67
656 699 6.672218 TGAAGGTCCTAATTCTCAGATTGGTA 59.328 38.462 0.00 0.00 0.00 3.25
657 700 6.739331 AGGTCCTAATTCTCAGATTGGTAG 57.261 41.667 0.00 0.00 0.00 3.18
675 718 9.916397 GATTGGTAGTATTAAACATCTTGTTCG 57.084 33.333 0.00 0.00 40.14 3.95
716 759 3.799420 GTCGAATAGTGGCAGCTTAAGAG 59.201 47.826 6.67 0.00 0.00 2.85
762 805 2.589720 TGTTAACTCGTCCTCACCTCA 58.410 47.619 7.22 0.00 0.00 3.86
1007 1051 4.342951 CCATGTAGATTTGGGCATGTTCAT 59.657 41.667 0.00 0.00 37.57 2.57
1187 1231 9.273016 TGGAGTACTATCTTATTAGCAAATTGC 57.727 33.333 10.41 10.41 45.46 3.56
1215 1259 3.884037 AACCAGTCCCATTTCTTCAGT 57.116 42.857 0.00 0.00 0.00 3.41
1322 1378 4.904251 TGGAGGAGGAGGAGAATTTATGAG 59.096 45.833 0.00 0.00 0.00 2.90
1496 1579 0.787084 TCCCTCACCTCCTCTGACTT 59.213 55.000 0.00 0.00 0.00 3.01
1682 1804 2.504244 GCTCCTTGTCGACGACGG 60.504 66.667 22.06 17.70 40.21 4.79
1962 2102 5.163258 CCTCTACATAGGCATCTGGAACTTT 60.163 44.000 0.00 0.00 0.00 2.66
2004 2144 2.676471 CCCGCCTTCCCAAACCTG 60.676 66.667 0.00 0.00 0.00 4.00
2741 4204 7.497579 TGTTCTTGCACTTCTAATTGTACTTGA 59.502 33.333 0.00 0.00 0.00 3.02
2777 4241 6.989169 AGGATTGATATGCTAGAAACTGACAC 59.011 38.462 0.00 0.00 29.68 3.67
2822 4289 1.126488 TCCATCCTGGTCAGCTGATC 58.874 55.000 21.47 20.98 39.03 2.92
2840 4307 2.825836 GGGGCGATTGTGCTGAGG 60.826 66.667 0.00 0.00 34.52 3.86
2870 4337 0.323178 CATGGGCTCTTCCAACTGCT 60.323 55.000 0.00 0.00 40.62 4.24
2881 4351 4.285517 TCTTCCAACTGCTTCTCTCATCTT 59.714 41.667 0.00 0.00 0.00 2.40
3037 4513 1.001641 ATCAGGTGGAAGCAGTGGC 60.002 57.895 0.00 0.00 41.61 5.01
3046 4522 1.209504 GGAAGCAGTGGCAGTGGTATA 59.790 52.381 25.70 0.00 44.61 1.47
3062 4538 0.840617 TATATCTGTTTGCCCCGCCA 59.159 50.000 0.00 0.00 0.00 5.69
3092 4568 1.300971 GAGCTTTCAGCACGCCATCA 61.301 55.000 0.00 0.00 45.56 3.07
3112 4588 1.128188 ACTTGTCAGTGGAGGACCCC 61.128 60.000 0.00 0.00 34.36 4.95
3200 4676 3.575805 AGTTTGGGTTGTTGATGATGGT 58.424 40.909 0.00 0.00 0.00 3.55
3201 4677 3.966665 AGTTTGGGTTGTTGATGATGGTT 59.033 39.130 0.00 0.00 0.00 3.67
3257 4733 3.149196 ACTTTACTGTGCCAAGGATGTG 58.851 45.455 0.00 0.00 0.00 3.21
3283 4759 4.096382 AGCTACCTGTTCATAATTTTGCGG 59.904 41.667 0.00 0.00 0.00 5.69
3350 4826 3.772025 CACTCTTGAGTTCTCTATGGGGT 59.228 47.826 0.00 0.00 0.00 4.95
3355 4831 2.838202 TGAGTTCTCTATGGGGTTGACC 59.162 50.000 1.53 0.00 39.11 4.02
3370 4846 5.163088 GGGGTTGACCATTAGGATTATGAGT 60.163 44.000 2.12 0.00 42.91 3.41
3375 4851 5.665360 TGACCATTAGGATTATGAGTGTGGA 59.335 40.000 0.00 0.00 38.69 4.02
3386 4862 1.071699 TGAGTGTGGAAGTACCTTGGC 59.928 52.381 0.00 0.00 39.86 4.52
3436 4913 3.564225 GGTAAAAGACCTATTGGCATCCG 59.436 47.826 0.00 0.00 45.89 4.18
3490 4967 3.840890 TCACGTTTGTTCTTTTGCTGT 57.159 38.095 0.00 0.00 0.00 4.40
3493 4970 5.700846 TCACGTTTGTTCTTTTGCTGTTAA 58.299 33.333 0.00 0.00 0.00 2.01
3494 4971 5.797934 TCACGTTTGTTCTTTTGCTGTTAAG 59.202 36.000 0.00 0.00 0.00 1.85
3495 4972 5.571357 CACGTTTGTTCTTTTGCTGTTAAGT 59.429 36.000 0.00 0.00 0.00 2.24
3497 4974 6.307077 ACGTTTGTTCTTTTGCTGTTAAGTTC 59.693 34.615 0.00 0.00 0.00 3.01
3500 4977 9.296400 GTTTGTTCTTTTGCTGTTAAGTTCATA 57.704 29.630 0.00 0.00 0.00 2.15
3501 4978 9.515020 TTTGTTCTTTTGCTGTTAAGTTCATAG 57.485 29.630 0.00 0.00 0.00 2.23
3502 4979 7.138736 TGTTCTTTTGCTGTTAAGTTCATAGC 58.861 34.615 0.00 0.00 35.06 2.97
3503 4980 7.013274 TGTTCTTTTGCTGTTAAGTTCATAGCT 59.987 33.333 7.24 0.00 35.50 3.32
3504 4981 7.510549 TCTTTTGCTGTTAAGTTCATAGCTT 57.489 32.000 7.24 0.00 35.50 3.74
3505 4982 7.362662 TCTTTTGCTGTTAAGTTCATAGCTTG 58.637 34.615 7.24 0.00 35.50 4.01
3506 4983 4.685169 TGCTGTTAAGTTCATAGCTTGC 57.315 40.909 7.24 0.00 35.50 4.01
3507 4984 3.440173 TGCTGTTAAGTTCATAGCTTGCC 59.560 43.478 7.24 0.00 35.50 4.52
3508 4985 3.691609 GCTGTTAAGTTCATAGCTTGCCT 59.308 43.478 0.00 0.00 0.00 4.75
3509 4986 4.876107 GCTGTTAAGTTCATAGCTTGCCTA 59.124 41.667 0.00 0.00 0.00 3.93
3513 4990 6.594159 TGTTAAGTTCATAGCTTGCCTAGTTC 59.406 38.462 0.00 0.00 0.00 3.01
3517 4994 3.107601 TCATAGCTTGCCTAGTTCCTGT 58.892 45.455 0.00 0.00 0.00 4.00
3522 4999 2.945668 GCTTGCCTAGTTCCTGTAATGG 59.054 50.000 0.00 0.00 0.00 3.16
3529 5006 5.396884 GCCTAGTTCCTGTAATGGAATCTGT 60.397 44.000 0.00 0.00 46.36 3.41
3538 5046 3.863142 AATGGAATCTGTTTCAGCTGC 57.137 42.857 9.47 0.00 35.94 5.25
3543 5051 0.035317 ATCTGTTTCAGCTGCGTGGA 59.965 50.000 9.47 3.85 0.00 4.02
3572 5080 2.137810 TTTAGCCCTATGCACAACCC 57.862 50.000 0.00 0.00 44.83 4.11
3573 5081 1.295020 TTAGCCCTATGCACAACCCT 58.705 50.000 0.00 0.00 44.83 4.34
3575 5083 1.000896 GCCCTATGCACAACCCTGT 60.001 57.895 0.00 0.00 40.77 4.00
3577 5085 0.327924 CCCTATGCACAACCCTGTCA 59.672 55.000 0.00 0.00 31.64 3.58
3600 5108 2.605837 TTCGGTTTGTAGACACTGCA 57.394 45.000 0.00 0.00 0.00 4.41
3601 5109 2.148916 TCGGTTTGTAGACACTGCAG 57.851 50.000 13.48 13.48 0.00 4.41
3602 5110 1.411246 TCGGTTTGTAGACACTGCAGT 59.589 47.619 15.25 15.25 0.00 4.40
3603 5111 1.792949 CGGTTTGTAGACACTGCAGTC 59.207 52.381 18.64 7.25 38.81 3.51
3618 5126 2.089980 GCAGTCTGCAGATCCATTTGT 58.910 47.619 21.47 0.00 44.26 2.83
3622 5130 2.615912 GTCTGCAGATCCATTTGTAGCC 59.384 50.000 21.47 0.00 0.00 3.93
3625 5133 3.018856 TGCAGATCCATTTGTAGCCAAG 58.981 45.455 0.00 0.00 0.00 3.61
3628 5136 4.439289 GCAGATCCATTTGTAGCCAAGTTC 60.439 45.833 0.00 0.00 0.00 3.01
3630 5138 3.806949 TCCATTTGTAGCCAAGTTCCT 57.193 42.857 0.00 0.00 0.00 3.36
3635 5143 5.464168 CATTTGTAGCCAAGTTCCTTCTTG 58.536 41.667 0.00 0.00 42.86 3.02
3641 5149 1.882623 CCAAGTTCCTTCTTGAGGCAC 59.117 52.381 7.83 0.00 45.87 5.01
3653 5161 0.981183 TGAGGCACGAAGGGTTATGT 59.019 50.000 0.00 0.00 0.00 2.29
3654 5162 1.066430 TGAGGCACGAAGGGTTATGTC 60.066 52.381 0.00 0.00 0.00 3.06
3687 5196 6.200878 TCTGAAGAAACTTGGGTATCCTTT 57.799 37.500 0.00 0.00 0.00 3.11
3690 5199 5.010617 TGAAGAAACTTGGGTATCCTTTTGC 59.989 40.000 0.00 0.00 0.00 3.68
3707 5216 1.317431 TGCAGTGCAATGGCTGATCC 61.317 55.000 17.26 0.00 41.91 3.36
3717 5234 1.953559 TGGCTGATCCGATAACAAGC 58.046 50.000 0.00 0.00 37.80 4.01
3720 5237 1.599542 GCTGATCCGATAACAAGCCAC 59.400 52.381 0.00 0.00 0.00 5.01
3731 5248 2.561478 ACAAGCCACGTTTGAGGTAT 57.439 45.000 5.50 0.00 0.00 2.73
3739 5256 3.122948 CCACGTTTGAGGTATCGAAACTG 59.877 47.826 0.00 0.00 30.40 3.16
3743 5260 4.651994 GTTTGAGGTATCGAAACTGCATG 58.348 43.478 0.00 0.00 30.40 4.06
3744 5261 3.885724 TGAGGTATCGAAACTGCATGA 57.114 42.857 0.00 0.00 0.00 3.07
3745 5262 4.406648 TGAGGTATCGAAACTGCATGAT 57.593 40.909 0.00 0.00 0.00 2.45
3746 5263 4.371786 TGAGGTATCGAAACTGCATGATC 58.628 43.478 0.00 0.00 0.00 2.92
3747 5264 4.100035 TGAGGTATCGAAACTGCATGATCT 59.900 41.667 0.00 0.00 0.00 2.75
3748 5265 5.028549 AGGTATCGAAACTGCATGATCTT 57.971 39.130 0.00 0.00 0.00 2.40
3749 5266 5.053145 AGGTATCGAAACTGCATGATCTTC 58.947 41.667 0.00 0.00 0.00 2.87
3750 5267 4.811024 GGTATCGAAACTGCATGATCTTCA 59.189 41.667 0.00 0.00 0.00 3.02
3751 5268 5.050499 GGTATCGAAACTGCATGATCTTCAG 60.050 44.000 0.00 0.00 0.00 3.02
3752 5269 3.930336 TCGAAACTGCATGATCTTCAGT 58.070 40.909 0.00 8.56 42.28 3.41
3754 5271 4.152938 TCGAAACTGCATGATCTTCAGTTG 59.847 41.667 20.32 13.11 46.63 3.16
3755 5272 4.670992 CGAAACTGCATGATCTTCAGTTGG 60.671 45.833 20.32 14.62 46.63 3.77
3756 5273 2.719739 ACTGCATGATCTTCAGTTGGG 58.280 47.619 0.00 0.00 37.78 4.12
3757 5274 2.022195 CTGCATGATCTTCAGTTGGGG 58.978 52.381 0.00 0.00 0.00 4.96
3758 5275 1.634973 TGCATGATCTTCAGTTGGGGA 59.365 47.619 0.00 0.00 0.00 4.81
3759 5276 2.242965 TGCATGATCTTCAGTTGGGGAT 59.757 45.455 0.00 0.00 0.00 3.85
3760 5277 2.621998 GCATGATCTTCAGTTGGGGATG 59.378 50.000 0.00 0.00 0.00 3.51
3761 5278 3.894759 CATGATCTTCAGTTGGGGATGT 58.105 45.455 0.00 0.00 0.00 3.06
3762 5279 3.634397 TGATCTTCAGTTGGGGATGTC 57.366 47.619 0.00 0.00 0.00 3.06
3763 5280 2.093500 TGATCTTCAGTTGGGGATGTCG 60.093 50.000 0.00 0.00 0.00 4.35
3764 5281 0.613260 TCTTCAGTTGGGGATGTCGG 59.387 55.000 0.00 0.00 0.00 4.79
3765 5282 0.324943 CTTCAGTTGGGGATGTCGGT 59.675 55.000 0.00 0.00 0.00 4.69
3766 5283 0.036164 TTCAGTTGGGGATGTCGGTG 59.964 55.000 0.00 0.00 0.00 4.94
3767 5284 2.040544 CAGTTGGGGATGTCGGTGC 61.041 63.158 0.00 0.00 0.00 5.01
3768 5285 2.224159 AGTTGGGGATGTCGGTGCT 61.224 57.895 0.00 0.00 0.00 4.40
3769 5286 1.303317 GTTGGGGATGTCGGTGCTT 60.303 57.895 0.00 0.00 0.00 3.91
3770 5287 1.303236 TTGGGGATGTCGGTGCTTG 60.303 57.895 0.00 0.00 0.00 4.01
3771 5288 3.134127 GGGGATGTCGGTGCTTGC 61.134 66.667 0.00 0.00 0.00 4.01
3772 5289 2.045926 GGGATGTCGGTGCTTGCT 60.046 61.111 0.00 0.00 0.00 3.91
3773 5290 2.401766 GGGATGTCGGTGCTTGCTG 61.402 63.158 0.00 0.00 0.00 4.41
3774 5291 2.401766 GGATGTCGGTGCTTGCTGG 61.402 63.158 0.00 0.00 0.00 4.85
3775 5292 3.044059 GATGTCGGTGCTTGCTGGC 62.044 63.158 0.00 0.00 0.00 4.85
3797 5314 3.687102 CCGTACAGGGCCGTGACA 61.687 66.667 31.22 15.51 35.97 3.58
3798 5315 2.126071 CGTACAGGGCCGTGACAG 60.126 66.667 31.22 16.58 0.00 3.51
3799 5316 2.434359 GTACAGGGCCGTGACAGC 60.434 66.667 31.22 13.63 0.00 4.40
3800 5317 4.063967 TACAGGGCCGTGACAGCG 62.064 66.667 31.22 4.45 0.00 5.18
3816 5333 3.197790 CGGTGGCTGGAGCGATTG 61.198 66.667 0.00 0.00 43.26 2.67
3817 5334 2.825836 GGTGGCTGGAGCGATTGG 60.826 66.667 0.00 0.00 43.26 3.16
3818 5335 2.045926 GTGGCTGGAGCGATTGGT 60.046 61.111 0.00 0.00 43.26 3.67
3819 5336 2.046023 TGGCTGGAGCGATTGGTG 60.046 61.111 0.00 0.00 43.26 4.17
3820 5337 2.268920 GGCTGGAGCGATTGGTGA 59.731 61.111 0.00 0.00 43.26 4.02
3821 5338 1.153086 GGCTGGAGCGATTGGTGAT 60.153 57.895 0.00 0.00 43.26 3.06
3822 5339 0.749454 GGCTGGAGCGATTGGTGATT 60.749 55.000 0.00 0.00 43.26 2.57
3823 5340 0.379669 GCTGGAGCGATTGGTGATTG 59.620 55.000 0.00 0.00 0.00 2.67
3824 5341 2.013563 GCTGGAGCGATTGGTGATTGA 61.014 52.381 0.00 0.00 0.00 2.57
3825 5342 2.569059 CTGGAGCGATTGGTGATTGAT 58.431 47.619 0.00 0.00 0.00 2.57
3826 5343 2.947652 CTGGAGCGATTGGTGATTGATT 59.052 45.455 0.00 0.00 0.00 2.57
3827 5344 3.355378 TGGAGCGATTGGTGATTGATTT 58.645 40.909 0.00 0.00 0.00 2.17
3828 5345 4.522114 TGGAGCGATTGGTGATTGATTTA 58.478 39.130 0.00 0.00 0.00 1.40
3829 5346 4.946772 TGGAGCGATTGGTGATTGATTTAA 59.053 37.500 0.00 0.00 0.00 1.52
3830 5347 5.593909 TGGAGCGATTGGTGATTGATTTAAT 59.406 36.000 0.00 0.00 0.00 1.40
3831 5348 6.096705 TGGAGCGATTGGTGATTGATTTAATT 59.903 34.615 0.00 0.00 0.00 1.40
3832 5349 6.638468 GGAGCGATTGGTGATTGATTTAATTC 59.362 38.462 0.00 0.00 0.00 2.17
3833 5350 7.099266 AGCGATTGGTGATTGATTTAATTCA 57.901 32.000 0.00 0.00 0.00 2.57
3834 5351 7.719483 AGCGATTGGTGATTGATTTAATTCAT 58.281 30.769 1.11 0.00 0.00 2.57
3835 5352 7.864379 AGCGATTGGTGATTGATTTAATTCATC 59.136 33.333 1.11 3.07 0.00 2.92
3836 5353 7.864379 GCGATTGGTGATTGATTTAATTCATCT 59.136 33.333 1.11 0.00 0.00 2.90
3837 5354 9.177304 CGATTGGTGATTGATTTAATTCATCTG 57.823 33.333 1.11 0.00 0.00 2.90
3842 5359 9.472361 GGTGATTGATTTAATTCATCTGATTGG 57.528 33.333 1.11 0.00 0.00 3.16
3847 5364 8.827832 TGATTTAATTCATCTGATTGGAACCT 57.172 30.769 0.00 0.00 0.00 3.50
3848 5365 9.258629 TGATTTAATTCATCTGATTGGAACCTT 57.741 29.630 0.00 0.00 0.00 3.50
3849 5366 9.525409 GATTTAATTCATCTGATTGGAACCTTG 57.475 33.333 0.00 0.00 0.00 3.61
3850 5367 5.927281 AATTCATCTGATTGGAACCTTGG 57.073 39.130 0.00 0.00 0.00 3.61
3851 5368 4.656100 TTCATCTGATTGGAACCTTGGA 57.344 40.909 0.00 0.00 0.00 3.53
3852 5369 3.955471 TCATCTGATTGGAACCTTGGAC 58.045 45.455 0.00 0.00 0.00 4.02
3853 5370 2.879103 TCTGATTGGAACCTTGGACC 57.121 50.000 0.00 0.00 0.00 4.46
3854 5371 2.061848 TCTGATTGGAACCTTGGACCA 58.938 47.619 0.00 0.00 0.00 4.02
3855 5372 2.649312 TCTGATTGGAACCTTGGACCAT 59.351 45.455 0.00 0.00 33.56 3.55
3856 5373 2.756760 CTGATTGGAACCTTGGACCATG 59.243 50.000 0.00 0.00 33.56 3.66
3857 5374 2.109834 TGATTGGAACCTTGGACCATGT 59.890 45.455 0.00 0.00 33.56 3.21
3858 5375 3.332187 TGATTGGAACCTTGGACCATGTA 59.668 43.478 0.00 0.00 33.56 2.29
3859 5376 3.885976 TTGGAACCTTGGACCATGTAA 57.114 42.857 0.00 0.00 33.56 2.41
3860 5377 3.149005 TGGAACCTTGGACCATGTAAC 57.851 47.619 0.00 0.00 0.00 2.50
3861 5378 2.081462 GGAACCTTGGACCATGTAACG 58.919 52.381 0.00 0.00 0.00 3.18
3862 5379 1.467342 GAACCTTGGACCATGTAACGC 59.533 52.381 0.00 0.00 0.00 4.84
3863 5380 0.398696 ACCTTGGACCATGTAACGCA 59.601 50.000 0.00 0.00 0.00 5.24
3864 5381 1.202830 ACCTTGGACCATGTAACGCAA 60.203 47.619 0.00 0.00 0.00 4.85
3865 5382 2.091541 CCTTGGACCATGTAACGCAAT 58.908 47.619 0.00 0.00 0.00 3.56
3866 5383 2.491693 CCTTGGACCATGTAACGCAATT 59.508 45.455 0.00 0.00 0.00 2.32
3867 5384 3.500982 CTTGGACCATGTAACGCAATTG 58.499 45.455 0.00 0.00 0.00 2.32
3868 5385 1.201181 TGGACCATGTAACGCAATTGC 59.799 47.619 20.76 20.76 37.78 3.56
3869 5386 1.472480 GGACCATGTAACGCAATTGCT 59.528 47.619 26.86 12.81 39.32 3.91
3870 5387 2.518949 GACCATGTAACGCAATTGCTG 58.481 47.619 26.86 21.40 39.32 4.41
3871 5388 1.885887 ACCATGTAACGCAATTGCTGT 59.114 42.857 26.86 22.00 39.32 4.40
3872 5389 2.295909 ACCATGTAACGCAATTGCTGTT 59.704 40.909 29.49 29.49 39.58 3.16
3873 5390 3.243704 ACCATGTAACGCAATTGCTGTTT 60.244 39.130 30.78 22.06 38.22 2.83
3874 5391 3.121611 CCATGTAACGCAATTGCTGTTTG 59.878 43.478 30.78 24.86 38.22 2.93
3875 5392 3.428746 TGTAACGCAATTGCTGTTTGT 57.571 38.095 30.78 19.36 38.22 2.83
3876 5393 4.553756 TGTAACGCAATTGCTGTTTGTA 57.446 36.364 30.78 20.28 38.22 2.41
3877 5394 5.114785 TGTAACGCAATTGCTGTTTGTAT 57.885 34.783 30.78 17.64 38.22 2.29
3878 5395 6.242508 TGTAACGCAATTGCTGTTTGTATA 57.757 33.333 30.78 18.09 38.22 1.47
3879 5396 6.669278 TGTAACGCAATTGCTGTTTGTATAA 58.331 32.000 30.78 17.59 38.22 0.98
3880 5397 7.139392 TGTAACGCAATTGCTGTTTGTATAAA 58.861 30.769 30.78 17.09 38.22 1.40
3881 5398 7.810282 TGTAACGCAATTGCTGTTTGTATAAAT 59.190 29.630 30.78 15.63 38.22 1.40
3882 5399 6.869421 ACGCAATTGCTGTTTGTATAAATC 57.131 33.333 26.86 0.00 39.32 2.17
3883 5400 5.511377 ACGCAATTGCTGTTTGTATAAATCG 59.489 36.000 26.86 8.79 39.32 3.34
3884 5401 5.511377 CGCAATTGCTGTTTGTATAAATCGT 59.489 36.000 26.86 0.00 39.32 3.73
3885 5402 6.504644 CGCAATTGCTGTTTGTATAAATCGTG 60.505 38.462 26.86 2.12 39.32 4.35
3886 5403 6.526325 GCAATTGCTGTTTGTATAAATCGTGA 59.474 34.615 23.21 0.00 38.21 4.35
3887 5404 7.253420 GCAATTGCTGTTTGTATAAATCGTGAG 60.253 37.037 23.21 0.00 38.21 3.51
3888 5405 5.794687 TGCTGTTTGTATAAATCGTGAGG 57.205 39.130 0.00 0.00 0.00 3.86
3889 5406 5.242434 TGCTGTTTGTATAAATCGTGAGGT 58.758 37.500 0.00 0.00 0.00 3.85
3890 5407 6.399743 TGCTGTTTGTATAAATCGTGAGGTA 58.600 36.000 0.00 0.00 0.00 3.08
3891 5408 6.311935 TGCTGTTTGTATAAATCGTGAGGTAC 59.688 38.462 0.00 0.00 0.00 3.34
3905 5422 4.611310 TGAGGTACGCACGCTATATATC 57.389 45.455 0.00 0.00 29.59 1.63
3906 5423 4.004982 TGAGGTACGCACGCTATATATCA 58.995 43.478 0.00 0.00 29.59 2.15
3907 5424 4.638865 TGAGGTACGCACGCTATATATCAT 59.361 41.667 0.00 0.00 29.59 2.45
3908 5425 5.124936 TGAGGTACGCACGCTATATATCATT 59.875 40.000 0.00 0.00 29.59 2.57
3909 5426 5.962433 AGGTACGCACGCTATATATCATTT 58.038 37.500 0.00 0.00 0.00 2.32
3910 5427 6.395629 AGGTACGCACGCTATATATCATTTT 58.604 36.000 0.00 0.00 0.00 1.82
3911 5428 6.310467 AGGTACGCACGCTATATATCATTTTG 59.690 38.462 0.00 0.00 0.00 2.44
3912 5429 6.309494 GGTACGCACGCTATATATCATTTTGA 59.691 38.462 0.00 0.00 0.00 2.69
3913 5430 6.968131 ACGCACGCTATATATCATTTTGAT 57.032 33.333 0.00 0.00 40.72 2.57
3914 5431 6.993878 ACGCACGCTATATATCATTTTGATC 58.006 36.000 0.00 0.00 38.26 2.92
3915 5432 6.036083 ACGCACGCTATATATCATTTTGATCC 59.964 38.462 0.00 0.00 38.26 3.36
3916 5433 6.256539 CGCACGCTATATATCATTTTGATCCT 59.743 38.462 0.00 0.00 38.26 3.24
3917 5434 7.201556 CGCACGCTATATATCATTTTGATCCTT 60.202 37.037 0.00 0.00 38.26 3.36
3918 5435 7.907045 GCACGCTATATATCATTTTGATCCTTG 59.093 37.037 0.00 0.00 38.26 3.61
3919 5436 8.393366 CACGCTATATATCATTTTGATCCTTGG 58.607 37.037 0.00 0.00 38.26 3.61
3920 5437 8.321353 ACGCTATATATCATTTTGATCCTTGGA 58.679 33.333 0.00 0.00 38.26 3.53
3921 5438 8.824781 CGCTATATATCATTTTGATCCTTGGAG 58.175 37.037 0.00 0.00 38.26 3.86
3922 5439 9.118300 GCTATATATCATTTTGATCCTTGGAGG 57.882 37.037 0.00 0.00 38.26 4.30
3930 5447 3.811702 TCCTTGGAGGACAGGCAG 58.188 61.111 0.00 0.00 40.06 4.85
3931 5448 1.158466 TCCTTGGAGGACAGGCAGA 59.842 57.895 0.00 0.00 40.06 4.26
3932 5449 0.906756 TCCTTGGAGGACAGGCAGAG 60.907 60.000 0.00 0.00 40.06 3.35
3933 5450 1.197430 CCTTGGAGGACAGGCAGAGT 61.197 60.000 0.00 0.00 37.67 3.24
3934 5451 0.248843 CTTGGAGGACAGGCAGAGTC 59.751 60.000 0.00 0.00 35.29 3.36
3935 5452 0.471780 TTGGAGGACAGGCAGAGTCA 60.472 55.000 7.00 0.00 37.74 3.41
3936 5453 0.252421 TGGAGGACAGGCAGAGTCAT 60.252 55.000 7.00 0.14 37.74 3.06
3937 5454 0.908198 GGAGGACAGGCAGAGTCATT 59.092 55.000 7.00 0.00 37.74 2.57
3938 5455 2.111384 GGAGGACAGGCAGAGTCATTA 58.889 52.381 7.00 0.00 37.74 1.90
3939 5456 2.501723 GGAGGACAGGCAGAGTCATTAA 59.498 50.000 7.00 0.00 37.74 1.40
3940 5457 3.526534 GAGGACAGGCAGAGTCATTAAC 58.473 50.000 7.00 0.00 37.74 2.01
3941 5458 2.237392 AGGACAGGCAGAGTCATTAACC 59.763 50.000 7.00 0.00 37.74 2.85
3942 5459 2.237392 GGACAGGCAGAGTCATTAACCT 59.763 50.000 7.00 0.00 37.74 3.50
3943 5460 3.307762 GGACAGGCAGAGTCATTAACCTT 60.308 47.826 7.00 0.00 37.74 3.50
3944 5461 4.327680 GACAGGCAGAGTCATTAACCTTT 58.672 43.478 0.00 0.00 36.06 3.11
3945 5462 4.729868 ACAGGCAGAGTCATTAACCTTTT 58.270 39.130 0.00 0.00 0.00 2.27
3946 5463 5.876357 ACAGGCAGAGTCATTAACCTTTTA 58.124 37.500 0.00 0.00 0.00 1.52
3947 5464 5.940470 ACAGGCAGAGTCATTAACCTTTTAG 59.060 40.000 0.00 0.00 0.00 1.85
3948 5465 4.944317 AGGCAGAGTCATTAACCTTTTAGC 59.056 41.667 0.00 0.00 0.00 3.09
3949 5466 4.944317 GGCAGAGTCATTAACCTTTTAGCT 59.056 41.667 0.00 0.00 0.00 3.32
3950 5467 5.065346 GGCAGAGTCATTAACCTTTTAGCTC 59.935 44.000 0.00 0.00 0.00 4.09
3951 5468 5.877564 GCAGAGTCATTAACCTTTTAGCTCT 59.122 40.000 0.00 0.00 0.00 4.09
3952 5469 6.036626 GCAGAGTCATTAACCTTTTAGCTCTC 59.963 42.308 0.00 0.00 0.00 3.20
3953 5470 7.327214 CAGAGTCATTAACCTTTTAGCTCTCT 58.673 38.462 0.00 0.00 0.00 3.10
3954 5471 7.277539 CAGAGTCATTAACCTTTTAGCTCTCTG 59.722 40.741 0.00 0.00 38.28 3.35
3955 5472 7.010339 AGTCATTAACCTTTTAGCTCTCTGT 57.990 36.000 0.00 0.00 0.00 3.41
3956 5473 7.454225 AGTCATTAACCTTTTAGCTCTCTGTT 58.546 34.615 0.00 0.00 0.00 3.16
3957 5474 7.939588 AGTCATTAACCTTTTAGCTCTCTGTTT 59.060 33.333 0.00 0.00 0.00 2.83
3958 5475 8.017946 GTCATTAACCTTTTAGCTCTCTGTTTG 58.982 37.037 0.00 0.00 0.00 2.93
3959 5476 7.719633 TCATTAACCTTTTAGCTCTCTGTTTGT 59.280 33.333 0.00 0.00 0.00 2.83
3960 5477 8.999431 CATTAACCTTTTAGCTCTCTGTTTGTA 58.001 33.333 0.00 0.00 0.00 2.41
3961 5478 9.740710 ATTAACCTTTTAGCTCTCTGTTTGTAT 57.259 29.630 0.00 0.00 0.00 2.29
3962 5479 7.440523 AACCTTTTAGCTCTCTGTTTGTATG 57.559 36.000 0.00 0.00 0.00 2.39
3963 5480 5.940470 ACCTTTTAGCTCTCTGTTTGTATGG 59.060 40.000 0.00 0.00 0.00 2.74
3964 5481 5.163713 CCTTTTAGCTCTCTGTTTGTATGGC 60.164 44.000 0.00 0.00 0.00 4.40
3965 5482 4.826274 TTAGCTCTCTGTTTGTATGGCT 57.174 40.909 0.00 0.00 0.00 4.75
3966 5483 2.983229 AGCTCTCTGTTTGTATGGCTG 58.017 47.619 0.00 0.00 0.00 4.85
3967 5484 2.568956 AGCTCTCTGTTTGTATGGCTGA 59.431 45.455 0.00 0.00 0.00 4.26
3968 5485 3.008375 AGCTCTCTGTTTGTATGGCTGAA 59.992 43.478 0.00 0.00 0.00 3.02
3969 5486 3.126000 GCTCTCTGTTTGTATGGCTGAAC 59.874 47.826 0.00 0.00 0.00 3.18
3970 5487 4.318332 CTCTCTGTTTGTATGGCTGAACA 58.682 43.478 0.00 0.00 0.00 3.18
3971 5488 4.910195 TCTCTGTTTGTATGGCTGAACAT 58.090 39.130 0.00 0.00 32.23 2.71
3972 5489 6.048732 TCTCTGTTTGTATGGCTGAACATA 57.951 37.500 0.00 0.00 32.23 2.29
3973 5490 6.108687 TCTCTGTTTGTATGGCTGAACATAG 58.891 40.000 0.00 0.00 34.23 2.23
3974 5491 6.048732 TCTGTTTGTATGGCTGAACATAGA 57.951 37.500 0.00 0.00 34.23 1.98
3975 5492 6.108687 TCTGTTTGTATGGCTGAACATAGAG 58.891 40.000 0.00 0.00 34.23 2.43
3976 5493 5.804639 TGTTTGTATGGCTGAACATAGAGT 58.195 37.500 0.00 0.00 34.23 3.24
3977 5494 5.643348 TGTTTGTATGGCTGAACATAGAGTG 59.357 40.000 0.00 0.00 34.23 3.51
3978 5495 5.420725 TTGTATGGCTGAACATAGAGTGT 57.579 39.130 0.00 0.00 44.84 3.55
3979 5496 5.011090 TGTATGGCTGAACATAGAGTGTC 57.989 43.478 0.00 0.00 41.14 3.67
3980 5497 4.466015 TGTATGGCTGAACATAGAGTGTCA 59.534 41.667 0.00 0.00 41.14 3.58
3981 5498 3.599730 TGGCTGAACATAGAGTGTCAG 57.400 47.619 0.00 0.00 41.14 3.51
3982 5499 2.234661 TGGCTGAACATAGAGTGTCAGG 59.765 50.000 0.00 0.00 41.14 3.86
3983 5500 2.419297 GGCTGAACATAGAGTGTCAGGG 60.419 54.545 0.00 0.00 41.14 4.45
3984 5501 2.898705 CTGAACATAGAGTGTCAGGGC 58.101 52.381 0.00 0.00 41.14 5.19
3985 5502 2.234661 CTGAACATAGAGTGTCAGGGCA 59.765 50.000 0.00 0.00 41.14 5.36
3986 5503 2.234661 TGAACATAGAGTGTCAGGGCAG 59.765 50.000 0.00 0.00 41.14 4.85
3987 5504 1.198713 ACATAGAGTGTCAGGGCAGG 58.801 55.000 0.00 0.00 35.77 4.85
3988 5505 1.198713 CATAGAGTGTCAGGGCAGGT 58.801 55.000 0.00 0.00 0.00 4.00
3989 5506 1.134580 CATAGAGTGTCAGGGCAGGTG 60.135 57.143 0.00 0.00 0.00 4.00
3990 5507 0.114364 TAGAGTGTCAGGGCAGGTGA 59.886 55.000 0.00 0.00 0.00 4.02
3991 5508 1.190833 AGAGTGTCAGGGCAGGTGAG 61.191 60.000 0.00 0.00 0.00 3.51
3992 5509 1.152247 AGTGTCAGGGCAGGTGAGA 60.152 57.895 0.00 0.00 0.00 3.27
3993 5510 0.764369 AGTGTCAGGGCAGGTGAGAA 60.764 55.000 0.00 0.00 0.00 2.87
3994 5511 0.321122 GTGTCAGGGCAGGTGAGAAG 60.321 60.000 0.00 0.00 0.00 2.85
3995 5512 0.764369 TGTCAGGGCAGGTGAGAAGT 60.764 55.000 0.00 0.00 0.00 3.01
3996 5513 0.321122 GTCAGGGCAGGTGAGAAGTG 60.321 60.000 0.00 0.00 0.00 3.16
3997 5514 1.002868 CAGGGCAGGTGAGAAGTGG 60.003 63.158 0.00 0.00 0.00 4.00
3998 5515 1.152030 AGGGCAGGTGAGAAGTGGA 60.152 57.895 0.00 0.00 0.00 4.02
3999 5516 1.003233 GGGCAGGTGAGAAGTGGAC 60.003 63.158 0.00 0.00 0.00 4.02
4000 5517 1.374758 GGCAGGTGAGAAGTGGACG 60.375 63.158 0.00 0.00 0.00 4.79
4001 5518 1.374758 GCAGGTGAGAAGTGGACGG 60.375 63.158 0.00 0.00 0.00 4.79
4002 5519 1.293498 CAGGTGAGAAGTGGACGGG 59.707 63.158 0.00 0.00 0.00 5.28
4003 5520 1.155390 AGGTGAGAAGTGGACGGGA 59.845 57.895 0.00 0.00 0.00 5.14
4004 5521 0.471211 AGGTGAGAAGTGGACGGGAA 60.471 55.000 0.00 0.00 0.00 3.97
4005 5522 0.037232 GGTGAGAAGTGGACGGGAAG 60.037 60.000 0.00 0.00 0.00 3.46
4006 5523 0.037232 GTGAGAAGTGGACGGGAAGG 60.037 60.000 0.00 0.00 0.00 3.46
4007 5524 1.079057 GAGAAGTGGACGGGAAGGC 60.079 63.158 0.00 0.00 0.00 4.35
4008 5525 1.827399 GAGAAGTGGACGGGAAGGCA 61.827 60.000 0.00 0.00 0.00 4.75
4009 5526 1.376037 GAAGTGGACGGGAAGGCAG 60.376 63.158 0.00 0.00 0.00 4.85
4010 5527 2.804828 GAAGTGGACGGGAAGGCAGG 62.805 65.000 0.00 0.00 0.00 4.85
4013 5530 4.785453 GGACGGGAAGGCAGGCTG 62.785 72.222 10.94 10.94 0.00 4.85
4014 5531 4.021925 GACGGGAAGGCAGGCTGT 62.022 66.667 17.16 0.00 0.00 4.40
4015 5532 4.335647 ACGGGAAGGCAGGCTGTG 62.336 66.667 17.16 0.00 0.00 3.66
4016 5533 4.335647 CGGGAAGGCAGGCTGTGT 62.336 66.667 17.16 0.06 0.00 3.72
4017 5534 2.116125 GGGAAGGCAGGCTGTGTT 59.884 61.111 17.16 9.73 0.00 3.32
4018 5535 1.973812 GGGAAGGCAGGCTGTGTTC 60.974 63.158 17.16 17.45 0.00 3.18
4019 5536 2.328099 GGAAGGCAGGCTGTGTTCG 61.328 63.158 17.16 0.00 0.00 3.95
4020 5537 1.598130 GAAGGCAGGCTGTGTTCGT 60.598 57.895 17.16 2.17 0.00 3.85
4021 5538 1.845809 GAAGGCAGGCTGTGTTCGTG 61.846 60.000 17.16 0.00 0.00 4.35
4022 5539 4.030452 GGCAGGCTGTGTTCGTGC 62.030 66.667 17.16 0.00 42.58 5.34
4023 5540 2.974698 GCAGGCTGTGTTCGTGCT 60.975 61.111 17.16 0.00 40.81 4.40
4024 5541 2.959357 GCAGGCTGTGTTCGTGCTC 61.959 63.158 17.16 0.00 40.81 4.26
4025 5542 2.031163 AGGCTGTGTTCGTGCTCC 59.969 61.111 0.00 0.00 0.00 4.70
4026 5543 3.414700 GGCTGTGTTCGTGCTCCG 61.415 66.667 0.00 0.00 38.13 4.63
4027 5544 2.661866 GCTGTGTTCGTGCTCCGT 60.662 61.111 0.00 0.00 37.94 4.69
4028 5545 2.658707 GCTGTGTTCGTGCTCCGTC 61.659 63.158 0.00 0.00 37.94 4.79
4029 5546 1.299850 CTGTGTTCGTGCTCCGTCA 60.300 57.895 0.00 0.00 37.94 4.35
4030 5547 1.548973 CTGTGTTCGTGCTCCGTCAC 61.549 60.000 14.32 14.32 40.18 3.67
4031 5548 1.299926 GTGTTCGTGCTCCGTCACT 60.300 57.895 14.11 0.00 38.42 3.41
4032 5549 0.874607 GTGTTCGTGCTCCGTCACTT 60.875 55.000 14.11 0.00 38.42 3.16
4033 5550 0.874175 TGTTCGTGCTCCGTCACTTG 60.874 55.000 0.00 0.00 37.94 3.16
4034 5551 0.596600 GTTCGTGCTCCGTCACTTGA 60.597 55.000 0.00 0.00 37.94 3.02
4035 5552 0.317160 TTCGTGCTCCGTCACTTGAT 59.683 50.000 0.00 0.00 37.94 2.57
4036 5553 0.317160 TCGTGCTCCGTCACTTGATT 59.683 50.000 0.00 0.00 37.94 2.57
4037 5554 1.148310 CGTGCTCCGTCACTTGATTT 58.852 50.000 0.00 0.00 34.92 2.17
4038 5555 1.126846 CGTGCTCCGTCACTTGATTTC 59.873 52.381 0.00 0.00 34.92 2.17
4039 5556 1.126846 GTGCTCCGTCACTTGATTTCG 59.873 52.381 0.00 0.00 34.29 3.46
4040 5557 1.000394 TGCTCCGTCACTTGATTTCGA 60.000 47.619 0.00 0.00 0.00 3.71
4041 5558 1.390463 GCTCCGTCACTTGATTTCGAC 59.610 52.381 0.00 0.00 0.00 4.20
4042 5559 2.927014 GCTCCGTCACTTGATTTCGACT 60.927 50.000 0.00 0.00 0.00 4.18
4043 5560 2.663602 CTCCGTCACTTGATTTCGACTG 59.336 50.000 0.00 0.00 0.00 3.51
4044 5561 2.295070 TCCGTCACTTGATTTCGACTGA 59.705 45.455 0.00 0.00 0.00 3.41
4069 5586 3.656559 GCACTTGGCATCACAGAAAAAT 58.343 40.909 0.00 0.00 43.97 1.82
4164 5682 8.109705 TGAAATAGAGTTTTAGCATTTCAGCA 57.890 30.769 4.41 0.00 39.45 4.41
4168 5686 6.336842 AGAGTTTTAGCATTTCAGCAACAT 57.663 33.333 0.00 0.00 36.85 2.71
4202 5720 6.128172 GGACAAGTACATGAATGAAGGAACAG 60.128 42.308 4.87 0.00 0.00 3.16
4205 5723 5.738909 AGTACATGAATGAAGGAACAGGAG 58.261 41.667 0.00 0.00 0.00 3.69
4206 5724 3.350833 ACATGAATGAAGGAACAGGAGC 58.649 45.455 0.00 0.00 0.00 4.70
4208 5726 3.726557 TGAATGAAGGAACAGGAGCAT 57.273 42.857 0.00 0.00 0.00 3.79
4211 5729 2.672961 TGAAGGAACAGGAGCATACG 57.327 50.000 0.00 0.00 0.00 3.06
4270 5788 3.442977 AGTCTTGTATCACAGTCCGTACC 59.557 47.826 0.00 0.00 0.00 3.34
4275 5793 0.389426 ATCACAGTCCGTACCGCAAC 60.389 55.000 0.00 0.00 0.00 4.17
4342 5860 1.021968 CAAAACTATACCCGCCCTGC 58.978 55.000 0.00 0.00 0.00 4.85
4372 5890 2.357517 GCCGTGAGTGTCACCCTG 60.358 66.667 0.00 0.00 44.20 4.45
4397 5915 1.080298 GCGCGTGTACTACCACCTT 60.080 57.895 8.43 0.00 31.47 3.50
4465 5983 0.033504 GAGCCTCAACAACCACTCGA 59.966 55.000 0.00 0.00 0.00 4.04
4498 6016 3.124921 GGCCCGACATTGGTGACG 61.125 66.667 0.00 0.00 41.90 4.35
4514 6032 3.334751 CGGTGCGCGAAACTGTGA 61.335 61.111 12.10 0.00 0.00 3.58
4529 6047 4.706842 ACTGTGACATTGTCCTTTAGGT 57.293 40.909 14.05 2.58 36.34 3.08
4538 6056 0.879090 GTCCTTTAGGTTTGGCACGG 59.121 55.000 0.00 0.00 36.34 4.94
4549 6067 3.585990 GGCACGGCGATTGATGGG 61.586 66.667 16.62 0.00 0.00 4.00
4555 6073 1.439353 CGGCGATTGATGGGAGGTTG 61.439 60.000 0.00 0.00 0.00 3.77
4594 6112 1.752501 CGCAGCCGTCTAACAATCCG 61.753 60.000 0.00 0.00 0.00 4.18
4618 6136 6.418057 AGGGTGCAATTGAAGAATTTGTTA 57.582 33.333 10.34 0.00 28.65 2.41
4636 6154 4.188462 TGTTATACTCCTTTGCATCCACG 58.812 43.478 0.00 0.00 0.00 4.94
4658 6176 2.238646 TCATAAACCAAGCCAGGATCGT 59.761 45.455 0.00 0.00 0.00 3.73
4659 6177 2.396590 TAAACCAAGCCAGGATCGTC 57.603 50.000 0.00 0.00 0.00 4.20
4668 6186 3.148279 AGGATCGTCGGCCCTGTC 61.148 66.667 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.252962 GTAGCAACTAAAACAAAGTCAGTAGTA 57.747 33.333 0.00 0.00 0.00 1.82
16 17 8.366671 AGTAGTAGCAACTAAAACAAAGTCAG 57.633 34.615 0.00 0.00 39.90 3.51
137 138 1.177256 AGGCAAAAGAGGCACAGCAG 61.177 55.000 0.00 0.00 36.37 4.24
138 139 1.152694 AGGCAAAAGAGGCACAGCA 60.153 52.632 0.00 0.00 36.37 4.41
139 140 1.288127 CAGGCAAAAGAGGCACAGC 59.712 57.895 0.00 0.00 36.37 4.40
140 141 1.537202 GTACAGGCAAAAGAGGCACAG 59.463 52.381 0.00 0.00 36.37 3.66
220 262 0.250513 ACTAGGCACTTGCTAGGCAC 59.749 55.000 0.38 0.00 38.71 5.01
223 265 1.827969 ACAGACTAGGCACTTGCTAGG 59.172 52.381 0.00 0.00 41.75 3.02
224 266 3.601443 AACAGACTAGGCACTTGCTAG 57.399 47.619 0.00 4.09 41.75 3.42
225 267 3.323691 TCAAACAGACTAGGCACTTGCTA 59.676 43.478 0.00 0.00 41.75 3.49
226 268 2.104792 TCAAACAGACTAGGCACTTGCT 59.895 45.455 0.00 0.00 41.75 3.91
227 269 2.494059 TCAAACAGACTAGGCACTTGC 58.506 47.619 0.00 0.00 41.75 4.01
228 270 5.237815 TGTATCAAACAGACTAGGCACTTG 58.762 41.667 0.00 0.00 34.72 3.16
229 271 5.483685 TGTATCAAACAGACTAGGCACTT 57.516 39.130 0.00 0.00 34.72 3.16
230 272 5.423610 AGATGTATCAAACAGACTAGGCACT 59.576 40.000 0.00 0.00 42.70 4.40
231 273 5.665459 AGATGTATCAAACAGACTAGGCAC 58.335 41.667 0.00 0.00 42.70 5.01
232 274 5.939764 AGATGTATCAAACAGACTAGGCA 57.060 39.130 0.00 0.00 42.70 4.75
233 275 7.493367 ACTAAGATGTATCAAACAGACTAGGC 58.507 38.462 0.00 0.00 42.70 3.93
250 292 4.447054 GCATGCACTACTGCTACTAAGATG 59.553 45.833 14.21 0.00 44.57 2.90
294 336 6.061441 ACTTCACCTCAACAAATGACATGTA 58.939 36.000 0.00 0.00 33.47 2.29
302 344 8.960591 CAGGATATAAACTTCACCTCAACAAAT 58.039 33.333 0.00 0.00 0.00 2.32
357 400 6.469782 ACATGTTTGTGACCAAGAAAAGAT 57.530 33.333 0.00 0.00 33.85 2.40
376 419 0.874390 AAGTAACAGCCGTGCACATG 59.126 50.000 18.64 14.30 0.00 3.21
377 420 0.874390 CAAGTAACAGCCGTGCACAT 59.126 50.000 18.64 0.00 0.00 3.21
378 421 0.462937 ACAAGTAACAGCCGTGCACA 60.463 50.000 18.64 0.00 0.00 4.57
379 422 1.504359 TACAAGTAACAGCCGTGCAC 58.496 50.000 6.82 6.82 0.00 4.57
380 423 2.242047 TTACAAGTAACAGCCGTGCA 57.758 45.000 0.00 0.00 0.00 4.57
381 424 4.932268 TTATTACAAGTAACAGCCGTGC 57.068 40.909 0.00 0.00 0.00 5.34
382 425 5.583061 TCCATTATTACAAGTAACAGCCGTG 59.417 40.000 0.00 0.00 0.00 4.94
383 426 5.736813 TCCATTATTACAAGTAACAGCCGT 58.263 37.500 0.00 0.00 0.00 5.68
384 427 6.293407 CCATCCATTATTACAAGTAACAGCCG 60.293 42.308 0.00 0.00 0.00 5.52
385 428 6.546034 ACCATCCATTATTACAAGTAACAGCC 59.454 38.462 0.00 0.00 0.00 4.85
426 469 7.284919 TCCATGCGACTACTATCAAGATTTA 57.715 36.000 0.00 0.00 0.00 1.40
431 474 6.258727 ACATTTTCCATGCGACTACTATCAAG 59.741 38.462 0.00 0.00 0.00 3.02
437 480 7.391148 AAAATACATTTTCCATGCGACTACT 57.609 32.000 0.00 0.00 35.18 2.57
478 521 5.804771 GCTTCTTTTGAGTACTCCCTCCAAT 60.805 44.000 20.11 0.00 0.00 3.16
520 563 2.679336 CCAAAATTAAGCTTGGGCATGC 59.321 45.455 9.90 9.90 38.77 4.06
561 604 2.443416 GTAACACATCCCAAACTCCCC 58.557 52.381 0.00 0.00 0.00 4.81
562 605 2.224917 TGGTAACACATCCCAAACTCCC 60.225 50.000 0.00 0.00 46.17 4.30
627 670 8.796475 CAATCTGAGAATTAGGACCTTCAAAAA 58.204 33.333 0.00 0.00 0.00 1.94
628 671 7.394359 CCAATCTGAGAATTAGGACCTTCAAAA 59.606 37.037 0.00 0.00 0.00 2.44
629 672 6.886459 CCAATCTGAGAATTAGGACCTTCAAA 59.114 38.462 0.00 0.00 0.00 2.69
630 673 6.012508 ACCAATCTGAGAATTAGGACCTTCAA 60.013 38.462 0.00 0.00 0.00 2.69
631 674 5.488919 ACCAATCTGAGAATTAGGACCTTCA 59.511 40.000 0.00 0.00 0.00 3.02
632 675 5.995446 ACCAATCTGAGAATTAGGACCTTC 58.005 41.667 0.00 0.00 0.00 3.46
633 676 6.674419 ACTACCAATCTGAGAATTAGGACCTT 59.326 38.462 0.00 0.00 0.00 3.50
634 677 6.206042 ACTACCAATCTGAGAATTAGGACCT 58.794 40.000 0.00 0.00 0.00 3.85
635 678 6.487299 ACTACCAATCTGAGAATTAGGACC 57.513 41.667 0.00 0.00 0.00 4.46
649 692 9.916397 CGAACAAGATGTTTAATACTACCAATC 57.084 33.333 0.00 0.00 41.28 2.67
650 693 8.889717 CCGAACAAGATGTTTAATACTACCAAT 58.110 33.333 0.00 0.00 41.28 3.16
651 694 7.879160 ACCGAACAAGATGTTTAATACTACCAA 59.121 33.333 0.00 0.00 41.28 3.67
652 695 7.388437 ACCGAACAAGATGTTTAATACTACCA 58.612 34.615 0.00 0.00 41.28 3.25
653 696 7.838771 ACCGAACAAGATGTTTAATACTACC 57.161 36.000 0.00 0.00 41.28 3.18
656 699 9.498176 AGTTTACCGAACAAGATGTTTAATACT 57.502 29.630 0.00 0.00 41.28 2.12
657 700 9.537848 CAGTTTACCGAACAAGATGTTTAATAC 57.462 33.333 0.00 0.00 41.28 1.89
716 759 6.206634 TGGTTCTTTCAGTTTCATGTACCATC 59.793 38.462 0.00 0.00 0.00 3.51
725 768 7.466725 CGAGTTAACATGGTTCTTTCAGTTTCA 60.467 37.037 8.61 0.00 0.00 2.69
762 805 6.173339 GCAGATACTATGCTAGAGAGAGTCT 58.827 44.000 0.00 0.00 40.59 3.24
879 923 2.234908 CCCAATCCTCAGAAGTTCGACT 59.765 50.000 0.00 0.00 0.00 4.18
987 1031 4.158209 CACATGAACATGCCCAAATCTACA 59.842 41.667 13.71 0.00 42.39 2.74
1007 1051 3.173151 TCTCTTCCCTGAATGTAGCACA 58.827 45.455 0.00 0.00 0.00 4.57
1187 1231 7.829211 TGAAGAAATGGGACTGGTTATCTAAAG 59.171 37.037 0.00 0.00 0.00 1.85
1215 1259 2.931068 TTCTGCGAGGCGAGCAAGA 61.931 57.895 10.76 7.90 44.67 3.02
1298 1342 5.480710 TCATAAATTCTCCTCCTCCTCCAT 58.519 41.667 0.00 0.00 0.00 3.41
1391 1450 2.597455 TGATCAGGGATACGATGCAGA 58.403 47.619 0.00 0.00 37.60 4.26
1401 1460 1.132462 AGGCAGGAGATGATCAGGGAT 60.132 52.381 0.09 0.00 0.00 3.85
1762 1896 4.819761 GCGCACAGCTCGGATGGA 62.820 66.667 0.30 0.00 44.04 3.41
1962 2102 4.090588 GCGGTGGGAATGTCCGGA 62.091 66.667 0.00 0.00 43.77 5.14
2004 2144 3.028366 GAAAAGGCCGAGCTCGTGC 62.028 63.158 32.41 30.91 37.74 5.34
2664 4127 3.077359 AGCAATGAACAGCAAGTACTCC 58.923 45.455 0.00 0.00 0.00 3.85
2721 4184 5.179368 GCAGTCAAGTACAATTAGAAGTGCA 59.821 40.000 0.00 0.00 0.00 4.57
2769 4233 7.012421 GGAATTGAGTAAAAGACAGTGTCAGTT 59.988 37.037 24.73 18.62 34.60 3.16
2777 4241 5.997746 TGGACTGGAATTGAGTAAAAGACAG 59.002 40.000 0.00 0.00 0.00 3.51
2822 4289 3.197790 CTCAGCACAATCGCCCCG 61.198 66.667 0.00 0.00 0.00 5.73
2870 4337 5.391736 GGACGAACGTCTTAAGATGAGAGAA 60.392 44.000 27.61 0.00 44.04 2.87
2881 4351 1.475280 CCATGGAGGACGAACGTCTTA 59.525 52.381 22.98 5.97 44.04 2.10
3037 4513 3.214328 GGGGCAAACAGATATACCACTG 58.786 50.000 0.00 0.00 39.65 3.66
3046 4522 2.676471 GTGGCGGGGCAAACAGAT 60.676 61.111 0.00 0.00 0.00 2.90
3092 4568 0.765510 GGGTCCTCCACTGACAAGTT 59.234 55.000 0.00 0.00 32.98 2.66
3112 4588 1.956170 ACGCCTCAACACGCAGAAG 60.956 57.895 0.00 0.00 0.00 2.85
3172 4648 0.951558 AACAACCCAAACTAGCGCAG 59.048 50.000 11.47 7.81 0.00 5.18
3200 4676 3.815962 TGAAAACACGGCAGCATAAGTAA 59.184 39.130 0.00 0.00 0.00 2.24
3201 4677 3.187637 GTGAAAACACGGCAGCATAAGTA 59.812 43.478 0.00 0.00 0.00 2.24
3257 4733 6.687105 CGCAAAATTATGAACAGGTAGCTAAC 59.313 38.462 0.00 0.00 0.00 2.34
3283 4759 3.070302 AGACCTTCACCTTCTCACTTCAC 59.930 47.826 0.00 0.00 0.00 3.18
3350 4826 6.157820 TCCACACTCATAATCCTAATGGTCAA 59.842 38.462 0.00 0.00 34.23 3.18
3355 4831 7.657761 GGTACTTCCACACTCATAATCCTAATG 59.342 40.741 0.00 0.00 35.97 1.90
3386 4862 3.157087 AGAGGCCCAAAACAACATACAG 58.843 45.455 0.00 0.00 0.00 2.74
3434 4911 6.423302 GGATATCAGCAAGAGATATAATGCGG 59.577 42.308 4.83 0.00 38.46 5.69
3436 4913 8.202811 TCAGGATATCAGCAAGAGATATAATGC 58.797 37.037 4.83 0.00 38.46 3.56
3490 4967 6.070194 AGGAACTAGGCAAGCTATGAACTTAA 60.070 38.462 0.00 0.00 36.02 1.85
3493 4970 3.777522 AGGAACTAGGCAAGCTATGAACT 59.222 43.478 0.00 0.00 36.02 3.01
3494 4971 3.873952 CAGGAACTAGGCAAGCTATGAAC 59.126 47.826 0.00 0.00 36.02 3.18
3495 4972 3.519510 ACAGGAACTAGGCAAGCTATGAA 59.480 43.478 0.00 0.00 36.02 2.57
3497 4974 3.550437 ACAGGAACTAGGCAAGCTATG 57.450 47.619 0.00 0.00 36.02 2.23
3500 4977 3.370953 CCATTACAGGAACTAGGCAAGCT 60.371 47.826 0.00 0.00 36.02 3.74
3501 4978 2.945668 CCATTACAGGAACTAGGCAAGC 59.054 50.000 0.00 0.00 36.02 4.01
3502 4979 4.487714 TCCATTACAGGAACTAGGCAAG 57.512 45.455 0.00 0.00 36.02 4.01
3503 4980 4.919774 TTCCATTACAGGAACTAGGCAA 57.080 40.909 0.00 0.00 42.56 4.52
3509 4986 8.706547 GCTGAAACAGATTCCATTACAGGAACT 61.707 40.741 2.81 0.00 39.98 3.01
3513 4990 4.946157 AGCTGAAACAGATTCCATTACAGG 59.054 41.667 2.81 0.00 37.22 4.00
3517 4994 3.374988 CGCAGCTGAAACAGATTCCATTA 59.625 43.478 20.43 0.00 37.22 1.90
3522 4999 1.135859 CCACGCAGCTGAAACAGATTC 60.136 52.381 20.43 0.00 38.60 2.52
3529 5006 1.098869 TGTTTTCCACGCAGCTGAAA 58.901 45.000 20.43 5.59 0.00 2.69
3543 5051 5.931724 GTGCATAGGGCTAAATTTGTGTTTT 59.068 36.000 0.00 0.00 45.15 2.43
3561 5069 3.719268 AAGATGACAGGGTTGTGCATA 57.281 42.857 0.00 0.00 37.76 3.14
3572 5080 4.988540 TGTCTACAAACCGAAAGATGACAG 59.011 41.667 0.00 0.00 0.00 3.51
3573 5081 4.748102 GTGTCTACAAACCGAAAGATGACA 59.252 41.667 0.00 0.00 0.00 3.58
3575 5083 4.988540 CAGTGTCTACAAACCGAAAGATGA 59.011 41.667 0.00 0.00 0.00 2.92
3577 5085 3.746492 GCAGTGTCTACAAACCGAAAGAT 59.254 43.478 0.00 0.00 0.00 2.40
3600 5108 3.539604 GCTACAAATGGATCTGCAGACT 58.460 45.455 20.97 8.52 0.00 3.24
3601 5109 2.615912 GGCTACAAATGGATCTGCAGAC 59.384 50.000 20.97 12.88 0.00 3.51
3602 5110 2.239402 TGGCTACAAATGGATCTGCAGA 59.761 45.455 20.79 20.79 0.00 4.26
3603 5111 2.646930 TGGCTACAAATGGATCTGCAG 58.353 47.619 7.63 7.63 0.00 4.41
3604 5112 2.804986 TGGCTACAAATGGATCTGCA 57.195 45.000 0.00 0.00 0.00 4.41
3605 5113 3.019564 ACTTGGCTACAAATGGATCTGC 58.980 45.455 0.00 0.00 35.89 4.26
3606 5114 4.096984 GGAACTTGGCTACAAATGGATCTG 59.903 45.833 0.00 0.00 35.89 2.90
3607 5115 4.018050 AGGAACTTGGCTACAAATGGATCT 60.018 41.667 0.00 0.00 35.89 2.75
3608 5116 4.273318 AGGAACTTGGCTACAAATGGATC 58.727 43.478 0.00 0.00 35.89 3.36
3610 5118 3.806949 AGGAACTTGGCTACAAATGGA 57.193 42.857 0.00 0.00 35.89 3.41
3630 5138 0.472471 AACCCTTCGTGCCTCAAGAA 59.528 50.000 0.00 0.00 31.82 2.52
3635 5143 1.207329 AGACATAACCCTTCGTGCCTC 59.793 52.381 0.00 0.00 0.00 4.70
3641 5149 6.595716 AGAAAAGAATCAGACATAACCCTTCG 59.404 38.462 0.00 0.00 0.00 3.79
3653 5161 7.013655 CCCAAGTTTCTTCAGAAAAGAATCAGA 59.986 37.037 3.51 0.00 44.58 3.27
3654 5162 7.144000 CCCAAGTTTCTTCAGAAAAGAATCAG 58.856 38.462 3.51 4.10 44.58 2.90
3690 5199 0.745486 TCGGATCAGCCATTGCACTG 60.745 55.000 0.00 0.00 41.13 3.66
3707 5216 2.159707 CCTCAAACGTGGCTTGTTATCG 60.160 50.000 0.00 0.00 0.00 2.92
3717 5234 3.122948 CAGTTTCGATACCTCAAACGTGG 59.877 47.826 2.13 0.00 35.55 4.94
3720 5237 2.734606 TGCAGTTTCGATACCTCAAACG 59.265 45.455 2.13 0.00 35.55 3.60
3731 5248 3.930336 ACTGAAGATCATGCAGTTTCGA 58.070 40.909 8.71 0.00 39.69 3.71
3739 5256 2.425143 TCCCCAACTGAAGATCATGC 57.575 50.000 0.00 0.00 0.00 4.06
3743 5260 2.555199 CGACATCCCCAACTGAAGATC 58.445 52.381 0.00 0.00 0.00 2.75
3744 5261 1.210478 CCGACATCCCCAACTGAAGAT 59.790 52.381 0.00 0.00 0.00 2.40
3745 5262 0.613260 CCGACATCCCCAACTGAAGA 59.387 55.000 0.00 0.00 0.00 2.87
3746 5263 0.324943 ACCGACATCCCCAACTGAAG 59.675 55.000 0.00 0.00 0.00 3.02
3747 5264 0.036164 CACCGACATCCCCAACTGAA 59.964 55.000 0.00 0.00 0.00 3.02
3748 5265 1.676968 CACCGACATCCCCAACTGA 59.323 57.895 0.00 0.00 0.00 3.41
3749 5266 2.040544 GCACCGACATCCCCAACTG 61.041 63.158 0.00 0.00 0.00 3.16
3750 5267 1.779061 AAGCACCGACATCCCCAACT 61.779 55.000 0.00 0.00 0.00 3.16
3751 5268 1.303317 AAGCACCGACATCCCCAAC 60.303 57.895 0.00 0.00 0.00 3.77
3752 5269 1.303236 CAAGCACCGACATCCCCAA 60.303 57.895 0.00 0.00 0.00 4.12
3753 5270 2.350895 CAAGCACCGACATCCCCA 59.649 61.111 0.00 0.00 0.00 4.96
3754 5271 3.134127 GCAAGCACCGACATCCCC 61.134 66.667 0.00 0.00 0.00 4.81
3755 5272 2.045926 AGCAAGCACCGACATCCC 60.046 61.111 0.00 0.00 0.00 3.85
3756 5273 2.401766 CCAGCAAGCACCGACATCC 61.402 63.158 0.00 0.00 0.00 3.51
3757 5274 3.044059 GCCAGCAAGCACCGACATC 62.044 63.158 0.00 0.00 0.00 3.06
3758 5275 3.058160 GCCAGCAAGCACCGACAT 61.058 61.111 0.00 0.00 0.00 3.06
3780 5297 3.642778 CTGTCACGGCCCTGTACGG 62.643 68.421 0.00 0.00 0.00 4.02
3781 5298 2.126071 CTGTCACGGCCCTGTACG 60.126 66.667 0.00 0.00 0.00 3.67
3782 5299 2.434359 GCTGTCACGGCCCTGTAC 60.434 66.667 0.00 0.00 0.00 2.90
3783 5300 4.063967 CGCTGTCACGGCCCTGTA 62.064 66.667 2.05 0.00 31.00 2.74
3799 5316 3.197790 CAATCGCTCCAGCCACCG 61.198 66.667 0.00 0.00 37.91 4.94
3800 5317 2.825836 CCAATCGCTCCAGCCACC 60.826 66.667 0.00 0.00 37.91 4.61
3801 5318 2.045926 ACCAATCGCTCCAGCCAC 60.046 61.111 0.00 0.00 37.91 5.01
3802 5319 1.913951 ATCACCAATCGCTCCAGCCA 61.914 55.000 0.00 0.00 37.91 4.75
3803 5320 0.749454 AATCACCAATCGCTCCAGCC 60.749 55.000 0.00 0.00 37.91 4.85
3804 5321 0.379669 CAATCACCAATCGCTCCAGC 59.620 55.000 0.00 0.00 37.78 4.85
3805 5322 2.028420 TCAATCACCAATCGCTCCAG 57.972 50.000 0.00 0.00 0.00 3.86
3806 5323 2.715749 ATCAATCACCAATCGCTCCA 57.284 45.000 0.00 0.00 0.00 3.86
3807 5324 5.499139 TTAAATCAATCACCAATCGCTCC 57.501 39.130 0.00 0.00 0.00 4.70
3808 5325 7.195646 TGAATTAAATCAATCACCAATCGCTC 58.804 34.615 0.00 0.00 0.00 5.03
3809 5326 7.099266 TGAATTAAATCAATCACCAATCGCT 57.901 32.000 0.00 0.00 0.00 4.93
3810 5327 7.864379 AGATGAATTAAATCAATCACCAATCGC 59.136 33.333 0.00 0.00 32.06 4.58
3811 5328 9.177304 CAGATGAATTAAATCAATCACCAATCG 57.823 33.333 0.00 0.00 32.06 3.34
3816 5333 9.472361 CCAATCAGATGAATTAAATCAATCACC 57.528 33.333 0.00 0.00 32.06 4.02
3821 5338 9.258629 AGGTTCCAATCAGATGAATTAAATCAA 57.741 29.630 0.00 0.00 32.06 2.57
3822 5339 8.827832 AGGTTCCAATCAGATGAATTAAATCA 57.172 30.769 0.00 0.00 0.00 2.57
3823 5340 9.525409 CAAGGTTCCAATCAGATGAATTAAATC 57.475 33.333 0.00 0.00 0.00 2.17
3824 5341 8.480501 CCAAGGTTCCAATCAGATGAATTAAAT 58.519 33.333 0.00 0.00 0.00 1.40
3825 5342 7.673504 TCCAAGGTTCCAATCAGATGAATTAAA 59.326 33.333 0.00 0.00 0.00 1.52
3826 5343 7.122650 GTCCAAGGTTCCAATCAGATGAATTAA 59.877 37.037 0.00 0.00 0.00 1.40
3827 5344 6.603201 GTCCAAGGTTCCAATCAGATGAATTA 59.397 38.462 0.00 0.00 0.00 1.40
3828 5345 5.420104 GTCCAAGGTTCCAATCAGATGAATT 59.580 40.000 0.00 0.00 0.00 2.17
3829 5346 4.952335 GTCCAAGGTTCCAATCAGATGAAT 59.048 41.667 0.00 0.00 0.00 2.57
3830 5347 4.335416 GTCCAAGGTTCCAATCAGATGAA 58.665 43.478 0.00 0.00 0.00 2.57
3831 5348 3.308402 GGTCCAAGGTTCCAATCAGATGA 60.308 47.826 0.00 0.00 0.00 2.92
3832 5349 3.019564 GGTCCAAGGTTCCAATCAGATG 58.980 50.000 0.00 0.00 0.00 2.90
3833 5350 2.649312 TGGTCCAAGGTTCCAATCAGAT 59.351 45.455 0.00 0.00 0.00 2.90
3834 5351 2.061848 TGGTCCAAGGTTCCAATCAGA 58.938 47.619 0.00 0.00 0.00 3.27
3835 5352 2.584835 TGGTCCAAGGTTCCAATCAG 57.415 50.000 0.00 0.00 0.00 2.90
3836 5353 2.109834 ACATGGTCCAAGGTTCCAATCA 59.890 45.455 0.00 0.00 34.80 2.57
3837 5354 2.807676 ACATGGTCCAAGGTTCCAATC 58.192 47.619 0.00 0.00 34.80 2.67
3838 5355 2.999185 ACATGGTCCAAGGTTCCAAT 57.001 45.000 0.00 0.93 34.80 3.16
3839 5356 3.492337 GTTACATGGTCCAAGGTTCCAA 58.508 45.455 0.00 0.00 34.80 3.53
3840 5357 2.551287 CGTTACATGGTCCAAGGTTCCA 60.551 50.000 0.00 7.83 35.64 3.53
3841 5358 2.081462 CGTTACATGGTCCAAGGTTCC 58.919 52.381 0.00 0.00 0.00 3.62
3842 5359 1.467342 GCGTTACATGGTCCAAGGTTC 59.533 52.381 0.00 0.00 0.00 3.62
3843 5360 1.202830 TGCGTTACATGGTCCAAGGTT 60.203 47.619 0.00 0.00 0.00 3.50
3844 5361 0.398696 TGCGTTACATGGTCCAAGGT 59.601 50.000 0.00 0.00 0.00 3.50
3845 5362 1.529226 TTGCGTTACATGGTCCAAGG 58.471 50.000 0.00 0.00 0.00 3.61
3846 5363 3.500982 CAATTGCGTTACATGGTCCAAG 58.499 45.455 0.00 0.00 0.00 3.61
3847 5364 2.352225 GCAATTGCGTTACATGGTCCAA 60.352 45.455 15.87 0.00 0.00 3.53
3848 5365 1.201181 GCAATTGCGTTACATGGTCCA 59.799 47.619 15.87 0.00 0.00 4.02
3849 5366 1.908065 GCAATTGCGTTACATGGTCC 58.092 50.000 15.87 0.00 0.00 4.46
3861 5378 6.526325 TCACGATTTATACAAACAGCAATTGC 59.474 34.615 23.05 23.05 42.49 3.56
3862 5379 7.218773 CCTCACGATTTATACAAACAGCAATTG 59.781 37.037 0.00 0.00 0.00 2.32
3863 5380 7.094377 ACCTCACGATTTATACAAACAGCAATT 60.094 33.333 0.00 0.00 0.00 2.32
3864 5381 6.374333 ACCTCACGATTTATACAAACAGCAAT 59.626 34.615 0.00 0.00 0.00 3.56
3865 5382 5.703592 ACCTCACGATTTATACAAACAGCAA 59.296 36.000 0.00 0.00 0.00 3.91
3866 5383 5.242434 ACCTCACGATTTATACAAACAGCA 58.758 37.500 0.00 0.00 0.00 4.41
3867 5384 5.796350 ACCTCACGATTTATACAAACAGC 57.204 39.130 0.00 0.00 0.00 4.40
3883 5400 2.701073 ATATAGCGTGCGTACCTCAC 57.299 50.000 0.00 3.52 0.00 3.51
3884 5401 4.004982 TGATATATAGCGTGCGTACCTCA 58.995 43.478 0.00 0.00 0.00 3.86
3885 5402 4.611310 TGATATATAGCGTGCGTACCTC 57.389 45.455 0.00 0.00 0.00 3.85
3886 5403 5.578005 AATGATATATAGCGTGCGTACCT 57.422 39.130 0.00 0.00 0.00 3.08
3887 5404 6.309494 TCAAAATGATATATAGCGTGCGTACC 59.691 38.462 0.00 0.00 0.00 3.34
3888 5405 7.273188 TCAAAATGATATATAGCGTGCGTAC 57.727 36.000 0.00 0.00 0.00 3.67
3889 5406 7.222031 GGATCAAAATGATATATAGCGTGCGTA 59.778 37.037 0.00 0.00 37.20 4.42
3890 5407 6.036083 GGATCAAAATGATATATAGCGTGCGT 59.964 38.462 0.00 0.00 37.20 5.24
3891 5408 6.256539 AGGATCAAAATGATATATAGCGTGCG 59.743 38.462 0.00 0.00 37.20 5.34
3892 5409 7.545362 AGGATCAAAATGATATATAGCGTGC 57.455 36.000 0.00 0.00 37.20 5.34
3893 5410 8.393366 CCAAGGATCAAAATGATATATAGCGTG 58.607 37.037 0.00 0.00 37.20 5.34
3894 5411 8.321353 TCCAAGGATCAAAATGATATATAGCGT 58.679 33.333 0.00 0.00 37.20 5.07
3895 5412 8.722480 TCCAAGGATCAAAATGATATATAGCG 57.278 34.615 0.00 0.00 37.20 4.26
3896 5413 9.118300 CCTCCAAGGATCAAAATGATATATAGC 57.882 37.037 0.00 0.00 37.20 2.97
3913 5430 0.906756 CTCTGCCTGTCCTCCAAGGA 60.907 60.000 0.00 0.00 43.43 3.36
3914 5431 1.197430 ACTCTGCCTGTCCTCCAAGG 61.197 60.000 0.00 0.00 36.46 3.61
3915 5432 0.248843 GACTCTGCCTGTCCTCCAAG 59.751 60.000 0.00 0.00 0.00 3.61
3916 5433 0.471780 TGACTCTGCCTGTCCTCCAA 60.472 55.000 0.00 0.00 33.83 3.53
3917 5434 0.252421 ATGACTCTGCCTGTCCTCCA 60.252 55.000 0.00 0.00 33.83 3.86
3918 5435 0.908198 AATGACTCTGCCTGTCCTCC 59.092 55.000 0.00 0.00 33.83 4.30
3919 5436 3.526534 GTTAATGACTCTGCCTGTCCTC 58.473 50.000 0.00 0.00 33.83 3.71
3920 5437 2.237392 GGTTAATGACTCTGCCTGTCCT 59.763 50.000 0.00 0.00 33.83 3.85
3921 5438 2.237392 AGGTTAATGACTCTGCCTGTCC 59.763 50.000 0.00 0.00 33.83 4.02
3922 5439 3.618690 AGGTTAATGACTCTGCCTGTC 57.381 47.619 0.00 0.00 35.21 3.51
3923 5440 4.373156 AAAGGTTAATGACTCTGCCTGT 57.627 40.909 0.00 0.00 0.00 4.00
3924 5441 5.163713 GCTAAAAGGTTAATGACTCTGCCTG 60.164 44.000 0.00 0.00 0.00 4.85
3925 5442 4.944317 GCTAAAAGGTTAATGACTCTGCCT 59.056 41.667 0.00 0.00 0.00 4.75
3926 5443 4.944317 AGCTAAAAGGTTAATGACTCTGCC 59.056 41.667 0.00 0.00 0.00 4.85
3927 5444 5.877564 AGAGCTAAAAGGTTAATGACTCTGC 59.122 40.000 0.00 0.00 31.11 4.26
3928 5445 7.277539 CAGAGAGCTAAAAGGTTAATGACTCTG 59.722 40.741 0.00 0.00 39.79 3.35
3929 5446 7.038658 ACAGAGAGCTAAAAGGTTAATGACTCT 60.039 37.037 0.00 0.00 34.81 3.24
3930 5447 7.100409 ACAGAGAGCTAAAAGGTTAATGACTC 58.900 38.462 0.00 0.00 0.00 3.36
3931 5448 7.010339 ACAGAGAGCTAAAAGGTTAATGACT 57.990 36.000 0.00 0.00 0.00 3.41
3932 5449 7.674471 AACAGAGAGCTAAAAGGTTAATGAC 57.326 36.000 0.00 0.00 0.00 3.06
3933 5450 7.719633 ACAAACAGAGAGCTAAAAGGTTAATGA 59.280 33.333 0.00 0.00 0.00 2.57
3934 5451 7.875971 ACAAACAGAGAGCTAAAAGGTTAATG 58.124 34.615 0.00 0.00 0.00 1.90
3935 5452 9.740710 ATACAAACAGAGAGCTAAAAGGTTAAT 57.259 29.630 0.00 0.00 0.00 1.40
3936 5453 8.999431 CATACAAACAGAGAGCTAAAAGGTTAA 58.001 33.333 0.00 0.00 0.00 2.01
3937 5454 7.606456 CCATACAAACAGAGAGCTAAAAGGTTA 59.394 37.037 0.00 0.00 0.00 2.85
3938 5455 6.431234 CCATACAAACAGAGAGCTAAAAGGTT 59.569 38.462 0.00 0.00 0.00 3.50
3939 5456 5.940470 CCATACAAACAGAGAGCTAAAAGGT 59.060 40.000 0.00 0.00 0.00 3.50
3940 5457 5.163713 GCCATACAAACAGAGAGCTAAAAGG 60.164 44.000 0.00 0.00 0.00 3.11
3941 5458 5.645497 AGCCATACAAACAGAGAGCTAAAAG 59.355 40.000 0.00 0.00 0.00 2.27
3942 5459 5.412594 CAGCCATACAAACAGAGAGCTAAAA 59.587 40.000 0.00 0.00 0.00 1.52
3943 5460 4.937620 CAGCCATACAAACAGAGAGCTAAA 59.062 41.667 0.00 0.00 0.00 1.85
3944 5461 4.222810 TCAGCCATACAAACAGAGAGCTAA 59.777 41.667 0.00 0.00 0.00 3.09
3945 5462 3.769300 TCAGCCATACAAACAGAGAGCTA 59.231 43.478 0.00 0.00 0.00 3.32
3946 5463 2.568956 TCAGCCATACAAACAGAGAGCT 59.431 45.455 0.00 0.00 0.00 4.09
3947 5464 2.977914 TCAGCCATACAAACAGAGAGC 58.022 47.619 0.00 0.00 0.00 4.09
3948 5465 4.318332 TGTTCAGCCATACAAACAGAGAG 58.682 43.478 0.00 0.00 0.00 3.20
3949 5466 4.350368 TGTTCAGCCATACAAACAGAGA 57.650 40.909 0.00 0.00 0.00 3.10
3950 5467 6.108687 TCTATGTTCAGCCATACAAACAGAG 58.891 40.000 3.10 3.10 40.52 3.35
3951 5468 6.048732 TCTATGTTCAGCCATACAAACAGA 57.951 37.500 0.00 0.00 35.30 3.41
3952 5469 5.877012 ACTCTATGTTCAGCCATACAAACAG 59.123 40.000 0.00 0.00 35.30 3.16
3953 5470 5.643348 CACTCTATGTTCAGCCATACAAACA 59.357 40.000 0.00 0.00 36.19 2.83
3954 5471 5.643777 ACACTCTATGTTCAGCCATACAAAC 59.356 40.000 0.00 0.00 38.98 2.93
3955 5472 5.804639 ACACTCTATGTTCAGCCATACAAA 58.195 37.500 0.00 0.00 38.98 2.83
3956 5473 5.046663 TGACACTCTATGTTCAGCCATACAA 60.047 40.000 0.00 0.00 43.56 2.41
3957 5474 4.466015 TGACACTCTATGTTCAGCCATACA 59.534 41.667 0.00 0.00 43.56 2.29
3958 5475 5.011090 TGACACTCTATGTTCAGCCATAC 57.989 43.478 0.00 0.00 43.56 2.39
3959 5476 4.100035 CCTGACACTCTATGTTCAGCCATA 59.900 45.833 0.00 0.00 43.56 2.74
3960 5477 3.118482 CCTGACACTCTATGTTCAGCCAT 60.118 47.826 0.00 0.00 43.56 4.40
3961 5478 2.234661 CCTGACACTCTATGTTCAGCCA 59.765 50.000 0.00 0.00 43.56 4.75
3962 5479 2.419297 CCCTGACACTCTATGTTCAGCC 60.419 54.545 0.00 0.00 43.56 4.85
3963 5480 2.898705 CCCTGACACTCTATGTTCAGC 58.101 52.381 0.00 0.00 43.56 4.26
3964 5481 2.234661 TGCCCTGACACTCTATGTTCAG 59.765 50.000 0.00 0.00 43.56 3.02
3965 5482 2.234661 CTGCCCTGACACTCTATGTTCA 59.765 50.000 0.00 0.00 43.56 3.18
3966 5483 2.419297 CCTGCCCTGACACTCTATGTTC 60.419 54.545 0.00 0.00 43.56 3.18
3967 5484 1.556911 CCTGCCCTGACACTCTATGTT 59.443 52.381 0.00 0.00 43.56 2.71
3969 5486 1.134580 CACCTGCCCTGACACTCTATG 60.135 57.143 0.00 0.00 0.00 2.23
3970 5487 1.198713 CACCTGCCCTGACACTCTAT 58.801 55.000 0.00 0.00 0.00 1.98
3971 5488 0.114364 TCACCTGCCCTGACACTCTA 59.886 55.000 0.00 0.00 0.00 2.43
3972 5489 1.152247 TCACCTGCCCTGACACTCT 60.152 57.895 0.00 0.00 0.00 3.24
3973 5490 1.188219 TCTCACCTGCCCTGACACTC 61.188 60.000 0.00 0.00 0.00 3.51
3974 5491 0.764369 TTCTCACCTGCCCTGACACT 60.764 55.000 0.00 0.00 0.00 3.55
3975 5492 0.321122 CTTCTCACCTGCCCTGACAC 60.321 60.000 0.00 0.00 0.00 3.67
3976 5493 0.764369 ACTTCTCACCTGCCCTGACA 60.764 55.000 0.00 0.00 0.00 3.58
3977 5494 0.321122 CACTTCTCACCTGCCCTGAC 60.321 60.000 0.00 0.00 0.00 3.51
3978 5495 1.483595 CCACTTCTCACCTGCCCTGA 61.484 60.000 0.00 0.00 0.00 3.86
3979 5496 1.002868 CCACTTCTCACCTGCCCTG 60.003 63.158 0.00 0.00 0.00 4.45
3980 5497 1.152030 TCCACTTCTCACCTGCCCT 60.152 57.895 0.00 0.00 0.00 5.19
3981 5498 1.003233 GTCCACTTCTCACCTGCCC 60.003 63.158 0.00 0.00 0.00 5.36
3982 5499 1.374758 CGTCCACTTCTCACCTGCC 60.375 63.158 0.00 0.00 0.00 4.85
3983 5500 1.374758 CCGTCCACTTCTCACCTGC 60.375 63.158 0.00 0.00 0.00 4.85
3984 5501 1.185618 TCCCGTCCACTTCTCACCTG 61.186 60.000 0.00 0.00 0.00 4.00
3985 5502 0.471211 TTCCCGTCCACTTCTCACCT 60.471 55.000 0.00 0.00 0.00 4.00
3986 5503 0.037232 CTTCCCGTCCACTTCTCACC 60.037 60.000 0.00 0.00 0.00 4.02
3987 5504 0.037232 CCTTCCCGTCCACTTCTCAC 60.037 60.000 0.00 0.00 0.00 3.51
3988 5505 1.827399 GCCTTCCCGTCCACTTCTCA 61.827 60.000 0.00 0.00 0.00 3.27
3989 5506 1.079057 GCCTTCCCGTCCACTTCTC 60.079 63.158 0.00 0.00 0.00 2.87
3990 5507 1.831652 CTGCCTTCCCGTCCACTTCT 61.832 60.000 0.00 0.00 0.00 2.85
3991 5508 1.376037 CTGCCTTCCCGTCCACTTC 60.376 63.158 0.00 0.00 0.00 3.01
3992 5509 2.750350 CTGCCTTCCCGTCCACTT 59.250 61.111 0.00 0.00 0.00 3.16
3993 5510 3.322466 CCTGCCTTCCCGTCCACT 61.322 66.667 0.00 0.00 0.00 4.00
3996 5513 4.785453 CAGCCTGCCTTCCCGTCC 62.785 72.222 0.00 0.00 0.00 4.79
3997 5514 4.021925 ACAGCCTGCCTTCCCGTC 62.022 66.667 0.00 0.00 0.00 4.79
3998 5515 4.335647 CACAGCCTGCCTTCCCGT 62.336 66.667 0.00 0.00 0.00 5.28
3999 5516 3.850098 AACACAGCCTGCCTTCCCG 62.850 63.158 0.00 0.00 0.00 5.14
4000 5517 1.973812 GAACACAGCCTGCCTTCCC 60.974 63.158 0.00 0.00 0.00 3.97
4001 5518 2.328099 CGAACACAGCCTGCCTTCC 61.328 63.158 0.00 0.00 0.00 3.46
4002 5519 1.598130 ACGAACACAGCCTGCCTTC 60.598 57.895 0.00 0.00 0.00 3.46
4003 5520 1.893808 CACGAACACAGCCTGCCTT 60.894 57.895 0.00 0.00 0.00 4.35
4004 5521 2.281070 CACGAACACAGCCTGCCT 60.281 61.111 0.00 0.00 0.00 4.75
4005 5522 4.030452 GCACGAACACAGCCTGCC 62.030 66.667 0.00 0.00 0.00 4.85
4006 5523 2.959357 GAGCACGAACACAGCCTGC 61.959 63.158 0.00 0.00 0.00 4.85
4007 5524 2.320587 GGAGCACGAACACAGCCTG 61.321 63.158 0.00 0.00 0.00 4.85
4008 5525 2.031163 GGAGCACGAACACAGCCT 59.969 61.111 0.00 0.00 0.00 4.58
4019 5536 1.126846 CGAAATCAAGTGACGGAGCAC 59.873 52.381 0.00 0.00 39.05 4.40
4020 5537 1.000394 TCGAAATCAAGTGACGGAGCA 60.000 47.619 0.00 0.00 0.00 4.26
4021 5538 1.390463 GTCGAAATCAAGTGACGGAGC 59.610 52.381 0.00 0.00 0.00 4.70
4022 5539 2.663602 CAGTCGAAATCAAGTGACGGAG 59.336 50.000 0.00 0.00 36.49 4.63
4023 5540 2.295070 TCAGTCGAAATCAAGTGACGGA 59.705 45.455 0.00 0.00 36.49 4.69
4024 5541 2.672714 TCAGTCGAAATCAAGTGACGG 58.327 47.619 0.00 0.00 36.49 4.79
4025 5542 3.736252 AGTTCAGTCGAAATCAAGTGACG 59.264 43.478 0.00 0.00 36.49 4.35
4026 5543 4.609336 GCAGTTCAGTCGAAATCAAGTGAC 60.609 45.833 0.00 0.00 31.43 3.67
4027 5544 3.494626 GCAGTTCAGTCGAAATCAAGTGA 59.505 43.478 0.00 0.00 31.43 3.41
4028 5545 3.248363 TGCAGTTCAGTCGAAATCAAGTG 59.752 43.478 0.00 0.00 31.43 3.16
4029 5546 3.248602 GTGCAGTTCAGTCGAAATCAAGT 59.751 43.478 0.00 0.00 31.43 3.16
4030 5547 3.496130 AGTGCAGTTCAGTCGAAATCAAG 59.504 43.478 0.00 0.00 31.43 3.02
4031 5548 3.466836 AGTGCAGTTCAGTCGAAATCAA 58.533 40.909 0.00 0.00 31.43 2.57
4032 5549 3.111853 AGTGCAGTTCAGTCGAAATCA 57.888 42.857 0.00 0.00 31.43 2.57
4033 5550 3.364366 CCAAGTGCAGTTCAGTCGAAATC 60.364 47.826 3.08 0.00 31.43 2.17
4034 5551 2.549754 CCAAGTGCAGTTCAGTCGAAAT 59.450 45.455 3.08 0.00 31.43 2.17
4035 5552 1.939934 CCAAGTGCAGTTCAGTCGAAA 59.060 47.619 3.08 0.00 31.43 3.46
4036 5553 1.581934 CCAAGTGCAGTTCAGTCGAA 58.418 50.000 3.08 0.00 0.00 3.71
4037 5554 0.880278 GCCAAGTGCAGTTCAGTCGA 60.880 55.000 3.08 0.00 40.77 4.20
4038 5555 1.571460 GCCAAGTGCAGTTCAGTCG 59.429 57.895 3.08 0.00 40.77 4.18
4164 5682 5.205056 TGTACTTGTCCTGGGAAAAATGTT 58.795 37.500 0.00 0.00 0.00 2.71
4168 5686 5.055265 TCATGTACTTGTCCTGGGAAAAA 57.945 39.130 8.46 0.00 0.00 1.94
4202 5720 2.018542 TTGTAACTGGCGTATGCTCC 57.981 50.000 6.92 0.00 42.25 4.70
4205 5723 7.749539 AAATTTATTTGTAACTGGCGTATGC 57.250 32.000 0.00 0.00 41.71 3.14
4270 5788 2.414481 CTCAGTGAGAATTCCAGTTGCG 59.586 50.000 15.46 0.00 0.00 4.85
4275 5793 2.938756 GCCCACTCAGTGAGAATTCCAG 60.939 54.545 26.86 8.55 35.23 3.86
4372 5890 1.060122 GGTAGTACACGCGCAACATTC 59.940 52.381 5.73 0.00 0.00 2.67
4397 5915 7.149202 AGCCATCTATTATTAGTTTCACCCA 57.851 36.000 0.00 0.00 0.00 4.51
4498 6016 1.841663 ATGTCACAGTTTCGCGCACC 61.842 55.000 8.75 0.00 0.00 5.01
4514 6032 3.320826 GTGCCAAACCTAAAGGACAATGT 59.679 43.478 2.23 0.00 38.94 2.71
4529 6047 1.505807 CATCAATCGCCGTGCCAAA 59.494 52.632 0.00 0.00 0.00 3.28
4538 6056 1.134401 TCTCAACCTCCCATCAATCGC 60.134 52.381 0.00 0.00 0.00 4.58
4549 6067 4.223032 TCCTACCAACTCAATCTCAACCTC 59.777 45.833 0.00 0.00 0.00 3.85
4555 6073 3.735514 GCGAGTCCTACCAACTCAATCTC 60.736 52.174 4.36 0.00 42.68 2.75
4594 6112 4.886579 ACAAATTCTTCAATTGCACCCTC 58.113 39.130 0.00 0.00 32.18 4.30
4618 6136 2.236146 TGACGTGGATGCAAAGGAGTAT 59.764 45.455 0.00 0.00 0.00 2.12
4636 6154 2.614057 CGATCCTGGCTTGGTTTATGAC 59.386 50.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.