Multiple sequence alignment - TraesCS6A01G109600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G109600 chr6A 100.000 2341 0 0 1 2341 79022257 79024597 0.000000e+00 4324.0
1 TraesCS6A01G109600 chr6A 85.117 598 71 11 1728 2312 89897358 89897950 1.550000e-166 595.0
2 TraesCS6A01G109600 chr6B 95.209 814 35 2 745 1558 135503897 135504706 0.000000e+00 1284.0
3 TraesCS6A01G109600 chr6B 85.760 625 75 7 1725 2338 703206036 703206657 0.000000e+00 649.0
4 TraesCS6A01G109600 chr6B 84.843 607 77 6 1724 2318 691181744 691182347 4.310000e-167 597.0
5 TraesCS6A01G109600 chr6B 88.803 259 21 8 1315 1568 135578493 135578748 6.280000e-81 311.0
6 TraesCS6A01G109600 chr6B 94.972 179 7 1 1 179 70621131 70621307 1.770000e-71 279.0
7 TraesCS6A01G109600 chr6B 94.656 131 7 0 444 574 135503742 135503872 1.100000e-48 204.0
8 TraesCS6A01G109600 chr6B 100.000 38 0 0 697 734 135503870 135503907 1.160000e-08 71.3
9 TraesCS6A01G109600 chr6D 95.698 767 27 4 793 1558 61754706 61755467 0.000000e+00 1229.0
10 TraesCS6A01G109600 chr6D 92.424 132 9 1 444 574 61754378 61754509 1.100000e-43 187.0
11 TraesCS6A01G109600 chr6D 93.590 78 4 1 697 773 61754507 61754584 5.290000e-22 115.0
12 TraesCS6A01G109600 chr6D 92.982 57 3 1 745 800 61754534 61754590 5.360000e-12 82.4
13 TraesCS6A01G109600 chr3A 83.229 799 96 14 1554 2341 154027958 154028729 0.000000e+00 699.0
14 TraesCS6A01G109600 chr3A 82.222 180 17 2 1559 1737 42446735 42446570 8.720000e-30 141.0
15 TraesCS6A01G109600 chr5B 86.486 629 71 6 1724 2341 405707393 405706768 0.000000e+00 678.0
16 TraesCS6A01G109600 chr5B 94.475 181 8 1 1 181 279425689 279425867 6.370000e-71 278.0
17 TraesCS6A01G109600 chr2A 86.581 626 71 5 1724 2338 6131554 6132177 0.000000e+00 678.0
18 TraesCS6A01G109600 chr2A 86.422 626 72 5 1724 2338 6182600 6183223 0.000000e+00 673.0
19 TraesCS6A01G109600 chr2A 86.102 626 74 5 1724 2338 6078803 6079426 0.000000e+00 662.0
20 TraesCS6A01G109600 chr2A 85.851 629 73 4 1724 2341 708392480 708393103 0.000000e+00 654.0
21 TraesCS6A01G109600 chr2A 87.313 268 34 0 181 448 757677956 757678223 8.130000e-80 307.0
22 TraesCS6A01G109600 chr2A 95.506 178 6 2 1 178 168935450 168935625 1.370000e-72 283.0
23 TraesCS6A01G109600 chr2A 94.505 182 9 1 1 182 170727851 170728031 1.770000e-71 279.0
24 TraesCS6A01G109600 chr2A 95.455 176 7 1 2 177 316700467 316700641 1.770000e-71 279.0
25 TraesCS6A01G109600 chr2A 86.667 180 18 2 1559 1737 281239462 281239636 6.600000e-46 195.0
26 TraesCS6A01G109600 chr5A 86.349 630 72 8 1724 2341 572835410 572834783 0.000000e+00 675.0
27 TraesCS6A01G109600 chr5A 92.746 193 9 5 1 191 416424664 416424475 8.240000e-70 274.0
28 TraesCS6A01G109600 chr3B 86.256 633 70 6 1722 2341 10735780 10736408 0.000000e+00 671.0
29 TraesCS6A01G109600 chr3B 92.708 192 10 3 1 190 450575339 450575528 8.240000e-70 274.0
30 TraesCS6A01G109600 chr7D 86.218 624 70 6 1724 2341 68924689 68925302 0.000000e+00 662.0
31 TraesCS6A01G109600 chr7D 86.964 560 58 10 1724 2269 4739697 4740255 1.190000e-172 616.0
32 TraesCS6A01G109600 chr7D 87.218 266 30 3 177 441 104612679 104612417 1.360000e-77 300.0
33 TraesCS6A01G109600 chr7D 80.447 358 59 6 1726 2080 620487024 620487373 1.780000e-66 263.0
34 TraesCS6A01G109600 chr7D 86.747 83 8 3 1791 1871 611758975 611759056 3.200000e-14 89.8
35 TraesCS6A01G109600 chr4B 85.215 629 57 15 1724 2323 340555789 340556410 4.280000e-172 614.0
36 TraesCS6A01G109600 chr4B 79.282 362 57 13 1726 2080 101773763 101774113 1.080000e-58 237.0
37 TraesCS6A01G109600 chr7A 85.533 553 62 10 1724 2265 448377058 448376513 1.570000e-156 562.0
38 TraesCS6A01G109600 chr7A 82.521 595 73 12 1554 2147 530862453 530863017 5.810000e-136 494.0
39 TraesCS6A01G109600 chr7B 79.513 781 124 13 1557 2332 736569735 736570484 7.410000e-145 523.0
40 TraesCS6A01G109600 chr1A 81.043 633 76 13 1724 2341 585230389 585229786 4.560000e-127 464.0
41 TraesCS6A01G109600 chr1A 86.029 272 37 1 177 447 202084008 202083737 8.180000e-75 291.0
42 TraesCS6A01G109600 chr1A 80.992 363 51 15 1726 2079 104923146 104923499 2.960000e-69 272.0
43 TraesCS6A01G109600 chr1A 89.796 49 2 3 1818 1865 575203455 575203409 2.510000e-05 60.2
44 TraesCS6A01G109600 chr1B 78.240 625 116 14 1726 2341 466086027 466086640 1.310000e-102 383.0
45 TraesCS6A01G109600 chr1D 90.076 262 25 1 181 441 409991378 409991639 2.880000e-89 339.0
46 TraesCS6A01G109600 chr1D 88.302 265 31 0 177 441 70748886 70749150 3.750000e-83 318.0
47 TraesCS6A01G109600 chr1D 87.405 262 31 2 181 441 378876826 378877086 1.360000e-77 300.0
48 TraesCS6A01G109600 chr4D 87.313 268 33 1 181 447 280759661 280759394 2.920000e-79 305.0
49 TraesCS6A01G109600 chr3D 86.891 267 31 4 177 441 565683614 565683878 1.760000e-76 296.0
50 TraesCS6A01G109600 chr3D 86.973 261 34 0 181 441 294349312 294349572 6.330000e-76 294.0
51 TraesCS6A01G109600 chr3D 79.104 201 32 8 1828 2028 594185334 594185144 1.890000e-26 130.0
52 TraesCS6A01G109600 chr4A 95.000 180 7 1 1 180 202205440 202205617 4.930000e-72 281.0
53 TraesCS6A01G109600 chr4A 92.670 191 11 2 1 191 277626940 277626753 2.960000e-69 272.0
54 TraesCS6A01G109600 chr2D 81.159 345 54 8 1739 2080 626642073 626641737 1.380000e-67 267.0
55 TraesCS6A01G109600 chr2D 80.822 292 43 10 1726 2013 640429069 640429351 1.410000e-52 217.0
56 TraesCS6A01G109600 chr5D 87.363 182 19 2 1557 1737 546648135 546648313 3.050000e-49 206.0
57 TraesCS6A01G109600 chrUn 91.200 125 11 0 572 696 308231874 308231998 1.110000e-38 171.0
58 TraesCS6A01G109600 chrUn 91.200 125 11 0 572 696 359916602 359916478 1.110000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G109600 chr6A 79022257 79024597 2340 False 4324.000000 4324 100.000000 1 2341 1 chr6A.!!$F1 2340
1 TraesCS6A01G109600 chr6A 89897358 89897950 592 False 595.000000 595 85.117000 1728 2312 1 chr6A.!!$F2 584
2 TraesCS6A01G109600 chr6B 703206036 703206657 621 False 649.000000 649 85.760000 1725 2338 1 chr6B.!!$F4 613
3 TraesCS6A01G109600 chr6B 691181744 691182347 603 False 597.000000 597 84.843000 1724 2318 1 chr6B.!!$F3 594
4 TraesCS6A01G109600 chr6B 135503742 135504706 964 False 519.766667 1284 96.621667 444 1558 3 chr6B.!!$F5 1114
5 TraesCS6A01G109600 chr6D 61754378 61755467 1089 False 403.350000 1229 93.673500 444 1558 4 chr6D.!!$F1 1114
6 TraesCS6A01G109600 chr3A 154027958 154028729 771 False 699.000000 699 83.229000 1554 2341 1 chr3A.!!$F1 787
7 TraesCS6A01G109600 chr5B 405706768 405707393 625 True 678.000000 678 86.486000 1724 2341 1 chr5B.!!$R1 617
8 TraesCS6A01G109600 chr2A 6131554 6132177 623 False 678.000000 678 86.581000 1724 2338 1 chr2A.!!$F2 614
9 TraesCS6A01G109600 chr2A 6182600 6183223 623 False 673.000000 673 86.422000 1724 2338 1 chr2A.!!$F3 614
10 TraesCS6A01G109600 chr2A 6078803 6079426 623 False 662.000000 662 86.102000 1724 2338 1 chr2A.!!$F1 614
11 TraesCS6A01G109600 chr2A 708392480 708393103 623 False 654.000000 654 85.851000 1724 2341 1 chr2A.!!$F8 617
12 TraesCS6A01G109600 chr5A 572834783 572835410 627 True 675.000000 675 86.349000 1724 2341 1 chr5A.!!$R2 617
13 TraesCS6A01G109600 chr3B 10735780 10736408 628 False 671.000000 671 86.256000 1722 2341 1 chr3B.!!$F1 619
14 TraesCS6A01G109600 chr7D 68924689 68925302 613 False 662.000000 662 86.218000 1724 2341 1 chr7D.!!$F2 617
15 TraesCS6A01G109600 chr7D 4739697 4740255 558 False 616.000000 616 86.964000 1724 2269 1 chr7D.!!$F1 545
16 TraesCS6A01G109600 chr4B 340555789 340556410 621 False 614.000000 614 85.215000 1724 2323 1 chr4B.!!$F2 599
17 TraesCS6A01G109600 chr7A 448376513 448377058 545 True 562.000000 562 85.533000 1724 2265 1 chr7A.!!$R1 541
18 TraesCS6A01G109600 chr7A 530862453 530863017 564 False 494.000000 494 82.521000 1554 2147 1 chr7A.!!$F1 593
19 TraesCS6A01G109600 chr7B 736569735 736570484 749 False 523.000000 523 79.513000 1557 2332 1 chr7B.!!$F1 775
20 TraesCS6A01G109600 chr1A 585229786 585230389 603 True 464.000000 464 81.043000 1724 2341 1 chr1A.!!$R3 617
21 TraesCS6A01G109600 chr1B 466086027 466086640 613 False 383.000000 383 78.240000 1726 2341 1 chr1B.!!$F1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.035317 ATCAGACACAGCAAAGCCGA 59.965 50.0 0.0 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1692 0.830648 TCAGCCGGATGAAGGTTAGG 59.169 55.0 22.36 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.764679 TCATGTAATTGTGTGAAGTGGC 57.235 40.909 0.00 0.00 0.00 5.01
26 27 4.140536 TCATGTAATTGTGTGAAGTGGCA 58.859 39.130 0.00 0.00 0.00 4.92
27 28 4.582240 TCATGTAATTGTGTGAAGTGGCAA 59.418 37.500 0.00 0.00 0.00 4.52
28 29 5.243507 TCATGTAATTGTGTGAAGTGGCAAT 59.756 36.000 0.00 0.00 33.55 3.56
29 30 5.528043 TGTAATTGTGTGAAGTGGCAATT 57.472 34.783 0.00 0.00 42.14 2.32
30 31 5.288015 TGTAATTGTGTGAAGTGGCAATTG 58.712 37.500 4.31 0.00 40.42 2.32
31 32 4.405116 AATTGTGTGAAGTGGCAATTGT 57.595 36.364 4.31 0.00 39.26 2.71
32 33 5.528043 AATTGTGTGAAGTGGCAATTGTA 57.472 34.783 4.31 0.00 39.26 2.41
33 34 4.991153 TTGTGTGAAGTGGCAATTGTAA 57.009 36.364 4.31 0.00 0.00 2.41
34 35 4.566545 TGTGTGAAGTGGCAATTGTAAG 57.433 40.909 4.31 0.00 0.00 2.34
35 36 3.243367 TGTGTGAAGTGGCAATTGTAAGC 60.243 43.478 4.31 0.00 0.00 3.09
48 49 7.264373 GCAATTGTAAGCCAACTATGTATCT 57.736 36.000 7.40 0.00 35.44 1.98
49 50 7.355778 GCAATTGTAAGCCAACTATGTATCTC 58.644 38.462 7.40 0.00 35.44 2.75
50 51 7.227512 GCAATTGTAAGCCAACTATGTATCTCT 59.772 37.037 7.40 0.00 35.44 3.10
51 52 9.113838 CAATTGTAAGCCAACTATGTATCTCTT 57.886 33.333 0.00 0.00 35.44 2.85
52 53 9.686683 AATTGTAAGCCAACTATGTATCTCTTT 57.313 29.630 0.00 0.00 35.44 2.52
53 54 9.686683 ATTGTAAGCCAACTATGTATCTCTTTT 57.313 29.630 0.00 0.00 35.44 2.27
54 55 9.515226 TTGTAAGCCAACTATGTATCTCTTTTT 57.485 29.630 0.00 0.00 0.00 1.94
55 56 9.162764 TGTAAGCCAACTATGTATCTCTTTTTC 57.837 33.333 0.00 0.00 0.00 2.29
56 57 7.631717 AAGCCAACTATGTATCTCTTTTTCC 57.368 36.000 0.00 0.00 0.00 3.13
57 58 6.963322 AGCCAACTATGTATCTCTTTTTCCT 58.037 36.000 0.00 0.00 0.00 3.36
58 59 7.406104 AGCCAACTATGTATCTCTTTTTCCTT 58.594 34.615 0.00 0.00 0.00 3.36
59 60 7.890655 AGCCAACTATGTATCTCTTTTTCCTTT 59.109 33.333 0.00 0.00 0.00 3.11
60 61 9.174166 GCCAACTATGTATCTCTTTTTCCTTTA 57.826 33.333 0.00 0.00 0.00 1.85
79 80 9.693739 TTCCTTTATGTATTACATGGATTGTGT 57.306 29.630 17.68 0.00 39.53 3.72
80 81 9.119418 TCCTTTATGTATTACATGGATTGTGTG 57.881 33.333 17.68 0.10 39.53 3.82
81 82 9.119418 CCTTTATGTATTACATGGATTGTGTGA 57.881 33.333 17.68 0.00 39.53 3.58
84 85 9.898152 TTATGTATTACATGGATTGTGTGAAGA 57.102 29.630 17.68 0.00 39.53 2.87
85 86 8.985315 ATGTATTACATGGATTGTGTGAAGAT 57.015 30.769 8.51 0.00 37.45 2.40
86 87 8.437360 TGTATTACATGGATTGTGTGAAGATC 57.563 34.615 0.00 0.00 39.48 2.75
87 88 8.046107 TGTATTACATGGATTGTGTGAAGATCA 58.954 33.333 0.00 0.00 39.48 2.92
89 90 4.012374 ACATGGATTGTGTGAAGATCACC 58.988 43.478 7.94 1.05 46.40 4.02
90 91 4.263639 ACATGGATTGTGTGAAGATCACCT 60.264 41.667 7.94 0.00 46.40 4.00
91 92 4.371624 TGGATTGTGTGAAGATCACCTT 57.628 40.909 7.94 0.00 46.40 3.50
92 93 5.497464 TGGATTGTGTGAAGATCACCTTA 57.503 39.130 7.94 0.00 46.40 2.69
93 94 5.245531 TGGATTGTGTGAAGATCACCTTAC 58.754 41.667 7.94 1.12 46.40 2.34
94 95 5.013079 TGGATTGTGTGAAGATCACCTTACT 59.987 40.000 7.94 0.00 46.40 2.24
95 96 5.940470 GGATTGTGTGAAGATCACCTTACTT 59.060 40.000 7.94 0.00 46.40 2.24
96 97 6.128172 GGATTGTGTGAAGATCACCTTACTTG 60.128 42.308 7.94 0.00 46.40 3.16
97 98 4.065088 TGTGTGAAGATCACCTTACTTGC 58.935 43.478 7.94 0.00 46.40 4.01
98 99 3.123621 GTGTGAAGATCACCTTACTTGCG 59.876 47.826 7.94 0.00 46.40 4.85
99 100 3.006430 TGTGAAGATCACCTTACTTGCGA 59.994 43.478 7.94 0.00 46.40 5.10
100 101 3.368236 GTGAAGATCACCTTACTTGCGAC 59.632 47.826 0.00 0.00 41.37 5.19
101 102 3.006430 TGAAGATCACCTTACTTGCGACA 59.994 43.478 0.00 0.00 34.68 4.35
102 103 3.895232 AGATCACCTTACTTGCGACAT 57.105 42.857 0.00 0.00 0.00 3.06
103 104 4.207891 AGATCACCTTACTTGCGACATT 57.792 40.909 0.00 0.00 0.00 2.71
104 105 3.935203 AGATCACCTTACTTGCGACATTG 59.065 43.478 0.00 0.00 0.00 2.82
105 106 1.804151 TCACCTTACTTGCGACATTGC 59.196 47.619 0.00 0.00 0.00 3.56
106 107 1.806542 CACCTTACTTGCGACATTGCT 59.193 47.619 0.00 0.00 35.36 3.91
107 108 2.226437 CACCTTACTTGCGACATTGCTT 59.774 45.455 0.00 0.00 35.36 3.91
108 109 2.884639 ACCTTACTTGCGACATTGCTTT 59.115 40.909 0.00 0.00 35.36 3.51
109 110 3.058224 ACCTTACTTGCGACATTGCTTTC 60.058 43.478 0.00 0.00 35.36 2.62
110 111 3.058293 CCTTACTTGCGACATTGCTTTCA 60.058 43.478 0.00 0.00 35.36 2.69
111 112 4.536065 CTTACTTGCGACATTGCTTTCAA 58.464 39.130 0.00 0.00 36.51 2.69
112 113 3.648339 ACTTGCGACATTGCTTTCAAT 57.352 38.095 0.00 0.00 43.31 2.57
123 124 3.591196 TGCTTTCAATGTGGTTATGCC 57.409 42.857 0.00 0.00 37.90 4.40
124 125 3.164268 TGCTTTCAATGTGGTTATGCCT 58.836 40.909 0.00 0.00 38.35 4.75
125 126 3.193267 TGCTTTCAATGTGGTTATGCCTC 59.807 43.478 0.00 0.00 38.35 4.70
126 127 3.445096 GCTTTCAATGTGGTTATGCCTCT 59.555 43.478 0.00 0.00 38.35 3.69
127 128 4.640201 GCTTTCAATGTGGTTATGCCTCTA 59.360 41.667 0.00 0.00 38.35 2.43
128 129 5.125417 GCTTTCAATGTGGTTATGCCTCTAA 59.875 40.000 0.00 0.00 38.35 2.10
129 130 6.678900 GCTTTCAATGTGGTTATGCCTCTAAG 60.679 42.308 0.00 0.00 38.35 2.18
130 131 5.435686 TCAATGTGGTTATGCCTCTAAGT 57.564 39.130 0.00 0.00 38.35 2.24
131 132 5.428253 TCAATGTGGTTATGCCTCTAAGTC 58.572 41.667 0.00 0.00 38.35 3.01
132 133 3.520290 TGTGGTTATGCCTCTAAGTCG 57.480 47.619 0.00 0.00 38.35 4.18
133 134 2.829720 TGTGGTTATGCCTCTAAGTCGT 59.170 45.455 0.00 0.00 38.35 4.34
134 135 3.187700 GTGGTTATGCCTCTAAGTCGTG 58.812 50.000 0.00 0.00 38.35 4.35
135 136 2.202566 GGTTATGCCTCTAAGTCGTGC 58.797 52.381 0.00 0.00 0.00 5.34
136 137 2.159085 GGTTATGCCTCTAAGTCGTGCT 60.159 50.000 0.00 0.00 0.00 4.40
137 138 3.522553 GTTATGCCTCTAAGTCGTGCTT 58.477 45.455 0.00 1.30 41.05 3.91
138 139 2.301577 ATGCCTCTAAGTCGTGCTTC 57.698 50.000 0.00 0.00 38.57 3.86
139 140 0.109272 TGCCTCTAAGTCGTGCTTCG 60.109 55.000 0.00 0.00 38.57 3.79
140 141 0.170561 GCCTCTAAGTCGTGCTTCGA 59.829 55.000 0.92 0.92 46.83 3.71
149 150 4.021650 GTGCTTCGACACGTGGAA 57.978 55.556 21.57 13.31 0.00 3.53
150 151 1.853319 GTGCTTCGACACGTGGAAG 59.147 57.895 22.73 22.73 44.75 3.46
151 152 0.596600 GTGCTTCGACACGTGGAAGA 60.597 55.000 28.08 18.33 44.75 2.87
152 153 0.317160 TGCTTCGACACGTGGAAGAT 59.683 50.000 28.08 7.00 44.75 2.40
153 154 1.542472 TGCTTCGACACGTGGAAGATA 59.458 47.619 28.08 17.49 44.75 1.98
154 155 2.165641 TGCTTCGACACGTGGAAGATAT 59.834 45.455 28.08 5.61 44.75 1.63
155 156 3.379057 TGCTTCGACACGTGGAAGATATA 59.621 43.478 28.08 13.91 44.75 0.86
156 157 3.975670 GCTTCGACACGTGGAAGATATAG 59.024 47.826 28.08 16.10 44.75 1.31
157 158 3.620929 TCGACACGTGGAAGATATAGC 57.379 47.619 21.57 0.00 0.00 2.97
158 159 2.292569 TCGACACGTGGAAGATATAGCC 59.707 50.000 21.57 0.00 0.00 3.93
159 160 2.034179 CGACACGTGGAAGATATAGCCA 59.966 50.000 21.57 0.00 0.00 4.75
160 161 3.381949 GACACGTGGAAGATATAGCCAC 58.618 50.000 21.57 0.00 46.60 5.01
166 167 4.790765 TGGAAGATATAGCCACATCGAG 57.209 45.455 0.00 0.00 0.00 4.04
167 168 3.511540 TGGAAGATATAGCCACATCGAGG 59.488 47.826 0.00 0.00 0.00 4.63
168 169 3.118956 GGAAGATATAGCCACATCGAGGG 60.119 52.174 0.69 0.00 0.00 4.30
173 174 2.185867 GCCACATCGAGGGCGTTA 59.814 61.111 9.43 0.00 40.93 3.18
174 175 2.171725 GCCACATCGAGGGCGTTAC 61.172 63.158 9.43 0.00 40.93 2.50
175 176 1.216977 CCACATCGAGGGCGTTACA 59.783 57.895 0.69 0.00 38.98 2.41
176 177 1.082117 CCACATCGAGGGCGTTACAC 61.082 60.000 0.69 0.00 38.98 2.90
177 178 1.082117 CACATCGAGGGCGTTACACC 61.082 60.000 0.69 0.00 38.98 4.16
178 179 1.216977 CATCGAGGGCGTTACACCA 59.783 57.895 0.00 0.00 38.98 4.17
179 180 0.806102 CATCGAGGGCGTTACACCAG 60.806 60.000 0.00 0.00 38.98 4.00
180 181 1.255667 ATCGAGGGCGTTACACCAGT 61.256 55.000 0.00 0.00 38.98 4.00
181 182 1.736645 CGAGGGCGTTACACCAGTG 60.737 63.158 0.00 0.00 0.00 3.66
182 183 1.370064 GAGGGCGTTACACCAGTGT 59.630 57.895 8.71 8.71 46.87 3.55
183 184 0.250166 GAGGGCGTTACACCAGTGTT 60.250 55.000 9.01 0.00 41.83 3.32
184 185 0.534203 AGGGCGTTACACCAGTGTTG 60.534 55.000 9.01 1.34 41.83 3.33
185 186 0.816421 GGGCGTTACACCAGTGTTGT 60.816 55.000 9.01 0.00 41.83 3.32
186 187 1.018910 GGCGTTACACCAGTGTTGTT 58.981 50.000 9.01 0.00 41.83 2.83
187 188 1.268335 GGCGTTACACCAGTGTTGTTG 60.268 52.381 9.01 0.00 41.83 3.33
188 189 1.666700 GCGTTACACCAGTGTTGTTGA 59.333 47.619 9.01 0.00 41.83 3.18
189 190 2.096174 GCGTTACACCAGTGTTGTTGAA 59.904 45.455 9.01 0.00 41.83 2.69
190 191 3.426426 GCGTTACACCAGTGTTGTTGAAA 60.426 43.478 9.01 0.00 41.83 2.69
191 192 4.724303 CGTTACACCAGTGTTGTTGAAAA 58.276 39.130 9.01 0.00 41.83 2.29
192 193 5.154932 CGTTACACCAGTGTTGTTGAAAAA 58.845 37.500 9.01 0.00 41.83 1.94
215 216 9.709495 AAAAACAAAGAAATGCAATATGCTAGA 57.291 25.926 3.78 0.00 45.31 2.43
216 217 8.693542 AAACAAAGAAATGCAATATGCTAGAC 57.306 30.769 3.78 0.00 45.31 2.59
217 218 6.799512 ACAAAGAAATGCAATATGCTAGACC 58.200 36.000 3.78 0.00 45.31 3.85
218 219 6.377996 ACAAAGAAATGCAATATGCTAGACCA 59.622 34.615 3.78 0.00 45.31 4.02
219 220 7.093814 ACAAAGAAATGCAATATGCTAGACCAA 60.094 33.333 3.78 0.00 45.31 3.67
220 221 7.408756 AAGAAATGCAATATGCTAGACCAAA 57.591 32.000 3.78 0.00 45.31 3.28
221 222 7.592885 AGAAATGCAATATGCTAGACCAAAT 57.407 32.000 3.78 0.00 45.31 2.32
222 223 8.015185 AGAAATGCAATATGCTAGACCAAATT 57.985 30.769 3.78 0.00 45.31 1.82
223 224 9.135189 AGAAATGCAATATGCTAGACCAAATTA 57.865 29.630 3.78 0.00 45.31 1.40
224 225 9.748708 GAAATGCAATATGCTAGACCAAATTAA 57.251 29.630 3.78 0.00 45.31 1.40
225 226 9.754382 AAATGCAATATGCTAGACCAAATTAAG 57.246 29.630 3.78 0.00 45.31 1.85
226 227 7.275888 TGCAATATGCTAGACCAAATTAAGG 57.724 36.000 3.78 0.00 45.31 2.69
227 228 6.833416 TGCAATATGCTAGACCAAATTAAGGT 59.167 34.615 3.78 2.33 45.31 3.50
228 229 7.141363 GCAATATGCTAGACCAAATTAAGGTG 58.859 38.462 7.19 0.00 40.96 4.00
229 230 6.884280 ATATGCTAGACCAAATTAAGGTGC 57.116 37.500 7.19 5.75 40.09 5.01
230 231 4.027674 TGCTAGACCAAATTAAGGTGCA 57.972 40.909 7.19 7.96 40.09 4.57
231 232 4.402829 TGCTAGACCAAATTAAGGTGCAA 58.597 39.130 7.19 0.00 40.09 4.08
232 233 4.830046 TGCTAGACCAAATTAAGGTGCAAA 59.170 37.500 7.19 0.00 40.09 3.68
233 234 5.480073 TGCTAGACCAAATTAAGGTGCAAAT 59.520 36.000 7.19 0.00 40.09 2.32
234 235 6.014669 TGCTAGACCAAATTAAGGTGCAAATT 60.015 34.615 7.19 0.00 40.09 1.82
235 236 6.873605 GCTAGACCAAATTAAGGTGCAAATTT 59.126 34.615 7.19 1.77 40.09 1.82
236 237 8.032451 GCTAGACCAAATTAAGGTGCAAATTTA 58.968 33.333 7.19 0.00 40.09 1.40
237 238 9.921637 CTAGACCAAATTAAGGTGCAAATTTAA 57.078 29.630 7.19 4.33 40.09 1.52
239 240 9.791801 AGACCAAATTAAGGTGCAAATTTAATT 57.208 25.926 7.19 13.88 40.09 1.40
249 250 3.497118 GCAAATTTAATTTTTGCGGGCC 58.503 40.909 16.12 0.00 46.46 5.80
250 251 3.741687 CAAATTTAATTTTTGCGGGCCG 58.258 40.909 24.35 24.35 0.00 6.13
251 252 3.320673 AATTTAATTTTTGCGGGCCGA 57.679 38.095 33.44 12.50 0.00 5.54
252 253 2.355717 TTTAATTTTTGCGGGCCGAG 57.644 45.000 33.44 0.84 0.00 4.63
253 254 1.535833 TTAATTTTTGCGGGCCGAGA 58.464 45.000 33.44 14.55 0.00 4.04
254 255 1.091537 TAATTTTTGCGGGCCGAGAG 58.908 50.000 33.44 0.00 0.00 3.20
255 256 0.608035 AATTTTTGCGGGCCGAGAGA 60.608 50.000 33.44 11.17 0.00 3.10
256 257 0.608035 ATTTTTGCGGGCCGAGAGAA 60.608 50.000 33.44 18.05 0.00 2.87
257 258 0.820074 TTTTTGCGGGCCGAGAGAAA 60.820 50.000 33.44 18.89 0.00 2.52
258 259 0.608035 TTTTGCGGGCCGAGAGAAAT 60.608 50.000 33.44 0.00 0.00 2.17
259 260 0.608035 TTTGCGGGCCGAGAGAAATT 60.608 50.000 33.44 0.00 0.00 1.82
260 261 1.305219 TTGCGGGCCGAGAGAAATTG 61.305 55.000 33.44 0.00 0.00 2.32
261 262 3.102097 CGGGCCGAGAGAAATTGC 58.898 61.111 24.41 0.00 0.00 3.56
262 263 2.813179 CGGGCCGAGAGAAATTGCG 61.813 63.158 24.41 0.00 0.00 4.85
263 264 2.405191 GGCCGAGAGAAATTGCGC 59.595 61.111 0.00 0.00 0.00 6.09
264 265 2.405191 GCCGAGAGAAATTGCGCC 59.595 61.111 4.18 0.00 0.00 6.53
265 266 2.398554 GCCGAGAGAAATTGCGCCA 61.399 57.895 4.18 0.00 0.00 5.69
266 267 1.718757 GCCGAGAGAAATTGCGCCAT 61.719 55.000 4.18 0.00 0.00 4.40
267 268 1.581934 CCGAGAGAAATTGCGCCATA 58.418 50.000 4.18 0.00 0.00 2.74
268 269 2.146342 CCGAGAGAAATTGCGCCATAT 58.854 47.619 4.18 0.00 0.00 1.78
269 270 2.158449 CCGAGAGAAATTGCGCCATATC 59.842 50.000 4.18 0.00 0.00 1.63
270 271 2.802247 CGAGAGAAATTGCGCCATATCA 59.198 45.455 4.18 0.00 0.00 2.15
271 272 3.120752 CGAGAGAAATTGCGCCATATCAG 60.121 47.826 4.18 0.00 0.00 2.90
272 273 4.060900 GAGAGAAATTGCGCCATATCAGA 58.939 43.478 4.18 0.00 0.00 3.27
273 274 3.812053 AGAGAAATTGCGCCATATCAGAC 59.188 43.478 4.18 0.00 0.00 3.51
274 275 3.544684 AGAAATTGCGCCATATCAGACA 58.455 40.909 4.18 0.00 0.00 3.41
275 276 3.313526 AGAAATTGCGCCATATCAGACAC 59.686 43.478 4.18 0.00 0.00 3.67
276 277 2.330440 ATTGCGCCATATCAGACACA 57.670 45.000 4.18 0.00 0.00 3.72
277 278 1.655484 TTGCGCCATATCAGACACAG 58.345 50.000 4.18 0.00 0.00 3.66
278 279 0.811219 TGCGCCATATCAGACACAGC 60.811 55.000 4.18 0.00 0.00 4.40
279 280 0.811219 GCGCCATATCAGACACAGCA 60.811 55.000 0.00 0.00 0.00 4.41
280 281 1.655484 CGCCATATCAGACACAGCAA 58.345 50.000 0.00 0.00 0.00 3.91
281 282 2.009051 CGCCATATCAGACACAGCAAA 58.991 47.619 0.00 0.00 0.00 3.68
282 283 2.031314 CGCCATATCAGACACAGCAAAG 59.969 50.000 0.00 0.00 0.00 2.77
283 284 2.223433 GCCATATCAGACACAGCAAAGC 60.223 50.000 0.00 0.00 0.00 3.51
284 285 2.357009 CCATATCAGACACAGCAAAGCC 59.643 50.000 0.00 0.00 0.00 4.35
285 286 1.725641 TATCAGACACAGCAAAGCCG 58.274 50.000 0.00 0.00 0.00 5.52
286 287 0.035317 ATCAGACACAGCAAAGCCGA 59.965 50.000 0.00 0.00 0.00 5.54
287 288 0.880278 TCAGACACAGCAAAGCCGAC 60.880 55.000 0.00 0.00 0.00 4.79
288 289 1.598130 AGACACAGCAAAGCCGACC 60.598 57.895 0.00 0.00 0.00 4.79
289 290 2.594592 ACACAGCAAAGCCGACCC 60.595 61.111 0.00 0.00 0.00 4.46
290 291 3.726517 CACAGCAAAGCCGACCCG 61.727 66.667 0.00 0.00 0.00 5.28
291 292 4.250305 ACAGCAAAGCCGACCCGT 62.250 61.111 0.00 0.00 0.00 5.28
292 293 2.047655 CAGCAAAGCCGACCCGTA 60.048 61.111 0.00 0.00 0.00 4.02
293 294 1.669760 CAGCAAAGCCGACCCGTAA 60.670 57.895 0.00 0.00 0.00 3.18
294 295 1.071814 AGCAAAGCCGACCCGTAAA 59.928 52.632 0.00 0.00 0.00 2.01
295 296 0.535553 AGCAAAGCCGACCCGTAAAA 60.536 50.000 0.00 0.00 0.00 1.52
296 297 0.311477 GCAAAGCCGACCCGTAAAAA 59.689 50.000 0.00 0.00 0.00 1.94
341 342 5.772393 TTTATAGATCCATTATGCGGGGT 57.228 39.130 0.00 0.00 0.00 4.95
342 343 3.914426 ATAGATCCATTATGCGGGGTC 57.086 47.619 0.00 0.00 34.37 4.46
343 344 1.734655 AGATCCATTATGCGGGGTCT 58.265 50.000 0.00 0.00 39.83 3.85
344 345 1.349026 AGATCCATTATGCGGGGTCTG 59.651 52.381 0.00 0.00 42.99 3.51
345 346 0.250901 ATCCATTATGCGGGGTCTGC 60.251 55.000 0.00 0.00 0.00 4.26
347 348 0.751277 CCATTATGCGGGGTCTGCAA 60.751 55.000 5.47 0.00 46.87 4.08
348 349 0.381801 CATTATGCGGGGTCTGCAAC 59.618 55.000 5.47 0.00 46.87 4.17
349 350 0.255890 ATTATGCGGGGTCTGCAACT 59.744 50.000 5.47 0.00 46.87 3.16
350 351 0.906066 TTATGCGGGGTCTGCAACTA 59.094 50.000 5.47 0.00 46.87 2.24
351 352 0.177141 TATGCGGGGTCTGCAACTAC 59.823 55.000 5.47 0.00 46.87 2.73
352 353 2.813908 GCGGGGTCTGCAACTACG 60.814 66.667 0.00 0.43 0.00 3.51
353 354 2.125673 CGGGGTCTGCAACTACGG 60.126 66.667 0.00 0.00 0.00 4.02
354 355 2.436115 GGGGTCTGCAACTACGGC 60.436 66.667 0.00 0.00 0.00 5.68
355 356 2.345991 GGGTCTGCAACTACGGCA 59.654 61.111 0.00 0.00 39.32 5.69
377 378 3.670377 GTGCCGGCCCACAAAGAC 61.670 66.667 26.77 9.00 35.80 3.01
380 381 2.593436 CCGGCCCACAAAGACGTT 60.593 61.111 0.00 0.00 0.00 3.99
381 382 2.190841 CCGGCCCACAAAGACGTTT 61.191 57.895 0.00 0.00 0.00 3.60
382 383 1.730451 CCGGCCCACAAAGACGTTTT 61.730 55.000 0.00 0.00 0.00 2.43
383 384 0.101579 CGGCCCACAAAGACGTTTTT 59.898 50.000 0.00 0.00 0.00 1.94
384 385 1.847818 GGCCCACAAAGACGTTTTTC 58.152 50.000 0.30 0.00 0.00 2.29
385 386 1.537348 GGCCCACAAAGACGTTTTTCC 60.537 52.381 0.30 0.00 0.00 3.13
386 387 1.862411 GCCCACAAAGACGTTTTTCCG 60.862 52.381 0.30 0.00 0.00 4.30
387 388 1.472990 CCACAAAGACGTTTTTCCGC 58.527 50.000 0.30 0.00 0.00 5.54
388 389 1.109296 CACAAAGACGTTTTTCCGCG 58.891 50.000 0.00 0.00 0.00 6.46
389 390 1.008329 ACAAAGACGTTTTTCCGCGA 58.992 45.000 8.23 0.00 0.00 5.87
390 391 1.397692 ACAAAGACGTTTTTCCGCGAA 59.602 42.857 8.23 0.00 0.00 4.70
391 392 1.771291 CAAAGACGTTTTTCCGCGAAC 59.229 47.619 8.23 2.38 0.00 3.95
392 393 1.292992 AAGACGTTTTTCCGCGAACT 58.707 45.000 8.23 0.00 0.00 3.01
393 394 0.580104 AGACGTTTTTCCGCGAACTG 59.420 50.000 8.23 3.34 0.00 3.16
394 395 0.990295 GACGTTTTTCCGCGAACTGC 60.990 55.000 8.23 0.00 41.47 4.40
395 396 1.010574 CGTTTTTCCGCGAACTGCA 60.011 52.632 8.23 0.00 46.97 4.41
396 397 0.590230 CGTTTTTCCGCGAACTGCAA 60.590 50.000 8.23 0.00 46.97 4.08
397 398 1.551145 GTTTTTCCGCGAACTGCAAA 58.449 45.000 8.23 0.00 46.97 3.68
398 399 1.254313 GTTTTTCCGCGAACTGCAAAC 59.746 47.619 8.23 4.18 46.97 2.93
399 400 0.452184 TTTTCCGCGAACTGCAAACA 59.548 45.000 8.23 0.00 46.97 2.83
400 401 0.248296 TTTCCGCGAACTGCAAACAC 60.248 50.000 8.23 0.00 46.97 3.32
401 402 1.369839 TTCCGCGAACTGCAAACACA 61.370 50.000 8.23 0.00 46.97 3.72
402 403 1.163420 TCCGCGAACTGCAAACACAT 61.163 50.000 8.23 0.00 46.97 3.21
403 404 0.317770 CCGCGAACTGCAAACACATT 60.318 50.000 8.23 0.00 46.97 2.71
404 405 1.476074 CGCGAACTGCAAACACATTT 58.524 45.000 0.00 0.00 46.97 2.32
405 406 1.851666 CGCGAACTGCAAACACATTTT 59.148 42.857 0.00 0.00 46.97 1.82
406 407 2.346558 CGCGAACTGCAAACACATTTTG 60.347 45.455 0.00 0.00 46.97 2.44
411 412 1.569003 GCAAACACATTTTGCGGGC 59.431 52.632 6.00 0.00 44.13 6.13
412 413 1.840630 GCAAACACATTTTGCGGGCC 61.841 55.000 6.00 0.00 44.13 5.80
413 414 1.300542 AAACACATTTTGCGGGCCG 60.301 52.632 24.35 24.35 0.00 6.13
414 415 1.739338 AAACACATTTTGCGGGCCGA 61.739 50.000 33.44 12.50 0.00 5.54
415 416 1.739338 AACACATTTTGCGGGCCGAA 61.739 50.000 33.44 19.61 0.00 4.30
416 417 1.006805 CACATTTTGCGGGCCGAAA 60.007 52.632 33.44 25.66 0.00 3.46
417 418 1.008361 CACATTTTGCGGGCCGAAAG 61.008 55.000 33.44 16.87 30.54 2.62
429 430 2.663196 CGAAAGGAAGCGGGGTCT 59.337 61.111 0.00 0.00 0.00 3.85
430 431 1.741770 CGAAAGGAAGCGGGGTCTG 60.742 63.158 0.00 0.00 0.00 3.51
431 432 2.034221 AAAGGAAGCGGGGTCTGC 59.966 61.111 0.00 0.00 0.00 4.26
432 433 2.470938 GAAAGGAAGCGGGGTCTGCT 62.471 60.000 0.00 0.00 46.68 4.24
433 434 1.198759 AAAGGAAGCGGGGTCTGCTA 61.199 55.000 1.34 0.00 43.14 3.49
434 435 1.617947 AAGGAAGCGGGGTCTGCTAG 61.618 60.000 1.34 0.00 43.14 3.42
435 436 2.058595 GGAAGCGGGGTCTGCTAGA 61.059 63.158 1.34 0.00 43.14 2.43
436 437 1.439644 GAAGCGGGGTCTGCTAGAG 59.560 63.158 1.34 0.00 43.14 2.43
437 438 1.305381 AAGCGGGGTCTGCTAGAGT 60.305 57.895 1.34 0.00 43.14 3.24
438 439 0.905337 AAGCGGGGTCTGCTAGAGTT 60.905 55.000 1.34 0.00 43.14 3.01
439 440 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
440 441 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
441 442 1.222113 GGGGTCTGCTAGAGTTGCC 59.778 63.158 0.00 0.00 0.00 4.52
442 443 1.222113 GGGTCTGCTAGAGTTGCCC 59.778 63.158 0.00 0.00 0.00 5.36
452 453 1.140312 AGAGTTGCCCTCAGAACCAA 58.860 50.000 3.62 0.00 43.12 3.67
498 499 2.068837 ACATGAAAATGTTGCAGGCG 57.931 45.000 0.00 0.00 0.00 5.52
507 508 0.882484 TGTTGCAGGCGATCAAACGA 60.882 50.000 0.00 0.00 35.09 3.85
557 559 5.550290 TGTCTTCAAGCATCAACTATCACA 58.450 37.500 0.00 0.00 0.00 3.58
559 561 5.641209 GTCTTCAAGCATCAACTATCACACT 59.359 40.000 0.00 0.00 0.00 3.55
571 573 4.704833 CACACTCGCTGGGGTGGG 62.705 72.222 14.39 8.88 37.72 4.61
577 579 4.278513 CGCTGGGGTGGGGTCAAA 62.279 66.667 0.00 0.00 0.00 2.69
578 580 2.600470 GCTGGGGTGGGGTCAAAC 60.600 66.667 0.00 0.00 0.00 2.93
579 581 2.931107 CTGGGGTGGGGTCAAACA 59.069 61.111 0.00 0.00 0.00 2.83
580 582 1.530655 CTGGGGTGGGGTCAAACAC 60.531 63.158 0.00 0.00 36.89 3.32
581 583 2.006805 CTGGGGTGGGGTCAAACACT 62.007 60.000 0.00 0.00 37.72 3.55
582 584 1.228459 GGGGTGGGGTCAAACACTC 60.228 63.158 0.00 0.00 37.36 3.51
583 585 1.716028 GGGGTGGGGTCAAACACTCT 61.716 60.000 0.00 0.00 38.16 3.24
584 586 0.537371 GGGTGGGGTCAAACACTCTG 60.537 60.000 0.00 0.00 35.24 3.35
585 587 0.537371 GGTGGGGTCAAACACTCTGG 60.537 60.000 0.00 0.00 37.72 3.86
586 588 0.182775 GTGGGGTCAAACACTCTGGT 59.817 55.000 0.00 0.00 34.84 4.00
587 589 1.418637 GTGGGGTCAAACACTCTGGTA 59.581 52.381 0.00 0.00 34.84 3.25
588 590 2.128535 TGGGGTCAAACACTCTGGTAA 58.871 47.619 0.00 0.00 0.00 2.85
589 591 2.714250 TGGGGTCAAACACTCTGGTAAT 59.286 45.455 0.00 0.00 0.00 1.89
590 592 3.911260 TGGGGTCAAACACTCTGGTAATA 59.089 43.478 0.00 0.00 0.00 0.98
591 593 4.019681 TGGGGTCAAACACTCTGGTAATAG 60.020 45.833 0.00 0.00 0.00 1.73
592 594 3.939592 GGGTCAAACACTCTGGTAATAGC 59.060 47.826 0.00 0.00 0.00 2.97
593 595 4.564821 GGGTCAAACACTCTGGTAATAGCA 60.565 45.833 0.00 0.00 0.00 3.49
594 596 4.392138 GGTCAAACACTCTGGTAATAGCAC 59.608 45.833 0.00 0.00 0.00 4.40
595 597 5.238583 GTCAAACACTCTGGTAATAGCACT 58.761 41.667 0.00 0.00 0.00 4.40
596 598 5.120830 GTCAAACACTCTGGTAATAGCACTG 59.879 44.000 0.00 0.00 0.00 3.66
597 599 3.252974 ACACTCTGGTAATAGCACTGC 57.747 47.619 0.00 0.00 0.00 4.40
598 600 2.834549 ACACTCTGGTAATAGCACTGCT 59.165 45.455 8.95 8.95 43.41 4.24
599 601 4.023980 ACACTCTGGTAATAGCACTGCTA 58.976 43.478 13.19 13.19 45.55 3.49
600 602 4.466370 ACACTCTGGTAATAGCACTGCTAA 59.534 41.667 14.74 0.00 44.62 3.09
601 603 4.806247 CACTCTGGTAATAGCACTGCTAAC 59.194 45.833 14.74 9.24 44.62 2.34
602 604 4.141914 ACTCTGGTAATAGCACTGCTAACC 60.142 45.833 19.25 19.25 44.62 2.85
603 605 4.030913 TCTGGTAATAGCACTGCTAACCT 58.969 43.478 23.62 12.16 44.62 3.50
604 606 4.099573 TCTGGTAATAGCACTGCTAACCTC 59.900 45.833 23.62 12.59 44.62 3.85
605 607 4.030913 TGGTAATAGCACTGCTAACCTCT 58.969 43.478 23.62 4.82 44.62 3.69
606 608 4.141937 TGGTAATAGCACTGCTAACCTCTG 60.142 45.833 23.62 0.00 44.62 3.35
607 609 2.611225 ATAGCACTGCTAACCTCTGC 57.389 50.000 14.74 0.00 44.62 4.26
608 610 1.561643 TAGCACTGCTAACCTCTGCT 58.438 50.000 8.37 0.00 38.27 4.24
609 611 0.248843 AGCACTGCTAACCTCTGCTC 59.751 55.000 0.21 0.00 36.99 4.26
610 612 0.742635 GCACTGCTAACCTCTGCTCC 60.743 60.000 0.00 0.00 0.00 4.70
611 613 0.610174 CACTGCTAACCTCTGCTCCA 59.390 55.000 0.00 0.00 0.00 3.86
612 614 0.901124 ACTGCTAACCTCTGCTCCAG 59.099 55.000 0.00 0.00 0.00 3.86
613 615 0.461693 CTGCTAACCTCTGCTCCAGC 60.462 60.000 0.00 0.00 42.50 4.85
623 625 2.513435 GCTCCAGCACTGCTAGCC 60.513 66.667 13.29 0.00 36.40 3.93
624 626 2.202851 CTCCAGCACTGCTAGCCG 60.203 66.667 13.29 8.69 36.40 5.52
625 627 4.457496 TCCAGCACTGCTAGCCGC 62.457 66.667 13.29 12.38 36.40 6.53
627 629 3.494336 CAGCACTGCTAGCCGCAC 61.494 66.667 13.29 1.36 45.47 5.34
628 630 4.007644 AGCACTGCTAGCCGCACA 62.008 61.111 13.29 0.00 45.47 4.57
629 631 3.793144 GCACTGCTAGCCGCACAC 61.793 66.667 13.29 0.00 45.47 3.82
630 632 2.357396 CACTGCTAGCCGCACACA 60.357 61.111 13.29 0.00 45.47 3.72
631 633 1.742880 CACTGCTAGCCGCACACAT 60.743 57.895 13.29 0.00 45.47 3.21
632 634 1.448540 ACTGCTAGCCGCACACATC 60.449 57.895 13.29 0.00 45.47 3.06
633 635 1.153489 CTGCTAGCCGCACACATCT 60.153 57.895 13.29 0.00 45.47 2.90
634 636 1.150567 CTGCTAGCCGCACACATCTC 61.151 60.000 13.29 0.00 45.47 2.75
635 637 2.233654 GCTAGCCGCACACATCTCG 61.234 63.158 2.29 0.00 38.92 4.04
636 638 1.139734 CTAGCCGCACACATCTCGT 59.860 57.895 0.00 0.00 0.00 4.18
637 639 0.380733 CTAGCCGCACACATCTCGTA 59.619 55.000 0.00 0.00 0.00 3.43
638 640 0.812549 TAGCCGCACACATCTCGTAA 59.187 50.000 0.00 0.00 0.00 3.18
639 641 0.037697 AGCCGCACACATCTCGTAAA 60.038 50.000 0.00 0.00 0.00 2.01
640 642 0.793861 GCCGCACACATCTCGTAAAA 59.206 50.000 0.00 0.00 0.00 1.52
641 643 1.396996 GCCGCACACATCTCGTAAAAT 59.603 47.619 0.00 0.00 0.00 1.82
642 644 2.605818 GCCGCACACATCTCGTAAAATA 59.394 45.455 0.00 0.00 0.00 1.40
643 645 3.302480 GCCGCACACATCTCGTAAAATAG 60.302 47.826 0.00 0.00 0.00 1.73
644 646 3.245284 CCGCACACATCTCGTAAAATAGG 59.755 47.826 0.00 0.00 0.00 2.57
645 647 4.109766 CGCACACATCTCGTAAAATAGGA 58.890 43.478 0.00 0.00 0.00 2.94
646 648 4.565166 CGCACACATCTCGTAAAATAGGAA 59.435 41.667 0.00 0.00 0.00 3.36
647 649 5.500290 CGCACACATCTCGTAAAATAGGAAC 60.500 44.000 0.00 0.00 0.00 3.62
648 650 5.500290 GCACACATCTCGTAAAATAGGAACG 60.500 44.000 0.00 0.00 37.96 3.95
649 651 5.005394 CACACATCTCGTAAAATAGGAACGG 59.995 44.000 0.00 0.00 37.24 4.44
650 652 5.107133 CACATCTCGTAAAATAGGAACGGT 58.893 41.667 0.00 0.00 37.24 4.83
651 653 5.579511 CACATCTCGTAAAATAGGAACGGTT 59.420 40.000 0.00 0.00 37.24 4.44
652 654 5.579511 ACATCTCGTAAAATAGGAACGGTTG 59.420 40.000 0.00 0.00 37.24 3.77
653 655 5.389859 TCTCGTAAAATAGGAACGGTTGA 57.610 39.130 0.00 0.00 37.24 3.18
654 656 5.404946 TCTCGTAAAATAGGAACGGTTGAG 58.595 41.667 0.00 0.00 37.24 3.02
655 657 5.183713 TCTCGTAAAATAGGAACGGTTGAGA 59.816 40.000 0.00 0.00 37.24 3.27
656 658 5.969423 TCGTAAAATAGGAACGGTTGAGAT 58.031 37.500 0.00 0.00 37.24 2.75
657 659 7.067372 TCTCGTAAAATAGGAACGGTTGAGATA 59.933 37.037 0.00 0.00 37.24 1.98
658 660 7.546358 TCGTAAAATAGGAACGGTTGAGATAA 58.454 34.615 0.00 0.00 37.24 1.75
659 661 8.199449 TCGTAAAATAGGAACGGTTGAGATAAT 58.801 33.333 0.00 0.00 37.24 1.28
660 662 8.273557 CGTAAAATAGGAACGGTTGAGATAATG 58.726 37.037 0.00 0.00 33.13 1.90
661 663 7.568199 AAAATAGGAACGGTTGAGATAATGG 57.432 36.000 0.00 0.00 0.00 3.16
662 664 6.494666 AATAGGAACGGTTGAGATAATGGA 57.505 37.500 0.00 0.00 0.00 3.41
663 665 4.138487 AGGAACGGTTGAGATAATGGAC 57.862 45.455 0.00 0.00 0.00 4.02
664 666 3.517901 AGGAACGGTTGAGATAATGGACA 59.482 43.478 0.00 0.00 0.00 4.02
665 667 3.621715 GGAACGGTTGAGATAATGGACAC 59.378 47.826 0.00 0.00 0.00 3.67
666 668 3.261981 ACGGTTGAGATAATGGACACC 57.738 47.619 0.00 0.00 0.00 4.16
667 669 2.569853 ACGGTTGAGATAATGGACACCA 59.430 45.455 0.00 0.00 38.19 4.17
669 671 3.561310 CGGTTGAGATAATGGACACCATG 59.439 47.826 3.97 0.00 44.40 3.66
670 672 4.526970 GGTTGAGATAATGGACACCATGT 58.473 43.478 3.97 0.00 44.40 3.21
671 673 5.680619 GGTTGAGATAATGGACACCATGTA 58.319 41.667 3.97 0.88 44.40 2.29
672 674 5.760253 GGTTGAGATAATGGACACCATGTAG 59.240 44.000 3.97 0.00 44.40 2.74
673 675 4.960938 TGAGATAATGGACACCATGTAGC 58.039 43.478 3.97 3.08 44.40 3.58
674 676 4.655649 TGAGATAATGGACACCATGTAGCT 59.344 41.667 3.97 7.10 44.40 3.32
675 677 5.220710 AGATAATGGACACCATGTAGCTC 57.779 43.478 3.97 0.00 44.40 4.09
676 678 2.315925 AATGGACACCATGTAGCTCG 57.684 50.000 3.97 0.00 44.40 5.03
677 679 1.195115 ATGGACACCATGTAGCTCGT 58.805 50.000 2.28 0.00 43.39 4.18
678 680 0.530744 TGGACACCATGTAGCTCGTC 59.469 55.000 0.00 0.00 0.00 4.20
679 681 0.179108 GGACACCATGTAGCTCGTCC 60.179 60.000 0.00 0.00 36.46 4.79
680 682 0.818296 GACACCATGTAGCTCGTCCT 59.182 55.000 0.00 0.00 0.00 3.85
681 683 2.022195 GACACCATGTAGCTCGTCCTA 58.978 52.381 0.00 0.00 0.00 2.94
682 684 1.749634 ACACCATGTAGCTCGTCCTAC 59.250 52.381 0.00 7.86 38.50 3.18
687 689 2.579207 TGTAGCTCGTCCTACATTGC 57.421 50.000 11.87 0.00 41.89 3.56
688 690 1.822371 TGTAGCTCGTCCTACATTGCA 59.178 47.619 11.87 0.00 41.89 4.08
689 691 2.232696 TGTAGCTCGTCCTACATTGCAA 59.767 45.455 0.00 0.00 41.89 4.08
690 692 1.726853 AGCTCGTCCTACATTGCAAC 58.273 50.000 0.00 0.00 0.00 4.17
691 693 1.276421 AGCTCGTCCTACATTGCAACT 59.724 47.619 0.00 0.00 0.00 3.16
692 694 2.076863 GCTCGTCCTACATTGCAACTT 58.923 47.619 0.00 0.00 0.00 2.66
693 695 2.484264 GCTCGTCCTACATTGCAACTTT 59.516 45.455 0.00 0.00 0.00 2.66
694 696 3.424962 GCTCGTCCTACATTGCAACTTTC 60.425 47.826 0.00 0.00 0.00 2.62
695 697 3.071479 TCGTCCTACATTGCAACTTTCC 58.929 45.455 0.00 0.00 0.00 3.13
737 739 5.044919 TGGTCCAAACATCAATACAGGATCT 60.045 40.000 0.00 0.00 0.00 2.75
738 740 6.157820 TGGTCCAAACATCAATACAGGATCTA 59.842 38.462 0.00 0.00 0.00 1.98
739 741 6.483640 GGTCCAAACATCAATACAGGATCTAC 59.516 42.308 0.00 0.00 0.00 2.59
740 742 7.047891 GTCCAAACATCAATACAGGATCTACA 58.952 38.462 0.00 0.00 0.00 2.74
741 743 7.552687 GTCCAAACATCAATACAGGATCTACAA 59.447 37.037 0.00 0.00 0.00 2.41
742 744 8.274322 TCCAAACATCAATACAGGATCTACAAT 58.726 33.333 0.00 0.00 0.00 2.71
743 745 9.559732 CCAAACATCAATACAGGATCTACAATA 57.440 33.333 0.00 0.00 0.00 1.90
810 936 1.198713 CTATCACTCAGGCTGTGGGT 58.801 55.000 17.53 10.86 42.49 4.51
823 949 2.507484 CTGTGGGTGATTGTGTCATGT 58.493 47.619 0.00 0.00 39.48 3.21
824 950 2.886523 CTGTGGGTGATTGTGTCATGTT 59.113 45.455 0.00 0.00 39.48 2.71
992 1119 6.937465 CAGGAAGGAAAGGAATATAGCTAACC 59.063 42.308 0.00 0.00 0.00 2.85
994 1121 4.895961 AGGAAAGGAATATAGCTAACCGC 58.104 43.478 0.00 0.00 39.57 5.68
1032 1159 0.669625 GTAGCAACGCTCGGGTCTTT 60.670 55.000 0.00 0.00 40.44 2.52
1096 1223 5.494724 CCTGTGATGCAGCAGGTATATATT 58.505 41.667 20.34 0.00 45.28 1.28
1227 1354 1.449778 GTACCCGAGAAAGCCTGCC 60.450 63.158 0.00 0.00 0.00 4.85
1247 1374 1.197430 AGACCCCAGCAGGACTTCAG 61.197 60.000 0.00 0.00 38.24 3.02
1312 1439 1.017387 GAGGATAAAAGCCACTGCGG 58.983 55.000 0.00 0.00 44.33 5.69
1352 1479 6.036735 GCTGTGAAAAGTAATATAAGCCGTCA 59.963 38.462 0.00 0.00 0.00 4.35
1382 1509 4.678509 TGTTATGTGCTGGAACGATTTC 57.321 40.909 0.00 0.00 0.00 2.17
1565 1692 7.012327 CCTCCAATCAAAAGAAAAAGGAAAACC 59.988 37.037 0.00 0.00 0.00 3.27
1608 1735 0.321210 CACACAACATCCACCGCCTA 60.321 55.000 0.00 0.00 0.00 3.93
1619 1746 3.511595 CCGCCTACGTAGCCGTCA 61.512 66.667 22.52 0.00 46.28 4.35
1635 1762 3.546815 GCCGTCAGATTGATTTTGATCGG 60.547 47.826 0.00 0.00 37.94 4.18
1672 1799 2.047560 GTCCCGTGCGGCTAGTTT 60.048 61.111 4.91 0.00 0.00 2.66
1702 1833 2.187351 GCAACAAGCGTCTTGTTTCA 57.813 45.000 25.28 0.00 40.30 2.69
1703 1834 2.525055 GCAACAAGCGTCTTGTTTCAA 58.475 42.857 25.28 0.00 40.30 2.69
1704 1835 2.920490 GCAACAAGCGTCTTGTTTCAAA 59.080 40.909 25.28 0.00 40.30 2.69
1705 1836 3.366422 GCAACAAGCGTCTTGTTTCAAAA 59.634 39.130 25.28 0.00 40.30 2.44
1706 1837 4.490799 GCAACAAGCGTCTTGTTTCAAAAG 60.491 41.667 25.28 17.56 40.30 2.27
1707 1838 3.179048 ACAAGCGTCTTGTTTCAAAAGC 58.821 40.909 16.24 0.00 0.00 3.51
1708 1839 3.119495 ACAAGCGTCTTGTTTCAAAAGCT 60.119 39.130 16.24 0.00 34.96 3.74
1709 1840 3.782889 AGCGTCTTGTTTCAAAAGCTT 57.217 38.095 0.00 0.00 0.00 3.74
1710 1841 4.110036 AGCGTCTTGTTTCAAAAGCTTT 57.890 36.364 5.69 5.69 0.00 3.51
1711 1842 4.105486 AGCGTCTTGTTTCAAAAGCTTTC 58.895 39.130 13.10 0.00 0.00 2.62
1712 1843 4.105486 GCGTCTTGTTTCAAAAGCTTTCT 58.895 39.130 13.10 0.00 0.00 2.52
1713 1844 5.065988 AGCGTCTTGTTTCAAAAGCTTTCTA 59.934 36.000 13.10 0.34 0.00 2.10
1714 1845 5.171516 GCGTCTTGTTTCAAAAGCTTTCTAC 59.828 40.000 13.10 8.76 0.00 2.59
1715 1846 5.392585 CGTCTTGTTTCAAAAGCTTTCTACG 59.607 40.000 13.10 8.13 0.00 3.51
1716 1847 6.483687 GTCTTGTTTCAAAAGCTTTCTACGA 58.516 36.000 13.10 4.42 0.00 3.43
1717 1848 6.411203 GTCTTGTTTCAAAAGCTTTCTACGAC 59.589 38.462 13.10 8.63 0.00 4.34
1718 1849 5.804692 TGTTTCAAAAGCTTTCTACGACA 57.195 34.783 13.10 10.98 0.00 4.35
1719 1850 5.806286 TGTTTCAAAAGCTTTCTACGACAG 58.194 37.500 13.10 0.00 0.00 3.51
1720 1851 5.583061 TGTTTCAAAAGCTTTCTACGACAGA 59.417 36.000 13.10 0.00 0.00 3.41
1871 2053 9.170584 GTTTCAGAAAGAAGAAAAATAGTTCGG 57.829 33.333 0.00 0.00 37.57 4.30
1895 2078 7.358765 CGGCGATGAATATTTTCTCTTCTACAG 60.359 40.741 0.00 0.00 32.78 2.74
1930 2113 1.889829 CAAAAACATAGCCCCGGTTGA 59.110 47.619 0.00 0.00 0.00 3.18
1937 2121 1.061546 TAGCCCCGGTTGAAGAAAGT 58.938 50.000 0.00 0.00 0.00 2.66
1950 2136 2.175878 AGAAAGTGCAGAATGAGCGT 57.824 45.000 0.00 0.00 39.69 5.07
2081 2270 0.684479 TCGTGCTGGAGTAGAGGCAT 60.684 55.000 0.00 0.00 37.05 4.40
2084 2273 2.311463 GTGCTGGAGTAGAGGCATCTA 58.689 52.381 3.48 3.48 36.96 1.98
2096 2285 1.068250 GCATCTACTCGGGGTGCTC 59.932 63.158 0.00 0.00 33.25 4.26
2117 2306 4.116328 CAGAGGAGGCGCGACGAA 62.116 66.667 12.10 0.00 0.00 3.85
2122 2311 4.547905 GAGGCGCGACGAATCCGA 62.548 66.667 12.10 0.00 39.50 4.55
2189 2378 1.414181 AGTGGTGTTGTCTCAGTGGAG 59.586 52.381 0.00 0.00 42.80 3.86
2191 2380 0.106708 GGTGTTGTCTCAGTGGAGCA 59.893 55.000 0.00 0.00 41.13 4.26
2198 2387 2.089980 GTCTCAGTGGAGCATTGCAAT 58.910 47.619 11.91 5.99 41.13 3.56
2204 2393 3.947196 CAGTGGAGCATTGCAATAAGGTA 59.053 43.478 12.53 0.00 0.00 3.08
2278 2481 2.807392 GGTAAATCGGACGGTTGTTTCA 59.193 45.455 0.00 0.00 0.00 2.69
2286 2489 2.335011 GGTTGTTTCAGGCGGCAC 59.665 61.111 13.08 0.03 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.040132 TGCCACTTCACACAATTACATGAATAA 60.040 33.333 0.00 0.00 31.00 1.40
1 2 6.432472 TGCCACTTCACACAATTACATGAATA 59.568 34.615 0.00 0.00 31.00 1.75
2 3 5.243507 TGCCACTTCACACAATTACATGAAT 59.756 36.000 0.00 0.00 31.00 2.57
3 4 4.582240 TGCCACTTCACACAATTACATGAA 59.418 37.500 0.00 0.00 0.00 2.57
4 5 4.140536 TGCCACTTCACACAATTACATGA 58.859 39.130 0.00 0.00 0.00 3.07
5 6 4.502171 TGCCACTTCACACAATTACATG 57.498 40.909 0.00 0.00 0.00 3.21
6 7 5.726980 ATTGCCACTTCACACAATTACAT 57.273 34.783 0.00 0.00 28.54 2.29
7 8 5.163468 ACAATTGCCACTTCACACAATTACA 60.163 36.000 5.05 0.00 39.92 2.41
8 9 5.288804 ACAATTGCCACTTCACACAATTAC 58.711 37.500 5.05 0.00 39.92 1.89
9 10 5.528043 ACAATTGCCACTTCACACAATTA 57.472 34.783 5.05 0.00 39.92 1.40
10 11 4.405116 ACAATTGCCACTTCACACAATT 57.595 36.364 5.05 0.00 41.98 2.32
11 12 5.528043 TTACAATTGCCACTTCACACAAT 57.472 34.783 5.05 0.00 34.30 2.71
12 13 4.736168 GCTTACAATTGCCACTTCACACAA 60.736 41.667 5.05 0.00 0.00 3.33
13 14 3.243367 GCTTACAATTGCCACTTCACACA 60.243 43.478 5.05 0.00 0.00 3.72
14 15 3.308530 GCTTACAATTGCCACTTCACAC 58.691 45.455 5.05 0.00 0.00 3.82
15 16 3.641437 GCTTACAATTGCCACTTCACA 57.359 42.857 5.05 0.00 0.00 3.58
24 25 7.227512 AGAGATACATAGTTGGCTTACAATTGC 59.772 37.037 5.05 0.00 41.95 3.56
25 26 8.668510 AGAGATACATAGTTGGCTTACAATTG 57.331 34.615 3.24 3.24 41.95 2.32
26 27 9.686683 AAAGAGATACATAGTTGGCTTACAATT 57.313 29.630 0.00 0.00 41.95 2.32
27 28 9.686683 AAAAGAGATACATAGTTGGCTTACAAT 57.313 29.630 0.00 0.00 41.95 2.71
28 29 9.515226 AAAAAGAGATACATAGTTGGCTTACAA 57.485 29.630 0.00 0.00 36.54 2.41
29 30 9.162764 GAAAAAGAGATACATAGTTGGCTTACA 57.837 33.333 0.00 0.00 0.00 2.41
30 31 8.613482 GGAAAAAGAGATACATAGTTGGCTTAC 58.387 37.037 0.00 0.00 0.00 2.34
31 32 8.548877 AGGAAAAAGAGATACATAGTTGGCTTA 58.451 33.333 0.00 0.00 0.00 3.09
32 33 7.406104 AGGAAAAAGAGATACATAGTTGGCTT 58.594 34.615 0.00 0.00 0.00 4.35
33 34 6.963322 AGGAAAAAGAGATACATAGTTGGCT 58.037 36.000 0.00 0.00 0.00 4.75
34 35 7.631717 AAGGAAAAAGAGATACATAGTTGGC 57.368 36.000 0.00 0.00 0.00 4.52
53 54 9.693739 ACACAATCCATGTAATACATAAAGGAA 57.306 29.630 12.90 1.09 41.46 3.36
54 55 9.119418 CACACAATCCATGTAATACATAAAGGA 57.881 33.333 11.72 11.72 41.46 3.36
55 56 9.119418 TCACACAATCCATGTAATACATAAAGG 57.881 33.333 5.49 3.93 41.46 3.11
58 59 9.898152 TCTTCACACAATCCATGTAATACATAA 57.102 29.630 5.49 0.00 41.46 1.90
60 61 8.985315 ATCTTCACACAATCCATGTAATACAT 57.015 30.769 0.00 0.00 41.46 2.29
61 62 8.046107 TGATCTTCACACAATCCATGTAATACA 58.954 33.333 0.00 0.00 41.46 2.29
62 63 8.338259 GTGATCTTCACACAATCCATGTAATAC 58.662 37.037 2.85 0.00 46.22 1.89
63 64 8.437360 GTGATCTTCACACAATCCATGTAATA 57.563 34.615 2.85 0.00 46.22 0.98
64 65 7.325660 GTGATCTTCACACAATCCATGTAAT 57.674 36.000 2.85 0.00 46.22 1.89
65 66 6.741992 GTGATCTTCACACAATCCATGTAA 57.258 37.500 2.85 0.00 46.22 2.41
74 75 8.843377 TCGCAAGTAAGGTGATCTTCACACAA 62.843 42.308 9.63 0.00 43.70 3.33
75 76 7.467854 TCGCAAGTAAGGTGATCTTCACACA 62.468 44.000 9.63 0.00 43.70 3.72
76 77 5.091343 TCGCAAGTAAGGTGATCTTCACAC 61.091 45.833 9.63 0.00 43.70 3.82
77 78 3.006430 TCGCAAGTAAGGTGATCTTCACA 59.994 43.478 9.63 0.00 43.70 3.58
78 79 3.368236 GTCGCAAGTAAGGTGATCTTCAC 59.632 47.826 0.00 0.00 42.19 3.18
79 80 3.006430 TGTCGCAAGTAAGGTGATCTTCA 59.994 43.478 0.00 0.00 36.93 3.02
80 81 3.585862 TGTCGCAAGTAAGGTGATCTTC 58.414 45.455 0.00 0.00 36.93 2.87
81 82 3.678056 TGTCGCAAGTAAGGTGATCTT 57.322 42.857 0.00 0.00 39.40 2.40
82 83 3.895232 ATGTCGCAAGTAAGGTGATCT 57.105 42.857 0.00 0.00 39.48 2.75
83 84 3.485877 GCAATGTCGCAAGTAAGGTGATC 60.486 47.826 0.00 0.00 39.48 2.92
84 85 2.420022 GCAATGTCGCAAGTAAGGTGAT 59.580 45.455 0.00 0.00 39.48 3.06
85 86 1.804151 GCAATGTCGCAAGTAAGGTGA 59.196 47.619 0.00 0.00 39.48 4.02
86 87 1.806542 AGCAATGTCGCAAGTAAGGTG 59.193 47.619 0.00 0.00 39.48 4.00
87 88 2.185004 AGCAATGTCGCAAGTAAGGT 57.815 45.000 0.00 0.00 39.48 3.50
88 89 3.058293 TGAAAGCAATGTCGCAAGTAAGG 60.058 43.478 0.00 0.00 39.48 2.69
89 90 4.145876 TGAAAGCAATGTCGCAAGTAAG 57.854 40.909 0.00 0.00 39.48 2.34
90 91 4.560136 TTGAAAGCAATGTCGCAAGTAA 57.440 36.364 0.00 0.00 39.48 2.24
91 92 4.764679 ATTGAAAGCAATGTCGCAAGTA 57.235 36.364 0.00 0.00 42.91 2.24
92 93 3.648339 ATTGAAAGCAATGTCGCAAGT 57.352 38.095 0.00 0.00 42.91 3.16
101 102 4.223477 AGGCATAACCACATTGAAAGCAAT 59.777 37.500 0.00 0.00 42.85 3.56
102 103 3.577848 AGGCATAACCACATTGAAAGCAA 59.422 39.130 0.00 0.00 43.14 3.91
103 104 3.164268 AGGCATAACCACATTGAAAGCA 58.836 40.909 0.00 0.00 43.14 3.91
104 105 3.445096 AGAGGCATAACCACATTGAAAGC 59.555 43.478 0.00 0.00 43.14 3.51
105 106 6.375455 ACTTAGAGGCATAACCACATTGAAAG 59.625 38.462 0.00 0.00 43.14 2.62
106 107 6.245408 ACTTAGAGGCATAACCACATTGAAA 58.755 36.000 0.00 0.00 43.14 2.69
107 108 5.815581 ACTTAGAGGCATAACCACATTGAA 58.184 37.500 0.00 0.00 43.14 2.69
108 109 5.428253 GACTTAGAGGCATAACCACATTGA 58.572 41.667 0.00 0.00 43.14 2.57
109 110 4.271049 CGACTTAGAGGCATAACCACATTG 59.729 45.833 0.00 0.00 43.14 2.82
110 111 4.081087 ACGACTTAGAGGCATAACCACATT 60.081 41.667 0.00 0.00 43.14 2.71
111 112 3.451178 ACGACTTAGAGGCATAACCACAT 59.549 43.478 0.00 0.00 43.14 3.21
112 113 2.829720 ACGACTTAGAGGCATAACCACA 59.170 45.455 0.00 0.00 43.14 4.17
113 114 3.187700 CACGACTTAGAGGCATAACCAC 58.812 50.000 0.00 0.00 43.14 4.16
114 115 2.418197 GCACGACTTAGAGGCATAACCA 60.418 50.000 0.00 0.00 43.14 3.67
115 116 2.159085 AGCACGACTTAGAGGCATAACC 60.159 50.000 0.00 0.00 39.61 2.85
116 117 3.166489 AGCACGACTTAGAGGCATAAC 57.834 47.619 0.00 0.00 0.00 1.89
117 118 3.733988 CGAAGCACGACTTAGAGGCATAA 60.734 47.826 0.00 0.00 45.77 1.90
118 119 2.223502 CGAAGCACGACTTAGAGGCATA 60.224 50.000 0.00 0.00 45.77 3.14
119 120 1.469940 CGAAGCACGACTTAGAGGCAT 60.470 52.381 0.00 0.00 45.77 4.40
120 121 0.109272 CGAAGCACGACTTAGAGGCA 60.109 55.000 0.00 0.00 45.77 4.75
121 122 0.170561 TCGAAGCACGACTTAGAGGC 59.829 55.000 2.09 0.00 46.45 4.70
132 133 0.596600 TCTTCCACGTGTCGAAGCAC 60.597 55.000 22.42 0.00 36.29 4.40
133 134 0.317160 ATCTTCCACGTGTCGAAGCA 59.683 50.000 22.42 14.84 36.29 3.91
134 135 2.273370 TATCTTCCACGTGTCGAAGC 57.727 50.000 22.42 0.00 36.29 3.86
135 136 3.975670 GCTATATCTTCCACGTGTCGAAG 59.024 47.826 21.65 21.65 37.44 3.79
136 137 3.243301 GGCTATATCTTCCACGTGTCGAA 60.243 47.826 15.65 10.69 0.00 3.71
137 138 2.292569 GGCTATATCTTCCACGTGTCGA 59.707 50.000 15.65 7.92 0.00 4.20
138 139 2.034179 TGGCTATATCTTCCACGTGTCG 59.966 50.000 15.65 0.00 0.00 4.35
139 140 3.381949 GTGGCTATATCTTCCACGTGTC 58.618 50.000 15.65 0.00 40.54 3.67
140 141 3.454371 GTGGCTATATCTTCCACGTGT 57.546 47.619 15.65 0.00 40.54 4.49
145 146 3.511540 CCTCGATGTGGCTATATCTTCCA 59.488 47.826 5.32 0.00 0.00 3.53
146 147 3.118956 CCCTCGATGTGGCTATATCTTCC 60.119 52.174 5.32 0.00 0.00 3.46
147 148 3.677424 GCCCTCGATGTGGCTATATCTTC 60.677 52.174 12.15 0.00 44.46 2.87
148 149 2.234908 GCCCTCGATGTGGCTATATCTT 59.765 50.000 12.15 0.00 44.46 2.40
149 150 1.827969 GCCCTCGATGTGGCTATATCT 59.172 52.381 12.15 0.00 44.46 1.98
150 151 1.469940 CGCCCTCGATGTGGCTATATC 60.470 57.143 15.96 0.00 45.71 1.63
151 152 0.532573 CGCCCTCGATGTGGCTATAT 59.467 55.000 15.96 0.00 45.71 0.86
152 153 0.826256 ACGCCCTCGATGTGGCTATA 60.826 55.000 15.96 0.00 45.71 1.31
153 154 1.686325 AACGCCCTCGATGTGGCTAT 61.686 55.000 15.96 4.53 45.71 2.97
154 155 1.038681 TAACGCCCTCGATGTGGCTA 61.039 55.000 15.96 3.40 45.71 3.93
155 156 2.355986 TAACGCCCTCGATGTGGCT 61.356 57.895 15.96 4.20 45.71 4.75
156 157 2.171725 GTAACGCCCTCGATGTGGC 61.172 63.158 9.96 9.96 44.41 5.01
157 158 1.082117 GTGTAACGCCCTCGATGTGG 61.082 60.000 0.00 0.00 39.41 4.17
158 159 1.082117 GGTGTAACGCCCTCGATGTG 61.082 60.000 0.00 0.00 38.12 3.21
159 160 1.217244 GGTGTAACGCCCTCGATGT 59.783 57.895 0.00 0.00 38.12 3.06
160 161 0.806102 CTGGTGTAACGCCCTCGATG 60.806 60.000 0.00 0.00 38.12 3.84
161 162 1.255667 ACTGGTGTAACGCCCTCGAT 61.256 55.000 0.00 0.00 38.12 3.59
162 163 1.904865 ACTGGTGTAACGCCCTCGA 60.905 57.895 0.00 0.00 38.12 4.04
163 164 1.736645 CACTGGTGTAACGCCCTCG 60.737 63.158 0.00 0.00 38.12 4.63
164 165 0.250166 AACACTGGTGTAACGCCCTC 60.250 55.000 6.81 0.00 44.13 4.30
165 166 0.534203 CAACACTGGTGTAACGCCCT 60.534 55.000 6.81 0.00 44.13 5.19
166 167 0.816421 ACAACACTGGTGTAACGCCC 60.816 55.000 6.81 0.00 44.13 6.13
167 168 1.018910 AACAACACTGGTGTAACGCC 58.981 50.000 0.00 0.00 44.13 5.68
168 169 1.666700 TCAACAACACTGGTGTAACGC 59.333 47.619 0.00 0.00 44.13 4.84
169 170 4.343811 TTTCAACAACACTGGTGTAACG 57.656 40.909 0.00 2.25 44.13 3.18
201 202 7.506938 ACCTTAATTTGGTCTAGCATATTGCAT 59.493 33.333 1.93 0.00 38.58 3.96
202 203 6.833416 ACCTTAATTTGGTCTAGCATATTGCA 59.167 34.615 1.93 0.00 38.58 4.08
203 204 7.141363 CACCTTAATTTGGTCTAGCATATTGC 58.859 38.462 7.73 0.00 38.65 3.56
204 205 7.141363 GCACCTTAATTTGGTCTAGCATATTG 58.859 38.462 7.73 0.00 35.28 1.90
205 206 6.833416 TGCACCTTAATTTGGTCTAGCATATT 59.167 34.615 8.63 3.88 35.28 1.28
206 207 6.364701 TGCACCTTAATTTGGTCTAGCATAT 58.635 36.000 8.63 0.00 35.28 1.78
207 208 5.750524 TGCACCTTAATTTGGTCTAGCATA 58.249 37.500 8.63 0.00 35.28 3.14
208 209 4.599041 TGCACCTTAATTTGGTCTAGCAT 58.401 39.130 8.63 0.00 35.28 3.79
209 210 4.027674 TGCACCTTAATTTGGTCTAGCA 57.972 40.909 8.63 8.63 35.28 3.49
210 211 5.385509 TTTGCACCTTAATTTGGTCTAGC 57.614 39.130 0.00 3.09 35.28 3.42
211 212 9.921637 TTAAATTTGCACCTTAATTTGGTCTAG 57.078 29.630 14.31 0.00 35.41 2.43
213 214 9.791801 AATTAAATTTGCACCTTAATTTGGTCT 57.208 25.926 14.31 0.00 33.51 3.85
229 230 3.433615 TCGGCCCGCAAAAATTAAATTTG 59.566 39.130 0.00 10.98 40.04 2.32
230 231 3.665190 TCGGCCCGCAAAAATTAAATTT 58.335 36.364 0.00 0.00 0.00 1.82
231 232 3.056465 TCTCGGCCCGCAAAAATTAAATT 60.056 39.130 0.00 0.00 0.00 1.82
232 233 2.494073 TCTCGGCCCGCAAAAATTAAAT 59.506 40.909 0.00 0.00 0.00 1.40
233 234 1.887198 TCTCGGCCCGCAAAAATTAAA 59.113 42.857 0.00 0.00 0.00 1.52
234 235 1.470890 CTCTCGGCCCGCAAAAATTAA 59.529 47.619 0.00 0.00 0.00 1.40
235 236 1.091537 CTCTCGGCCCGCAAAAATTA 58.908 50.000 0.00 0.00 0.00 1.40
236 237 0.608035 TCTCTCGGCCCGCAAAAATT 60.608 50.000 0.00 0.00 0.00 1.82
237 238 0.608035 TTCTCTCGGCCCGCAAAAAT 60.608 50.000 0.00 0.00 0.00 1.82
238 239 0.820074 TTTCTCTCGGCCCGCAAAAA 60.820 50.000 0.00 0.00 0.00 1.94
239 240 0.608035 ATTTCTCTCGGCCCGCAAAA 60.608 50.000 0.00 0.00 0.00 2.44
240 241 0.608035 AATTTCTCTCGGCCCGCAAA 60.608 50.000 0.00 0.00 0.00 3.68
241 242 1.002624 AATTTCTCTCGGCCCGCAA 60.003 52.632 0.00 0.00 0.00 4.85
242 243 1.745115 CAATTTCTCTCGGCCCGCA 60.745 57.895 0.00 0.00 0.00 5.69
243 244 3.102097 CAATTTCTCTCGGCCCGC 58.898 61.111 0.00 0.00 0.00 6.13
244 245 2.813179 CGCAATTTCTCTCGGCCCG 61.813 63.158 0.00 0.00 0.00 6.13
245 246 3.102097 CGCAATTTCTCTCGGCCC 58.898 61.111 0.00 0.00 0.00 5.80
246 247 2.405191 GCGCAATTTCTCTCGGCC 59.595 61.111 0.30 0.00 0.00 6.13
247 248 1.718757 ATGGCGCAATTTCTCTCGGC 61.719 55.000 10.83 0.00 45.76 5.54
248 249 1.581934 TATGGCGCAATTTCTCTCGG 58.418 50.000 10.83 0.00 0.00 4.63
249 250 2.802247 TGATATGGCGCAATTTCTCTCG 59.198 45.455 15.11 0.00 0.00 4.04
250 251 4.060900 TCTGATATGGCGCAATTTCTCTC 58.939 43.478 15.11 1.53 0.00 3.20
251 252 3.812053 GTCTGATATGGCGCAATTTCTCT 59.188 43.478 15.11 0.00 0.00 3.10
252 253 3.561310 TGTCTGATATGGCGCAATTTCTC 59.439 43.478 15.11 5.90 0.00 2.87
253 254 3.313526 GTGTCTGATATGGCGCAATTTCT 59.686 43.478 15.11 0.00 0.00 2.52
254 255 3.065233 TGTGTCTGATATGGCGCAATTTC 59.935 43.478 10.83 9.26 0.00 2.17
255 256 3.016031 TGTGTCTGATATGGCGCAATTT 58.984 40.909 10.83 0.00 0.00 1.82
256 257 2.615447 CTGTGTCTGATATGGCGCAATT 59.385 45.455 10.83 0.00 0.00 2.32
257 258 2.216046 CTGTGTCTGATATGGCGCAAT 58.784 47.619 10.83 5.96 0.00 3.56
258 259 1.655484 CTGTGTCTGATATGGCGCAA 58.345 50.000 10.83 0.00 0.00 4.85
259 260 0.811219 GCTGTGTCTGATATGGCGCA 60.811 55.000 10.83 0.00 0.00 6.09
260 261 0.811219 TGCTGTGTCTGATATGGCGC 60.811 55.000 0.00 0.00 0.00 6.53
261 262 1.655484 TTGCTGTGTCTGATATGGCG 58.345 50.000 0.00 0.00 0.00 5.69
262 263 2.223433 GCTTTGCTGTGTCTGATATGGC 60.223 50.000 0.00 0.00 0.00 4.40
263 264 2.357009 GGCTTTGCTGTGTCTGATATGG 59.643 50.000 0.00 0.00 0.00 2.74
264 265 2.031314 CGGCTTTGCTGTGTCTGATATG 59.969 50.000 0.00 0.00 0.00 1.78
265 266 2.093500 TCGGCTTTGCTGTGTCTGATAT 60.093 45.455 0.00 0.00 36.18 1.63
266 267 1.275010 TCGGCTTTGCTGTGTCTGATA 59.725 47.619 0.00 0.00 36.18 2.15
267 268 0.035317 TCGGCTTTGCTGTGTCTGAT 59.965 50.000 0.00 0.00 36.18 2.90
268 269 0.880278 GTCGGCTTTGCTGTGTCTGA 60.880 55.000 0.00 0.00 36.18 3.27
269 270 1.571460 GTCGGCTTTGCTGTGTCTG 59.429 57.895 0.00 0.00 36.18 3.51
270 271 1.598130 GGTCGGCTTTGCTGTGTCT 60.598 57.895 0.00 0.00 36.18 3.41
271 272 2.617274 GGGTCGGCTTTGCTGTGTC 61.617 63.158 0.00 0.00 36.18 3.67
272 273 2.594592 GGGTCGGCTTTGCTGTGT 60.595 61.111 0.00 0.00 36.18 3.72
273 274 3.726517 CGGGTCGGCTTTGCTGTG 61.727 66.667 0.00 0.00 36.18 3.66
274 275 2.386064 TTACGGGTCGGCTTTGCTGT 62.386 55.000 0.00 0.00 36.18 4.40
275 276 1.231958 TTTACGGGTCGGCTTTGCTG 61.232 55.000 0.00 0.00 36.06 4.41
276 277 0.535553 TTTTACGGGTCGGCTTTGCT 60.536 50.000 0.00 0.00 0.00 3.91
277 278 0.311477 TTTTTACGGGTCGGCTTTGC 59.689 50.000 0.00 0.00 0.00 3.68
317 318 6.548321 ACCCCGCATAATGGATCTATAAAAA 58.452 36.000 0.00 0.00 0.00 1.94
318 319 6.012858 AGACCCCGCATAATGGATCTATAAAA 60.013 38.462 0.00 0.00 0.00 1.52
319 320 5.487488 AGACCCCGCATAATGGATCTATAAA 59.513 40.000 0.00 0.00 0.00 1.40
320 321 5.030147 AGACCCCGCATAATGGATCTATAA 58.970 41.667 0.00 0.00 0.00 0.98
321 322 4.405680 CAGACCCCGCATAATGGATCTATA 59.594 45.833 0.00 0.00 0.00 1.31
322 323 3.198635 CAGACCCCGCATAATGGATCTAT 59.801 47.826 0.00 0.00 0.00 1.98
323 324 2.567169 CAGACCCCGCATAATGGATCTA 59.433 50.000 0.00 0.00 0.00 1.98
324 325 1.349026 CAGACCCCGCATAATGGATCT 59.651 52.381 0.00 0.00 0.00 2.75
325 326 1.813513 CAGACCCCGCATAATGGATC 58.186 55.000 0.00 0.00 0.00 3.36
326 327 0.250901 GCAGACCCCGCATAATGGAT 60.251 55.000 0.00 0.00 0.00 3.41
327 328 1.148273 GCAGACCCCGCATAATGGA 59.852 57.895 0.00 0.00 0.00 3.41
328 329 0.751277 TTGCAGACCCCGCATAATGG 60.751 55.000 0.00 0.00 39.58 3.16
329 330 0.381801 GTTGCAGACCCCGCATAATG 59.618 55.000 0.00 0.00 39.58 1.90
330 331 0.255890 AGTTGCAGACCCCGCATAAT 59.744 50.000 0.00 0.00 39.58 1.28
331 332 0.906066 TAGTTGCAGACCCCGCATAA 59.094 50.000 0.00 0.00 39.58 1.90
332 333 0.177141 GTAGTTGCAGACCCCGCATA 59.823 55.000 0.00 0.00 39.58 3.14
333 334 1.078426 GTAGTTGCAGACCCCGCAT 60.078 57.895 0.00 0.00 39.58 4.73
334 335 2.345991 GTAGTTGCAGACCCCGCA 59.654 61.111 0.00 0.00 37.68 5.69
335 336 2.813908 CGTAGTTGCAGACCCCGC 60.814 66.667 0.00 0.00 0.00 6.13
336 337 2.125673 CCGTAGTTGCAGACCCCG 60.126 66.667 0.00 0.00 0.00 5.73
337 338 2.436115 GCCGTAGTTGCAGACCCC 60.436 66.667 0.00 0.00 0.00 4.95
338 339 2.345991 TGCCGTAGTTGCAGACCC 59.654 61.111 0.00 0.00 34.05 4.46
360 361 3.670377 GTCTTTGTGGGCCGGCAC 61.670 66.667 30.85 28.40 0.00 5.01
363 364 1.730451 AAAACGTCTTTGTGGGCCGG 61.730 55.000 0.00 0.00 0.00 6.13
364 365 0.101579 AAAAACGTCTTTGTGGGCCG 59.898 50.000 0.00 0.00 0.00 6.13
365 366 1.537348 GGAAAAACGTCTTTGTGGGCC 60.537 52.381 0.00 0.00 0.00 5.80
366 367 1.847818 GGAAAAACGTCTTTGTGGGC 58.152 50.000 0.00 0.00 0.00 5.36
367 368 1.862411 GCGGAAAAACGTCTTTGTGGG 60.862 52.381 0.00 0.00 35.98 4.61
368 369 1.472990 GCGGAAAAACGTCTTTGTGG 58.527 50.000 0.00 0.00 35.98 4.17
369 370 1.109296 CGCGGAAAAACGTCTTTGTG 58.891 50.000 0.00 0.00 35.98 3.33
370 371 1.008329 TCGCGGAAAAACGTCTTTGT 58.992 45.000 6.13 0.00 35.98 2.83
371 372 1.771291 GTTCGCGGAAAAACGTCTTTG 59.229 47.619 6.13 0.00 35.98 2.77
372 373 1.667212 AGTTCGCGGAAAAACGTCTTT 59.333 42.857 6.13 0.00 35.98 2.52
373 374 1.004292 CAGTTCGCGGAAAAACGTCTT 60.004 47.619 6.13 0.00 35.98 3.01
374 375 0.580104 CAGTTCGCGGAAAAACGTCT 59.420 50.000 6.13 0.00 35.98 4.18
375 376 0.990295 GCAGTTCGCGGAAAAACGTC 60.990 55.000 6.13 0.00 35.98 4.34
376 377 1.010462 GCAGTTCGCGGAAAAACGT 60.010 52.632 6.13 0.00 35.98 3.99
377 378 0.590230 TTGCAGTTCGCGGAAAAACG 60.590 50.000 6.13 1.38 46.97 3.60
378 379 1.254313 GTTTGCAGTTCGCGGAAAAAC 59.746 47.619 6.13 2.77 46.97 2.43
379 380 1.135373 TGTTTGCAGTTCGCGGAAAAA 60.135 42.857 6.13 0.00 46.97 1.94
380 381 0.452184 TGTTTGCAGTTCGCGGAAAA 59.548 45.000 6.13 0.00 46.97 2.29
381 382 0.248296 GTGTTTGCAGTTCGCGGAAA 60.248 50.000 6.13 0.00 46.97 3.13
382 383 1.353804 GTGTTTGCAGTTCGCGGAA 59.646 52.632 6.13 0.00 46.97 4.30
383 384 1.163420 ATGTGTTTGCAGTTCGCGGA 61.163 50.000 6.13 0.00 46.97 5.54
384 385 0.317770 AATGTGTTTGCAGTTCGCGG 60.318 50.000 6.13 0.00 46.97 6.46
385 386 1.476074 AAATGTGTTTGCAGTTCGCG 58.524 45.000 0.00 0.00 46.97 5.87
386 387 3.223186 CAAAATGTGTTTGCAGTTCGC 57.777 42.857 0.00 0.00 42.89 4.70
394 395 1.555741 CGGCCCGCAAAATGTGTTTG 61.556 55.000 0.00 0.00 0.00 2.93
395 396 1.300542 CGGCCCGCAAAATGTGTTT 60.301 52.632 0.00 0.00 0.00 2.83
396 397 1.739338 TTCGGCCCGCAAAATGTGTT 61.739 50.000 0.00 0.00 0.00 3.32
397 398 1.739338 TTTCGGCCCGCAAAATGTGT 61.739 50.000 0.00 0.00 0.00 3.72
398 399 1.006805 TTTCGGCCCGCAAAATGTG 60.007 52.632 0.00 0.00 0.00 3.21
399 400 1.288752 CTTTCGGCCCGCAAAATGT 59.711 52.632 0.00 0.00 0.00 2.71
400 401 1.445926 CCTTTCGGCCCGCAAAATG 60.446 57.895 0.00 0.00 0.00 2.32
401 402 1.182385 TTCCTTTCGGCCCGCAAAAT 61.182 50.000 0.00 0.00 0.00 1.82
402 403 1.801309 CTTCCTTTCGGCCCGCAAAA 61.801 55.000 0.00 0.00 0.00 2.44
403 404 2.203365 TTCCTTTCGGCCCGCAAA 60.203 55.556 0.00 0.00 0.00 3.68
404 405 2.671619 CTTCCTTTCGGCCCGCAA 60.672 61.111 0.00 0.00 0.00 4.85
410 411 4.717313 ACCCCGCTTCCTTTCGGC 62.717 66.667 0.00 0.00 44.01 5.54
411 412 2.436115 GACCCCGCTTCCTTTCGG 60.436 66.667 0.00 0.00 44.89 4.30
412 413 1.741770 CAGACCCCGCTTCCTTTCG 60.742 63.158 0.00 0.00 0.00 3.46
413 414 2.041115 GCAGACCCCGCTTCCTTTC 61.041 63.158 0.00 0.00 0.00 2.62
414 415 1.198759 TAGCAGACCCCGCTTCCTTT 61.199 55.000 0.00 0.00 40.96 3.11
415 416 1.612442 TAGCAGACCCCGCTTCCTT 60.612 57.895 0.00 0.00 40.96 3.36
416 417 2.038975 TAGCAGACCCCGCTTCCT 59.961 61.111 0.00 0.00 40.96 3.36
417 418 2.022240 CTCTAGCAGACCCCGCTTCC 62.022 65.000 0.00 0.00 40.96 3.46
418 419 1.324005 ACTCTAGCAGACCCCGCTTC 61.324 60.000 0.00 0.00 40.96 3.86
419 420 0.905337 AACTCTAGCAGACCCCGCTT 60.905 55.000 0.00 0.00 40.96 4.68
420 421 1.305381 AACTCTAGCAGACCCCGCT 60.305 57.895 0.00 0.00 43.62 5.52
421 422 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
422 423 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
423 424 1.222113 GGCAACTCTAGCAGACCCC 59.778 63.158 0.00 0.00 0.00 4.95
424 425 1.222113 GGGCAACTCTAGCAGACCC 59.778 63.158 0.00 0.00 0.00 4.46
425 426 0.176910 GAGGGCAACTCTAGCAGACC 59.823 60.000 0.79 0.00 43.14 3.85
426 427 0.898320 TGAGGGCAACTCTAGCAGAC 59.102 55.000 8.81 0.00 46.72 3.51
427 428 1.189752 CTGAGGGCAACTCTAGCAGA 58.810 55.000 8.81 0.00 46.72 4.26
428 429 1.189752 TCTGAGGGCAACTCTAGCAG 58.810 55.000 8.81 0.00 46.72 4.24
429 430 1.276421 GTTCTGAGGGCAACTCTAGCA 59.724 52.381 8.81 0.00 46.72 3.49
430 431 1.406205 GGTTCTGAGGGCAACTCTAGC 60.406 57.143 8.81 0.00 46.72 3.42
431 432 1.902508 TGGTTCTGAGGGCAACTCTAG 59.097 52.381 8.81 5.41 46.72 2.43
432 433 2.024176 TGGTTCTGAGGGCAACTCTA 57.976 50.000 8.81 0.00 46.72 2.43
433 434 1.072965 CTTGGTTCTGAGGGCAACTCT 59.927 52.381 8.81 0.00 46.72 3.24
434 435 1.528129 CTTGGTTCTGAGGGCAACTC 58.472 55.000 1.02 1.02 46.78 3.01
435 436 0.538287 GCTTGGTTCTGAGGGCAACT 60.538 55.000 0.00 0.00 0.00 3.16
436 437 1.527433 GGCTTGGTTCTGAGGGCAAC 61.527 60.000 0.00 0.00 0.00 4.17
437 438 1.228552 GGCTTGGTTCTGAGGGCAA 60.229 57.895 0.00 0.00 0.00 4.52
438 439 2.436109 GGCTTGGTTCTGAGGGCA 59.564 61.111 0.00 0.00 0.00 5.36
439 440 2.361737 GGGCTTGGTTCTGAGGGC 60.362 66.667 0.00 0.00 0.00 5.19
440 441 0.895559 GTTGGGCTTGGTTCTGAGGG 60.896 60.000 0.00 0.00 0.00 4.30
441 442 0.111253 AGTTGGGCTTGGTTCTGAGG 59.889 55.000 0.00 0.00 0.00 3.86
442 443 1.202806 TGAGTTGGGCTTGGTTCTGAG 60.203 52.381 0.00 0.00 0.00 3.35
452 453 2.282745 GCTTGGCTGAGTTGGGCT 60.283 61.111 0.00 0.00 0.00 5.19
526 528 6.477688 AGTTGATGCTTGAAGACAAAAACATG 59.522 34.615 0.00 0.00 35.49 3.21
571 573 4.392138 GTGCTATTACCAGAGTGTTTGACC 59.608 45.833 0.00 0.00 0.00 4.02
572 574 5.120830 CAGTGCTATTACCAGAGTGTTTGAC 59.879 44.000 0.00 0.00 0.00 3.18
573 575 5.237815 CAGTGCTATTACCAGAGTGTTTGA 58.762 41.667 0.00 0.00 0.00 2.69
574 576 4.142816 GCAGTGCTATTACCAGAGTGTTTG 60.143 45.833 8.18 0.00 0.00 2.93
575 577 4.003648 GCAGTGCTATTACCAGAGTGTTT 58.996 43.478 8.18 0.00 0.00 2.83
576 578 3.261897 AGCAGTGCTATTACCAGAGTGTT 59.738 43.478 18.11 0.00 36.99 3.32
577 579 2.834549 AGCAGTGCTATTACCAGAGTGT 59.165 45.455 18.11 0.00 36.99 3.55
578 580 3.533606 AGCAGTGCTATTACCAGAGTG 57.466 47.619 18.11 0.00 36.99 3.51
579 581 4.141914 GGTTAGCAGTGCTATTACCAGAGT 60.142 45.833 29.35 5.87 40.07 3.24
580 582 4.100189 AGGTTAGCAGTGCTATTACCAGAG 59.900 45.833 32.92 0.00 41.73 3.35
581 583 4.030913 AGGTTAGCAGTGCTATTACCAGA 58.969 43.478 32.92 15.12 41.73 3.86
582 584 4.100189 AGAGGTTAGCAGTGCTATTACCAG 59.900 45.833 32.92 0.00 41.73 4.00
583 585 4.030913 AGAGGTTAGCAGTGCTATTACCA 58.969 43.478 32.92 16.34 41.73 3.25
584 586 4.372656 CAGAGGTTAGCAGTGCTATTACC 58.627 47.826 28.00 28.00 41.01 2.85
585 587 3.804873 GCAGAGGTTAGCAGTGCTATTAC 59.195 47.826 24.99 19.84 41.01 1.89
586 588 3.706594 AGCAGAGGTTAGCAGTGCTATTA 59.293 43.478 24.99 9.07 42.63 0.98
587 589 2.503356 AGCAGAGGTTAGCAGTGCTATT 59.497 45.455 24.99 13.83 42.63 1.73
588 590 2.102252 GAGCAGAGGTTAGCAGTGCTAT 59.898 50.000 24.99 11.05 44.42 2.97
589 591 1.478510 GAGCAGAGGTTAGCAGTGCTA 59.521 52.381 21.00 21.00 44.42 3.49
590 592 2.370718 AGCAGAGGTTAGCAGTGCT 58.629 52.632 23.44 23.44 43.41 4.40
591 593 0.742635 GGAGCAGAGGTTAGCAGTGC 60.743 60.000 7.13 7.13 0.00 4.40
592 594 0.610174 TGGAGCAGAGGTTAGCAGTG 59.390 55.000 0.00 0.00 0.00 3.66
593 595 0.901124 CTGGAGCAGAGGTTAGCAGT 59.099 55.000 0.00 0.00 32.44 4.40
594 596 0.461693 GCTGGAGCAGAGGTTAGCAG 60.462 60.000 0.00 0.00 41.59 4.24
595 597 1.599047 GCTGGAGCAGAGGTTAGCA 59.401 57.895 0.00 0.00 41.59 3.49
596 598 4.530581 GCTGGAGCAGAGGTTAGC 57.469 61.111 0.00 0.00 41.59 3.09
606 608 2.513435 GGCTAGCAGTGCTGGAGC 60.513 66.667 30.43 27.73 39.54 4.70
607 609 2.202851 CGGCTAGCAGTGCTGGAG 60.203 66.667 30.43 20.13 39.54 3.86
618 620 0.380733 TACGAGATGTGTGCGGCTAG 59.619 55.000 0.00 0.00 0.00 3.42
619 621 0.812549 TTACGAGATGTGTGCGGCTA 59.187 50.000 0.00 0.00 0.00 3.93
620 622 0.037697 TTTACGAGATGTGTGCGGCT 60.038 50.000 0.00 0.00 0.00 5.52
621 623 0.793861 TTTTACGAGATGTGTGCGGC 59.206 50.000 0.00 0.00 0.00 6.53
622 624 3.245284 CCTATTTTACGAGATGTGTGCGG 59.755 47.826 0.00 0.00 0.00 5.69
623 625 4.109766 TCCTATTTTACGAGATGTGTGCG 58.890 43.478 0.00 0.00 0.00 5.34
624 626 5.500290 CGTTCCTATTTTACGAGATGTGTGC 60.500 44.000 0.00 0.00 37.47 4.57
625 627 5.005394 CCGTTCCTATTTTACGAGATGTGTG 59.995 44.000 0.00 0.00 37.47 3.82
626 628 5.107133 CCGTTCCTATTTTACGAGATGTGT 58.893 41.667 0.00 0.00 37.47 3.72
627 629 5.107133 ACCGTTCCTATTTTACGAGATGTG 58.893 41.667 0.00 0.00 37.47 3.21
628 630 5.334724 ACCGTTCCTATTTTACGAGATGT 57.665 39.130 0.00 0.00 37.47 3.06
629 631 5.808540 TCAACCGTTCCTATTTTACGAGATG 59.191 40.000 0.00 0.00 37.47 2.90
630 632 5.969423 TCAACCGTTCCTATTTTACGAGAT 58.031 37.500 0.00 0.00 37.47 2.75
631 633 5.183713 TCTCAACCGTTCCTATTTTACGAGA 59.816 40.000 0.00 0.00 37.47 4.04
632 634 5.404946 TCTCAACCGTTCCTATTTTACGAG 58.595 41.667 0.00 0.00 37.47 4.18
633 635 5.389859 TCTCAACCGTTCCTATTTTACGA 57.610 39.130 0.00 0.00 37.47 3.43
634 636 7.760131 TTATCTCAACCGTTCCTATTTTACG 57.240 36.000 0.00 0.00 35.20 3.18
635 637 8.557029 CCATTATCTCAACCGTTCCTATTTTAC 58.443 37.037 0.00 0.00 0.00 2.01
636 638 8.487848 TCCATTATCTCAACCGTTCCTATTTTA 58.512 33.333 0.00 0.00 0.00 1.52
637 639 7.282450 GTCCATTATCTCAACCGTTCCTATTTT 59.718 37.037 0.00 0.00 0.00 1.82
638 640 6.766467 GTCCATTATCTCAACCGTTCCTATTT 59.234 38.462 0.00 0.00 0.00 1.40
639 641 6.126883 TGTCCATTATCTCAACCGTTCCTATT 60.127 38.462 0.00 0.00 0.00 1.73
640 642 5.365605 TGTCCATTATCTCAACCGTTCCTAT 59.634 40.000 0.00 0.00 0.00 2.57
641 643 4.712829 TGTCCATTATCTCAACCGTTCCTA 59.287 41.667 0.00 0.00 0.00 2.94
642 644 3.517901 TGTCCATTATCTCAACCGTTCCT 59.482 43.478 0.00 0.00 0.00 3.36
643 645 3.621715 GTGTCCATTATCTCAACCGTTCC 59.378 47.826 0.00 0.00 0.00 3.62
644 646 3.621715 GGTGTCCATTATCTCAACCGTTC 59.378 47.826 0.00 0.00 0.00 3.95
645 647 3.008594 TGGTGTCCATTATCTCAACCGTT 59.991 43.478 0.00 0.00 0.00 4.44
646 648 2.569853 TGGTGTCCATTATCTCAACCGT 59.430 45.455 0.00 0.00 0.00 4.83
647 649 3.260475 TGGTGTCCATTATCTCAACCG 57.740 47.619 0.00 0.00 0.00 4.44
648 650 4.526970 ACATGGTGTCCATTATCTCAACC 58.473 43.478 0.00 0.00 42.23 3.77
649 651 5.237344 GCTACATGGTGTCCATTATCTCAAC 59.763 44.000 0.00 0.00 42.23 3.18
650 652 5.130975 AGCTACATGGTGTCCATTATCTCAA 59.869 40.000 0.00 0.00 42.23 3.02
651 653 4.655649 AGCTACATGGTGTCCATTATCTCA 59.344 41.667 0.00 0.00 42.23 3.27
652 654 5.220710 AGCTACATGGTGTCCATTATCTC 57.779 43.478 0.00 0.00 42.23 2.75
653 655 4.262207 CGAGCTACATGGTGTCCATTATCT 60.262 45.833 0.00 0.00 42.23 1.98
654 656 3.990469 CGAGCTACATGGTGTCCATTATC 59.010 47.826 0.00 0.00 42.23 1.75
655 657 3.388024 ACGAGCTACATGGTGTCCATTAT 59.612 43.478 0.00 0.00 42.23 1.28
656 658 2.764010 ACGAGCTACATGGTGTCCATTA 59.236 45.455 0.00 0.00 42.23 1.90
657 659 1.555075 ACGAGCTACATGGTGTCCATT 59.445 47.619 0.00 0.00 42.23 3.16
658 660 1.137086 GACGAGCTACATGGTGTCCAT 59.863 52.381 0.00 0.00 46.37 3.41
659 661 0.530744 GACGAGCTACATGGTGTCCA 59.469 55.000 0.00 0.00 38.19 4.02
660 662 0.179108 GGACGAGCTACATGGTGTCC 60.179 60.000 0.00 1.29 37.28 4.02
661 663 0.818296 AGGACGAGCTACATGGTGTC 59.182 55.000 0.00 0.00 0.00 3.67
662 664 1.749634 GTAGGACGAGCTACATGGTGT 59.250 52.381 0.00 0.00 0.00 4.16
663 665 1.749063 TGTAGGACGAGCTACATGGTG 59.251 52.381 0.00 0.00 31.91 4.17
664 666 2.139323 TGTAGGACGAGCTACATGGT 57.861 50.000 0.00 0.00 31.91 3.55
665 667 3.384668 CAATGTAGGACGAGCTACATGG 58.615 50.000 0.00 0.00 43.48 3.66
666 668 2.797156 GCAATGTAGGACGAGCTACATG 59.203 50.000 0.00 0.00 43.48 3.21
667 669 2.430694 TGCAATGTAGGACGAGCTACAT 59.569 45.455 0.00 0.00 45.41 2.29
668 670 1.822371 TGCAATGTAGGACGAGCTACA 59.178 47.619 0.00 0.00 39.89 2.74
669 671 2.579207 TGCAATGTAGGACGAGCTAC 57.421 50.000 0.00 0.00 0.00 3.58
670 672 2.496070 AGTTGCAATGTAGGACGAGCTA 59.504 45.455 0.59 0.00 0.00 3.32
671 673 1.276421 AGTTGCAATGTAGGACGAGCT 59.724 47.619 0.59 0.00 0.00 4.09
672 674 1.726853 AGTTGCAATGTAGGACGAGC 58.273 50.000 0.59 0.00 0.00 5.03
673 675 3.125316 GGAAAGTTGCAATGTAGGACGAG 59.875 47.826 0.59 0.00 0.00 4.18
674 676 3.071479 GGAAAGTTGCAATGTAGGACGA 58.929 45.455 0.59 0.00 0.00 4.20
675 677 2.159707 CGGAAAGTTGCAATGTAGGACG 60.160 50.000 0.59 0.00 0.00 4.79
676 678 2.161609 CCGGAAAGTTGCAATGTAGGAC 59.838 50.000 0.59 0.00 0.00 3.85
677 679 2.224670 ACCGGAAAGTTGCAATGTAGGA 60.225 45.455 9.46 0.00 0.00 2.94
678 680 2.095263 CACCGGAAAGTTGCAATGTAGG 60.095 50.000 9.46 4.80 0.00 3.18
679 681 2.552315 ACACCGGAAAGTTGCAATGTAG 59.448 45.455 9.46 0.00 0.00 2.74
680 682 2.292016 CACACCGGAAAGTTGCAATGTA 59.708 45.455 9.46 0.00 0.00 2.29
681 683 1.066908 CACACCGGAAAGTTGCAATGT 59.933 47.619 9.46 0.00 0.00 2.71
682 684 1.066908 ACACACCGGAAAGTTGCAATG 59.933 47.619 9.46 0.00 0.00 2.82
683 685 1.066908 CACACACCGGAAAGTTGCAAT 59.933 47.619 9.46 0.00 0.00 3.56
684 686 0.453793 CACACACCGGAAAGTTGCAA 59.546 50.000 9.46 0.00 0.00 4.08
685 687 0.393132 TCACACACCGGAAAGTTGCA 60.393 50.000 9.46 0.00 0.00 4.08
686 688 0.736053 TTCACACACCGGAAAGTTGC 59.264 50.000 9.46 0.00 0.00 4.17
687 689 3.371168 CAATTCACACACCGGAAAGTTG 58.629 45.455 9.46 0.00 0.00 3.16
688 690 2.223711 GCAATTCACACACCGGAAAGTT 60.224 45.455 9.46 0.00 0.00 2.66
689 691 1.336755 GCAATTCACACACCGGAAAGT 59.663 47.619 9.46 0.00 0.00 2.66
690 692 1.336440 TGCAATTCACACACCGGAAAG 59.664 47.619 9.46 0.00 0.00 2.62
691 693 1.336440 CTGCAATTCACACACCGGAAA 59.664 47.619 9.46 0.00 0.00 3.13
692 694 0.950836 CTGCAATTCACACACCGGAA 59.049 50.000 9.46 0.00 0.00 4.30
693 695 1.514678 GCTGCAATTCACACACCGGA 61.515 55.000 9.46 0.00 0.00 5.14
694 696 1.081242 GCTGCAATTCACACACCGG 60.081 57.895 0.00 0.00 0.00 5.28
695 697 0.386352 CAGCTGCAATTCACACACCG 60.386 55.000 0.00 0.00 0.00 4.94
752 754 9.877178 GATCCTGTATTGATTTTCGTATATCCT 57.123 33.333 0.00 0.00 0.00 3.24
753 755 9.877178 AGATCCTGTATTGATTTTCGTATATCC 57.123 33.333 0.00 0.00 0.00 2.59
756 758 9.836076 CGTAGATCCTGTATTGATTTTCGTATA 57.164 33.333 0.00 0.00 0.00 1.47
757 759 8.573885 TCGTAGATCCTGTATTGATTTTCGTAT 58.426 33.333 0.00 0.00 0.00 3.06
887 1013 9.710900 GGGAAAACAAAATCACAGAATTATTCT 57.289 29.630 0.99 0.99 41.70 2.40
953 1080 3.021695 CCTTCCTGTGTCGATGGTACTA 58.978 50.000 0.00 0.00 0.00 1.82
954 1081 1.825474 CCTTCCTGTGTCGATGGTACT 59.175 52.381 0.00 0.00 0.00 2.73
955 1082 1.822990 TCCTTCCTGTGTCGATGGTAC 59.177 52.381 0.00 0.00 0.00 3.34
992 1119 0.249657 GGTAGGAGCCATGAGAAGCG 60.250 60.000 0.00 0.00 0.00 4.68
994 1121 2.114616 ACTGGTAGGAGCCATGAGAAG 58.885 52.381 0.00 0.00 37.96 2.85
1032 1159 1.483595 CCAGGAGAGCCACCAGACAA 61.484 60.000 0.00 0.00 36.29 3.18
1096 1223 5.998981 CGCTAGAGAGAAACTAATAGGAGGA 59.001 44.000 0.00 0.00 0.00 3.71
1205 1332 1.810030 GGCTTTCTCGGGTACGCAG 60.810 63.158 10.84 6.85 40.69 5.18
1227 1354 1.298014 GAAGTCCTGCTGGGGTCTG 59.702 63.158 10.07 0.00 35.33 3.51
1247 1374 1.369091 CCTTGCACACATAGTCGCCC 61.369 60.000 0.00 0.00 0.00 6.13
1352 1479 6.806249 CGTTCCAGCACATAACAAAACATATT 59.194 34.615 0.00 0.00 0.00 1.28
1382 1509 1.376543 TAAGTCTCCCTCACTACGCG 58.623 55.000 3.53 3.53 0.00 6.01
1527 1654 2.858768 TGATTGGAGGGCTAGGGAAAAT 59.141 45.455 0.00 0.00 0.00 1.82
1565 1692 0.830648 TCAGCCGGATGAAGGTTAGG 59.169 55.000 22.36 0.00 0.00 2.69
1576 1703 2.358615 GTGTGTGCATCAGCCGGA 60.359 61.111 5.05 0.00 41.13 5.14
1608 1735 7.877904 GATCAAAATCAATCTGACGGCTACGT 61.878 42.308 0.00 0.00 43.13 3.57
1619 1746 1.334869 GCGCCCGATCAAAATCAATCT 59.665 47.619 0.00 0.00 31.76 2.40
1693 1824 6.092944 TGTCGTAGAAAGCTTTTGAAACAAGA 59.907 34.615 14.05 3.07 39.69 3.02
1694 1825 6.255215 TGTCGTAGAAAGCTTTTGAAACAAG 58.745 36.000 14.05 0.77 39.69 3.16
1695 1826 6.092944 TCTGTCGTAGAAAGCTTTTGAAACAA 59.907 34.615 14.05 0.00 42.83 2.83
1696 1827 5.583061 TCTGTCGTAGAAAGCTTTTGAAACA 59.417 36.000 14.05 12.73 42.83 2.83
1697 1828 6.018994 TCTCTGTCGTAGAAAGCTTTTGAAAC 60.019 38.462 14.05 9.03 42.83 2.78
1698 1829 6.046593 TCTCTGTCGTAGAAAGCTTTTGAAA 58.953 36.000 14.05 4.07 42.83 2.69
1699 1830 5.597806 TCTCTGTCGTAGAAAGCTTTTGAA 58.402 37.500 14.05 0.00 42.83 2.69
1700 1831 5.196341 TCTCTGTCGTAGAAAGCTTTTGA 57.804 39.130 14.05 6.71 42.83 2.69
1701 1832 5.866633 AGATCTCTGTCGTAGAAAGCTTTTG 59.133 40.000 14.05 4.38 42.83 2.44
1702 1833 6.031751 AGATCTCTGTCGTAGAAAGCTTTT 57.968 37.500 14.05 6.16 42.83 2.27
1703 1834 5.652994 AGATCTCTGTCGTAGAAAGCTTT 57.347 39.130 12.53 12.53 42.83 3.51
1704 1835 5.047660 ACAAGATCTCTGTCGTAGAAAGCTT 60.048 40.000 0.00 0.00 42.83 3.74
1705 1836 4.461081 ACAAGATCTCTGTCGTAGAAAGCT 59.539 41.667 0.00 0.00 42.83 3.74
1706 1837 4.739195 ACAAGATCTCTGTCGTAGAAAGC 58.261 43.478 0.00 0.00 42.83 3.51
1707 1838 6.863645 TGAAACAAGATCTCTGTCGTAGAAAG 59.136 38.462 0.00 0.00 44.97 2.62
1708 1839 6.745116 TGAAACAAGATCTCTGTCGTAGAAA 58.255 36.000 0.00 0.00 39.69 2.52
1709 1840 6.327279 TGAAACAAGATCTCTGTCGTAGAA 57.673 37.500 0.00 0.00 39.69 2.10
1710 1841 5.959618 TGAAACAAGATCTCTGTCGTAGA 57.040 39.130 0.00 0.00 0.00 2.59
1711 1842 7.408132 TTTTGAAACAAGATCTCTGTCGTAG 57.592 36.000 0.00 0.00 0.00 3.51
1712 1843 6.073765 GCTTTTGAAACAAGATCTCTGTCGTA 60.074 38.462 0.00 0.00 0.00 3.43
1713 1844 5.277538 GCTTTTGAAACAAGATCTCTGTCGT 60.278 40.000 0.00 0.00 0.00 4.34
1714 1845 5.049818 AGCTTTTGAAACAAGATCTCTGTCG 60.050 40.000 0.00 0.00 0.00 4.35
1715 1846 6.311055 AGCTTTTGAAACAAGATCTCTGTC 57.689 37.500 0.00 0.00 0.00 3.51
1716 1847 6.705863 AAGCTTTTGAAACAAGATCTCTGT 57.294 33.333 0.00 0.00 0.00 3.41
1717 1848 7.378995 CAGAAAGCTTTTGAAACAAGATCTCTG 59.621 37.037 14.05 6.87 0.00 3.35
1718 1849 7.424001 CAGAAAGCTTTTGAAACAAGATCTCT 58.576 34.615 14.05 0.00 0.00 3.10
1719 1850 6.143598 GCAGAAAGCTTTTGAAACAAGATCTC 59.856 38.462 14.05 0.00 41.15 2.75
1720 1851 5.981915 GCAGAAAGCTTTTGAAACAAGATCT 59.018 36.000 14.05 0.00 41.15 2.75
1865 2028 5.360591 AGAGAAAATATTCATCGCCGAACT 58.639 37.500 0.00 0.00 38.06 3.01
1871 2053 7.042456 TGCTGTAGAAGAGAAAATATTCATCGC 60.042 37.037 0.00 0.00 38.06 4.58
1895 2078 6.859420 ATGTTTTTGAAACAATACCCTTGC 57.141 33.333 9.93 0.00 33.42 4.01
1930 2113 2.481952 GACGCTCATTCTGCACTTTCTT 59.518 45.455 0.00 0.00 0.00 2.52
2008 2196 1.701704 CGATTTCTGCAACCAAAGCC 58.298 50.000 0.00 0.00 0.00 4.35
2081 2270 1.303888 AACGAGCACCCCGAGTAGA 60.304 57.895 0.00 0.00 0.00 2.59
2084 2273 2.915659 TGAACGAGCACCCCGAGT 60.916 61.111 0.00 0.00 0.00 4.18
2096 2285 4.116328 TCGCGCCTCCTCTGAACG 62.116 66.667 0.00 0.00 0.00 3.95
2189 2378 5.708948 TCAACAAGTACCTTATTGCAATGC 58.291 37.500 22.27 0.00 29.17 3.56
2191 2380 5.391950 CGCTCAACAAGTACCTTATTGCAAT 60.392 40.000 17.56 17.56 29.17 3.56
2198 2387 2.823924 TGCGCTCAACAAGTACCTTA 57.176 45.000 9.73 0.00 0.00 2.69
2312 2515 2.993899 CTGCCGGGTGATAAATCGATAC 59.006 50.000 2.18 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.