Multiple sequence alignment - TraesCS6A01G112000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G112000 chr6A 100.000 3284 0 0 1 3284 81110874 81107591 0.000000e+00 6065
1 TraesCS6A01G112000 chr6A 87.575 837 74 16 2420 3241 532800647 532799826 0.000000e+00 942
2 TraesCS6A01G112000 chr6A 92.076 631 48 2 2420 3050 435541227 435541855 0.000000e+00 887
3 TraesCS6A01G112000 chr6A 94.022 552 33 0 2420 2971 81103259 81102708 0.000000e+00 837
4 TraesCS6A01G112000 chr6A 94.150 547 31 1 2420 2966 435547639 435548184 0.000000e+00 832
5 TraesCS6A01G112000 chr6A 92.391 552 40 1 2420 2971 532795443 532794894 0.000000e+00 785
6 TraesCS6A01G112000 chr6A 88.968 281 31 0 1683 1963 80884817 80884537 6.740000e-92 348
7 TraesCS6A01G112000 chr6A 85.263 285 33 5 2132 2415 80884426 80884150 5.360000e-73 285
8 TraesCS6A01G112000 chr6A 88.587 184 19 1 1379 1560 80884994 80884811 4.270000e-54 222
9 TraesCS6A01G112000 chr6A 85.027 187 19 3 911 1097 80886805 80886628 7.240000e-42 182
10 TraesCS6A01G112000 chr6D 92.582 1092 46 16 1341 2419 63762480 63761411 0.000000e+00 1535
11 TraesCS6A01G112000 chr6D 89.708 583 43 10 704 1278 63763173 63762600 0.000000e+00 728
12 TraesCS6A01G112000 chr6D 89.953 428 31 8 1683 2099 63733748 63733322 2.880000e-150 542
13 TraesCS6A01G112000 chr6D 84.859 284 31 6 2135 2415 63733319 63733045 3.230000e-70 276
14 TraesCS6A01G112000 chr6D 88.596 228 24 1 1383 1608 63734013 63733786 3.230000e-70 276
15 TraesCS6A01G112000 chr6D 81.424 323 24 16 1 299 63763531 63763221 7.090000e-57 231
16 TraesCS6A01G112000 chr6D 87.255 102 8 4 61 161 63734340 63734243 9.630000e-21 111
17 TraesCS6A01G112000 chr7A 90.476 798 50 15 2420 3201 33869349 33870136 0.000000e+00 1029
18 TraesCS6A01G112000 chr4A 92.880 632 43 2 2419 3050 29783856 29784485 0.000000e+00 917
19 TraesCS6A01G112000 chr4A 94.043 554 32 1 2420 2973 29789057 29789609 0.000000e+00 839
20 TraesCS6A01G112000 chr5D 93.659 552 34 1 2420 2971 423009991 423009441 0.000000e+00 824
21 TraesCS6A01G112000 chr6B 85.040 742 78 16 1375 2099 137422144 137421419 0.000000e+00 725
22 TraesCS6A01G112000 chr6B 85.271 258 25 7 2132 2386 137421419 137421172 1.510000e-63 254
23 TraesCS6A01G112000 chr6B 83.333 204 19 8 59 259 137422837 137422646 1.210000e-39 174


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G112000 chr6A 81107591 81110874 3283 True 6065.000000 6065 100.000000 1 3284 1 chr6A.!!$R2 3283
1 TraesCS6A01G112000 chr6A 532799826 532800647 821 True 942.000000 942 87.575000 2420 3241 1 chr6A.!!$R4 821
2 TraesCS6A01G112000 chr6A 435541227 435541855 628 False 887.000000 887 92.076000 2420 3050 1 chr6A.!!$F1 630
3 TraesCS6A01G112000 chr6A 81102708 81103259 551 True 837.000000 837 94.022000 2420 2971 1 chr6A.!!$R1 551
4 TraesCS6A01G112000 chr6A 435547639 435548184 545 False 832.000000 832 94.150000 2420 2966 1 chr6A.!!$F2 546
5 TraesCS6A01G112000 chr6A 532794894 532795443 549 True 785.000000 785 92.391000 2420 2971 1 chr6A.!!$R3 551
6 TraesCS6A01G112000 chr6A 80884150 80886805 2655 True 259.250000 348 86.961250 911 2415 4 chr6A.!!$R5 1504
7 TraesCS6A01G112000 chr6D 63761411 63763531 2120 True 831.333333 1535 87.904667 1 2419 3 chr6D.!!$R2 2418
8 TraesCS6A01G112000 chr6D 63733045 63734340 1295 True 301.250000 542 87.665750 61 2415 4 chr6D.!!$R1 2354
9 TraesCS6A01G112000 chr7A 33869349 33870136 787 False 1029.000000 1029 90.476000 2420 3201 1 chr7A.!!$F1 781
10 TraesCS6A01G112000 chr4A 29783856 29784485 629 False 917.000000 917 92.880000 2419 3050 1 chr4A.!!$F1 631
11 TraesCS6A01G112000 chr4A 29789057 29789609 552 False 839.000000 839 94.043000 2420 2973 1 chr4A.!!$F2 553
12 TraesCS6A01G112000 chr5D 423009441 423009991 550 True 824.000000 824 93.659000 2420 2971 1 chr5D.!!$R1 551
13 TraesCS6A01G112000 chr6B 137421172 137422837 1665 True 384.333333 725 84.548000 59 2386 3 chr6B.!!$R1 2327


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 746 0.112412 AGTGAAACCCCGCTTTGGAT 59.888 50.0 0.0 0.0 37.52 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2359 3975 0.591488 CGCGCGTGATCAAGCTAGTA 60.591 55.0 27.21 0.0 33.62 1.82 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 114 4.742201 CGCCCGTGGTCAGGTCAG 62.742 72.222 0.00 0.00 0.00 3.51
85 115 4.394712 GCCCGTGGTCAGGTCAGG 62.395 72.222 0.00 0.00 0.00 3.86
86 116 2.923035 CCCGTGGTCAGGTCAGGT 60.923 66.667 0.00 0.00 0.00 4.00
127 157 0.179034 AGCCATCGCTCCTCCATTTC 60.179 55.000 0.00 0.00 43.95 2.17
128 158 1.169034 GCCATCGCTCCTCCATTTCC 61.169 60.000 0.00 0.00 0.00 3.13
129 159 0.536006 CCATCGCTCCTCCATTTCCC 60.536 60.000 0.00 0.00 0.00 3.97
144 174 3.489513 CCCCTCGGTCCATTCCCC 61.490 72.222 0.00 0.00 0.00 4.81
150 180 2.025699 CCTCGGTCCATTCCCCTTTTTA 60.026 50.000 0.00 0.00 0.00 1.52
161 191 1.381076 CCTTTTTAGGTGGCGGGGA 59.619 57.895 0.00 0.00 0.00 4.81
226 258 2.911143 CCCCGGATCCTCAGGTTG 59.089 66.667 10.75 0.00 29.18 3.77
235 267 3.198853 GGATCCTCAGGTTGAGCTAAACT 59.801 47.826 13.82 1.04 42.98 2.66
270 302 3.535280 TGATGTAGCAAGGCAACGATA 57.465 42.857 0.00 0.00 46.39 2.92
272 304 3.809279 TGATGTAGCAAGGCAACGATATG 59.191 43.478 0.00 0.00 46.39 1.78
274 306 1.873591 GTAGCAAGGCAACGATATGGG 59.126 52.381 0.00 0.00 46.39 4.00
279 311 0.179056 AGGCAACGATATGGGGTTCG 60.179 55.000 0.00 0.00 46.39 3.95
296 328 0.397394 TCGTTGGGGGTATGATCCGA 60.397 55.000 0.00 0.00 0.00 4.55
299 331 2.353406 CGTTGGGGGTATGATCCGATAC 60.353 54.545 0.00 0.00 0.00 2.24
300 332 2.635915 GTTGGGGGTATGATCCGATACA 59.364 50.000 5.76 0.00 31.38 2.29
301 333 2.536066 TGGGGGTATGATCCGATACAG 58.464 52.381 5.76 0.00 31.38 2.74
303 335 2.496470 GGGGGTATGATCCGATACAGTC 59.504 54.545 5.76 0.00 31.38 3.51
305 337 3.193691 GGGGTATGATCCGATACAGTCAG 59.806 52.174 5.76 0.00 31.38 3.51
306 338 3.827302 GGGTATGATCCGATACAGTCAGT 59.173 47.826 5.76 0.00 31.38 3.41
307 339 4.281182 GGGTATGATCCGATACAGTCAGTT 59.719 45.833 5.76 0.00 31.38 3.16
308 340 5.221461 GGGTATGATCCGATACAGTCAGTTT 60.221 44.000 5.76 0.00 31.38 2.66
309 341 6.281405 GGTATGATCCGATACAGTCAGTTTT 58.719 40.000 5.76 0.00 31.38 2.43
310 342 6.421202 GGTATGATCCGATACAGTCAGTTTTC 59.579 42.308 5.76 0.00 31.38 2.29
311 343 4.421058 TGATCCGATACAGTCAGTTTTCG 58.579 43.478 0.00 0.00 35.60 3.46
312 344 3.928727 TCCGATACAGTCAGTTTTCGT 57.071 42.857 0.00 0.00 34.65 3.85
313 345 4.247267 TCCGATACAGTCAGTTTTCGTT 57.753 40.909 0.00 0.00 34.65 3.85
314 346 3.985279 TCCGATACAGTCAGTTTTCGTTG 59.015 43.478 0.00 0.00 34.65 4.10
315 347 3.985279 CCGATACAGTCAGTTTTCGTTGA 59.015 43.478 0.00 0.00 34.65 3.18
316 348 4.625742 CCGATACAGTCAGTTTTCGTTGAT 59.374 41.667 0.00 0.00 34.65 2.57
317 349 5.120208 CCGATACAGTCAGTTTTCGTTGATT 59.880 40.000 0.00 0.00 34.65 2.57
318 350 6.009474 CGATACAGTCAGTTTTCGTTGATTG 58.991 40.000 0.00 0.00 37.16 2.67
319 351 3.952535 ACAGTCAGTTTTCGTTGATTGC 58.047 40.909 0.00 0.00 35.27 3.56
320 352 3.627577 ACAGTCAGTTTTCGTTGATTGCT 59.372 39.130 0.00 0.00 35.27 3.91
321 353 4.214437 CAGTCAGTTTTCGTTGATTGCTC 58.786 43.478 0.00 0.00 0.00 4.26
322 354 4.024556 CAGTCAGTTTTCGTTGATTGCTCT 60.025 41.667 0.00 0.00 0.00 4.09
323 355 5.177511 CAGTCAGTTTTCGTTGATTGCTCTA 59.822 40.000 0.00 0.00 0.00 2.43
324 356 5.177696 AGTCAGTTTTCGTTGATTGCTCTAC 59.822 40.000 0.00 0.00 0.00 2.59
336 368 8.813263 GTTGATTGCTCTACGAGAAAATAAAG 57.187 34.615 0.00 0.00 30.20 1.85
337 369 8.656849 GTTGATTGCTCTACGAGAAAATAAAGA 58.343 33.333 0.00 0.00 30.20 2.52
338 370 8.771920 TGATTGCTCTACGAGAAAATAAAGAA 57.228 30.769 0.00 0.00 30.20 2.52
339 371 8.873830 TGATTGCTCTACGAGAAAATAAAGAAG 58.126 33.333 0.00 0.00 30.20 2.85
340 372 8.779354 ATTGCTCTACGAGAAAATAAAGAAGT 57.221 30.769 0.00 0.00 30.20 3.01
341 373 8.603242 TTGCTCTACGAGAAAATAAAGAAGTT 57.397 30.769 0.00 0.00 0.00 2.66
342 374 8.603242 TGCTCTACGAGAAAATAAAGAAGTTT 57.397 30.769 0.00 0.00 0.00 2.66
343 375 9.052759 TGCTCTACGAGAAAATAAAGAAGTTTT 57.947 29.630 0.00 0.00 0.00 2.43
344 376 9.880064 GCTCTACGAGAAAATAAAGAAGTTTTT 57.120 29.630 0.00 0.00 0.00 1.94
363 395 4.695217 TTTTCTTAATTGCGTGCCCTAG 57.305 40.909 0.00 0.00 0.00 3.02
364 396 3.620427 TTCTTAATTGCGTGCCCTAGA 57.380 42.857 0.00 0.00 0.00 2.43
365 397 3.620427 TCTTAATTGCGTGCCCTAGAA 57.380 42.857 0.00 0.00 0.00 2.10
366 398 3.945346 TCTTAATTGCGTGCCCTAGAAA 58.055 40.909 0.00 0.00 0.00 2.52
367 399 4.328536 TCTTAATTGCGTGCCCTAGAAAA 58.671 39.130 0.00 0.00 0.00 2.29
368 400 4.394920 TCTTAATTGCGTGCCCTAGAAAAG 59.605 41.667 0.00 0.00 0.00 2.27
369 401 2.200373 ATTGCGTGCCCTAGAAAAGT 57.800 45.000 0.00 0.00 0.00 2.66
370 402 1.975660 TTGCGTGCCCTAGAAAAGTT 58.024 45.000 0.00 0.00 0.00 2.66
371 403 1.975660 TGCGTGCCCTAGAAAAGTTT 58.024 45.000 0.00 0.00 0.00 2.66
372 404 3.128852 TGCGTGCCCTAGAAAAGTTTA 57.871 42.857 0.00 0.00 0.00 2.01
373 405 2.809696 TGCGTGCCCTAGAAAAGTTTAC 59.190 45.455 0.00 0.00 0.00 2.01
374 406 2.809696 GCGTGCCCTAGAAAAGTTTACA 59.190 45.455 0.00 0.00 0.00 2.41
375 407 3.120304 GCGTGCCCTAGAAAAGTTTACAG 60.120 47.826 0.00 0.00 0.00 2.74
376 408 3.435671 CGTGCCCTAGAAAAGTTTACAGG 59.564 47.826 0.00 0.00 0.00 4.00
377 409 4.395625 GTGCCCTAGAAAAGTTTACAGGT 58.604 43.478 0.00 0.00 0.00 4.00
378 410 4.825634 GTGCCCTAGAAAAGTTTACAGGTT 59.174 41.667 0.00 0.00 0.00 3.50
379 411 5.301045 GTGCCCTAGAAAAGTTTACAGGTTT 59.699 40.000 0.00 0.00 0.00 3.27
380 412 5.533528 TGCCCTAGAAAAGTTTACAGGTTTC 59.466 40.000 0.00 0.00 0.00 2.78
381 413 5.334646 GCCCTAGAAAAGTTTACAGGTTTCG 60.335 44.000 0.00 0.00 35.58 3.46
382 414 5.993441 CCCTAGAAAAGTTTACAGGTTTCGA 59.007 40.000 0.00 0.00 35.58 3.71
383 415 6.653740 CCCTAGAAAAGTTTACAGGTTTCGAT 59.346 38.462 0.00 0.00 35.58 3.59
384 416 7.174426 CCCTAGAAAAGTTTACAGGTTTCGATT 59.826 37.037 0.00 0.00 35.58 3.34
385 417 8.228464 CCTAGAAAAGTTTACAGGTTTCGATTC 58.772 37.037 0.00 0.00 35.58 2.52
386 418 7.562454 AGAAAAGTTTACAGGTTTCGATTCA 57.438 32.000 0.00 0.00 35.58 2.57
387 419 7.639945 AGAAAAGTTTACAGGTTTCGATTCAG 58.360 34.615 0.00 0.00 35.58 3.02
388 420 7.497909 AGAAAAGTTTACAGGTTTCGATTCAGA 59.502 33.333 0.00 0.00 35.58 3.27
389 421 7.745620 AAAGTTTACAGGTTTCGATTCAGAT 57.254 32.000 0.00 0.00 0.00 2.90
390 422 7.745620 AAGTTTACAGGTTTCGATTCAGATT 57.254 32.000 0.00 0.00 0.00 2.40
391 423 8.842358 AAGTTTACAGGTTTCGATTCAGATTA 57.158 30.769 0.00 0.00 0.00 1.75
392 424 8.842358 AGTTTACAGGTTTCGATTCAGATTAA 57.158 30.769 0.00 0.00 0.00 1.40
393 425 9.280174 AGTTTACAGGTTTCGATTCAGATTAAA 57.720 29.630 0.00 0.00 0.00 1.52
394 426 9.887406 GTTTACAGGTTTCGATTCAGATTAAAA 57.113 29.630 0.00 0.00 0.00 1.52
396 428 7.145932 ACAGGTTTCGATTCAGATTAAAAGG 57.854 36.000 0.00 0.00 0.00 3.11
397 429 6.715264 ACAGGTTTCGATTCAGATTAAAAGGT 59.285 34.615 0.00 0.00 0.00 3.50
398 430 7.023575 CAGGTTTCGATTCAGATTAAAAGGTG 58.976 38.462 0.00 0.00 0.00 4.00
399 431 6.151144 AGGTTTCGATTCAGATTAAAAGGTGG 59.849 38.462 0.00 0.00 0.00 4.61
400 432 6.072119 GGTTTCGATTCAGATTAAAAGGTGGT 60.072 38.462 0.00 0.00 0.00 4.16
401 433 6.494893 TTCGATTCAGATTAAAAGGTGGTG 57.505 37.500 0.00 0.00 0.00 4.17
402 434 5.800296 TCGATTCAGATTAAAAGGTGGTGA 58.200 37.500 0.00 0.00 0.00 4.02
403 435 6.414732 TCGATTCAGATTAAAAGGTGGTGAT 58.585 36.000 0.00 0.00 0.00 3.06
404 436 6.884295 TCGATTCAGATTAAAAGGTGGTGATT 59.116 34.615 0.00 0.00 0.00 2.57
405 437 8.044309 TCGATTCAGATTAAAAGGTGGTGATTA 58.956 33.333 0.00 0.00 0.00 1.75
406 438 8.122952 CGATTCAGATTAAAAGGTGGTGATTAC 58.877 37.037 0.00 0.00 0.00 1.89
407 439 9.178758 GATTCAGATTAAAAGGTGGTGATTACT 57.821 33.333 0.00 0.00 0.00 2.24
409 441 9.667107 TTCAGATTAAAAGGTGGTGATTACTAG 57.333 33.333 0.00 0.00 0.00 2.57
410 442 9.042450 TCAGATTAAAAGGTGGTGATTACTAGA 57.958 33.333 0.00 0.00 0.00 2.43
411 443 9.667107 CAGATTAAAAGGTGGTGATTACTAGAA 57.333 33.333 0.00 0.00 0.00 2.10
412 444 9.892130 AGATTAAAAGGTGGTGATTACTAGAAG 57.108 33.333 0.00 0.00 0.00 2.85
413 445 9.110502 GATTAAAAGGTGGTGATTACTAGAAGG 57.889 37.037 0.00 0.00 0.00 3.46
414 446 6.449830 AAAAGGTGGTGATTACTAGAAGGT 57.550 37.500 0.00 0.00 0.00 3.50
415 447 7.563724 AAAAGGTGGTGATTACTAGAAGGTA 57.436 36.000 0.00 0.00 0.00 3.08
416 448 6.541934 AAGGTGGTGATTACTAGAAGGTAC 57.458 41.667 0.00 0.00 0.00 3.34
417 449 4.961099 AGGTGGTGATTACTAGAAGGTACC 59.039 45.833 2.73 2.73 0.00 3.34
418 450 4.100653 GGTGGTGATTACTAGAAGGTACCC 59.899 50.000 8.74 0.00 0.00 3.69
419 451 4.100653 GTGGTGATTACTAGAAGGTACCCC 59.899 50.000 8.74 0.36 0.00 4.95
420 452 4.015918 TGGTGATTACTAGAAGGTACCCCT 60.016 45.833 8.74 8.98 45.63 4.79
470 502 9.996554 TCTTTTGTCTACAAATCAATCTACTCA 57.003 29.630 8.96 0.00 44.30 3.41
474 506 9.516314 TTGTCTACAAATCAATCTACTCATACG 57.484 33.333 0.00 0.00 32.11 3.06
475 507 8.683615 TGTCTACAAATCAATCTACTCATACGT 58.316 33.333 0.00 0.00 0.00 3.57
476 508 9.517609 GTCTACAAATCAATCTACTCATACGTT 57.482 33.333 0.00 0.00 0.00 3.99
479 511 7.464358 ACAAATCAATCTACTCATACGTTTGC 58.536 34.615 0.00 0.00 0.00 3.68
480 512 7.119116 ACAAATCAATCTACTCATACGTTTGCA 59.881 33.333 0.00 0.00 0.00 4.08
481 513 6.834959 ATCAATCTACTCATACGTTTGCAG 57.165 37.500 0.00 0.00 0.00 4.41
482 514 5.109210 TCAATCTACTCATACGTTTGCAGG 58.891 41.667 0.00 0.00 0.00 4.85
483 515 2.888594 TCTACTCATACGTTTGCAGGC 58.111 47.619 0.00 0.00 0.00 4.85
484 516 2.496070 TCTACTCATACGTTTGCAGGCT 59.504 45.455 0.00 0.00 0.00 4.58
485 517 3.697542 TCTACTCATACGTTTGCAGGCTA 59.302 43.478 0.00 0.00 0.00 3.93
486 518 3.328382 ACTCATACGTTTGCAGGCTAA 57.672 42.857 0.00 0.00 0.00 3.09
487 519 3.873910 ACTCATACGTTTGCAGGCTAAT 58.126 40.909 0.00 0.00 0.00 1.73
488 520 5.018539 ACTCATACGTTTGCAGGCTAATA 57.981 39.130 0.00 0.00 0.00 0.98
489 521 5.611374 ACTCATACGTTTGCAGGCTAATAT 58.389 37.500 0.00 0.00 0.00 1.28
490 522 5.466728 ACTCATACGTTTGCAGGCTAATATG 59.533 40.000 0.00 0.00 0.00 1.78
491 523 5.606505 TCATACGTTTGCAGGCTAATATGA 58.393 37.500 0.00 7.30 0.00 2.15
492 524 5.465390 TCATACGTTTGCAGGCTAATATGAC 59.535 40.000 0.00 0.00 0.00 3.06
493 525 2.607635 ACGTTTGCAGGCTAATATGACG 59.392 45.455 0.00 0.00 0.00 4.35
494 526 2.863740 CGTTTGCAGGCTAATATGACGA 59.136 45.455 0.00 0.00 0.00 4.20
495 527 3.494626 CGTTTGCAGGCTAATATGACGAT 59.505 43.478 0.00 0.00 0.00 3.73
496 528 4.684242 CGTTTGCAGGCTAATATGACGATA 59.316 41.667 0.00 0.00 0.00 2.92
497 529 5.176774 CGTTTGCAGGCTAATATGACGATAA 59.823 40.000 0.00 0.00 0.00 1.75
498 530 6.363473 GTTTGCAGGCTAATATGACGATAAC 58.637 40.000 0.00 0.00 0.00 1.89
499 531 4.566004 TGCAGGCTAATATGACGATAACC 58.434 43.478 0.00 0.00 0.00 2.85
500 532 4.283467 TGCAGGCTAATATGACGATAACCT 59.717 41.667 0.00 0.00 0.00 3.50
501 533 5.221641 TGCAGGCTAATATGACGATAACCTT 60.222 40.000 0.00 0.00 0.00 3.50
502 534 5.701290 GCAGGCTAATATGACGATAACCTTT 59.299 40.000 0.00 0.00 0.00 3.11
503 535 6.204882 GCAGGCTAATATGACGATAACCTTTT 59.795 38.462 0.00 0.00 0.00 2.27
504 536 7.386848 GCAGGCTAATATGACGATAACCTTTTA 59.613 37.037 0.00 0.00 0.00 1.52
505 537 9.268268 CAGGCTAATATGACGATAACCTTTTAA 57.732 33.333 0.00 0.00 0.00 1.52
506 538 9.841295 AGGCTAATATGACGATAACCTTTTAAA 57.159 29.630 0.00 0.00 0.00 1.52
541 573 7.967890 AAGATTCATGCAAACTTTTAAAGGG 57.032 32.000 9.64 0.00 0.00 3.95
542 574 6.466812 AGATTCATGCAAACTTTTAAAGGGG 58.533 36.000 9.64 0.00 0.00 4.79
543 575 5.622346 TTCATGCAAACTTTTAAAGGGGT 57.378 34.783 9.64 0.00 0.00 4.95
544 576 5.622346 TCATGCAAACTTTTAAAGGGGTT 57.378 34.783 9.64 0.76 0.00 4.11
545 577 5.363939 TCATGCAAACTTTTAAAGGGGTTG 58.636 37.500 9.64 13.31 0.00 3.77
546 578 4.828072 TGCAAACTTTTAAAGGGGTTGT 57.172 36.364 16.72 0.00 0.00 3.32
547 579 5.934402 TGCAAACTTTTAAAGGGGTTGTA 57.066 34.783 16.72 12.30 0.00 2.41
548 580 5.662456 TGCAAACTTTTAAAGGGGTTGTAC 58.338 37.500 16.72 7.04 0.00 2.90
549 581 5.051816 GCAAACTTTTAAAGGGGTTGTACC 58.948 41.667 16.72 0.00 37.60 3.34
550 582 5.395435 GCAAACTTTTAAAGGGGTTGTACCA 60.395 40.000 16.72 0.00 41.02 3.25
551 583 6.641474 CAAACTTTTAAAGGGGTTGTACCAA 58.359 36.000 9.64 0.00 41.02 3.67
552 584 5.857471 ACTTTTAAAGGGGTTGTACCAAC 57.143 39.130 9.64 0.00 41.02 3.77
553 585 4.338964 ACTTTTAAAGGGGTTGTACCAACG 59.661 41.667 9.64 0.00 41.02 4.10
554 586 1.894881 TAAAGGGGTTGTACCAACGC 58.105 50.000 13.79 13.79 41.02 4.84
555 587 1.167781 AAAGGGGTTGTACCAACGCG 61.168 55.000 3.53 3.53 41.02 6.01
556 588 3.729698 GGGGTTGTACCAACGCGC 61.730 66.667 5.73 0.00 41.02 6.86
557 589 2.973600 GGGTTGTACCAACGCGCA 60.974 61.111 5.73 0.00 41.02 6.09
558 590 2.544698 GGGTTGTACCAACGCGCAA 61.545 57.895 5.73 0.00 41.02 4.85
559 591 1.355916 GGTTGTACCAACGCGCAAA 59.644 52.632 5.73 0.00 38.42 3.68
560 592 0.248539 GGTTGTACCAACGCGCAAAA 60.249 50.000 5.73 0.00 38.42 2.44
561 593 0.841356 GTTGTACCAACGCGCAAAAC 59.159 50.000 5.73 0.00 0.00 2.43
562 594 0.450583 TTGTACCAACGCGCAAAACA 59.549 45.000 5.73 1.33 0.00 2.83
563 595 0.248134 TGTACCAACGCGCAAAACAC 60.248 50.000 5.73 0.00 0.00 3.32
590 622 5.163814 GCGTGAGATGAGCTTAGACAAAAAT 60.164 40.000 0.00 0.00 0.00 1.82
591 623 6.036083 GCGTGAGATGAGCTTAGACAAAAATA 59.964 38.462 0.00 0.00 0.00 1.40
599 634 9.624373 ATGAGCTTAGACAAAAATATCTCATGT 57.376 29.630 0.00 0.00 37.38 3.21
606 641 7.310664 AGACAAAAATATCTCATGTGTGCTTG 58.689 34.615 0.00 0.00 0.00 4.01
607 642 7.175467 AGACAAAAATATCTCATGTGTGCTTGA 59.825 33.333 0.00 0.00 0.00 3.02
611 646 9.715121 AAAAATATCTCATGTGTGCTTGAAATT 57.285 25.926 0.00 0.00 0.00 1.82
612 647 8.697846 AAATATCTCATGTGTGCTTGAAATTG 57.302 30.769 0.00 0.00 0.00 2.32
613 648 5.970317 ATCTCATGTGTGCTTGAAATTGA 57.030 34.783 0.00 0.00 0.00 2.57
614 649 5.112220 TCTCATGTGTGCTTGAAATTGAC 57.888 39.130 0.00 0.00 0.00 3.18
615 650 4.823442 TCTCATGTGTGCTTGAAATTGACT 59.177 37.500 0.00 0.00 0.00 3.41
616 651 5.300034 TCTCATGTGTGCTTGAAATTGACTT 59.700 36.000 0.00 0.00 0.00 3.01
617 652 5.283294 TCATGTGTGCTTGAAATTGACTTG 58.717 37.500 0.00 0.00 0.00 3.16
618 653 3.446799 TGTGTGCTTGAAATTGACTTGC 58.553 40.909 0.00 0.00 0.00 4.01
619 654 2.468777 GTGTGCTTGAAATTGACTTGCG 59.531 45.455 0.00 0.00 0.00 4.85
620 655 1.453148 GTGCTTGAAATTGACTTGCGC 59.547 47.619 0.00 0.00 0.00 6.09
621 656 1.063031 GCTTGAAATTGACTTGCGCC 58.937 50.000 4.18 0.00 0.00 6.53
622 657 1.602668 GCTTGAAATTGACTTGCGCCA 60.603 47.619 4.18 0.00 0.00 5.69
623 658 2.741612 CTTGAAATTGACTTGCGCCAA 58.258 42.857 4.18 1.27 0.00 4.52
624 659 3.319755 CTTGAAATTGACTTGCGCCAAT 58.680 40.909 4.18 4.12 34.75 3.16
625 660 4.484236 CTTGAAATTGACTTGCGCCAATA 58.516 39.130 4.18 0.00 33.13 1.90
626 661 3.832276 TGAAATTGACTTGCGCCAATAC 58.168 40.909 4.18 6.17 33.13 1.89
627 662 3.505680 TGAAATTGACTTGCGCCAATACT 59.494 39.130 4.18 0.00 33.13 2.12
628 663 4.022416 TGAAATTGACTTGCGCCAATACTT 60.022 37.500 4.18 0.00 33.13 2.24
629 664 2.987413 TTGACTTGCGCCAATACTTG 57.013 45.000 4.18 0.00 0.00 3.16
630 665 1.890876 TGACTTGCGCCAATACTTGT 58.109 45.000 4.18 0.00 0.00 3.16
631 666 3.046968 TGACTTGCGCCAATACTTGTA 57.953 42.857 4.18 0.00 0.00 2.41
632 667 3.000041 TGACTTGCGCCAATACTTGTAG 59.000 45.455 4.18 0.00 0.00 2.74
633 668 1.737793 ACTTGCGCCAATACTTGTAGC 59.262 47.619 4.18 0.00 33.60 3.58
640 675 4.616181 GCCAATACTTGTAGCGATTGTT 57.384 40.909 0.00 0.00 0.00 2.83
641 676 4.342772 GCCAATACTTGTAGCGATTGTTG 58.657 43.478 0.00 0.00 0.00 3.33
642 677 4.094294 GCCAATACTTGTAGCGATTGTTGA 59.906 41.667 0.00 0.00 0.00 3.18
643 678 5.220854 GCCAATACTTGTAGCGATTGTTGAT 60.221 40.000 0.00 0.00 0.00 2.57
644 679 6.194463 CCAATACTTGTAGCGATTGTTGATG 58.806 40.000 0.00 0.00 0.00 3.07
645 680 6.037062 CCAATACTTGTAGCGATTGTTGATGA 59.963 38.462 0.00 0.00 0.00 2.92
646 681 6.834959 ATACTTGTAGCGATTGTTGATGAG 57.165 37.500 0.00 0.00 0.00 2.90
647 682 3.372206 ACTTGTAGCGATTGTTGATGAGC 59.628 43.478 0.00 0.00 0.00 4.26
648 683 3.251479 TGTAGCGATTGTTGATGAGCT 57.749 42.857 0.00 0.00 38.57 4.09
649 684 4.385358 TGTAGCGATTGTTGATGAGCTA 57.615 40.909 0.00 0.00 36.30 3.32
650 685 4.754322 TGTAGCGATTGTTGATGAGCTAA 58.246 39.130 0.00 0.00 38.66 3.09
651 686 4.805719 TGTAGCGATTGTTGATGAGCTAAG 59.194 41.667 0.00 0.00 38.66 2.18
652 687 4.128925 AGCGATTGTTGATGAGCTAAGA 57.871 40.909 0.00 0.00 32.73 2.10
653 688 4.701765 AGCGATTGTTGATGAGCTAAGAT 58.298 39.130 0.00 0.00 32.73 2.40
654 689 4.510711 AGCGATTGTTGATGAGCTAAGATG 59.489 41.667 0.00 0.00 32.73 2.90
655 690 4.272018 GCGATTGTTGATGAGCTAAGATGT 59.728 41.667 0.00 0.00 0.00 3.06
656 691 5.735324 CGATTGTTGATGAGCTAAGATGTG 58.265 41.667 0.00 0.00 0.00 3.21
657 692 5.521372 CGATTGTTGATGAGCTAAGATGTGA 59.479 40.000 0.00 0.00 0.00 3.58
658 693 6.036408 CGATTGTTGATGAGCTAAGATGTGAA 59.964 38.462 0.00 0.00 0.00 3.18
659 694 6.732531 TTGTTGATGAGCTAAGATGTGAAG 57.267 37.500 0.00 0.00 0.00 3.02
660 695 4.633126 TGTTGATGAGCTAAGATGTGAAGC 59.367 41.667 0.00 0.00 36.48 3.86
661 696 3.801698 TGATGAGCTAAGATGTGAAGCC 58.198 45.455 0.00 0.00 36.92 4.35
662 697 3.198417 TGATGAGCTAAGATGTGAAGCCA 59.802 43.478 0.00 0.00 36.92 4.75
663 698 3.701205 TGAGCTAAGATGTGAAGCCAA 57.299 42.857 0.00 0.00 36.92 4.52
664 699 4.019792 TGAGCTAAGATGTGAAGCCAAA 57.980 40.909 0.00 0.00 36.92 3.28
665 700 4.592942 TGAGCTAAGATGTGAAGCCAAAT 58.407 39.130 0.00 0.00 36.92 2.32
666 701 5.744171 TGAGCTAAGATGTGAAGCCAAATA 58.256 37.500 0.00 0.00 36.92 1.40
667 702 6.359804 TGAGCTAAGATGTGAAGCCAAATAT 58.640 36.000 0.00 0.00 36.92 1.28
668 703 7.508687 TGAGCTAAGATGTGAAGCCAAATATA 58.491 34.615 0.00 0.00 36.92 0.86
669 704 7.992608 TGAGCTAAGATGTGAAGCCAAATATAA 59.007 33.333 0.00 0.00 36.92 0.98
670 705 8.388484 AGCTAAGATGTGAAGCCAAATATAAG 57.612 34.615 0.00 0.00 36.92 1.73
671 706 7.995488 AGCTAAGATGTGAAGCCAAATATAAGT 59.005 33.333 0.00 0.00 36.92 2.24
672 707 9.273016 GCTAAGATGTGAAGCCAAATATAAGTA 57.727 33.333 0.00 0.00 0.00 2.24
676 711 9.988815 AGATGTGAAGCCAAATATAAGTACTAG 57.011 33.333 0.00 0.00 0.00 2.57
677 712 9.209175 GATGTGAAGCCAAATATAAGTACTAGG 57.791 37.037 0.00 0.00 0.00 3.02
678 713 8.086143 TGTGAAGCCAAATATAAGTACTAGGT 57.914 34.615 0.00 0.00 0.00 3.08
679 714 9.204337 TGTGAAGCCAAATATAAGTACTAGGTA 57.796 33.333 0.00 0.00 0.00 3.08
700 735 8.850007 AGGTATCTTTTCTAAAGAGTGAAACC 57.150 34.615 7.78 8.98 37.80 3.27
701 736 7.883833 AGGTATCTTTTCTAAAGAGTGAAACCC 59.116 37.037 7.78 1.38 37.80 4.11
702 737 7.120873 GGTATCTTTTCTAAAGAGTGAAACCCC 59.879 40.741 7.78 0.00 37.80 4.95
703 738 5.061179 TCTTTTCTAAAGAGTGAAACCCCG 58.939 41.667 0.00 0.00 37.80 5.73
704 739 2.467566 TCTAAAGAGTGAAACCCCGC 57.532 50.000 0.00 0.00 37.80 6.13
705 740 1.975680 TCTAAAGAGTGAAACCCCGCT 59.024 47.619 0.00 0.00 37.80 5.52
706 741 2.370849 TCTAAAGAGTGAAACCCCGCTT 59.629 45.455 0.00 0.00 37.80 4.68
707 742 2.067365 AAAGAGTGAAACCCCGCTTT 57.933 45.000 0.00 0.00 37.80 3.51
708 743 1.318576 AAGAGTGAAACCCCGCTTTG 58.681 50.000 0.00 0.00 37.80 2.77
709 744 0.537371 AGAGTGAAACCCCGCTTTGG 60.537 55.000 0.00 0.00 37.80 3.28
710 745 0.536460 GAGTGAAACCCCGCTTTGGA 60.536 55.000 0.00 0.00 37.52 3.53
711 746 0.112412 AGTGAAACCCCGCTTTGGAT 59.888 50.000 0.00 0.00 37.52 3.41
712 747 1.353022 AGTGAAACCCCGCTTTGGATA 59.647 47.619 0.00 0.00 37.52 2.59
713 748 2.164338 GTGAAACCCCGCTTTGGATAA 58.836 47.619 0.00 0.00 42.00 1.75
714 749 2.758423 GTGAAACCCCGCTTTGGATAAT 59.242 45.455 0.00 0.00 42.00 1.28
743 785 3.069586 CGAGCCATGGATCCAAGTAGTAA 59.930 47.826 23.90 0.00 0.00 2.24
745 787 3.136626 AGCCATGGATCCAAGTAGTAACC 59.863 47.826 20.67 0.00 0.00 2.85
746 788 3.118038 GCCATGGATCCAAGTAGTAACCA 60.118 47.826 20.67 0.00 0.00 3.67
747 789 4.708177 CCATGGATCCAAGTAGTAACCAG 58.292 47.826 20.67 0.00 0.00 4.00
748 790 4.444876 CCATGGATCCAAGTAGTAACCAGG 60.445 50.000 20.67 2.86 0.00 4.45
765 807 2.270986 GGAGTGGCAGTTTGGGCAG 61.271 63.158 0.00 0.00 44.63 4.85
792 834 3.126001 TGGAAACACTAGTCTTGCTGG 57.874 47.619 0.00 0.00 33.40 4.85
793 835 2.438021 TGGAAACACTAGTCTTGCTGGT 59.562 45.455 0.00 0.00 39.65 4.00
795 837 4.101898 TGGAAACACTAGTCTTGCTGGTAA 59.898 41.667 0.00 0.00 36.75 2.85
796 838 4.451435 GGAAACACTAGTCTTGCTGGTAAC 59.549 45.833 0.00 0.00 36.75 2.50
797 839 4.957684 AACACTAGTCTTGCTGGTAACT 57.042 40.909 0.00 0.00 36.75 2.24
798 840 4.258702 ACACTAGTCTTGCTGGTAACTG 57.741 45.455 0.00 0.00 36.75 3.16
826 868 3.705604 AGTTTGCCAAGTGTCAAAATCG 58.294 40.909 0.00 0.00 34.44 3.34
849 894 6.531594 TCGTATCTCAACTACAGAATGCAAAG 59.468 38.462 0.00 0.00 42.53 2.77
851 896 6.981762 ATCTCAACTACAGAATGCAAAGAG 57.018 37.500 0.00 0.00 42.53 2.85
862 907 0.610174 TGCAAAGAGAGGATGCTCGT 59.390 50.000 8.74 0.00 40.66 4.18
868 913 1.379977 AGAGGATGCTCGTCGGGAA 60.380 57.895 8.74 0.00 36.48 3.97
876 921 1.214589 CTCGTCGGGAAATGTCGGT 59.785 57.895 0.00 0.00 0.00 4.69
889 934 1.686355 TGTCGGTTTGCATGGTTTCT 58.314 45.000 0.00 0.00 0.00 2.52
915 961 6.916387 GTCATTTTGTCATCAGATATGGCTTG 59.084 38.462 0.00 0.00 0.00 4.01
916 962 5.840243 TTTTGTCATCAGATATGGCTTGG 57.160 39.130 0.00 0.00 0.00 3.61
920 966 4.202295 TGTCATCAGATATGGCTTGGAGTC 60.202 45.833 0.00 0.00 0.00 3.36
1006 1052 1.318158 CCTTTGCCAGAGGATGCCAC 61.318 60.000 0.00 0.00 36.33 5.01
1031 1077 7.016153 TCATTAAGGTTTGCTCTTTCCTCTA 57.984 36.000 0.00 0.00 0.00 2.43
1036 1082 4.348168 AGGTTTGCTCTTTCCTCTAGACAA 59.652 41.667 0.00 0.00 0.00 3.18
1041 1087 6.798427 TGCTCTTTCCTCTAGACAATATGT 57.202 37.500 0.00 0.00 0.00 2.29
1066 1114 7.575414 TTTTTCAAGCAGTGTATGTTTCCTA 57.425 32.000 0.00 0.00 28.53 2.94
1075 1123 7.503566 AGCAGTGTATGTTTCCTAATGCATAAT 59.496 33.333 0.00 0.00 33.69 1.28
1131 1187 1.068748 GCATTTCTGACCACTGCACTG 60.069 52.381 0.00 0.00 33.13 3.66
1138 1194 1.072173 TGACCACTGCACTGTAATGCT 59.928 47.619 0.00 0.00 46.28 3.79
1171 1227 0.034670 GCAGAGCCTCCTCCAAATGT 60.035 55.000 0.00 0.00 38.96 2.71
1273 1333 7.119262 GCTCTGGCTAGTTATCAAAGTTTGTAA 59.881 37.037 15.08 10.11 35.22 2.41
1274 1334 8.319143 TCTGGCTAGTTATCAAAGTTTGTAAC 57.681 34.615 21.17 21.17 32.40 2.50
1275 1335 8.154856 TCTGGCTAGTTATCAAAGTTTGTAACT 58.845 33.333 27.51 27.51 45.46 2.24
1276 1336 8.094798 TGGCTAGTTATCAAAGTTTGTAACTG 57.905 34.615 29.64 24.12 41.91 3.16
1277 1337 7.717875 TGGCTAGTTATCAAAGTTTGTAACTGT 59.282 33.333 29.64 19.05 41.91 3.55
1278 1338 8.015658 GGCTAGTTATCAAAGTTTGTAACTGTG 58.984 37.037 29.64 25.24 46.12 3.66
1279 1339 7.534239 GCTAGTTATCAAAGTTTGTAACTGTGC 59.466 37.037 29.64 27.87 44.71 4.57
1280 1340 6.735130 AGTTATCAAAGTTTGTAACTGTGCC 58.265 36.000 25.84 10.98 44.71 5.01
1281 1341 4.584327 ATCAAAGTTTGTAACTGTGCCC 57.416 40.909 15.08 0.00 44.71 5.36
1282 1342 2.691011 TCAAAGTTTGTAACTGTGCCCC 59.309 45.455 15.08 0.00 44.71 5.80
1283 1343 1.699730 AAGTTTGTAACTGTGCCCCC 58.300 50.000 0.00 0.00 41.91 5.40
1284 1344 0.536460 AGTTTGTAACTGTGCCCCCG 60.536 55.000 0.00 0.00 41.01 5.73
1285 1345 1.899534 TTTGTAACTGTGCCCCCGC 60.900 57.895 0.00 0.00 0.00 6.13
1286 1346 2.626255 TTTGTAACTGTGCCCCCGCA 62.626 55.000 0.00 0.00 44.78 5.69
1454 3046 2.109834 TGGTGGTGGTCCATTCATCTTT 59.890 45.455 0.00 0.00 46.20 2.52
1509 3101 3.485463 TTAAATGAGAGCGGGTATGGG 57.515 47.619 0.00 0.00 0.00 4.00
1517 3109 2.775384 AGAGCGGGTATGGGTGAATTTA 59.225 45.455 0.00 0.00 0.00 1.40
1537 3129 3.641434 AGCTCAGCCAAATGATAGTGT 57.359 42.857 0.00 0.00 0.00 3.55
1573 3170 4.888326 ACATTGTTGCATGGGTATTGTT 57.112 36.364 0.00 0.00 0.00 2.83
1588 3185 9.780186 ATGGGTATTGTTCTATTAGCTTTAGAC 57.220 33.333 0.00 0.00 0.00 2.59
1596 3193 8.540388 TGTTCTATTAGCTTTAGACAGTTGGAT 58.460 33.333 0.00 0.00 0.00 3.41
1603 3200 7.736447 AGCTTTAGACAGTTGGATATTATGC 57.264 36.000 0.00 0.00 0.00 3.14
1609 3206 7.559335 AGACAGTTGGATATTATGCCTATGA 57.441 36.000 0.00 0.00 0.00 2.15
1610 3207 8.155620 AGACAGTTGGATATTATGCCTATGAT 57.844 34.615 0.00 0.00 0.00 2.45
1611 3208 8.045507 AGACAGTTGGATATTATGCCTATGATG 58.954 37.037 0.00 0.00 0.00 3.07
1612 3209 6.600822 ACAGTTGGATATTATGCCTATGATGC 59.399 38.462 0.00 0.00 0.00 3.91
1615 3212 6.077202 TGGATATTATGCCTATGATGCCAA 57.923 37.500 0.00 0.00 0.00 4.52
1616 3213 6.492274 TGGATATTATGCCTATGATGCCAAA 58.508 36.000 0.00 0.00 0.00 3.28
1619 3216 7.069085 GGATATTATGCCTATGATGCCAAACAT 59.931 37.037 0.00 0.00 43.54 2.71
1620 3217 5.456548 TTATGCCTATGATGCCAAACATG 57.543 39.130 0.00 0.00 39.84 3.21
1621 3218 2.033372 TGCCTATGATGCCAAACATGG 58.967 47.619 0.00 0.00 39.84 3.66
1623 3220 2.669781 CCTATGATGCCAAACATGGGT 58.330 47.619 0.00 0.00 39.84 4.51
1624 3221 3.831323 CCTATGATGCCAAACATGGGTA 58.169 45.455 0.00 0.00 39.84 3.69
1625 3222 4.410099 CCTATGATGCCAAACATGGGTAT 58.590 43.478 0.00 0.00 39.84 2.73
1626 3223 4.834496 CCTATGATGCCAAACATGGGTATT 59.166 41.667 0.00 0.00 39.84 1.89
1627 3224 4.675976 ATGATGCCAAACATGGGTATTG 57.324 40.909 0.00 0.00 39.84 1.90
1628 3225 3.439154 TGATGCCAAACATGGGTATTGT 58.561 40.909 0.00 0.00 39.84 2.71
1629 3226 3.837146 TGATGCCAAACATGGGTATTGTT 59.163 39.130 0.00 0.00 39.84 2.83
1630 3227 3.951775 TGCCAAACATGGGTATTGTTC 57.048 42.857 0.00 0.00 36.32 3.18
1701 3298 8.404000 GTTCATTCATTCTTCTGCATGTTATCT 58.596 33.333 0.00 0.00 0.00 1.98
1963 3567 6.545298 GGCAATATGAACTTCTCAAGATTCCT 59.455 38.462 0.00 0.00 37.67 3.36
2054 3664 9.206870 ACAAATGTGTGCATATTTCCTTAAAAG 57.793 29.630 4.32 0.00 36.31 2.27
2055 3665 8.658609 CAAATGTGTGCATATTTCCTTAAAAGG 58.341 33.333 2.09 2.09 40.02 3.11
2067 3683 8.651589 ATTTCCTTAAAAGGGAAGTTTAGGAG 57.348 34.615 8.43 0.00 46.59 3.69
2076 3692 2.306219 GGAAGTTTAGGAGACTGCCCTT 59.694 50.000 0.00 0.00 43.88 3.95
2210 3826 3.943381 GTGATCAGCATCAAGTCCATTCA 59.057 43.478 0.00 0.00 40.90 2.57
2285 3901 3.274288 GTTTAGCATCAAGGCTGTAGCT 58.726 45.455 3.63 8.65 45.44 3.32
2359 3975 6.327386 TGTGAGGGCTAAAATTCTCCTAAT 57.673 37.500 0.00 0.00 0.00 1.73
2536 4152 4.340381 GGAATTGCTCTTGCTGGAATGTAT 59.660 41.667 0.00 0.00 40.48 2.29
2541 4157 6.194796 TGCTCTTGCTGGAATGTATTTAAC 57.805 37.500 0.00 0.00 40.48 2.01
2560 4176 4.935352 AACTGTTGCATGCTTAAGGAAA 57.065 36.364 20.33 0.00 0.00 3.13
2723 4339 0.242555 TATGACGCGTTGCTCACAGA 59.757 50.000 15.53 0.00 0.00 3.41
2793 4409 8.974060 ATTATATCGTGGTTGGTAGTTTGATT 57.026 30.769 0.00 0.00 0.00 2.57
2886 4502 7.750947 AAACACAGTATAAGAAGGTCCCTAT 57.249 36.000 0.00 0.00 0.00 2.57
2895 4512 0.949582 AAGGTCCCTATCCCCTAGCA 59.050 55.000 0.00 0.00 0.00 3.49
2921 4538 1.378882 ATGCGATTGTGAGCGGCATT 61.379 50.000 1.45 0.00 34.72 3.56
2937 4554 1.198178 GCATTACGGAAAAGCACGGAA 59.802 47.619 3.52 0.00 37.33 4.30
2938 4555 2.350964 GCATTACGGAAAAGCACGGAAA 60.351 45.455 3.52 0.00 36.39 3.13
2947 4564 2.891191 AAGCACGGAAAAATAGGGGA 57.109 45.000 0.00 0.00 0.00 4.81
2984 4601 6.851222 ATTTCTAACATTGGTATCAGAGCG 57.149 37.500 0.00 0.00 0.00 5.03
3002 4619 2.234414 AGCGGATTAGGGTTAACGACAA 59.766 45.455 0.00 0.00 0.00 3.18
3039 4657 5.229921 GATTCGATCGGAAAACAATTCCA 57.770 39.130 16.41 0.00 38.36 3.53
3054 4672 0.679505 TTCCACTGCGTACTCTGCTT 59.320 50.000 0.00 0.00 0.00 3.91
3068 4686 3.243907 ACTCTGCTTGTGGTCAACTAGTC 60.244 47.826 0.00 0.00 34.50 2.59
3069 4687 2.061773 CTGCTTGTGGTCAACTAGTCG 58.938 52.381 0.00 0.00 34.50 4.18
3070 4688 0.790814 GCTTGTGGTCAACTAGTCGC 59.209 55.000 0.00 0.00 34.50 5.19
3071 4689 1.605712 GCTTGTGGTCAACTAGTCGCT 60.606 52.381 0.00 0.00 34.50 4.93
3072 4690 2.329379 CTTGTGGTCAACTAGTCGCTC 58.671 52.381 0.00 0.00 0.00 5.03
3104 4723 6.018425 CCAACTTGGATTAGATTGATCTCGTG 60.018 42.308 0.92 0.00 40.96 4.35
3106 4725 6.045318 ACTTGGATTAGATTGATCTCGTGTG 58.955 40.000 0.00 0.00 38.32 3.82
3145 4773 3.085443 TCGCTCCAGATCGATTTTCTC 57.915 47.619 0.00 0.00 0.00 2.87
3154 4782 3.330766 CGATTTTCTCGTCTCGCCT 57.669 52.632 0.00 0.00 42.56 5.52
3169 4800 4.493747 CCTCGCCGTTCCCGTCTC 62.494 72.222 0.00 0.00 0.00 3.36
3195 4826 4.664677 GCACTGTCGTCCTGCCGT 62.665 66.667 0.00 0.00 0.00 5.68
3196 4827 2.734723 CACTGTCGTCCTGCCGTG 60.735 66.667 0.00 0.00 0.00 4.94
3197 4828 4.664677 ACTGTCGTCCTGCCGTGC 62.665 66.667 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.134037 GTGGTGGTTTGGTACAGGACA 60.134 52.381 0.00 0.00 42.39 4.02
85 115 0.246910 GGAGGGACGAGGTTTCTCAC 59.753 60.000 0.00 0.00 39.95 3.51
86 116 0.903454 GGGAGGGACGAGGTTTCTCA 60.903 60.000 0.00 0.00 39.95 3.27
127 157 3.489513 GGGGAATGGACCGAGGGG 61.490 72.222 0.00 0.00 40.11 4.79
128 158 1.571773 AAAGGGGAATGGACCGAGGG 61.572 60.000 0.00 0.00 0.00 4.30
129 159 0.331616 AAAAGGGGAATGGACCGAGG 59.668 55.000 0.00 0.00 0.00 4.63
144 174 1.271379 GTTTCCCCGCCACCTAAAAAG 59.729 52.381 0.00 0.00 0.00 2.27
150 180 3.647771 GAGGTTTCCCCGCCACCT 61.648 66.667 0.00 0.00 44.05 4.00
161 191 4.436998 CGGAGGCGCTCGAGGTTT 62.437 66.667 15.58 0.00 0.00 3.27
226 258 1.127582 CGAAGCAGTGCAGTTTAGCTC 59.872 52.381 19.20 0.00 33.83 4.09
235 267 1.089112 CATCAATCCGAAGCAGTGCA 58.911 50.000 19.20 0.00 0.00 4.57
236 268 1.089920 ACATCAATCCGAAGCAGTGC 58.910 50.000 7.13 7.13 0.00 4.40
270 302 0.922243 ATACCCCCAACGAACCCCAT 60.922 55.000 0.00 0.00 0.00 4.00
272 304 1.077285 CATACCCCCAACGAACCCC 60.077 63.158 0.00 0.00 0.00 4.95
274 306 1.476291 GGATCATACCCCCAACGAACC 60.476 57.143 0.00 0.00 0.00 3.62
279 311 2.635915 TGTATCGGATCATACCCCCAAC 59.364 50.000 0.00 0.00 0.00 3.77
281 313 2.158219 ACTGTATCGGATCATACCCCCA 60.158 50.000 0.00 0.00 0.00 4.96
296 328 5.470098 AGCAATCAACGAAAACTGACTGTAT 59.530 36.000 0.00 0.00 0.00 2.29
299 331 4.024556 AGAGCAATCAACGAAAACTGACTG 60.025 41.667 0.00 0.00 0.00 3.51
300 332 4.130118 AGAGCAATCAACGAAAACTGACT 58.870 39.130 0.00 0.00 0.00 3.41
301 333 4.474226 AGAGCAATCAACGAAAACTGAC 57.526 40.909 0.00 0.00 0.00 3.51
303 335 4.149922 TCGTAGAGCAATCAACGAAAACTG 59.850 41.667 0.00 0.00 41.01 3.16
305 337 4.640805 TCGTAGAGCAATCAACGAAAAC 57.359 40.909 0.00 0.00 41.01 2.43
341 373 4.762765 TCTAGGGCACGCAATTAAGAAAAA 59.237 37.500 0.00 0.00 0.00 1.94
342 374 4.328536 TCTAGGGCACGCAATTAAGAAAA 58.671 39.130 0.00 0.00 0.00 2.29
343 375 3.945346 TCTAGGGCACGCAATTAAGAAA 58.055 40.909 0.00 0.00 0.00 2.52
344 376 3.620427 TCTAGGGCACGCAATTAAGAA 57.380 42.857 0.00 0.00 0.00 2.52
345 377 3.620427 TTCTAGGGCACGCAATTAAGA 57.380 42.857 0.00 0.00 0.00 2.10
346 378 4.156008 ACTTTTCTAGGGCACGCAATTAAG 59.844 41.667 0.00 0.00 0.00 1.85
347 379 4.076394 ACTTTTCTAGGGCACGCAATTAA 58.924 39.130 0.00 0.00 0.00 1.40
348 380 3.681593 ACTTTTCTAGGGCACGCAATTA 58.318 40.909 0.00 0.00 0.00 1.40
349 381 2.514803 ACTTTTCTAGGGCACGCAATT 58.485 42.857 0.00 0.00 0.00 2.32
350 382 2.200373 ACTTTTCTAGGGCACGCAAT 57.800 45.000 0.00 0.00 0.00 3.56
351 383 1.975660 AACTTTTCTAGGGCACGCAA 58.024 45.000 0.00 0.00 0.00 4.85
352 384 1.975660 AAACTTTTCTAGGGCACGCA 58.024 45.000 0.00 0.00 0.00 5.24
353 385 2.809696 TGTAAACTTTTCTAGGGCACGC 59.190 45.455 0.00 0.00 0.00 5.34
354 386 3.435671 CCTGTAAACTTTTCTAGGGCACG 59.564 47.826 0.00 0.00 0.00 5.34
355 387 4.395625 ACCTGTAAACTTTTCTAGGGCAC 58.604 43.478 0.00 0.00 31.43 5.01
356 388 4.717279 ACCTGTAAACTTTTCTAGGGCA 57.283 40.909 0.00 0.00 31.43 5.36
357 389 5.334646 CGAAACCTGTAAACTTTTCTAGGGC 60.335 44.000 0.00 0.00 31.43 5.19
358 390 5.993441 TCGAAACCTGTAAACTTTTCTAGGG 59.007 40.000 0.00 0.00 31.43 3.53
359 391 7.668525 ATCGAAACCTGTAAACTTTTCTAGG 57.331 36.000 0.00 0.00 32.66 3.02
360 392 8.770828 TGAATCGAAACCTGTAAACTTTTCTAG 58.229 33.333 0.00 0.00 0.00 2.43
361 393 8.665643 TGAATCGAAACCTGTAAACTTTTCTA 57.334 30.769 0.00 0.00 0.00 2.10
362 394 7.497909 TCTGAATCGAAACCTGTAAACTTTTCT 59.502 33.333 0.00 0.00 0.00 2.52
363 395 7.636326 TCTGAATCGAAACCTGTAAACTTTTC 58.364 34.615 0.00 0.00 0.00 2.29
364 396 7.562454 TCTGAATCGAAACCTGTAAACTTTT 57.438 32.000 0.00 0.00 0.00 2.27
365 397 7.745620 ATCTGAATCGAAACCTGTAAACTTT 57.254 32.000 0.00 0.00 0.00 2.66
366 398 7.745620 AATCTGAATCGAAACCTGTAAACTT 57.254 32.000 0.00 0.00 0.00 2.66
367 399 8.842358 TTAATCTGAATCGAAACCTGTAAACT 57.158 30.769 0.00 0.00 0.00 2.66
368 400 9.887406 TTTTAATCTGAATCGAAACCTGTAAAC 57.113 29.630 0.00 0.00 0.00 2.01
370 402 8.726988 CCTTTTAATCTGAATCGAAACCTGTAA 58.273 33.333 0.00 0.00 0.00 2.41
371 403 7.881232 ACCTTTTAATCTGAATCGAAACCTGTA 59.119 33.333 0.00 0.00 0.00 2.74
372 404 6.715264 ACCTTTTAATCTGAATCGAAACCTGT 59.285 34.615 0.00 0.00 0.00 4.00
373 405 7.023575 CACCTTTTAATCTGAATCGAAACCTG 58.976 38.462 0.00 0.00 0.00 4.00
374 406 6.151144 CCACCTTTTAATCTGAATCGAAACCT 59.849 38.462 0.00 0.00 0.00 3.50
375 407 6.072119 ACCACCTTTTAATCTGAATCGAAACC 60.072 38.462 0.00 0.00 0.00 3.27
376 408 6.801862 CACCACCTTTTAATCTGAATCGAAAC 59.198 38.462 0.00 0.00 0.00 2.78
377 409 6.712998 TCACCACCTTTTAATCTGAATCGAAA 59.287 34.615 0.00 0.00 0.00 3.46
378 410 6.234920 TCACCACCTTTTAATCTGAATCGAA 58.765 36.000 0.00 0.00 0.00 3.71
379 411 5.800296 TCACCACCTTTTAATCTGAATCGA 58.200 37.500 0.00 0.00 0.00 3.59
380 412 6.683974 ATCACCACCTTTTAATCTGAATCG 57.316 37.500 0.00 0.00 0.00 3.34
381 413 9.178758 AGTAATCACCACCTTTTAATCTGAATC 57.821 33.333 0.00 0.00 0.00 2.52
383 415 9.667107 CTAGTAATCACCACCTTTTAATCTGAA 57.333 33.333 0.00 0.00 0.00 3.02
384 416 9.042450 TCTAGTAATCACCACCTTTTAATCTGA 57.958 33.333 0.00 0.00 0.00 3.27
385 417 9.667107 TTCTAGTAATCACCACCTTTTAATCTG 57.333 33.333 0.00 0.00 0.00 2.90
386 418 9.892130 CTTCTAGTAATCACCACCTTTTAATCT 57.108 33.333 0.00 0.00 0.00 2.40
387 419 9.110502 CCTTCTAGTAATCACCACCTTTTAATC 57.889 37.037 0.00 0.00 0.00 1.75
388 420 8.612145 ACCTTCTAGTAATCACCACCTTTTAAT 58.388 33.333 0.00 0.00 0.00 1.40
389 421 7.981142 ACCTTCTAGTAATCACCACCTTTTAA 58.019 34.615 0.00 0.00 0.00 1.52
390 422 7.563724 ACCTTCTAGTAATCACCACCTTTTA 57.436 36.000 0.00 0.00 0.00 1.52
391 423 6.449830 ACCTTCTAGTAATCACCACCTTTT 57.550 37.500 0.00 0.00 0.00 2.27
392 424 6.070366 GGTACCTTCTAGTAATCACCACCTTT 60.070 42.308 4.06 0.00 0.00 3.11
393 425 5.424573 GGTACCTTCTAGTAATCACCACCTT 59.575 44.000 4.06 0.00 0.00 3.50
394 426 4.961099 GGTACCTTCTAGTAATCACCACCT 59.039 45.833 4.06 0.00 0.00 4.00
395 427 5.273674 GGTACCTTCTAGTAATCACCACC 57.726 47.826 4.06 0.00 0.00 4.61
448 480 9.516314 CGTATGAGTAGATTGATTTGTAGACAA 57.484 33.333 0.00 0.00 0.00 3.18
449 481 8.683615 ACGTATGAGTAGATTGATTTGTAGACA 58.316 33.333 0.00 0.00 0.00 3.41
450 482 9.517609 AACGTATGAGTAGATTGATTTGTAGAC 57.482 33.333 0.00 0.00 0.00 2.59
453 485 8.600625 GCAAACGTATGAGTAGATTGATTTGTA 58.399 33.333 0.00 0.00 0.00 2.41
454 486 7.119116 TGCAAACGTATGAGTAGATTGATTTGT 59.881 33.333 0.00 0.00 0.00 2.83
455 487 7.463544 TGCAAACGTATGAGTAGATTGATTTG 58.536 34.615 0.00 0.00 0.00 2.32
456 488 7.201644 CCTGCAAACGTATGAGTAGATTGATTT 60.202 37.037 0.00 0.00 0.00 2.17
457 489 6.258727 CCTGCAAACGTATGAGTAGATTGATT 59.741 38.462 0.00 0.00 0.00 2.57
458 490 5.755375 CCTGCAAACGTATGAGTAGATTGAT 59.245 40.000 0.00 0.00 0.00 2.57
459 491 5.109210 CCTGCAAACGTATGAGTAGATTGA 58.891 41.667 0.00 0.00 0.00 2.57
460 492 4.260375 GCCTGCAAACGTATGAGTAGATTG 60.260 45.833 0.00 0.00 0.00 2.67
461 493 3.871594 GCCTGCAAACGTATGAGTAGATT 59.128 43.478 0.00 0.00 0.00 2.40
462 494 3.133003 AGCCTGCAAACGTATGAGTAGAT 59.867 43.478 0.00 0.00 0.00 1.98
463 495 2.496070 AGCCTGCAAACGTATGAGTAGA 59.504 45.455 0.00 0.00 0.00 2.59
464 496 2.893637 AGCCTGCAAACGTATGAGTAG 58.106 47.619 0.00 0.00 0.00 2.57
465 497 4.459390 TTAGCCTGCAAACGTATGAGTA 57.541 40.909 0.00 0.00 0.00 2.59
466 498 3.328382 TTAGCCTGCAAACGTATGAGT 57.672 42.857 0.00 0.00 0.00 3.41
467 499 5.696270 TCATATTAGCCTGCAAACGTATGAG 59.304 40.000 0.00 0.00 0.00 2.90
468 500 5.465390 GTCATATTAGCCTGCAAACGTATGA 59.535 40.000 0.00 0.00 0.00 2.15
469 501 5.612492 CGTCATATTAGCCTGCAAACGTATG 60.612 44.000 0.00 0.00 0.00 2.39
470 502 4.447724 CGTCATATTAGCCTGCAAACGTAT 59.552 41.667 0.00 0.00 0.00 3.06
471 503 3.799963 CGTCATATTAGCCTGCAAACGTA 59.200 43.478 0.00 0.00 0.00 3.57
472 504 2.607635 CGTCATATTAGCCTGCAAACGT 59.392 45.455 0.00 0.00 0.00 3.99
473 505 2.863740 TCGTCATATTAGCCTGCAAACG 59.136 45.455 0.00 0.00 0.00 3.60
474 506 6.363473 GTTATCGTCATATTAGCCTGCAAAC 58.637 40.000 0.00 0.00 0.00 2.93
475 507 5.468746 GGTTATCGTCATATTAGCCTGCAAA 59.531 40.000 0.00 0.00 0.00 3.68
476 508 4.994852 GGTTATCGTCATATTAGCCTGCAA 59.005 41.667 0.00 0.00 0.00 4.08
477 509 4.283467 AGGTTATCGTCATATTAGCCTGCA 59.717 41.667 0.00 0.00 0.00 4.41
478 510 4.822026 AGGTTATCGTCATATTAGCCTGC 58.178 43.478 0.00 0.00 0.00 4.85
479 511 7.730364 AAAAGGTTATCGTCATATTAGCCTG 57.270 36.000 0.00 0.00 0.00 4.85
480 512 9.841295 TTTAAAAGGTTATCGTCATATTAGCCT 57.159 29.630 0.00 0.00 0.00 4.58
515 547 9.657419 CCCTTTAAAAGTTTGCATGAATCTTAT 57.343 29.630 0.00 0.00 0.00 1.73
516 548 8.093927 CCCCTTTAAAAGTTTGCATGAATCTTA 58.906 33.333 0.00 0.00 0.00 2.10
517 549 6.936335 CCCCTTTAAAAGTTTGCATGAATCTT 59.064 34.615 0.00 0.00 0.00 2.40
518 550 6.043127 ACCCCTTTAAAAGTTTGCATGAATCT 59.957 34.615 0.00 0.00 0.00 2.40
519 551 6.230472 ACCCCTTTAAAAGTTTGCATGAATC 58.770 36.000 0.00 0.00 0.00 2.52
520 552 6.186420 ACCCCTTTAAAAGTTTGCATGAAT 57.814 33.333 0.00 0.00 0.00 2.57
521 553 5.622346 ACCCCTTTAAAAGTTTGCATGAA 57.378 34.783 0.00 0.00 0.00 2.57
522 554 5.104735 ACAACCCCTTTAAAAGTTTGCATGA 60.105 36.000 0.00 0.00 0.00 3.07
523 555 5.122519 ACAACCCCTTTAAAAGTTTGCATG 58.877 37.500 0.00 0.00 0.00 4.06
524 556 5.366482 ACAACCCCTTTAAAAGTTTGCAT 57.634 34.783 0.00 0.00 0.00 3.96
525 557 4.828072 ACAACCCCTTTAAAAGTTTGCA 57.172 36.364 0.00 0.00 0.00 4.08
526 558 5.051816 GGTACAACCCCTTTAAAAGTTTGC 58.948 41.667 0.00 0.00 30.04 3.68
527 559 6.223351 TGGTACAACCCCTTTAAAAGTTTG 57.777 37.500 0.00 0.00 37.50 2.93
544 576 0.248134 GTGTTTTGCGCGTTGGTACA 60.248 50.000 8.43 3.48 0.00 2.90
545 577 0.028374 AGTGTTTTGCGCGTTGGTAC 59.972 50.000 8.43 0.48 0.00 3.34
546 578 0.733729 AAGTGTTTTGCGCGTTGGTA 59.266 45.000 8.43 0.00 0.00 3.25
547 579 0.800300 CAAGTGTTTTGCGCGTTGGT 60.800 50.000 8.43 0.00 0.00 3.67
548 580 1.916505 CAAGTGTTTTGCGCGTTGG 59.083 52.632 8.43 0.00 0.00 3.77
549 581 1.269522 GCAAGTGTTTTGCGCGTTG 59.730 52.632 8.43 2.36 35.58 4.10
550 582 3.686863 GCAAGTGTTTTGCGCGTT 58.313 50.000 8.43 0.00 35.58 4.84
590 622 6.656270 AGTCAATTTCAAGCACACATGAGATA 59.344 34.615 0.00 0.00 0.00 1.98
591 623 5.475909 AGTCAATTTCAAGCACACATGAGAT 59.524 36.000 0.00 0.00 0.00 2.75
599 634 2.730069 CGCAAGTCAATTTCAAGCACA 58.270 42.857 0.00 0.00 0.00 4.57
622 657 6.238211 GCTCATCAACAATCGCTACAAGTATT 60.238 38.462 0.00 0.00 0.00 1.89
623 658 5.235186 GCTCATCAACAATCGCTACAAGTAT 59.765 40.000 0.00 0.00 0.00 2.12
624 659 4.566759 GCTCATCAACAATCGCTACAAGTA 59.433 41.667 0.00 0.00 0.00 2.24
625 660 3.372206 GCTCATCAACAATCGCTACAAGT 59.628 43.478 0.00 0.00 0.00 3.16
626 661 3.620374 AGCTCATCAACAATCGCTACAAG 59.380 43.478 0.00 0.00 0.00 3.16
627 662 3.599343 AGCTCATCAACAATCGCTACAA 58.401 40.909 0.00 0.00 0.00 2.41
628 663 3.251479 AGCTCATCAACAATCGCTACA 57.749 42.857 0.00 0.00 0.00 2.74
629 664 5.043903 TCTTAGCTCATCAACAATCGCTAC 58.956 41.667 0.00 0.00 30.56 3.58
630 665 5.262588 TCTTAGCTCATCAACAATCGCTA 57.737 39.130 0.00 0.00 0.00 4.26
631 666 4.128925 TCTTAGCTCATCAACAATCGCT 57.871 40.909 0.00 0.00 0.00 4.93
632 667 4.272018 ACATCTTAGCTCATCAACAATCGC 59.728 41.667 0.00 0.00 0.00 4.58
633 668 5.521372 TCACATCTTAGCTCATCAACAATCG 59.479 40.000 0.00 0.00 0.00 3.34
634 669 6.915544 TCACATCTTAGCTCATCAACAATC 57.084 37.500 0.00 0.00 0.00 2.67
635 670 6.183360 GCTTCACATCTTAGCTCATCAACAAT 60.183 38.462 0.00 0.00 32.26 2.71
636 671 5.122869 GCTTCACATCTTAGCTCATCAACAA 59.877 40.000 0.00 0.00 32.26 2.83
637 672 4.633126 GCTTCACATCTTAGCTCATCAACA 59.367 41.667 0.00 0.00 32.26 3.33
638 673 4.034975 GGCTTCACATCTTAGCTCATCAAC 59.965 45.833 0.00 0.00 35.30 3.18
639 674 4.194640 GGCTTCACATCTTAGCTCATCAA 58.805 43.478 0.00 0.00 35.30 2.57
640 675 3.198417 TGGCTTCACATCTTAGCTCATCA 59.802 43.478 0.00 0.00 35.30 3.07
641 676 3.801698 TGGCTTCACATCTTAGCTCATC 58.198 45.455 0.00 0.00 35.30 2.92
642 677 3.920231 TGGCTTCACATCTTAGCTCAT 57.080 42.857 0.00 0.00 35.30 2.90
643 678 3.701205 TTGGCTTCACATCTTAGCTCA 57.299 42.857 0.00 0.00 35.30 4.26
644 679 6.874288 ATATTTGGCTTCACATCTTAGCTC 57.126 37.500 0.00 0.00 35.30 4.09
645 680 7.995488 ACTTATATTTGGCTTCACATCTTAGCT 59.005 33.333 0.00 0.00 35.30 3.32
646 681 8.159344 ACTTATATTTGGCTTCACATCTTAGC 57.841 34.615 0.00 0.00 0.00 3.09
650 685 9.988815 CTAGTACTTATATTTGGCTTCACATCT 57.011 33.333 0.00 0.00 0.00 2.90
651 686 9.209175 CCTAGTACTTATATTTGGCTTCACATC 57.791 37.037 0.00 0.00 0.00 3.06
652 687 8.714906 ACCTAGTACTTATATTTGGCTTCACAT 58.285 33.333 0.00 0.00 0.00 3.21
653 688 8.086143 ACCTAGTACTTATATTTGGCTTCACA 57.914 34.615 0.00 0.00 0.00 3.58
674 709 9.939802 GGTTTCACTCTTTAGAAAAGATACCTA 57.060 33.333 2.76 0.00 35.71 3.08
675 710 7.883833 GGGTTTCACTCTTTAGAAAAGATACCT 59.116 37.037 2.76 0.00 35.71 3.08
676 711 7.120873 GGGGTTTCACTCTTTAGAAAAGATACC 59.879 40.741 2.76 6.11 35.71 2.73
677 712 7.148457 CGGGGTTTCACTCTTTAGAAAAGATAC 60.148 40.741 2.76 0.00 35.71 2.24
678 713 6.877322 CGGGGTTTCACTCTTTAGAAAAGATA 59.123 38.462 2.76 0.00 35.71 1.98
679 714 5.705905 CGGGGTTTCACTCTTTAGAAAAGAT 59.294 40.000 2.76 0.00 35.71 2.40
680 715 5.061179 CGGGGTTTCACTCTTTAGAAAAGA 58.939 41.667 2.39 2.39 35.71 2.52
681 716 4.320275 GCGGGGTTTCACTCTTTAGAAAAG 60.320 45.833 0.00 0.00 35.71 2.27
682 717 3.566742 GCGGGGTTTCACTCTTTAGAAAA 59.433 43.478 0.00 0.00 35.71 2.29
683 718 3.143728 GCGGGGTTTCACTCTTTAGAAA 58.856 45.455 0.00 0.00 0.00 2.52
684 719 2.370849 AGCGGGGTTTCACTCTTTAGAA 59.629 45.455 0.00 0.00 0.00 2.10
685 720 1.975680 AGCGGGGTTTCACTCTTTAGA 59.024 47.619 0.00 0.00 0.00 2.10
686 721 2.474410 AGCGGGGTTTCACTCTTTAG 57.526 50.000 0.00 0.00 0.00 1.85
687 722 2.882137 CAAAGCGGGGTTTCACTCTTTA 59.118 45.455 0.00 0.00 0.00 1.85
688 723 1.681264 CAAAGCGGGGTTTCACTCTTT 59.319 47.619 0.00 0.00 0.00 2.52
689 724 1.318576 CAAAGCGGGGTTTCACTCTT 58.681 50.000 0.00 0.00 0.00 2.85
690 725 0.537371 CCAAAGCGGGGTTTCACTCT 60.537 55.000 0.00 0.00 0.00 3.24
691 726 0.536460 TCCAAAGCGGGGTTTCACTC 60.536 55.000 0.00 0.00 34.36 3.51
692 727 0.112412 ATCCAAAGCGGGGTTTCACT 59.888 50.000 0.00 0.00 34.36 3.41
693 728 1.828979 TATCCAAAGCGGGGTTTCAC 58.171 50.000 0.00 0.00 34.36 3.18
694 729 2.588464 TTATCCAAAGCGGGGTTTCA 57.412 45.000 0.00 0.00 34.36 2.69
695 730 4.465632 AAATTATCCAAAGCGGGGTTTC 57.534 40.909 0.00 0.00 34.36 2.78
696 731 4.901197 AAAATTATCCAAAGCGGGGTTT 57.099 36.364 0.00 0.00 34.36 3.27
697 732 5.020795 ACTAAAATTATCCAAAGCGGGGTT 58.979 37.500 0.00 0.00 34.36 4.11
698 733 4.606210 ACTAAAATTATCCAAAGCGGGGT 58.394 39.130 0.00 0.00 34.36 4.95
699 734 4.261031 CGACTAAAATTATCCAAAGCGGGG 60.261 45.833 0.00 0.00 34.36 5.73
700 735 4.573201 TCGACTAAAATTATCCAAAGCGGG 59.427 41.667 0.00 0.00 34.36 6.13
701 736 5.728351 TCGACTAAAATTATCCAAAGCGG 57.272 39.130 0.00 0.00 0.00 5.52
702 737 5.198274 GCTCGACTAAAATTATCCAAAGCG 58.802 41.667 0.00 0.00 0.00 4.68
703 738 5.065988 TGGCTCGACTAAAATTATCCAAAGC 59.934 40.000 0.00 0.00 0.00 3.51
704 739 6.677781 TGGCTCGACTAAAATTATCCAAAG 57.322 37.500 0.00 0.00 0.00 2.77
705 740 6.039270 CCATGGCTCGACTAAAATTATCCAAA 59.961 38.462 0.00 0.00 0.00 3.28
706 741 5.530915 CCATGGCTCGACTAAAATTATCCAA 59.469 40.000 0.00 0.00 0.00 3.53
707 742 5.063204 CCATGGCTCGACTAAAATTATCCA 58.937 41.667 0.00 0.00 0.00 3.41
708 743 5.305585 TCCATGGCTCGACTAAAATTATCC 58.694 41.667 6.96 0.00 0.00 2.59
709 744 6.092807 GGATCCATGGCTCGACTAAAATTATC 59.907 42.308 6.96 0.00 0.00 1.75
710 745 5.940470 GGATCCATGGCTCGACTAAAATTAT 59.060 40.000 6.96 0.00 0.00 1.28
711 746 5.163248 TGGATCCATGGCTCGACTAAAATTA 60.163 40.000 11.44 0.00 0.00 1.40
712 747 4.137543 GGATCCATGGCTCGACTAAAATT 58.862 43.478 6.96 0.00 0.00 1.82
713 748 3.136443 TGGATCCATGGCTCGACTAAAAT 59.864 43.478 11.44 0.00 0.00 1.82
714 749 2.503765 TGGATCCATGGCTCGACTAAAA 59.496 45.455 11.44 0.00 0.00 1.52
743 785 1.151450 CCAAACTGCCACTCCTGGT 59.849 57.895 0.00 0.00 40.17 4.00
745 787 2.270986 GCCCAAACTGCCACTCCTG 61.271 63.158 0.00 0.00 0.00 3.86
746 788 2.116125 GCCCAAACTGCCACTCCT 59.884 61.111 0.00 0.00 0.00 3.69
747 789 2.203480 TGCCCAAACTGCCACTCC 60.203 61.111 0.00 0.00 0.00 3.85
748 790 1.228245 TCTGCCCAAACTGCCACTC 60.228 57.895 0.00 0.00 0.00 3.51
754 796 1.683011 CCATACCCTCTGCCCAAACTG 60.683 57.143 0.00 0.00 0.00 3.16
765 807 5.420409 CAAGACTAGTGTTTCCATACCCTC 58.580 45.833 0.00 0.00 0.00 4.30
782 824 1.417890 AGTGCAGTTACCAGCAAGACT 59.582 47.619 1.76 0.00 43.20 3.24
785 827 2.221169 TCAAGTGCAGTTACCAGCAAG 58.779 47.619 6.43 0.00 43.20 4.01
788 830 1.884235 ACTCAAGTGCAGTTACCAGC 58.116 50.000 6.43 0.00 0.00 4.85
789 831 3.548818 GCAAACTCAAGTGCAGTTACCAG 60.549 47.826 6.43 6.04 40.58 4.00
790 832 2.357637 GCAAACTCAAGTGCAGTTACCA 59.642 45.455 6.43 0.00 40.58 3.25
792 834 2.357637 TGGCAAACTCAAGTGCAGTTAC 59.642 45.455 6.43 0.00 42.74 2.50
793 835 2.649190 TGGCAAACTCAAGTGCAGTTA 58.351 42.857 6.43 0.00 42.74 2.24
795 837 1.406539 CTTGGCAAACTCAAGTGCAGT 59.593 47.619 0.00 0.00 42.74 4.40
796 838 2.129823 CTTGGCAAACTCAAGTGCAG 57.870 50.000 0.00 0.00 42.74 4.41
819 861 7.848051 GCATTCTGTAGTTGAGATACGATTTTG 59.152 37.037 0.00 0.00 0.00 2.44
826 868 7.761704 TCTCTTTGCATTCTGTAGTTGAGATAC 59.238 37.037 0.00 0.00 0.00 2.24
849 894 1.384989 TTCCCGACGAGCATCCTCTC 61.385 60.000 0.00 0.00 35.90 3.20
851 896 0.105039 ATTTCCCGACGAGCATCCTC 59.895 55.000 0.00 0.00 34.66 3.71
862 907 0.535328 TGCAAACCGACATTTCCCGA 60.535 50.000 0.00 0.00 0.00 5.14
868 913 2.627699 AGAAACCATGCAAACCGACATT 59.372 40.909 0.00 0.00 0.00 2.71
876 921 5.426504 ACAAAATGACAGAAACCATGCAAA 58.573 33.333 0.00 0.00 0.00 3.68
889 934 6.124340 AGCCATATCTGATGACAAAATGACA 58.876 36.000 0.00 0.00 0.00 3.58
915 961 5.476091 AATTAGAGAATCGATGGGACTCC 57.524 43.478 0.00 0.00 42.67 3.85
916 962 6.583050 CGTTAATTAGAGAATCGATGGGACTC 59.417 42.308 0.00 6.39 42.67 3.36
920 966 6.183360 GCATCGTTAATTAGAGAATCGATGGG 60.183 42.308 20.36 3.30 42.19 4.00
945 991 2.223688 TGTTCAACAATCAACAAGGCGG 60.224 45.455 0.00 0.00 29.43 6.13
1006 1052 5.942826 AGAGGAAAGAGCAAACCTTAATGAG 59.057 40.000 0.00 0.00 32.53 2.90
1066 1114 7.147863 TGCCTCACAAATTACTCATTATGCATT 60.148 33.333 3.54 0.00 0.00 3.56
1075 1123 6.472016 TCAGTAATGCCTCACAAATTACTCA 58.528 36.000 4.70 0.00 42.43 3.41
1106 1162 2.351157 GCAGTGGTCAGAAATGCACTTC 60.351 50.000 0.00 0.00 36.88 3.01
1112 1168 2.224606 ACAGTGCAGTGGTCAGAAATG 58.775 47.619 24.91 0.00 0.00 2.32
1131 1187 9.823098 CTCTGCTTCATAATAAATCAGCATTAC 57.177 33.333 0.00 0.00 36.70 1.89
1138 1194 6.000219 GGAGGCTCTGCTTCATAATAAATCA 59.000 40.000 15.23 0.00 36.34 2.57
1273 1333 2.443016 TTTTTGCGGGGGCACAGT 60.443 55.556 0.00 0.00 0.00 3.55
1331 1391 9.693739 CATCTTACTACATATCCTGATAGTCCT 57.306 37.037 0.00 0.00 0.00 3.85
1334 1394 9.168451 CGTCATCTTACTACATATCCTGATAGT 57.832 37.037 0.00 0.00 0.00 2.12
1335 1395 8.616942 CCGTCATCTTACTACATATCCTGATAG 58.383 40.741 0.00 0.00 0.00 2.08
1336 1396 8.107729 ACCGTCATCTTACTACATATCCTGATA 58.892 37.037 0.00 0.00 0.00 2.15
1337 1397 6.948886 ACCGTCATCTTACTACATATCCTGAT 59.051 38.462 0.00 0.00 0.00 2.90
1338 1398 6.304624 ACCGTCATCTTACTACATATCCTGA 58.695 40.000 0.00 0.00 0.00 3.86
1509 3101 5.314923 TCATTTGGCTGAGCTAAATTCAC 57.685 39.130 23.48 0.00 44.91 3.18
1517 3109 3.641434 ACACTATCATTTGGCTGAGCT 57.359 42.857 3.72 0.00 0.00 4.09
1537 3129 6.544197 TGCAACAATGTTTAAGAAGGACACTA 59.456 34.615 0.00 0.00 0.00 2.74
1588 3185 6.039047 GGCATCATAGGCATAATATCCAACTG 59.961 42.308 0.00 0.00 0.00 3.16
1596 3193 6.153170 CCATGTTTGGCATCATAGGCATAATA 59.847 38.462 5.59 0.00 44.02 0.98
1599 3196 3.827876 CCATGTTTGGCATCATAGGCATA 59.172 43.478 5.59 0.00 44.02 3.14
1601 3198 2.033372 CCATGTTTGGCATCATAGGCA 58.967 47.619 5.59 0.00 42.83 4.75
1603 3200 2.669781 ACCCATGTTTGGCATCATAGG 58.330 47.619 13.00 13.00 42.15 2.57
1609 3206 4.095946 AGAACAATACCCATGTTTGGCAT 58.904 39.130 0.00 0.00 40.90 4.40
1610 3207 3.505386 AGAACAATACCCATGTTTGGCA 58.495 40.909 0.00 0.00 40.90 4.92
1611 3208 5.852282 ATAGAACAATACCCATGTTTGGC 57.148 39.130 0.00 0.00 40.90 4.52
1612 3209 9.748708 CATTAATAGAACAATACCCATGTTTGG 57.251 33.333 0.00 0.00 40.90 3.28
1615 3212 8.850156 GCTCATTAATAGAACAATACCCATGTT 58.150 33.333 0.00 0.00 43.37 2.71
1616 3213 7.448469 GGCTCATTAATAGAACAATACCCATGT 59.552 37.037 0.00 0.00 0.00 3.21
1619 3216 5.995282 CGGCTCATTAATAGAACAATACCCA 59.005 40.000 0.00 0.00 0.00 4.51
1620 3217 5.995897 ACGGCTCATTAATAGAACAATACCC 59.004 40.000 0.00 0.00 0.00 3.69
1621 3218 6.704493 TCACGGCTCATTAATAGAACAATACC 59.296 38.462 0.00 0.00 0.00 2.73
1623 3220 8.367911 AGATCACGGCTCATTAATAGAACAATA 58.632 33.333 0.00 0.00 0.00 1.90
1624 3221 7.220030 AGATCACGGCTCATTAATAGAACAAT 58.780 34.615 0.00 0.00 0.00 2.71
1625 3222 6.582636 AGATCACGGCTCATTAATAGAACAA 58.417 36.000 0.00 0.00 0.00 2.83
1626 3223 6.040955 AGAGATCACGGCTCATTAATAGAACA 59.959 38.462 0.00 0.00 34.85 3.18
1627 3224 6.451393 AGAGATCACGGCTCATTAATAGAAC 58.549 40.000 0.00 0.00 34.85 3.01
1628 3225 6.656632 AGAGATCACGGCTCATTAATAGAA 57.343 37.500 0.00 0.00 34.85 2.10
1629 3226 6.265422 TCAAGAGATCACGGCTCATTAATAGA 59.735 38.462 0.00 0.00 34.85 1.98
1630 3227 6.364706 GTCAAGAGATCACGGCTCATTAATAG 59.635 42.308 0.00 0.00 34.85 1.73
1740 3341 2.537560 CGATGTCAATGGAGCGGCC 61.538 63.158 0.00 0.00 37.10 6.13
1784 3385 2.530460 TGTGGGCCAAAGCTTGATAT 57.470 45.000 8.40 0.00 39.73 1.63
1785 3386 2.101783 CATGTGGGCCAAAGCTTGATA 58.898 47.619 8.40 0.00 39.73 2.15
1963 3567 5.887214 TTCTCGGGGAATATTTGAGATCA 57.113 39.130 0.00 0.00 35.77 2.92
2009 3614 7.701924 ACATTTGTGTTTCAGTTGTATCAACTG 59.298 33.333 26.65 26.65 46.67 3.16
2054 3664 1.065345 GGGCAGTCTCCTAAACTTCCC 60.065 57.143 0.00 0.00 41.90 3.97
2055 3665 1.909986 AGGGCAGTCTCCTAAACTTCC 59.090 52.381 0.00 0.00 31.86 3.46
2210 3826 3.448934 ACCTCTTGAGGTGACATGATCT 58.551 45.455 20.27 0.00 41.33 2.75
2285 3901 5.743026 TCTTCACTGCGTTGATTTTGTAA 57.257 34.783 0.00 0.00 0.00 2.41
2359 3975 0.591488 CGCGCGTGATCAAGCTAGTA 60.591 55.000 27.21 0.00 33.62 1.82
2399 4015 9.462606 CCCAACAAGTTTTAGGAGAACTATAAT 57.537 33.333 0.00 0.00 36.38 1.28
2405 4021 6.650427 AATCCCAACAAGTTTTAGGAGAAC 57.350 37.500 0.00 0.00 0.00 3.01
2536 4152 6.398234 TTCCTTAAGCATGCAACAGTTAAA 57.602 33.333 21.98 1.47 0.00 1.52
2541 4157 3.578688 GGTTTCCTTAAGCATGCAACAG 58.421 45.455 21.98 11.52 34.37 3.16
2723 4339 3.575351 GAGTCCCTGAAGCACGCGT 62.575 63.158 5.58 5.58 0.00 6.01
2761 4377 8.698210 ACTACCAACCACGATATAATTTGTCTA 58.302 33.333 0.00 0.00 0.00 2.59
2793 4409 8.125978 TAAACTAGTTTTCGGATAGAGTCCAA 57.874 34.615 25.07 0.00 39.17 3.53
2886 4502 1.195115 GCATATCCGATGCTAGGGGA 58.805 55.000 2.29 0.00 41.52 4.81
2921 4538 4.154556 CCTATTTTTCCGTGCTTTTCCGTA 59.845 41.667 0.00 0.00 0.00 4.02
2937 4554 9.500701 AATATGTTGTGGTTTATCCCCTATTTT 57.499 29.630 0.00 0.00 34.77 1.82
2938 4555 9.500701 AAATATGTTGTGGTTTATCCCCTATTT 57.499 29.630 0.00 0.00 34.77 1.40
3054 4672 1.000607 GTGAGCGACTAGTTGACCACA 60.001 52.381 21.08 10.62 0.00 4.17
3119 4747 1.403814 TCGATCTGGAGCGATTCCTT 58.596 50.000 6.85 0.00 44.77 3.36
3141 4769 3.812019 GGCGAGGCGAGACGAGAA 61.812 66.667 0.00 0.00 0.00 2.87
3178 4809 4.664677 ACGGCAGGACGACAGTGC 62.665 66.667 0.00 0.00 39.15 4.40
3179 4810 2.734723 CACGGCAGGACGACAGTG 60.735 66.667 0.00 0.00 37.61 3.66
3180 4811 4.664677 GCACGGCAGGACGACAGT 62.665 66.667 0.00 0.00 37.61 3.55
3235 4866 4.827087 AGAGTGCGGCATGGCGAG 62.827 66.667 41.46 17.46 35.06 5.03
3236 4867 4.819761 GAGAGTGCGGCATGGCGA 62.820 66.667 41.46 24.67 35.06 5.54



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.