Multiple sequence alignment - TraesCS6A01G109100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G109100 chr6A 100.000 7749 0 0 1 7749 77797080 77789332 0.000000e+00 14310.0
1 TraesCS6A01G109100 chr6B 94.756 6045 197 63 856 6826 135128579 135122581 0.000000e+00 9297.0
2 TraesCS6A01G109100 chr6B 97.510 241 6 0 515 755 142811710 142811470 5.600000e-111 412.0
3 TraesCS6A01G109100 chr6B 82.245 383 52 9 1 381 135128994 135128626 4.510000e-82 316.0
4 TraesCS6A01G109100 chr6B 88.000 125 10 4 1658 1781 377824213 377824093 8.110000e-30 143.0
5 TraesCS6A01G109100 chr6B 85.385 130 15 3 1648 1776 708785300 708785426 1.750000e-26 132.0
6 TraesCS6A01G109100 chr6D 97.556 5196 73 21 1775 6936 61150561 61145386 0.000000e+00 8842.0
7 TraesCS6A01G109100 chr6D 92.260 801 25 20 773 1558 61151382 61150604 0.000000e+00 1101.0
8 TraesCS6A01G109100 chr6D 92.857 350 16 7 7308 7650 61144882 61144535 4.170000e-137 499.0
9 TraesCS6A01G109100 chr6D 86.061 330 13 10 6935 7234 61145304 61144978 2.700000e-84 324.0
10 TraesCS6A01G109100 chr5D 97.510 241 6 0 515 755 301303220 301303460 5.600000e-111 412.0
11 TraesCS6A01G109100 chr5D 91.837 196 8 4 7555 7749 6239342 6239530 4.610000e-67 267.0
12 TraesCS6A01G109100 chr5D 91.837 196 8 4 7555 7749 503327451 503327263 4.610000e-67 267.0
13 TraesCS6A01G109100 chr4D 97.510 241 6 0 515 755 111718212 111717972 5.600000e-111 412.0
14 TraesCS6A01G109100 chr1B 97.131 244 7 0 515 758 39730384 39730141 5.600000e-111 412.0
15 TraesCS6A01G109100 chr1B 96.748 246 7 1 514 759 480478081 480478325 7.240000e-110 409.0
16 TraesCS6A01G109100 chr1B 88.525 122 10 3 1657 1777 517901500 517901382 2.250000e-30 145.0
17 TraesCS6A01G109100 chr7A 95.600 250 11 0 513 762 719445071 719445320 1.210000e-107 401.0
18 TraesCS6A01G109100 chr7A 92.336 274 15 5 513 782 651714940 651714669 1.220000e-102 385.0
19 TraesCS6A01G109100 chr1A 95.968 248 9 1 508 755 558952251 558952005 1.210000e-107 401.0
20 TraesCS6A01G109100 chr1A 93.561 264 15 1 492 755 21989742 21990003 7.290000e-105 392.0
21 TraesCS6A01G109100 chr2A 92.347 196 7 4 7555 7749 419792718 419792530 9.910000e-69 272.0
22 TraesCS6A01G109100 chr2A 86.992 123 12 3 1655 1776 709587852 709587971 1.360000e-27 135.0
23 TraesCS6A01G109100 chr2A 100.000 29 0 0 5566 5594 639929515 639929543 4.000000e-03 54.7
24 TraesCS6A01G109100 chrUn 91.837 196 9 3 7555 7749 30304475 30304664 4.610000e-67 267.0
25 TraesCS6A01G109100 chrUn 91.837 196 8 4 7555 7749 425830917 425830729 4.610000e-67 267.0
26 TraesCS6A01G109100 chr3B 91.837 196 8 4 7555 7749 201489675 201489487 4.610000e-67 267.0
27 TraesCS6A01G109100 chr2D 91.837 196 8 4 7555 7749 33933037 33933225 4.610000e-67 267.0
28 TraesCS6A01G109100 chr2D 91.837 196 8 4 7555 7749 630263821 630263633 4.610000e-67 267.0
29 TraesCS6A01G109100 chr3D 91.327 196 9 4 7555 7749 24162124 24161936 2.140000e-65 261.0
30 TraesCS6A01G109100 chr4A 96.907 97 3 0 2377 2473 741818612 741818708 6.220000e-36 163.0
31 TraesCS6A01G109100 chr2B 91.667 120 6 3 1658 1776 26551507 26551623 6.220000e-36 163.0
32 TraesCS6A01G109100 chr2B 88.525 122 8 5 1657 1776 434088111 434088228 8.110000e-30 143.0
33 TraesCS6A01G109100 chr5A 88.525 122 10 3 1658 1778 227926528 227926410 2.250000e-30 145.0
34 TraesCS6A01G109100 chr5B 84.028 144 16 6 1653 1794 575820814 575820676 1.750000e-26 132.0
35 TraesCS6A01G109100 chr3A 79.365 126 11 9 10 132 513898596 513898709 3.000000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G109100 chr6A 77789332 77797080 7748 True 14310.0 14310 100.0000 1 7749 1 chr6A.!!$R1 7748
1 TraesCS6A01G109100 chr6B 135122581 135128994 6413 True 4806.5 9297 88.5005 1 6826 2 chr6B.!!$R3 6825
2 TraesCS6A01G109100 chr6D 61144535 61151382 6847 True 2691.5 8842 92.1835 773 7650 4 chr6D.!!$R1 6877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
409 412 0.030908 GAGCAAGATCGGACGGTAGG 59.969 60.000 0.00 0.00 0.00 3.18 F
965 983 0.036952 CAGAGAAAAGAGAGCCGCCA 60.037 55.000 0.00 0.00 0.00 5.69 F
966 984 0.687354 AGAGAAAAGAGAGCCGCCAA 59.313 50.000 0.00 0.00 0.00 4.52 F
967 985 1.072331 AGAGAAAAGAGAGCCGCCAAA 59.928 47.619 0.00 0.00 0.00 3.28 F
968 986 1.197949 GAGAAAAGAGAGCCGCCAAAC 59.802 52.381 0.00 0.00 0.00 2.93 F
3012 3072 0.467804 CCTGCCCTCCTTCTAAGCTC 59.532 60.000 0.00 0.00 0.00 4.09 F
3389 3451 4.227512 TGTGATACTTGCTGCAAAAGTG 57.772 40.909 16.74 7.15 38.32 3.16 F
4967 5037 1.149148 GCAGAAGAAACTGGTCGGAC 58.851 55.000 0.00 0.00 38.22 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1317 1346 1.323271 GGGATCGACCTGCACAGAGA 61.323 60.000 0.00 0.00 38.98 3.10 R
2414 2460 1.134788 CACCATTCCCACGAGTCTACC 60.135 57.143 0.00 0.00 0.00 3.18 R
2722 2768 3.181493 GGTGATTGCACATCAAGATGGAC 60.181 47.826 14.04 6.37 46.96 4.02 R
3012 3072 3.873361 ACATACACATCAATTGCCTCTCG 59.127 43.478 0.00 0.00 0.00 4.04 R
3363 3425 2.068519 TGCAGCAAGTATCACAAGTCG 58.931 47.619 0.00 0.00 0.00 4.18 R
4420 4489 0.596859 GCCAATCGTACCGTCCTAGC 60.597 60.000 0.00 0.00 0.00 3.42 R
5702 5774 2.863137 CCAAGTCGCTTCAAGCTCTATC 59.137 50.000 8.02 0.00 39.60 2.08 R
6870 6978 0.680618 CCACTTGCTTTGCATCCCAA 59.319 50.000 0.00 0.00 38.76 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.987046 CGGTGTGAGAAAAGCTTCAAC 58.013 47.619 0.00 0.00 33.64 3.18
21 22 2.614057 CGGTGTGAGAAAAGCTTCAACT 59.386 45.455 0.00 0.00 33.64 3.16
22 23 3.807622 CGGTGTGAGAAAAGCTTCAACTA 59.192 43.478 0.00 0.00 33.64 2.24
23 24 4.452455 CGGTGTGAGAAAAGCTTCAACTAT 59.548 41.667 0.00 0.00 33.64 2.12
62 65 2.437359 ACATTGAGAGCTGCGGCC 60.437 61.111 15.55 5.84 39.73 6.13
63 66 2.437180 CATTGAGAGCTGCGGCCA 60.437 61.111 15.55 1.67 39.73 5.36
87 90 0.943835 CACGACAGTGCAACGATGGA 60.944 55.000 10.92 0.00 45.86 3.41
90 93 1.442769 GACAGTGCAACGATGGATGT 58.557 50.000 0.00 0.00 45.86 3.06
91 94 1.129251 GACAGTGCAACGATGGATGTG 59.871 52.381 6.89 3.38 45.86 3.21
92 95 0.179181 CAGTGCAACGATGGATGTGC 60.179 55.000 0.00 0.00 45.86 4.57
93 96 0.321919 AGTGCAACGATGGATGTGCT 60.322 50.000 0.00 0.00 45.86 4.40
94 97 1.066215 AGTGCAACGATGGATGTGCTA 60.066 47.619 0.00 0.00 45.86 3.49
95 98 1.942657 GTGCAACGATGGATGTGCTAT 59.057 47.619 0.00 0.00 0.00 2.97
100 103 1.269778 ACGATGGATGTGCTATGACGG 60.270 52.381 0.00 0.00 0.00 4.79
101 104 1.151668 GATGGATGTGCTATGACGGC 58.848 55.000 0.00 0.00 0.00 5.68
103 106 1.067416 GGATGTGCTATGACGGCGA 59.933 57.895 16.62 0.00 0.00 5.54
105 108 0.249073 GATGTGCTATGACGGCGACT 60.249 55.000 16.62 0.00 0.00 4.18
106 109 0.528466 ATGTGCTATGACGGCGACTG 60.528 55.000 16.62 3.53 0.00 3.51
120 123 0.742281 CGACTGCTAGGTGCTGCAAT 60.742 55.000 2.77 0.00 43.25 3.56
125 128 0.731417 GCTAGGTGCTGCAATGACAG 59.269 55.000 2.77 0.00 40.80 3.51
130 133 0.607489 GTGCTGCAATGACAGAGGGT 60.607 55.000 2.77 0.00 40.25 4.34
133 136 1.901591 CTGCAATGACAGAGGGTGTT 58.098 50.000 0.00 0.00 40.56 3.32
134 137 1.538512 CTGCAATGACAGAGGGTGTTG 59.461 52.381 0.00 0.00 40.56 3.33
165 168 2.356135 AGACGACGCCATTTTTGCTAT 58.644 42.857 0.00 0.00 0.00 2.97
172 175 1.413812 GCCATTTTTGCTATGAGGGGG 59.586 52.381 0.00 0.00 0.00 5.40
204 207 2.795973 CTGTACCGGCGATGACGA 59.204 61.111 9.30 0.00 42.66 4.20
208 211 0.248743 GTACCGGCGATGACGAATGA 60.249 55.000 9.30 0.00 42.66 2.57
211 214 0.875908 CCGGCGATGACGAATGATGT 60.876 55.000 9.30 0.00 42.66 3.06
215 218 1.071894 GCGATGACGAATGATGTGACG 60.072 52.381 0.00 0.00 42.66 4.35
216 219 2.450160 CGATGACGAATGATGTGACGA 58.550 47.619 0.00 0.00 42.66 4.20
217 220 3.045688 CGATGACGAATGATGTGACGAT 58.954 45.455 0.00 0.00 42.66 3.73
223 226 2.794631 CGAATGATGTGACGATGACCGA 60.795 50.000 0.00 0.00 41.76 4.69
236 239 2.833582 ACCGACGGCGATGAGGAT 60.834 61.111 15.16 0.00 40.82 3.24
243 246 3.040763 GCGATGAGGATGGCGAGC 61.041 66.667 0.00 0.00 0.00 5.03
282 285 1.617850 CGATGGAGGAAGGAGATCCAG 59.382 57.143 0.92 0.00 45.89 3.86
284 287 0.692419 TGGAGGAAGGAGATCCAGGC 60.692 60.000 0.92 0.00 42.27 4.85
309 312 4.473520 CGGTGGGCTGGTGGCTAG 62.474 72.222 0.00 0.00 41.46 3.42
310 313 4.803908 GGTGGGCTGGTGGCTAGC 62.804 72.222 6.04 6.04 40.03 3.42
334 337 2.801631 GGAGGATGTCCAGGCGAGG 61.802 68.421 1.30 0.00 46.10 4.63
367 370 1.230324 GCAGCGTGAGGAAAGAAAGT 58.770 50.000 0.00 0.00 0.00 2.66
369 372 2.157863 GCAGCGTGAGGAAAGAAAGTAC 59.842 50.000 0.00 0.00 0.00 2.73
381 384 1.906574 AGAAAGTACGAGATGGGGCAA 59.093 47.619 0.00 0.00 0.00 4.52
382 385 2.093447 AGAAAGTACGAGATGGGGCAAG 60.093 50.000 0.00 0.00 0.00 4.01
384 387 0.824759 AGTACGAGATGGGGCAAGTC 59.175 55.000 0.00 0.00 0.00 3.01
385 388 0.535335 GTACGAGATGGGGCAAGTCA 59.465 55.000 0.00 0.00 0.00 3.41
386 389 1.066430 GTACGAGATGGGGCAAGTCAA 60.066 52.381 0.00 0.00 0.00 3.18
388 391 1.361668 CGAGATGGGGCAAGTCAACG 61.362 60.000 0.00 0.00 0.00 4.10
389 392 1.648467 GAGATGGGGCAAGTCAACGC 61.648 60.000 0.00 0.00 0.00 4.84
391 394 3.545124 ATGGGGCAAGTCAACGCGA 62.545 57.895 15.93 0.00 0.00 5.87
395 398 2.631428 GCAAGTCAACGCGAGCAA 59.369 55.556 15.93 0.00 0.00 3.91
396 399 1.439365 GCAAGTCAACGCGAGCAAG 60.439 57.895 15.93 0.00 0.00 4.01
397 400 1.831389 GCAAGTCAACGCGAGCAAGA 61.831 55.000 15.93 0.00 0.00 3.02
398 401 0.792640 CAAGTCAACGCGAGCAAGAT 59.207 50.000 15.93 0.00 0.00 2.40
399 402 1.071605 AAGTCAACGCGAGCAAGATC 58.928 50.000 15.93 0.00 0.00 2.75
400 403 1.073216 AGTCAACGCGAGCAAGATCG 61.073 55.000 15.93 3.01 45.48 3.69
401 404 1.805539 TCAACGCGAGCAAGATCGG 60.806 57.895 15.93 2.67 42.94 4.18
402 405 1.805539 CAACGCGAGCAAGATCGGA 60.806 57.895 15.93 0.00 42.94 4.55
403 406 1.805945 AACGCGAGCAAGATCGGAC 60.806 57.895 15.93 0.00 42.94 4.79
404 407 3.315521 CGCGAGCAAGATCGGACG 61.316 66.667 0.00 1.85 42.94 4.79
405 408 2.956964 GCGAGCAAGATCGGACGG 60.957 66.667 9.87 0.00 42.94 4.79
406 409 2.490217 CGAGCAAGATCGGACGGT 59.510 61.111 0.00 0.00 39.04 4.83
407 410 1.725665 CGAGCAAGATCGGACGGTA 59.274 57.895 0.00 0.00 39.04 4.02
408 411 0.317103 CGAGCAAGATCGGACGGTAG 60.317 60.000 0.00 0.00 39.04 3.18
409 412 0.030908 GAGCAAGATCGGACGGTAGG 59.969 60.000 0.00 0.00 0.00 3.18
410 413 1.067582 GCAAGATCGGACGGTAGGG 59.932 63.158 0.00 0.00 0.00 3.53
411 414 1.067582 CAAGATCGGACGGTAGGGC 59.932 63.158 0.00 0.00 0.00 5.19
412 415 1.076192 AAGATCGGACGGTAGGGCT 60.076 57.895 0.00 0.00 0.00 5.19
413 416 1.108132 AAGATCGGACGGTAGGGCTC 61.108 60.000 0.00 0.00 0.00 4.70
414 417 2.905807 GATCGGACGGTAGGGCTCG 61.906 68.421 0.00 0.00 0.00 5.03
415 418 3.711059 ATCGGACGGTAGGGCTCGT 62.711 63.158 0.00 0.00 42.67 4.18
416 419 3.446570 CGGACGGTAGGGCTCGTT 61.447 66.667 0.00 0.00 39.88 3.85
417 420 2.183555 GGACGGTAGGGCTCGTTG 59.816 66.667 0.00 0.00 39.88 4.10
418 421 2.508663 GACGGTAGGGCTCGTTGC 60.509 66.667 0.00 0.00 39.88 4.17
419 422 3.291101 GACGGTAGGGCTCGTTGCA 62.291 63.158 5.65 0.00 45.15 4.08
420 423 2.186903 CGGTAGGGCTCGTTGCAT 59.813 61.111 0.00 0.00 45.15 3.96
421 424 1.883084 CGGTAGGGCTCGTTGCATC 60.883 63.158 0.00 0.00 45.15 3.91
422 425 1.883084 GGTAGGGCTCGTTGCATCG 60.883 63.158 10.93 10.93 45.15 3.84
423 426 1.141019 GTAGGGCTCGTTGCATCGA 59.859 57.895 18.18 18.18 45.15 3.59
434 437 4.479993 GCATCGAGCAGCTGGGGT 62.480 66.667 17.12 0.00 44.79 4.95
435 438 2.513204 CATCGAGCAGCTGGGGTG 60.513 66.667 17.12 0.00 0.00 4.61
442 445 4.415150 CAGCTGGGGTGCGACCAT 62.415 66.667 5.57 0.00 41.02 3.55
443 446 4.101448 AGCTGGGGTGCGACCATC 62.101 66.667 7.49 0.00 41.02 3.51
448 451 2.750237 GGGTGCGACCATCCCAAC 60.750 66.667 7.49 0.00 41.02 3.77
449 452 2.351276 GGTGCGACCATCCCAACT 59.649 61.111 0.00 0.00 38.42 3.16
450 453 1.600107 GGTGCGACCATCCCAACTA 59.400 57.895 0.00 0.00 38.42 2.24
451 454 0.180406 GGTGCGACCATCCCAACTAT 59.820 55.000 0.00 0.00 38.42 2.12
452 455 1.408266 GGTGCGACCATCCCAACTATT 60.408 52.381 0.00 0.00 38.42 1.73
453 456 1.670811 GTGCGACCATCCCAACTATTG 59.329 52.381 0.00 0.00 0.00 1.90
462 465 3.887868 CAACTATTGGGCCGGCGC 61.888 66.667 34.64 34.64 0.00 6.53
480 483 4.858680 GCCGGGGCCTAAGCACTC 62.859 72.222 2.18 0.00 44.23 3.51
481 484 4.530857 CCGGGGCCTAAGCACTCG 62.531 72.222 0.84 0.00 44.23 4.18
499 502 7.054855 GCACTCGCTATCTCAAAATATAAGG 57.945 40.000 0.00 0.00 34.30 2.69
500 503 6.647067 GCACTCGCTATCTCAAAATATAAGGT 59.353 38.462 0.00 0.00 34.30 3.50
501 504 7.148722 GCACTCGCTATCTCAAAATATAAGGTC 60.149 40.741 0.00 0.00 34.30 3.85
502 505 8.085296 CACTCGCTATCTCAAAATATAAGGTCT 58.915 37.037 0.00 0.00 0.00 3.85
503 506 8.643324 ACTCGCTATCTCAAAATATAAGGTCTT 58.357 33.333 0.00 0.00 0.00 3.01
505 508 9.909644 TCGCTATCTCAAAATATAAGGTCTTAC 57.090 33.333 0.00 0.00 0.00 2.34
506 509 9.915629 CGCTATCTCAAAATATAAGGTCTTACT 57.084 33.333 0.00 0.00 0.00 2.24
520 523 7.479352 AAGGTCTTACTAAAAGTCTACTCCC 57.521 40.000 0.00 0.00 0.00 4.30
521 524 6.803017 AGGTCTTACTAAAAGTCTACTCCCT 58.197 40.000 0.00 0.00 0.00 4.20
522 525 6.891361 AGGTCTTACTAAAAGTCTACTCCCTC 59.109 42.308 0.00 0.00 0.00 4.30
523 526 6.096705 GGTCTTACTAAAAGTCTACTCCCTCC 59.903 46.154 0.00 0.00 0.00 4.30
524 527 6.891361 GTCTTACTAAAAGTCTACTCCCTCCT 59.109 42.308 0.00 0.00 0.00 3.69
525 528 7.396907 GTCTTACTAAAAGTCTACTCCCTCCTT 59.603 40.741 0.00 0.00 0.00 3.36
526 529 7.614974 TCTTACTAAAAGTCTACTCCCTCCTTC 59.385 40.741 0.00 0.00 0.00 3.46
527 530 5.024785 ACTAAAAGTCTACTCCCTCCTTCC 58.975 45.833 0.00 0.00 0.00 3.46
528 531 3.562108 AAAGTCTACTCCCTCCTTCCA 57.438 47.619 0.00 0.00 0.00 3.53
529 532 3.786213 AAGTCTACTCCCTCCTTCCAT 57.214 47.619 0.00 0.00 0.00 3.41
530 533 3.322191 AGTCTACTCCCTCCTTCCATC 57.678 52.381 0.00 0.00 0.00 3.51
531 534 2.862597 AGTCTACTCCCTCCTTCCATCT 59.137 50.000 0.00 0.00 0.00 2.90
532 535 4.055820 AGTCTACTCCCTCCTTCCATCTA 58.944 47.826 0.00 0.00 0.00 1.98
533 536 4.672650 AGTCTACTCCCTCCTTCCATCTAT 59.327 45.833 0.00 0.00 0.00 1.98
534 537 5.858408 AGTCTACTCCCTCCTTCCATCTATA 59.142 44.000 0.00 0.00 0.00 1.31
535 538 6.511083 AGTCTACTCCCTCCTTCCATCTATAT 59.489 42.308 0.00 0.00 0.00 0.86
536 539 7.689409 AGTCTACTCCCTCCTTCCATCTATATA 59.311 40.741 0.00 0.00 0.00 0.86
537 540 7.996644 GTCTACTCCCTCCTTCCATCTATATAG 59.003 44.444 3.10 3.10 0.00 1.31
538 541 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
539 542 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
540 543 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
541 544 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
542 545 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
543 546 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
544 547 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
545 548 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
546 549 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
547 550 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
548 551 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
549 552 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
550 553 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
551 554 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
552 555 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
553 556 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
573 576 6.887626 TTTTTAAGACCGCCTTTGACTATT 57.112 33.333 0.00 0.00 36.34 1.73
574 577 5.873179 TTTAAGACCGCCTTTGACTATTG 57.127 39.130 0.00 0.00 36.34 1.90
575 578 3.695830 AAGACCGCCTTTGACTATTGA 57.304 42.857 0.00 0.00 0.00 2.57
576 579 2.973945 AGACCGCCTTTGACTATTGAC 58.026 47.619 0.00 0.00 0.00 3.18
577 580 2.301870 AGACCGCCTTTGACTATTGACA 59.698 45.455 0.00 0.00 0.00 3.58
578 581 3.071479 GACCGCCTTTGACTATTGACAA 58.929 45.455 0.00 0.00 0.00 3.18
579 582 3.074412 ACCGCCTTTGACTATTGACAAG 58.926 45.455 0.00 0.00 0.00 3.16
580 583 3.244422 ACCGCCTTTGACTATTGACAAGA 60.244 43.478 0.00 0.00 0.00 3.02
581 584 3.941483 CCGCCTTTGACTATTGACAAGAT 59.059 43.478 0.00 0.00 0.00 2.40
582 585 4.396166 CCGCCTTTGACTATTGACAAGATT 59.604 41.667 0.00 0.00 0.00 2.40
583 586 5.584649 CCGCCTTTGACTATTGACAAGATTA 59.415 40.000 0.00 0.00 0.00 1.75
584 587 6.093495 CCGCCTTTGACTATTGACAAGATTAA 59.907 38.462 0.00 0.00 0.00 1.40
585 588 7.201732 CCGCCTTTGACTATTGACAAGATTAAT 60.202 37.037 0.00 0.00 0.00 1.40
586 589 8.826710 CGCCTTTGACTATTGACAAGATTAATA 58.173 33.333 0.00 0.00 0.00 0.98
599 602 9.045223 TGACAAGATTAATAGTACATGACATGC 57.955 33.333 15.49 0.11 0.00 4.06
600 603 8.962884 ACAAGATTAATAGTACATGACATGCA 57.037 30.769 15.49 0.00 0.00 3.96
601 604 8.830580 ACAAGATTAATAGTACATGACATGCAC 58.169 33.333 15.49 12.79 0.00 4.57
602 605 8.829612 CAAGATTAATAGTACATGACATGCACA 58.170 33.333 18.79 7.29 0.00 4.57
603 606 8.962884 AGATTAATAGTACATGACATGCACAA 57.037 30.769 18.79 6.65 0.00 3.33
604 607 9.565090 AGATTAATAGTACATGACATGCACAAT 57.435 29.630 18.79 10.52 0.00 2.71
605 608 9.817365 GATTAATAGTACATGACATGCACAATC 57.183 33.333 18.79 14.44 0.00 2.67
606 609 8.962884 TTAATAGTACATGACATGCACAATCT 57.037 30.769 18.79 9.57 0.00 2.40
607 610 6.856135 ATAGTACATGACATGCACAATCTG 57.144 37.500 18.79 0.00 0.00 2.90
608 611 4.835678 AGTACATGACATGCACAATCTGA 58.164 39.130 18.79 0.00 0.00 3.27
609 612 5.247862 AGTACATGACATGCACAATCTGAA 58.752 37.500 18.79 0.00 0.00 3.02
610 613 5.706833 AGTACATGACATGCACAATCTGAAA 59.293 36.000 18.79 0.00 0.00 2.69
611 614 5.456548 ACATGACATGCACAATCTGAAAA 57.543 34.783 15.49 0.00 0.00 2.29
612 615 6.032956 ACATGACATGCACAATCTGAAAAT 57.967 33.333 15.49 0.00 0.00 1.82
613 616 6.460781 ACATGACATGCACAATCTGAAAATT 58.539 32.000 15.49 0.00 0.00 1.82
614 617 7.604549 ACATGACATGCACAATCTGAAAATTA 58.395 30.769 15.49 0.00 0.00 1.40
615 618 8.255206 ACATGACATGCACAATCTGAAAATTAT 58.745 29.630 15.49 0.00 0.00 1.28
616 619 9.738832 CATGACATGCACAATCTGAAAATTATA 57.261 29.630 1.71 0.00 0.00 0.98
618 621 9.955208 TGACATGCACAATCTGAAAATTATATC 57.045 29.630 0.00 0.00 0.00 1.63
619 622 9.955208 GACATGCACAATCTGAAAATTATATCA 57.045 29.630 0.00 0.00 0.00 2.15
641 644 7.307493 TCATTGAAAGATCCTTTCACATACG 57.693 36.000 18.39 8.27 38.05 3.06
642 645 7.102993 TCATTGAAAGATCCTTTCACATACGA 58.897 34.615 18.39 9.92 38.05 3.43
643 646 7.606073 TCATTGAAAGATCCTTTCACATACGAA 59.394 33.333 18.39 6.07 38.05 3.85
644 647 7.921786 TTGAAAGATCCTTTCACATACGAAT 57.078 32.000 18.39 0.00 38.05 3.34
645 648 7.921786 TGAAAGATCCTTTCACATACGAATT 57.078 32.000 15.67 0.00 33.90 2.17
646 649 8.335532 TGAAAGATCCTTTCACATACGAATTT 57.664 30.769 15.67 0.00 33.90 1.82
647 650 9.443323 TGAAAGATCCTTTCACATACGAATTTA 57.557 29.630 15.67 0.00 33.90 1.40
650 653 7.906160 AGATCCTTTCACATACGAATTTAACG 58.094 34.615 0.00 0.00 0.00 3.18
651 654 7.762615 AGATCCTTTCACATACGAATTTAACGA 59.237 33.333 0.00 0.00 34.70 3.85
652 655 7.837202 TCCTTTCACATACGAATTTAACGAT 57.163 32.000 0.00 0.00 34.70 3.73
653 656 7.680982 TCCTTTCACATACGAATTTAACGATG 58.319 34.615 0.00 0.00 34.70 3.84
654 657 7.332430 TCCTTTCACATACGAATTTAACGATGT 59.668 33.333 0.00 0.00 34.61 3.06
655 658 7.425309 CCTTTCACATACGAATTTAACGATGTG 59.575 37.037 17.41 17.41 42.65 3.21
656 659 5.791589 TCACATACGAATTTAACGATGTGC 58.208 37.500 18.07 0.00 42.01 4.57
657 660 5.579119 TCACATACGAATTTAACGATGTGCT 59.421 36.000 18.07 0.00 42.01 4.40
658 661 6.091577 TCACATACGAATTTAACGATGTGCTT 59.908 34.615 18.07 0.00 42.01 3.91
659 662 6.740905 CACATACGAATTTAACGATGTGCTTT 59.259 34.615 1.86 0.00 39.51 3.51
660 663 6.740905 ACATACGAATTTAACGATGTGCTTTG 59.259 34.615 0.00 0.00 33.82 2.77
661 664 5.103290 ACGAATTTAACGATGTGCTTTGT 57.897 34.783 0.00 0.00 34.70 2.83
662 665 4.909305 ACGAATTTAACGATGTGCTTTGTG 59.091 37.500 0.00 0.00 34.70 3.33
663 666 4.909305 CGAATTTAACGATGTGCTTTGTGT 59.091 37.500 0.00 0.00 0.00 3.72
664 667 6.074642 CGAATTTAACGATGTGCTTTGTGTA 58.925 36.000 0.00 0.00 0.00 2.90
665 668 6.575572 CGAATTTAACGATGTGCTTTGTGTAA 59.424 34.615 0.00 0.00 0.00 2.41
666 669 7.201149 CGAATTTAACGATGTGCTTTGTGTAAG 60.201 37.037 0.00 0.00 36.90 2.34
667 670 5.994887 TTAACGATGTGCTTTGTGTAAGT 57.005 34.783 0.00 0.00 36.19 2.24
668 671 4.893424 AACGATGTGCTTTGTGTAAGTT 57.107 36.364 0.00 0.00 36.19 2.66
669 672 4.209452 ACGATGTGCTTTGTGTAAGTTG 57.791 40.909 0.00 0.00 36.19 3.16
670 673 2.973224 CGATGTGCTTTGTGTAAGTTGC 59.027 45.455 0.00 0.00 36.19 4.17
671 674 3.547813 CGATGTGCTTTGTGTAAGTTGCA 60.548 43.478 0.00 0.00 36.19 4.08
672 675 4.549458 GATGTGCTTTGTGTAAGTTGCAT 58.451 39.130 0.00 0.00 36.19 3.96
673 676 3.704512 TGTGCTTTGTGTAAGTTGCATG 58.295 40.909 0.00 0.00 36.19 4.06
674 677 3.130164 TGTGCTTTGTGTAAGTTGCATGT 59.870 39.130 0.00 0.00 36.19 3.21
675 678 3.730715 GTGCTTTGTGTAAGTTGCATGTC 59.269 43.478 0.00 0.00 36.19 3.06
676 679 3.379688 TGCTTTGTGTAAGTTGCATGTCA 59.620 39.130 0.00 0.00 36.19 3.58
677 680 4.037803 TGCTTTGTGTAAGTTGCATGTCAT 59.962 37.500 0.00 0.00 36.19 3.06
678 681 5.240403 TGCTTTGTGTAAGTTGCATGTCATA 59.760 36.000 0.00 0.00 36.19 2.15
679 682 6.072008 TGCTTTGTGTAAGTTGCATGTCATAT 60.072 34.615 0.00 0.00 36.19 1.78
680 683 7.120432 TGCTTTGTGTAAGTTGCATGTCATATA 59.880 33.333 0.00 0.00 36.19 0.86
681 684 8.131100 GCTTTGTGTAAGTTGCATGTCATATAT 58.869 33.333 0.00 0.00 36.19 0.86
710 713 8.925161 TGCTTTAATATTTGGTCAATGTTAGC 57.075 30.769 0.00 0.00 31.98 3.09
711 714 7.978975 TGCTTTAATATTTGGTCAATGTTAGCC 59.021 33.333 0.00 0.00 31.31 3.93
712 715 8.197439 GCTTTAATATTTGGTCAATGTTAGCCT 58.803 33.333 0.00 0.00 31.98 4.58
713 716 9.736023 CTTTAATATTTGGTCAATGTTAGCCTC 57.264 33.333 0.00 0.00 31.98 4.70
714 717 6.377327 AATATTTGGTCAATGTTAGCCTCG 57.623 37.500 0.00 0.00 0.00 4.63
715 718 3.410631 TTTGGTCAATGTTAGCCTCGA 57.589 42.857 0.00 0.00 0.00 4.04
716 719 3.410631 TTGGTCAATGTTAGCCTCGAA 57.589 42.857 0.00 0.00 0.00 3.71
717 720 3.410631 TGGTCAATGTTAGCCTCGAAA 57.589 42.857 0.00 0.00 0.00 3.46
718 721 3.745799 TGGTCAATGTTAGCCTCGAAAA 58.254 40.909 0.00 0.00 0.00 2.29
719 722 4.138290 TGGTCAATGTTAGCCTCGAAAAA 58.862 39.130 0.00 0.00 0.00 1.94
720 723 4.023536 TGGTCAATGTTAGCCTCGAAAAAC 60.024 41.667 0.00 0.00 0.00 2.43
721 724 4.148891 GTCAATGTTAGCCTCGAAAAACG 58.851 43.478 0.00 0.00 44.09 3.60
722 725 2.894307 ATGTTAGCCTCGAAAAACGC 57.106 45.000 0.00 0.00 42.26 4.84
723 726 1.584175 TGTTAGCCTCGAAAAACGCA 58.416 45.000 0.00 0.00 42.26 5.24
724 727 2.147958 TGTTAGCCTCGAAAAACGCAT 58.852 42.857 0.00 0.00 42.26 4.73
725 728 2.550606 TGTTAGCCTCGAAAAACGCATT 59.449 40.909 0.00 0.00 42.26 3.56
726 729 3.747010 TGTTAGCCTCGAAAAACGCATTA 59.253 39.130 0.00 0.00 42.26 1.90
727 730 4.142988 TGTTAGCCTCGAAAAACGCATTAG 60.143 41.667 0.00 0.00 42.26 1.73
728 731 1.737793 AGCCTCGAAAAACGCATTAGG 59.262 47.619 0.00 0.00 42.26 2.69
729 732 1.794076 GCCTCGAAAAACGCATTAGGC 60.794 52.381 0.00 0.00 45.73 3.93
730 733 1.202143 CCTCGAAAAACGCATTAGGCC 60.202 52.381 0.00 0.00 42.26 5.19
731 734 0.806241 TCGAAAAACGCATTAGGCCC 59.194 50.000 0.00 0.00 42.26 5.80
732 735 0.808755 CGAAAAACGCATTAGGCCCT 59.191 50.000 0.00 0.00 40.31 5.19
733 736 2.011222 CGAAAAACGCATTAGGCCCTA 58.989 47.619 0.00 0.00 40.31 3.53
734 737 2.616842 CGAAAAACGCATTAGGCCCTAT 59.383 45.455 0.00 0.00 40.31 2.57
735 738 3.810941 CGAAAAACGCATTAGGCCCTATA 59.189 43.478 0.00 0.00 40.31 1.31
736 739 4.454504 CGAAAAACGCATTAGGCCCTATAT 59.545 41.667 0.00 0.00 40.31 0.86
737 740 5.640357 CGAAAAACGCATTAGGCCCTATATA 59.360 40.000 0.00 0.00 40.31 0.86
738 741 6.183360 CGAAAAACGCATTAGGCCCTATATAG 60.183 42.308 0.00 2.46 40.31 1.31
739 742 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
740 743 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
741 744 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
742 745 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
743 746 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
744 747 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
745 748 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
746 749 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
747 750 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
748 751 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
749 752 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
750 753 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
751 754 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
752 755 5.463154 CCCTATATAGATGGAAGGAGGGAG 58.537 50.000 11.53 0.00 44.48 4.30
753 756 5.042979 CCCTATATAGATGGAAGGAGGGAGT 60.043 48.000 11.53 0.00 44.48 3.85
754 757 6.162420 CCCTATATAGATGGAAGGAGGGAGTA 59.838 46.154 11.53 0.00 44.48 2.59
755 758 7.313276 CCCTATATAGATGGAAGGAGGGAGTAA 60.313 44.444 11.53 0.00 44.48 2.24
756 759 8.293216 CCTATATAGATGGAAGGAGGGAGTAAT 58.707 40.741 11.53 0.00 0.00 1.89
760 763 8.997301 ATAGATGGAAGGAGGGAGTAATATTT 57.003 34.615 0.00 0.00 0.00 1.40
761 764 7.713704 AGATGGAAGGAGGGAGTAATATTTT 57.286 36.000 0.00 0.00 0.00 1.82
762 765 7.521669 AGATGGAAGGAGGGAGTAATATTTTG 58.478 38.462 0.00 0.00 0.00 2.44
763 766 6.652205 TGGAAGGAGGGAGTAATATTTTGT 57.348 37.500 0.00 0.00 0.00 2.83
764 767 6.423182 TGGAAGGAGGGAGTAATATTTTGTG 58.577 40.000 0.00 0.00 0.00 3.33
765 768 5.299531 GGAAGGAGGGAGTAATATTTTGTGC 59.700 44.000 0.00 0.00 0.00 4.57
766 769 5.717119 AGGAGGGAGTAATATTTTGTGCT 57.283 39.130 0.00 0.00 0.00 4.40
767 770 6.824958 AGGAGGGAGTAATATTTTGTGCTA 57.175 37.500 0.00 0.00 0.00 3.49
768 771 6.831976 AGGAGGGAGTAATATTTTGTGCTAG 58.168 40.000 0.00 0.00 0.00 3.42
769 772 5.470437 GGAGGGAGTAATATTTTGTGCTAGC 59.530 44.000 8.10 8.10 0.00 3.42
770 773 5.377478 AGGGAGTAATATTTTGTGCTAGCC 58.623 41.667 13.29 4.15 0.00 3.93
771 774 5.104109 AGGGAGTAATATTTTGTGCTAGCCA 60.104 40.000 13.29 7.05 0.00 4.75
790 793 9.918630 GCTAGCCACATAATGATTCAATAAAAT 57.081 29.630 2.29 0.00 0.00 1.82
834 837 2.029728 GGCTCTCACAATCGAATGAACG 59.970 50.000 7.64 0.00 0.00 3.95
835 838 2.923655 GCTCTCACAATCGAATGAACGA 59.076 45.455 7.64 0.00 46.04 3.85
836 839 3.000277 GCTCTCACAATCGAATGAACGAG 60.000 47.826 7.64 9.71 45.22 4.18
837 840 4.415735 CTCTCACAATCGAATGAACGAGA 58.584 43.478 7.64 13.08 45.22 4.04
840 843 4.556233 TCACAATCGAATGAACGAGACTT 58.444 39.130 7.64 0.00 45.22 3.01
841 844 4.988540 TCACAATCGAATGAACGAGACTTT 59.011 37.500 7.64 0.00 45.22 2.66
842 845 5.118664 TCACAATCGAATGAACGAGACTTTC 59.881 40.000 7.64 0.00 45.22 2.62
843 846 4.389077 ACAATCGAATGAACGAGACTTTCC 59.611 41.667 7.64 0.00 45.22 3.13
844 847 2.592194 TCGAATGAACGAGACTTTCCG 58.408 47.619 0.00 0.00 37.37 4.30
845 848 1.059264 CGAATGAACGAGACTTTCCGC 59.941 52.381 0.00 0.00 35.09 5.54
846 849 1.393883 GAATGAACGAGACTTTCCGCC 59.606 52.381 0.00 0.00 0.00 6.13
847 850 0.608640 ATGAACGAGACTTTCCGCCT 59.391 50.000 0.00 0.00 0.00 5.52
852 865 0.526524 CGAGACTTTCCGCCTGCTAG 60.527 60.000 0.00 0.00 0.00 3.42
854 867 1.749634 GAGACTTTCCGCCTGCTAGTA 59.250 52.381 0.00 0.00 0.00 1.82
871 889 7.050970 TGCTAGTATAGAAATCGAACACCAT 57.949 36.000 0.00 0.00 42.77 3.55
890 908 0.823460 TGTGCTCGTGCTCATATCCA 59.177 50.000 11.19 0.00 37.71 3.41
891 909 1.413812 TGTGCTCGTGCTCATATCCAT 59.586 47.619 11.19 0.00 37.71 3.41
899 917 3.928992 CGTGCTCATATCCATACATCCAC 59.071 47.826 0.00 0.00 0.00 4.02
952 970 0.108585 ACAAAAGCGAGGCCAGAGAA 59.891 50.000 5.01 0.00 0.00 2.87
954 972 1.608590 CAAAAGCGAGGCCAGAGAAAA 59.391 47.619 5.01 0.00 0.00 2.29
955 973 1.528129 AAAGCGAGGCCAGAGAAAAG 58.472 50.000 5.01 0.00 0.00 2.27
956 974 0.687354 AAGCGAGGCCAGAGAAAAGA 59.313 50.000 5.01 0.00 0.00 2.52
958 976 0.247736 GCGAGGCCAGAGAAAAGAGA 59.752 55.000 5.01 0.00 0.00 3.10
961 979 0.617935 AGGCCAGAGAAAAGAGAGCC 59.382 55.000 5.01 0.00 39.25 4.70
963 981 1.365368 GCCAGAGAAAAGAGAGCCGC 61.365 60.000 0.00 0.00 0.00 6.53
964 982 0.742635 CCAGAGAAAAGAGAGCCGCC 60.743 60.000 0.00 0.00 0.00 6.13
965 983 0.036952 CAGAGAAAAGAGAGCCGCCA 60.037 55.000 0.00 0.00 0.00 5.69
966 984 0.687354 AGAGAAAAGAGAGCCGCCAA 59.313 50.000 0.00 0.00 0.00 4.52
967 985 1.072331 AGAGAAAAGAGAGCCGCCAAA 59.928 47.619 0.00 0.00 0.00 3.28
968 986 1.197949 GAGAAAAGAGAGCCGCCAAAC 59.802 52.381 0.00 0.00 0.00 2.93
1041 1064 2.623297 CTAACCCCCTCCCCCTCCTC 62.623 70.000 0.00 0.00 0.00 3.71
1254 1278 2.124693 GTCTCCCTCTCTCCCGCTG 61.125 68.421 0.00 0.00 0.00 5.18
1317 1346 1.228510 GCTTATCTGCCTTGCCCCT 59.771 57.895 0.00 0.00 0.00 4.79
1558 1589 2.160219 CCATCCACTCGACAACACATTG 59.840 50.000 0.00 0.00 41.98 2.82
1572 1603 7.096106 CGACAACACATTGCTCATTATTTGTTT 60.096 33.333 0.00 0.00 39.66 2.83
1683 1715 3.877508 CCCTCCATCCGAAATTACTTGTC 59.122 47.826 0.00 0.00 0.00 3.18
1684 1716 4.513442 CCTCCATCCGAAATTACTTGTCA 58.487 43.478 0.00 0.00 0.00 3.58
1688 1720 2.070783 TCCGAAATTACTTGTCACGGC 58.929 47.619 0.00 0.00 38.94 5.68
1996 2039 2.948889 TTCCTCCTCCCAAGAGATCA 57.051 50.000 0.00 0.00 43.39 2.92
2113 2156 8.519526 CAGTTGTTGAATAGGTGCCTTATTTTA 58.480 33.333 0.00 0.00 0.00 1.52
2204 2250 6.197903 TCTGGAGAAGTCTGAATCTATGGAA 58.802 40.000 0.00 0.00 0.00 3.53
2300 2346 1.802636 GCGCATTCAAGGCTAGCAA 59.197 52.632 18.24 1.89 0.00 3.91
2414 2460 9.710979 TGTTTTCTTAAATTACAGAGTGAAACG 57.289 29.630 0.00 0.00 45.86 3.60
2771 2817 2.290071 CCTGGGGTATTACAATAGGCCG 60.290 54.545 0.00 0.00 0.00 6.13
3012 3072 0.467804 CCTGCCCTCCTTCTAAGCTC 59.532 60.000 0.00 0.00 0.00 4.09
3363 3425 4.321899 CCTGCTCTCTGAACTATATGCCTC 60.322 50.000 0.00 0.00 0.00 4.70
3389 3451 4.227512 TGTGATACTTGCTGCAAAAGTG 57.772 40.909 16.74 7.15 38.32 3.16
3565 3627 5.130477 CCACTCTAGTAGACTTCCTCTCTCT 59.870 48.000 0.00 0.00 0.00 3.10
4320 4389 5.269505 ACAGCACTCTTCATACCAGTATC 57.730 43.478 0.00 0.00 0.00 2.24
4420 4489 5.350914 GTCTCAGATGATGAAGTTTCCACAG 59.649 44.000 0.00 0.00 37.52 3.66
4967 5037 1.149148 GCAGAAGAAACTGGTCGGAC 58.851 55.000 0.00 0.00 38.22 4.79
5369 5440 8.651588 CAGTCACAACTATGTCTTAACAATCTC 58.348 37.037 0.00 0.00 37.82 2.75
5683 5755 2.915349 AGTGCTTATGCCATCTCAGTG 58.085 47.619 0.00 0.00 38.71 3.66
5684 5756 2.238144 AGTGCTTATGCCATCTCAGTGT 59.762 45.455 0.00 0.00 38.71 3.55
5702 5774 3.498397 AGTGTGGTATCTGCAAAGTTTCG 59.502 43.478 0.00 0.00 0.00 3.46
6225 6298 3.290948 AAGTAGCAAACTGTCAACCCA 57.709 42.857 0.00 0.00 38.88 4.51
6281 6356 9.603921 CCAAATCCTGCAATTTAGTCATAATTT 57.396 29.630 0.00 0.00 0.00 1.82
6870 6978 6.970613 GGTAGTCAAAATGTGTTTCTTTCGTT 59.029 34.615 0.00 0.00 0.00 3.85
6879 6987 2.690497 TGTTTCTTTCGTTTGGGATGCA 59.310 40.909 0.00 0.00 0.00 3.96
6944 7135 8.283291 GGGTTTGCTACTCAAATATATTTCTCG 58.717 37.037 7.76 2.74 45.43 4.04
6967 7158 7.479980 TCGATGCTTGGGAAATAACAATTTAG 58.520 34.615 0.00 0.00 0.00 1.85
6968 7159 7.122055 TCGATGCTTGGGAAATAACAATTTAGT 59.878 33.333 0.00 0.00 0.00 2.24
6969 7160 7.759433 CGATGCTTGGGAAATAACAATTTAGTT 59.241 33.333 0.00 0.00 35.55 2.24
7039 7230 0.392193 AGGCATTCTCAAGTGGAGCG 60.392 55.000 0.00 0.00 43.70 5.03
7115 7309 5.244851 TGCCCTGCATTTTCATACAAAACTA 59.755 36.000 0.00 0.00 31.71 2.24
7116 7310 6.070881 TGCCCTGCATTTTCATACAAAACTAT 60.071 34.615 0.00 0.00 31.71 2.12
7121 7315 8.347004 TGCATTTTCATACAAAACTATGAGGA 57.653 30.769 0.00 0.00 35.12 3.71
7162 7374 1.332375 TGTACACCTGCGCTTGTTTTC 59.668 47.619 9.73 4.83 0.00 2.29
7164 7376 1.355210 CACCTGCGCTTGTTTTCGT 59.645 52.632 9.73 0.00 0.00 3.85
7171 7383 0.861837 CGCTTGTTTTCGTGCTCTCT 59.138 50.000 0.00 0.00 0.00 3.10
7175 7387 3.666374 GCTTGTTTTCGTGCTCTCTGATG 60.666 47.826 0.00 0.00 0.00 3.07
7217 7438 8.738645 AGATAGCCTCATCGTTTATTTCTTTT 57.261 30.769 0.00 0.00 0.00 2.27
7288 7572 3.444850 GCCCATTGCCCATGATAGT 57.555 52.632 0.00 0.00 34.31 2.12
7289 7573 1.708341 GCCCATTGCCCATGATAGTT 58.292 50.000 0.00 0.00 34.31 2.24
7290 7574 1.342174 GCCCATTGCCCATGATAGTTG 59.658 52.381 0.00 0.00 34.31 3.16
7291 7575 2.948115 CCCATTGCCCATGATAGTTGA 58.052 47.619 0.00 0.00 34.31 3.18
7292 7576 3.298619 CCCATTGCCCATGATAGTTGAA 58.701 45.455 0.00 0.00 34.31 2.69
7293 7577 3.899360 CCCATTGCCCATGATAGTTGAAT 59.101 43.478 0.00 0.00 34.31 2.57
7294 7578 5.078949 CCCATTGCCCATGATAGTTGAATA 58.921 41.667 0.00 0.00 34.31 1.75
7295 7579 5.539574 CCCATTGCCCATGATAGTTGAATAA 59.460 40.000 0.00 0.00 34.31 1.40
7296 7580 6.041865 CCCATTGCCCATGATAGTTGAATAAA 59.958 38.462 0.00 0.00 34.31 1.40
7297 7581 7.418827 CCCATTGCCCATGATAGTTGAATAAAA 60.419 37.037 0.00 0.00 34.31 1.52
7298 7582 7.654520 CCATTGCCCATGATAGTTGAATAAAAG 59.345 37.037 0.00 0.00 34.31 2.27
7299 7583 6.147864 TGCCCATGATAGTTGAATAAAAGC 57.852 37.500 0.00 0.00 0.00 3.51
7300 7584 5.893255 TGCCCATGATAGTTGAATAAAAGCT 59.107 36.000 0.00 0.00 0.00 3.74
7301 7585 6.039717 TGCCCATGATAGTTGAATAAAAGCTC 59.960 38.462 0.00 0.00 0.00 4.09
7302 7586 6.264067 GCCCATGATAGTTGAATAAAAGCTCT 59.736 38.462 0.00 0.00 0.00 4.09
7303 7587 7.445402 GCCCATGATAGTTGAATAAAAGCTCTA 59.555 37.037 0.00 0.00 0.00 2.43
7304 7588 9.342308 CCCATGATAGTTGAATAAAAGCTCTAA 57.658 33.333 0.00 0.00 0.00 2.10
7311 7595 8.885693 AGTTGAATAAAAGCTCTAATTTCCCT 57.114 30.769 0.00 0.00 0.00 4.20
7312 7596 8.743714 AGTTGAATAAAAGCTCTAATTTCCCTG 58.256 33.333 0.00 0.00 0.00 4.45
7313 7597 7.100458 TGAATAAAAGCTCTAATTTCCCTGC 57.900 36.000 0.00 0.00 0.00 4.85
7469 7757 7.119116 ACACATTTTTACGTCAGAATATCTGCA 59.881 33.333 0.00 0.00 43.95 4.41
7562 7850 4.022589 ACATGTTCTTGCAACATCCTTGAG 60.023 41.667 0.00 0.00 38.69 3.02
7564 7852 1.538047 TCTTGCAACATCCTTGAGGC 58.462 50.000 0.00 0.00 34.44 4.70
7579 7867 4.812626 CCTTGAGGCATTTGCAATTAATCC 59.187 41.667 0.00 0.00 44.36 3.01
7588 7876 7.384660 GGCATTTGCAATTAATCCGAATCAATA 59.615 33.333 0.00 0.00 44.36 1.90
7628 7916 0.327576 CCCCACCTCCCATCTTACCT 60.328 60.000 0.00 0.00 0.00 3.08
7717 8005 6.679327 AGCAATTTTATTTACTCCGACTCC 57.321 37.500 0.00 0.00 0.00 3.85
7718 8006 5.293569 AGCAATTTTATTTACTCCGACTCCG 59.706 40.000 0.00 0.00 0.00 4.63
7719 8007 5.064325 GCAATTTTATTTACTCCGACTCCGT 59.936 40.000 0.00 0.00 0.00 4.69
7720 8008 6.475207 CAATTTTATTTACTCCGACTCCGTG 58.525 40.000 0.00 0.00 0.00 4.94
7721 8009 4.789012 TTTATTTACTCCGACTCCGTGT 57.211 40.909 0.00 0.00 0.00 4.49
7722 8010 4.789012 TTATTTACTCCGACTCCGTGTT 57.211 40.909 0.00 0.00 0.00 3.32
7723 8011 5.895636 TTATTTACTCCGACTCCGTGTTA 57.104 39.130 0.00 0.00 0.00 2.41
7724 8012 4.996788 ATTTACTCCGACTCCGTGTTAT 57.003 40.909 0.00 0.00 0.00 1.89
7725 8013 3.770263 TTACTCCGACTCCGTGTTATG 57.230 47.619 0.00 0.00 0.00 1.90
7726 8014 1.542492 ACTCCGACTCCGTGTTATGT 58.458 50.000 0.00 0.00 0.00 2.29
7727 8015 1.891150 ACTCCGACTCCGTGTTATGTT 59.109 47.619 0.00 0.00 0.00 2.71
7728 8016 2.094854 ACTCCGACTCCGTGTTATGTTC 60.095 50.000 0.00 0.00 0.00 3.18
7729 8017 1.203052 TCCGACTCCGTGTTATGTTCC 59.797 52.381 0.00 0.00 0.00 3.62
7730 8018 1.636988 CGACTCCGTGTTATGTTCCC 58.363 55.000 0.00 0.00 0.00 3.97
7731 8019 1.738030 CGACTCCGTGTTATGTTCCCC 60.738 57.143 0.00 0.00 0.00 4.81
7732 8020 1.553704 GACTCCGTGTTATGTTCCCCT 59.446 52.381 0.00 0.00 0.00 4.79
7733 8021 1.982958 ACTCCGTGTTATGTTCCCCTT 59.017 47.619 0.00 0.00 0.00 3.95
7734 8022 3.175594 ACTCCGTGTTATGTTCCCCTTA 58.824 45.455 0.00 0.00 0.00 2.69
7735 8023 3.197116 ACTCCGTGTTATGTTCCCCTTAG 59.803 47.826 0.00 0.00 0.00 2.18
7736 8024 3.175594 TCCGTGTTATGTTCCCCTTAGT 58.824 45.455 0.00 0.00 0.00 2.24
7737 8025 3.055675 TCCGTGTTATGTTCCCCTTAGTG 60.056 47.826 0.00 0.00 0.00 2.74
7738 8026 3.055675 CCGTGTTATGTTCCCCTTAGTGA 60.056 47.826 0.00 0.00 0.00 3.41
7739 8027 4.563993 CCGTGTTATGTTCCCCTTAGTGAA 60.564 45.833 0.00 0.00 0.00 3.18
7740 8028 4.998672 CGTGTTATGTTCCCCTTAGTGAAA 59.001 41.667 0.00 0.00 0.00 2.69
7741 8029 5.646360 CGTGTTATGTTCCCCTTAGTGAAAT 59.354 40.000 0.00 0.00 0.00 2.17
7742 8030 6.819649 CGTGTTATGTTCCCCTTAGTGAAATA 59.180 38.462 0.00 0.00 0.00 1.40
7743 8031 7.497909 CGTGTTATGTTCCCCTTAGTGAAATAT 59.502 37.037 0.00 0.00 0.00 1.28
7744 8032 9.185680 GTGTTATGTTCCCCTTAGTGAAATATT 57.814 33.333 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.287009 GCCATTGGCGTATAGTTGAAGC 60.287 50.000 12.82 0.00 39.62 3.86
14 15 3.609103 GCCATTGGCGTATAGTTGAAG 57.391 47.619 12.82 0.00 39.62 3.02
38 41 0.390866 CAGCTCTCAATGTCACCGCT 60.391 55.000 0.00 0.00 0.00 5.52
43 46 1.742880 GCCGCAGCTCTCAATGTCA 60.743 57.895 0.00 0.00 35.50 3.58
70 73 0.371301 CATCCATCGTTGCACTGTCG 59.629 55.000 0.00 0.00 0.00 4.35
78 81 2.219445 CGTCATAGCACATCCATCGTTG 59.781 50.000 0.00 0.00 0.00 4.10
80 83 1.269778 CCGTCATAGCACATCCATCGT 60.270 52.381 0.00 0.00 0.00 3.73
87 90 0.528466 CAGTCGCCGTCATAGCACAT 60.528 55.000 0.00 0.00 0.00 3.21
90 93 1.381165 TAGCAGTCGCCGTCATAGCA 61.381 55.000 0.00 0.00 39.83 3.49
91 94 0.661780 CTAGCAGTCGCCGTCATAGC 60.662 60.000 0.00 0.00 39.83 2.97
92 95 0.039978 CCTAGCAGTCGCCGTCATAG 60.040 60.000 0.00 0.00 39.83 2.23
93 96 0.750546 ACCTAGCAGTCGCCGTCATA 60.751 55.000 0.00 0.00 39.83 2.15
94 97 2.052690 ACCTAGCAGTCGCCGTCAT 61.053 57.895 0.00 0.00 39.83 3.06
95 98 2.675423 ACCTAGCAGTCGCCGTCA 60.675 61.111 0.00 0.00 39.83 4.35
106 109 0.731417 CTGTCATTGCAGCACCTAGC 59.269 55.000 0.00 0.00 46.19 3.42
120 123 2.425592 CGCCAACACCCTCTGTCA 59.574 61.111 0.00 0.00 30.29 3.58
125 128 2.033194 GTAGCACGCCAACACCCTC 61.033 63.158 0.00 0.00 0.00 4.30
130 133 1.218875 CGTCTTGTAGCACGCCAACA 61.219 55.000 0.00 0.00 0.00 3.33
133 136 1.372499 GTCGTCTTGTAGCACGCCA 60.372 57.895 0.00 0.00 35.93 5.69
134 137 2.434134 CGTCGTCTTGTAGCACGCC 61.434 63.158 0.00 0.00 35.93 5.68
177 180 2.818274 CGGTACAGCGGGAAAGCC 60.818 66.667 0.00 0.00 38.01 4.35
178 181 2.818274 CCGGTACAGCGGGAAAGC 60.818 66.667 11.94 0.00 39.69 3.51
189 192 0.248743 TCATTCGTCATCGCCGGTAC 60.249 55.000 1.90 0.00 36.96 3.34
199 202 3.179048 GTCATCGTCACATCATTCGTCA 58.821 45.455 0.00 0.00 0.00 4.35
204 207 2.540515 GTCGGTCATCGTCACATCATT 58.459 47.619 0.00 0.00 40.32 2.57
208 211 1.138883 CCGTCGGTCATCGTCACAT 59.861 57.895 2.08 0.00 40.32 3.21
211 214 4.470170 CGCCGTCGGTCATCGTCA 62.470 66.667 13.94 0.00 40.32 4.35
215 218 1.658717 CTCATCGCCGTCGGTCATC 60.659 63.158 13.94 0.00 36.13 2.92
216 219 2.413351 CTCATCGCCGTCGGTCAT 59.587 61.111 13.94 2.03 36.13 3.06
217 220 3.822192 CCTCATCGCCGTCGGTCA 61.822 66.667 13.94 0.00 36.13 4.02
223 226 4.592192 CGCCATCCTCATCGCCGT 62.592 66.667 0.00 0.00 0.00 5.68
256 259 2.190578 CTTCCTCCATCGCCCCAC 59.809 66.667 0.00 0.00 0.00 4.61
257 260 3.089874 CCTTCCTCCATCGCCCCA 61.090 66.667 0.00 0.00 0.00 4.96
292 295 4.473520 CTAGCCACCAGCCCACCG 62.474 72.222 0.00 0.00 45.47 4.94
299 302 4.473520 CCACCCGCTAGCCACCAG 62.474 72.222 9.66 0.00 0.00 4.00
302 305 4.162690 CTCCCACCCGCTAGCCAC 62.163 72.222 9.66 0.00 0.00 5.01
305 308 2.844839 ATCCTCCCACCCGCTAGC 60.845 66.667 4.06 4.06 0.00 3.42
307 310 1.760875 GACATCCTCCCACCCGCTA 60.761 63.158 0.00 0.00 0.00 4.26
308 311 3.083997 GACATCCTCCCACCCGCT 61.084 66.667 0.00 0.00 0.00 5.52
309 312 4.176752 GGACATCCTCCCACCCGC 62.177 72.222 0.00 0.00 31.83 6.13
310 313 2.687200 TGGACATCCTCCCACCCG 60.687 66.667 0.00 0.00 38.49 5.28
311 314 2.378634 CCTGGACATCCTCCCACCC 61.379 68.421 0.00 0.00 38.49 4.61
312 315 3.049080 GCCTGGACATCCTCCCACC 62.049 68.421 0.00 0.00 38.49 4.61
313 316 2.592308 GCCTGGACATCCTCCCAC 59.408 66.667 0.00 0.00 38.49 4.61
314 317 3.083349 CGCCTGGACATCCTCCCA 61.083 66.667 0.00 0.00 38.49 4.37
352 355 4.156664 TCTCGTACTTTCTTTCCTCACG 57.843 45.455 0.00 0.00 0.00 4.35
354 357 4.081642 CCCATCTCGTACTTTCTTTCCTCA 60.082 45.833 0.00 0.00 0.00 3.86
367 370 1.066430 GTTGACTTGCCCCATCTCGTA 60.066 52.381 0.00 0.00 0.00 3.43
369 372 1.361668 CGTTGACTTGCCCCATCTCG 61.362 60.000 0.00 0.00 0.00 4.04
381 384 1.073216 CGATCTTGCTCGCGTTGACT 61.073 55.000 5.77 0.00 0.00 3.41
382 385 1.341802 CGATCTTGCTCGCGTTGAC 59.658 57.895 5.77 0.00 0.00 3.18
384 387 1.805539 TCCGATCTTGCTCGCGTTG 60.806 57.895 5.77 1.17 37.33 4.10
385 388 1.805945 GTCCGATCTTGCTCGCGTT 60.806 57.895 5.77 0.00 37.33 4.84
386 389 2.202623 GTCCGATCTTGCTCGCGT 60.203 61.111 5.77 0.00 37.33 6.01
388 391 2.332362 TACCGTCCGATCTTGCTCGC 62.332 60.000 0.00 0.00 37.33 5.03
389 392 0.317103 CTACCGTCCGATCTTGCTCG 60.317 60.000 0.00 0.00 38.37 5.03
391 394 1.392710 CCCTACCGTCCGATCTTGCT 61.393 60.000 0.00 0.00 0.00 3.91
395 398 1.528776 GAGCCCTACCGTCCGATCT 60.529 63.158 0.00 0.00 0.00 2.75
396 399 2.905807 CGAGCCCTACCGTCCGATC 61.906 68.421 0.00 0.00 0.00 3.69
397 400 2.905880 CGAGCCCTACCGTCCGAT 60.906 66.667 0.00 0.00 0.00 4.18
398 401 3.925630 AACGAGCCCTACCGTCCGA 62.926 63.158 0.00 0.00 38.13 4.55
399 402 3.446570 AACGAGCCCTACCGTCCG 61.447 66.667 0.00 0.00 38.13 4.79
400 403 2.183555 CAACGAGCCCTACCGTCC 59.816 66.667 0.00 0.00 38.13 4.79
401 404 2.508663 GCAACGAGCCCTACCGTC 60.509 66.667 0.00 0.00 38.13 4.79
402 405 2.573609 GATGCAACGAGCCCTACCGT 62.574 60.000 0.00 0.00 44.83 4.83
403 406 1.883084 GATGCAACGAGCCCTACCG 60.883 63.158 0.00 0.00 44.83 4.02
404 407 1.883084 CGATGCAACGAGCCCTACC 60.883 63.158 11.36 0.00 44.83 3.18
405 408 1.141019 TCGATGCAACGAGCCCTAC 59.859 57.895 15.63 0.00 44.83 3.18
406 409 3.610976 TCGATGCAACGAGCCCTA 58.389 55.556 15.63 0.00 44.83 3.53
417 420 4.479993 ACCCCAGCTGCTCGATGC 62.480 66.667 8.66 0.00 43.25 3.91
418 421 2.513204 CACCCCAGCTGCTCGATG 60.513 66.667 8.66 0.00 0.00 3.84
419 422 4.479993 GCACCCCAGCTGCTCGAT 62.480 66.667 8.66 0.00 0.00 3.59
425 428 4.415150 ATGGTCGCACCCCAGCTG 62.415 66.667 6.78 6.78 37.50 4.24
426 429 4.101448 GATGGTCGCACCCCAGCT 62.101 66.667 3.33 0.00 37.50 4.24
428 431 4.489771 GGGATGGTCGCACCCCAG 62.490 72.222 0.00 0.00 37.50 4.45
430 433 4.041762 TTGGGATGGTCGCACCCC 62.042 66.667 0.00 0.00 42.65 4.95
431 434 1.906105 TAGTTGGGATGGTCGCACCC 61.906 60.000 0.00 0.00 39.12 4.61
432 435 0.180406 ATAGTTGGGATGGTCGCACC 59.820 55.000 0.00 0.00 39.12 5.01
433 436 1.670811 CAATAGTTGGGATGGTCGCAC 59.329 52.381 0.00 0.00 39.12 5.34
434 437 2.036958 CAATAGTTGGGATGGTCGCA 57.963 50.000 0.00 0.00 37.56 5.10
445 448 3.887868 GCGCCGGCCCAATAGTTG 61.888 66.667 23.46 4.03 0.00 3.16
463 466 4.858680 GAGTGCTTAGGCCCCGGC 62.859 72.222 0.00 1.04 41.06 6.13
464 467 4.530857 CGAGTGCTTAGGCCCCGG 62.531 72.222 0.00 0.00 37.74 5.73
475 478 6.647067 ACCTTATATTTTGAGATAGCGAGTGC 59.353 38.462 0.00 0.00 43.24 4.40
476 479 8.085296 AGACCTTATATTTTGAGATAGCGAGTG 58.915 37.037 0.00 0.00 0.00 3.51
477 480 8.184304 AGACCTTATATTTTGAGATAGCGAGT 57.816 34.615 0.00 0.00 0.00 4.18
479 482 9.909644 GTAAGACCTTATATTTTGAGATAGCGA 57.090 33.333 0.00 0.00 0.00 4.93
480 483 9.915629 AGTAAGACCTTATATTTTGAGATAGCG 57.084 33.333 0.00 0.00 0.00 4.26
494 497 9.199645 GGGAGTAGACTTTTAGTAAGACCTTAT 57.800 37.037 0.00 0.00 0.00 1.73
495 498 8.397172 AGGGAGTAGACTTTTAGTAAGACCTTA 58.603 37.037 0.00 0.00 0.00 2.69
496 499 7.247500 AGGGAGTAGACTTTTAGTAAGACCTT 58.753 38.462 0.00 0.00 0.00 3.50
497 500 6.803017 AGGGAGTAGACTTTTAGTAAGACCT 58.197 40.000 0.00 0.00 0.00 3.85
498 501 6.096705 GGAGGGAGTAGACTTTTAGTAAGACC 59.903 46.154 0.00 0.00 0.00 3.85
499 502 6.891361 AGGAGGGAGTAGACTTTTAGTAAGAC 59.109 42.308 0.00 0.00 0.00 3.01
500 503 7.042106 AGGAGGGAGTAGACTTTTAGTAAGA 57.958 40.000 0.00 0.00 0.00 2.10
501 504 7.147863 GGAAGGAGGGAGTAGACTTTTAGTAAG 60.148 44.444 0.00 0.00 0.00 2.34
502 505 6.666980 GGAAGGAGGGAGTAGACTTTTAGTAA 59.333 42.308 0.00 0.00 0.00 2.24
503 506 6.193504 GGAAGGAGGGAGTAGACTTTTAGTA 58.806 44.000 0.00 0.00 0.00 1.82
504 507 5.024785 GGAAGGAGGGAGTAGACTTTTAGT 58.975 45.833 0.00 0.00 0.00 2.24
505 508 5.024118 TGGAAGGAGGGAGTAGACTTTTAG 58.976 45.833 0.00 0.00 0.00 1.85
506 509 5.019657 TGGAAGGAGGGAGTAGACTTTTA 57.980 43.478 0.00 0.00 0.00 1.52
507 510 3.870559 TGGAAGGAGGGAGTAGACTTTT 58.129 45.455 0.00 0.00 0.00 2.27
508 511 3.562108 TGGAAGGAGGGAGTAGACTTT 57.438 47.619 0.00 0.00 0.00 2.66
509 512 3.273618 AGATGGAAGGAGGGAGTAGACTT 59.726 47.826 0.00 0.00 0.00 3.01
510 513 2.862597 AGATGGAAGGAGGGAGTAGACT 59.137 50.000 0.00 0.00 0.00 3.24
511 514 3.322191 AGATGGAAGGAGGGAGTAGAC 57.678 52.381 0.00 0.00 0.00 2.59
512 515 6.996876 ATATAGATGGAAGGAGGGAGTAGA 57.003 41.667 0.00 0.00 0.00 2.59
513 516 7.294584 CCTATATAGATGGAAGGAGGGAGTAG 58.705 46.154 11.53 0.00 0.00 2.57
514 517 6.162420 CCCTATATAGATGGAAGGAGGGAGTA 59.838 46.154 11.53 0.00 44.48 2.59
515 518 5.042979 CCCTATATAGATGGAAGGAGGGAGT 60.043 48.000 11.53 0.00 44.48 3.85
516 519 5.463154 CCCTATATAGATGGAAGGAGGGAG 58.537 50.000 11.53 0.00 44.48 4.30
517 520 4.327010 GCCCTATATAGATGGAAGGAGGGA 60.327 50.000 11.53 0.00 44.48 4.20
518 521 3.970640 GCCCTATATAGATGGAAGGAGGG 59.029 52.174 11.53 3.52 44.52 4.30
519 522 3.970640 GGCCCTATATAGATGGAAGGAGG 59.029 52.174 11.53 1.87 0.00 4.30
520 523 4.889780 AGGCCCTATATAGATGGAAGGAG 58.110 47.826 11.53 0.00 0.00 3.69
521 524 4.994411 AGGCCCTATATAGATGGAAGGA 57.006 45.455 11.53 0.00 0.00 3.36
522 525 6.465035 GCATTAGGCCCTATATAGATGGAAGG 60.465 46.154 11.53 3.94 36.11 3.46
523 526 6.529220 GCATTAGGCCCTATATAGATGGAAG 58.471 44.000 11.53 0.00 36.11 3.46
524 527 5.070446 CGCATTAGGCCCTATATAGATGGAA 59.930 44.000 11.53 0.00 40.31 3.53
525 528 4.588951 CGCATTAGGCCCTATATAGATGGA 59.411 45.833 11.53 0.00 40.31 3.41
526 529 4.345257 ACGCATTAGGCCCTATATAGATGG 59.655 45.833 11.53 6.04 40.31 3.51
527 530 5.537300 ACGCATTAGGCCCTATATAGATG 57.463 43.478 11.53 6.87 40.31 2.90
528 531 6.561519 AAACGCATTAGGCCCTATATAGAT 57.438 37.500 11.53 0.00 40.31 1.98
529 532 6.368779 AAAACGCATTAGGCCCTATATAGA 57.631 37.500 11.53 0.00 40.31 1.98
550 553 6.487331 TCAATAGTCAAAGGCGGTCTTAAAAA 59.513 34.615 0.00 0.00 34.78 1.94
551 554 5.998981 TCAATAGTCAAAGGCGGTCTTAAAA 59.001 36.000 0.00 0.00 34.78 1.52
552 555 5.410439 GTCAATAGTCAAAGGCGGTCTTAAA 59.590 40.000 0.00 0.00 34.78 1.52
553 556 4.933400 GTCAATAGTCAAAGGCGGTCTTAA 59.067 41.667 0.00 0.00 34.78 1.85
554 557 4.020928 TGTCAATAGTCAAAGGCGGTCTTA 60.021 41.667 0.00 0.00 34.78 2.10
555 558 3.244422 TGTCAATAGTCAAAGGCGGTCTT 60.244 43.478 0.00 0.00 37.28 3.01
556 559 2.301870 TGTCAATAGTCAAAGGCGGTCT 59.698 45.455 0.00 0.00 0.00 3.85
557 560 2.695359 TGTCAATAGTCAAAGGCGGTC 58.305 47.619 0.00 0.00 0.00 4.79
558 561 2.851263 TGTCAATAGTCAAAGGCGGT 57.149 45.000 0.00 0.00 0.00 5.68
559 562 3.334691 TCTTGTCAATAGTCAAAGGCGG 58.665 45.455 0.00 0.00 0.00 6.13
560 563 5.551760 AATCTTGTCAATAGTCAAAGGCG 57.448 39.130 0.00 0.00 0.00 5.52
573 576 9.045223 GCATGTCATGTACTATTAATCTTGTCA 57.955 33.333 14.26 0.00 0.00 3.58
574 577 9.045223 TGCATGTCATGTACTATTAATCTTGTC 57.955 33.333 14.26 0.00 0.00 3.18
575 578 8.830580 GTGCATGTCATGTACTATTAATCTTGT 58.169 33.333 22.47 0.00 41.79 3.16
576 579 8.829612 TGTGCATGTCATGTACTATTAATCTTG 58.170 33.333 27.47 0.00 44.74 3.02
577 580 8.962884 TGTGCATGTCATGTACTATTAATCTT 57.037 30.769 27.47 0.00 44.74 2.40
578 581 8.962884 TTGTGCATGTCATGTACTATTAATCT 57.037 30.769 27.47 0.00 44.74 2.40
579 582 9.817365 GATTGTGCATGTCATGTACTATTAATC 57.183 33.333 27.47 23.02 44.74 1.75
580 583 9.565090 AGATTGTGCATGTCATGTACTATTAAT 57.435 29.630 27.47 20.22 44.74 1.40
581 584 8.829612 CAGATTGTGCATGTCATGTACTATTAA 58.170 33.333 27.47 17.22 44.74 1.40
582 585 8.203485 TCAGATTGTGCATGTCATGTACTATTA 58.797 33.333 27.47 15.55 44.74 0.98
583 586 7.049754 TCAGATTGTGCATGTCATGTACTATT 58.950 34.615 27.47 15.87 44.74 1.73
584 587 6.585416 TCAGATTGTGCATGTCATGTACTAT 58.415 36.000 27.47 25.42 44.74 2.12
585 588 5.976458 TCAGATTGTGCATGTCATGTACTA 58.024 37.500 27.47 22.59 44.74 1.82
586 589 4.835678 TCAGATTGTGCATGTCATGTACT 58.164 39.130 27.47 13.72 44.74 2.73
587 590 5.550232 TTCAGATTGTGCATGTCATGTAC 57.450 39.130 22.84 22.84 44.71 2.90
588 591 6.572167 TTTTCAGATTGTGCATGTCATGTA 57.428 33.333 14.26 7.11 0.00 2.29
589 592 5.456548 TTTTCAGATTGTGCATGTCATGT 57.543 34.783 14.26 0.00 0.00 3.21
590 593 6.961359 AATTTTCAGATTGTGCATGTCATG 57.039 33.333 8.56 8.56 0.00 3.07
592 595 9.955208 GATATAATTTTCAGATTGTGCATGTCA 57.045 29.630 0.00 0.00 0.00 3.58
593 596 9.955208 TGATATAATTTTCAGATTGTGCATGTC 57.045 29.630 0.00 0.00 0.00 3.06
615 618 9.045223 CGTATGTGAAAGGATCTTTCAATGATA 57.955 33.333 20.32 14.69 39.76 2.15
616 619 7.770433 TCGTATGTGAAAGGATCTTTCAATGAT 59.230 33.333 20.32 15.41 39.76 2.45
617 620 7.102993 TCGTATGTGAAAGGATCTTTCAATGA 58.897 34.615 20.32 14.38 39.76 2.57
618 621 7.307493 TCGTATGTGAAAGGATCTTTCAATG 57.693 36.000 20.32 12.79 39.76 2.82
619 622 7.921786 TTCGTATGTGAAAGGATCTTTCAAT 57.078 32.000 20.32 17.31 39.76 2.57
620 623 7.921786 ATTCGTATGTGAAAGGATCTTTCAA 57.078 32.000 20.32 13.08 39.76 2.69
621 624 7.921786 AATTCGTATGTGAAAGGATCTTTCA 57.078 32.000 16.29 16.29 36.21 2.69
624 627 8.388103 CGTTAAATTCGTATGTGAAAGGATCTT 58.612 33.333 0.00 0.00 0.00 2.40
625 628 7.762615 TCGTTAAATTCGTATGTGAAAGGATCT 59.237 33.333 0.00 0.00 0.00 2.75
626 629 7.902032 TCGTTAAATTCGTATGTGAAAGGATC 58.098 34.615 0.00 0.00 0.00 3.36
627 630 7.837202 TCGTTAAATTCGTATGTGAAAGGAT 57.163 32.000 0.00 0.00 0.00 3.24
628 631 7.332430 ACATCGTTAAATTCGTATGTGAAAGGA 59.668 33.333 0.00 0.00 32.59 3.36
629 632 7.425309 CACATCGTTAAATTCGTATGTGAAAGG 59.575 37.037 16.50 0.00 42.19 3.11
630 633 7.045612 GCACATCGTTAAATTCGTATGTGAAAG 60.046 37.037 21.03 7.38 42.19 2.62
631 634 6.739100 GCACATCGTTAAATTCGTATGTGAAA 59.261 34.615 21.03 0.00 42.19 2.69
632 635 6.091577 AGCACATCGTTAAATTCGTATGTGAA 59.908 34.615 21.03 0.00 42.19 3.18
633 636 5.579119 AGCACATCGTTAAATTCGTATGTGA 59.421 36.000 21.03 1.70 42.19 3.58
634 637 5.795766 AGCACATCGTTAAATTCGTATGTG 58.204 37.500 16.83 16.83 42.31 3.21
635 638 6.417191 AAGCACATCGTTAAATTCGTATGT 57.583 33.333 0.00 0.00 33.32 2.29
636 639 6.740905 ACAAAGCACATCGTTAAATTCGTATG 59.259 34.615 0.00 0.00 0.00 2.39
637 640 6.740905 CACAAAGCACATCGTTAAATTCGTAT 59.259 34.615 0.00 0.00 0.00 3.06
638 641 6.074642 CACAAAGCACATCGTTAAATTCGTA 58.925 36.000 0.00 0.00 0.00 3.43
639 642 4.909305 CACAAAGCACATCGTTAAATTCGT 59.091 37.500 0.00 0.00 0.00 3.85
640 643 4.909305 ACACAAAGCACATCGTTAAATTCG 59.091 37.500 0.00 0.00 0.00 3.34
641 644 7.589954 ACTTACACAAAGCACATCGTTAAATTC 59.410 33.333 0.00 0.00 38.93 2.17
642 645 7.422399 ACTTACACAAAGCACATCGTTAAATT 58.578 30.769 0.00 0.00 38.93 1.82
643 646 6.966021 ACTTACACAAAGCACATCGTTAAAT 58.034 32.000 0.00 0.00 38.93 1.40
644 647 6.366315 ACTTACACAAAGCACATCGTTAAA 57.634 33.333 0.00 0.00 38.93 1.52
645 648 5.994887 ACTTACACAAAGCACATCGTTAA 57.005 34.783 0.00 0.00 38.93 2.01
646 649 5.743467 CAACTTACACAAAGCACATCGTTA 58.257 37.500 0.00 0.00 38.93 3.18
647 650 4.597079 CAACTTACACAAAGCACATCGTT 58.403 39.130 0.00 0.00 38.93 3.85
648 651 3.548014 GCAACTTACACAAAGCACATCGT 60.548 43.478 0.00 0.00 38.93 3.73
649 652 2.973224 GCAACTTACACAAAGCACATCG 59.027 45.455 0.00 0.00 38.93 3.84
650 653 3.963665 TGCAACTTACACAAAGCACATC 58.036 40.909 0.00 0.00 38.93 3.06
651 654 4.202141 ACATGCAACTTACACAAAGCACAT 60.202 37.500 0.00 0.00 38.93 3.21
652 655 3.130164 ACATGCAACTTACACAAAGCACA 59.870 39.130 0.00 0.00 38.93 4.57
653 656 3.705604 ACATGCAACTTACACAAAGCAC 58.294 40.909 0.00 0.00 38.93 4.40
654 657 3.379688 TGACATGCAACTTACACAAAGCA 59.620 39.130 0.00 0.00 38.93 3.91
655 658 3.963665 TGACATGCAACTTACACAAAGC 58.036 40.909 0.00 0.00 38.93 3.51
684 687 9.364989 GCTAACATTGACCAAATATTAAAGCAA 57.635 29.630 0.00 0.00 0.00 3.91
685 688 7.978975 GGCTAACATTGACCAAATATTAAAGCA 59.021 33.333 0.00 0.00 0.00 3.91
686 689 8.197439 AGGCTAACATTGACCAAATATTAAAGC 58.803 33.333 0.00 0.00 0.00 3.51
687 690 9.736023 GAGGCTAACATTGACCAAATATTAAAG 57.264 33.333 0.00 0.00 0.00 1.85
688 691 8.402472 CGAGGCTAACATTGACCAAATATTAAA 58.598 33.333 0.00 0.00 0.00 1.52
689 692 7.771361 TCGAGGCTAACATTGACCAAATATTAA 59.229 33.333 0.00 0.00 0.00 1.40
690 693 7.276658 TCGAGGCTAACATTGACCAAATATTA 58.723 34.615 0.00 0.00 0.00 0.98
691 694 6.119536 TCGAGGCTAACATTGACCAAATATT 58.880 36.000 0.00 0.00 0.00 1.28
692 695 5.680619 TCGAGGCTAACATTGACCAAATAT 58.319 37.500 0.00 0.00 0.00 1.28
693 696 5.092554 TCGAGGCTAACATTGACCAAATA 57.907 39.130 0.00 0.00 0.00 1.40
694 697 3.950397 TCGAGGCTAACATTGACCAAAT 58.050 40.909 0.00 0.00 0.00 2.32
695 698 3.410631 TCGAGGCTAACATTGACCAAA 57.589 42.857 0.00 0.00 0.00 3.28
696 699 3.410631 TTCGAGGCTAACATTGACCAA 57.589 42.857 0.00 0.00 0.00 3.67
697 700 3.410631 TTTCGAGGCTAACATTGACCA 57.589 42.857 0.00 0.00 0.00 4.02
698 701 4.473199 GTTTTTCGAGGCTAACATTGACC 58.527 43.478 0.00 0.00 0.00 4.02
699 702 4.148891 CGTTTTTCGAGGCTAACATTGAC 58.851 43.478 0.00 0.00 42.86 3.18
700 703 3.364565 GCGTTTTTCGAGGCTAACATTGA 60.365 43.478 0.00 0.00 42.86 2.57
701 704 2.908626 GCGTTTTTCGAGGCTAACATTG 59.091 45.455 0.00 0.00 42.86 2.82
702 705 2.550606 TGCGTTTTTCGAGGCTAACATT 59.449 40.909 0.00 0.00 42.86 2.71
703 706 2.147958 TGCGTTTTTCGAGGCTAACAT 58.852 42.857 0.00 0.00 42.86 2.71
704 707 1.584175 TGCGTTTTTCGAGGCTAACA 58.416 45.000 0.00 0.00 42.86 2.41
705 708 2.894307 ATGCGTTTTTCGAGGCTAAC 57.106 45.000 0.00 0.00 42.86 2.34
706 709 3.372822 CCTAATGCGTTTTTCGAGGCTAA 59.627 43.478 0.00 0.00 42.86 3.09
707 710 2.933906 CCTAATGCGTTTTTCGAGGCTA 59.066 45.455 0.00 0.00 42.86 3.93
708 711 1.737793 CCTAATGCGTTTTTCGAGGCT 59.262 47.619 0.00 0.00 42.86 4.58
709 712 1.794076 GCCTAATGCGTTTTTCGAGGC 60.794 52.381 12.47 12.47 44.30 4.70
710 713 1.202143 GGCCTAATGCGTTTTTCGAGG 60.202 52.381 0.00 0.00 42.61 4.63
711 714 1.202143 GGGCCTAATGCGTTTTTCGAG 60.202 52.381 0.84 0.00 42.61 4.04
712 715 0.806241 GGGCCTAATGCGTTTTTCGA 59.194 50.000 0.84 0.00 42.61 3.71
713 716 0.808755 AGGGCCTAATGCGTTTTTCG 59.191 50.000 2.82 0.00 42.61 3.46
714 717 5.959618 ATATAGGGCCTAATGCGTTTTTC 57.040 39.130 18.91 0.00 42.61 2.29
715 718 6.775708 TCTATATAGGGCCTAATGCGTTTTT 58.224 36.000 18.91 0.00 42.61 1.94
716 719 6.368779 TCTATATAGGGCCTAATGCGTTTT 57.631 37.500 18.91 0.30 42.61 2.43
717 720 6.349300 CATCTATATAGGGCCTAATGCGTTT 58.651 40.000 18.91 1.12 42.61 3.60
718 721 5.163301 CCATCTATATAGGGCCTAATGCGTT 60.163 44.000 18.91 1.94 42.61 4.84
719 722 4.345257 CCATCTATATAGGGCCTAATGCGT 59.655 45.833 18.91 2.76 42.61 5.24
720 723 4.588951 TCCATCTATATAGGGCCTAATGCG 59.411 45.833 18.91 10.04 42.61 4.73
721 724 6.465035 CCTTCCATCTATATAGGGCCTAATGC 60.465 46.154 18.91 0.00 40.16 3.56
722 725 6.846505 TCCTTCCATCTATATAGGGCCTAATG 59.153 42.308 18.91 15.42 0.00 1.90
723 726 7.009960 TCCTTCCATCTATATAGGGCCTAAT 57.990 40.000 18.91 14.19 0.00 1.73
724 727 6.432190 TCCTTCCATCTATATAGGGCCTAA 57.568 41.667 18.91 7.61 0.00 2.69
725 728 5.103043 CCTCCTTCCATCTATATAGGGCCTA 60.103 48.000 17.16 17.16 0.00 3.93
726 729 4.327332 CCTCCTTCCATCTATATAGGGCCT 60.327 50.000 12.58 12.58 0.00 5.19
727 730 3.970640 CCTCCTTCCATCTATATAGGGCC 59.029 52.174 9.89 0.00 0.00 5.80
728 731 3.970640 CCCTCCTTCCATCTATATAGGGC 59.029 52.174 9.89 0.00 36.30 5.19
729 732 5.042979 ACTCCCTCCTTCCATCTATATAGGG 60.043 48.000 9.89 4.49 43.23 3.53
730 733 6.098716 ACTCCCTCCTTCCATCTATATAGG 57.901 45.833 9.89 0.00 0.00 2.57
735 738 8.997301 AAATATTACTCCCTCCTTCCATCTAT 57.003 34.615 0.00 0.00 0.00 1.98
736 739 8.660435 CAAAATATTACTCCCTCCTTCCATCTA 58.340 37.037 0.00 0.00 0.00 1.98
737 740 7.129504 ACAAAATATTACTCCCTCCTTCCATCT 59.870 37.037 0.00 0.00 0.00 2.90
738 741 7.229506 CACAAAATATTACTCCCTCCTTCCATC 59.770 40.741 0.00 0.00 0.00 3.51
739 742 7.062957 CACAAAATATTACTCCCTCCTTCCAT 58.937 38.462 0.00 0.00 0.00 3.41
740 743 6.423182 CACAAAATATTACTCCCTCCTTCCA 58.577 40.000 0.00 0.00 0.00 3.53
741 744 5.299531 GCACAAAATATTACTCCCTCCTTCC 59.700 44.000 0.00 0.00 0.00 3.46
742 745 6.122964 AGCACAAAATATTACTCCCTCCTTC 58.877 40.000 0.00 0.00 0.00 3.46
743 746 6.079712 AGCACAAAATATTACTCCCTCCTT 57.920 37.500 0.00 0.00 0.00 3.36
744 747 5.717119 AGCACAAAATATTACTCCCTCCT 57.283 39.130 0.00 0.00 0.00 3.69
745 748 5.470437 GCTAGCACAAAATATTACTCCCTCC 59.530 44.000 10.63 0.00 0.00 4.30
746 749 5.470437 GGCTAGCACAAAATATTACTCCCTC 59.530 44.000 18.24 0.00 0.00 4.30
747 750 5.104109 TGGCTAGCACAAAATATTACTCCCT 60.104 40.000 18.24 0.00 0.00 4.20
748 751 5.008712 GTGGCTAGCACAAAATATTACTCCC 59.991 44.000 18.24 0.00 0.00 4.30
749 752 5.588648 TGTGGCTAGCACAAAATATTACTCC 59.411 40.000 18.24 0.00 0.00 3.85
750 753 6.677781 TGTGGCTAGCACAAAATATTACTC 57.322 37.500 18.24 0.00 0.00 2.59
751 754 8.746052 TTATGTGGCTAGCACAAAATATTACT 57.254 30.769 18.24 3.80 36.06 2.24
752 755 9.398170 CATTATGTGGCTAGCACAAAATATTAC 57.602 33.333 18.24 0.00 36.06 1.89
753 756 9.348476 TCATTATGTGGCTAGCACAAAATATTA 57.652 29.630 18.24 4.84 36.06 0.98
754 757 8.236585 TCATTATGTGGCTAGCACAAAATATT 57.763 30.769 18.24 5.72 36.06 1.28
755 758 7.822161 TCATTATGTGGCTAGCACAAAATAT 57.178 32.000 18.24 6.36 36.06 1.28
756 759 7.822161 ATCATTATGTGGCTAGCACAAAATA 57.178 32.000 18.24 10.39 36.06 1.40
757 760 6.720112 ATCATTATGTGGCTAGCACAAAAT 57.280 33.333 18.24 11.25 36.06 1.82
758 761 6.152492 TGAATCATTATGTGGCTAGCACAAAA 59.848 34.615 18.24 8.85 36.06 2.44
759 762 5.651576 TGAATCATTATGTGGCTAGCACAAA 59.348 36.000 18.24 7.79 36.06 2.83
760 763 5.192176 TGAATCATTATGTGGCTAGCACAA 58.808 37.500 18.24 5.71 36.06 3.33
761 764 4.779696 TGAATCATTATGTGGCTAGCACA 58.220 39.130 18.24 18.18 36.95 4.57
762 765 5.756195 TTGAATCATTATGTGGCTAGCAC 57.244 39.130 18.24 13.11 0.00 4.40
763 766 8.462589 TTTATTGAATCATTATGTGGCTAGCA 57.537 30.769 18.24 0.00 0.00 3.49
764 767 9.918630 ATTTTATTGAATCATTATGTGGCTAGC 57.081 29.630 6.04 6.04 0.00 3.42
799 802 3.251004 GTGAGAGCCTCAACGTTTCAAAT 59.749 43.478 0.00 0.00 42.46 2.32
800 803 2.612212 GTGAGAGCCTCAACGTTTCAAA 59.388 45.455 0.00 0.00 42.46 2.69
802 805 1.138069 TGTGAGAGCCTCAACGTTTCA 59.862 47.619 0.00 0.00 42.46 2.69
834 837 0.533032 ACTAGCAGGCGGAAAGTCTC 59.467 55.000 0.00 0.00 28.06 3.36
835 838 1.848652 TACTAGCAGGCGGAAAGTCT 58.151 50.000 0.00 0.00 33.14 3.24
836 839 2.892784 ATACTAGCAGGCGGAAAGTC 57.107 50.000 0.00 0.00 0.00 3.01
837 840 3.563223 TCTATACTAGCAGGCGGAAAGT 58.437 45.455 0.00 0.00 0.00 2.66
840 843 4.321008 CGATTTCTATACTAGCAGGCGGAA 60.321 45.833 0.00 0.00 0.00 4.30
841 844 3.190744 CGATTTCTATACTAGCAGGCGGA 59.809 47.826 0.00 0.00 0.00 5.54
842 845 3.190744 TCGATTTCTATACTAGCAGGCGG 59.809 47.826 0.00 0.00 0.00 6.13
843 846 4.421033 TCGATTTCTATACTAGCAGGCG 57.579 45.455 0.00 0.00 0.00 5.52
844 847 5.402867 GTGTTCGATTTCTATACTAGCAGGC 59.597 44.000 0.00 0.00 0.00 4.85
845 848 5.921408 GGTGTTCGATTTCTATACTAGCAGG 59.079 44.000 0.00 0.00 0.00 4.85
846 849 6.504398 TGGTGTTCGATTTCTATACTAGCAG 58.496 40.000 0.00 0.00 0.00 4.24
847 850 6.459670 TGGTGTTCGATTTCTATACTAGCA 57.540 37.500 0.00 0.00 0.00 3.49
852 865 5.523916 AGCACATGGTGTTCGATTTCTATAC 59.476 40.000 0.00 0.00 35.75 1.47
854 867 4.517285 AGCACATGGTGTTCGATTTCTAT 58.483 39.130 0.00 0.00 35.75 1.98
871 889 0.823460 TGGATATGAGCACGAGCACA 59.177 50.000 7.46 7.46 45.26 4.57
943 961 0.742635 CGGCTCTCTTTTCTCTGGCC 60.743 60.000 0.00 0.00 35.33 5.36
952 970 1.070786 TCGTTTGGCGGCTCTCTTT 59.929 52.632 11.43 0.00 41.72 2.52
954 972 2.048127 GTCGTTTGGCGGCTCTCT 60.048 61.111 11.43 0.00 42.76 3.10
955 973 3.479269 CGTCGTTTGGCGGCTCTC 61.479 66.667 11.43 0.00 44.09 3.20
972 990 2.125633 GAAGAGGGACGAACGCCC 60.126 66.667 15.11 15.11 46.40 6.13
973 991 1.153804 GAGAAGAGGGACGAACGCC 60.154 63.158 0.00 0.00 0.00 5.68
974 992 0.456995 CAGAGAAGAGGGACGAACGC 60.457 60.000 0.00 0.00 0.00 4.84
975 993 0.456995 GCAGAGAAGAGGGACGAACG 60.457 60.000 0.00 0.00 0.00 3.95
976 994 0.108567 GGCAGAGAAGAGGGACGAAC 60.109 60.000 0.00 0.00 0.00 3.95
977 995 1.595993 CGGCAGAGAAGAGGGACGAA 61.596 60.000 0.00 0.00 0.00 3.85
978 996 2.046864 CGGCAGAGAAGAGGGACGA 61.047 63.158 0.00 0.00 0.00 4.20
982 1000 1.544825 TTGGTCGGCAGAGAAGAGGG 61.545 60.000 0.00 0.00 0.00 4.30
1239 1262 2.690734 TAGCAGCGGGAGAGAGGGA 61.691 63.158 0.00 0.00 0.00 4.20
1309 1338 1.376942 CTGCACAGAGAGGGGCAAG 60.377 63.158 0.00 0.00 35.59 4.01
1310 1339 2.752358 CTGCACAGAGAGGGGCAA 59.248 61.111 0.00 0.00 35.59 4.52
1311 1340 3.324930 CCTGCACAGAGAGGGGCA 61.325 66.667 0.00 0.00 34.66 5.36
1312 1341 3.322318 GACCTGCACAGAGAGGGGC 62.322 68.421 0.00 0.00 33.16 5.80
1313 1342 2.985456 GACCTGCACAGAGAGGGG 59.015 66.667 0.00 0.00 33.16 4.79
1317 1346 1.323271 GGGATCGACCTGCACAGAGA 61.323 60.000 0.00 0.00 38.98 3.10
1572 1603 9.605275 CCAACTGATTGAAATTAGACTGATAGA 57.395 33.333 2.17 0.00 38.15 1.98
1618 1649 5.006358 CCATTTACAGTGCTCGGTGTAATAC 59.994 44.000 1.66 0.00 38.58 1.89
1625 1656 3.007614 AGTTACCATTTACAGTGCTCGGT 59.992 43.478 0.00 0.00 0.00 4.69
1627 1658 3.181520 GCAGTTACCATTTACAGTGCTCG 60.182 47.826 0.00 0.00 0.00 5.03
1631 1662 7.589395 TGTTATTGCAGTTACCATTTACAGTG 58.411 34.615 0.00 0.00 0.00 3.66
1632 1663 7.753309 TGTTATTGCAGTTACCATTTACAGT 57.247 32.000 0.00 0.00 0.00 3.55
1683 1715 4.898829 TCATTTCTATCCATTTGCCGTG 57.101 40.909 0.00 0.00 0.00 4.94
1684 1716 5.360714 ACATTCATTTCTATCCATTTGCCGT 59.639 36.000 0.00 0.00 0.00 5.68
1730 1762 7.504403 ACTTTCACAGGAATGGATGTATCTAG 58.496 38.462 0.00 0.00 33.66 2.43
1737 1769 6.458751 CGGAATTACTTTCACAGGAATGGATG 60.459 42.308 0.00 0.00 36.00 3.51
1940 1983 1.538276 GAAATGCGCCACGAATTCAG 58.462 50.000 4.18 1.11 33.56 3.02
1996 2039 4.202441 CTCTAGCATAATTGGCACAGGTT 58.798 43.478 6.69 0.00 42.39 3.50
2119 2165 8.840867 GCAAATAAAAGTTAGATGTCGACAAAG 58.159 33.333 24.13 0.00 0.00 2.77
2204 2250 9.715121 TTATTATTTACTTTGTCACGGTCTTCT 57.285 29.630 0.00 0.00 0.00 2.85
2300 2346 1.376037 GACAAACGCCTAGCCAGCT 60.376 57.895 0.00 0.00 0.00 4.24
2342 2388 6.106003 CAGTGTGTATACTTAGCCATCAACA 58.894 40.000 4.17 0.00 0.00 3.33
2414 2460 1.134788 CACCATTCCCACGAGTCTACC 60.135 57.143 0.00 0.00 0.00 3.18
2722 2768 3.181493 GGTGATTGCACATCAAGATGGAC 60.181 47.826 14.04 6.37 46.96 4.02
3012 3072 3.873361 ACATACACATCAATTGCCTCTCG 59.127 43.478 0.00 0.00 0.00 4.04
3363 3425 2.068519 TGCAGCAAGTATCACAAGTCG 58.931 47.619 0.00 0.00 0.00 4.18
3389 3451 9.382275 AGTCACATTTTAATGGAAATAAATGGC 57.618 29.630 7.33 0.00 40.52 4.40
4085 4151 6.464222 TCTCAAATACTTTCAGGGTGTACTG 58.536 40.000 0.00 0.00 39.84 2.74
4420 4489 0.596859 GCCAATCGTACCGTCCTAGC 60.597 60.000 0.00 0.00 0.00 3.42
4967 5037 5.289595 TCTCCACTGCATATACTTTTAGCG 58.710 41.667 0.00 0.00 0.00 4.26
5369 5440 5.313520 TGACCTGTTCATAATTGCATGTG 57.686 39.130 0.00 0.00 0.00 3.21
5683 5755 4.946784 ATCGAAACTTTGCAGATACCAC 57.053 40.909 0.00 0.00 0.00 4.16
5684 5756 5.972935 TCTATCGAAACTTTGCAGATACCA 58.027 37.500 0.00 0.00 0.00 3.25
5702 5774 2.863137 CCAAGTCGCTTCAAGCTCTATC 59.137 50.000 8.02 0.00 39.60 2.08
6281 6356 6.606796 ACCTGGCAATGTTCATAATATGTCAA 59.393 34.615 0.00 0.00 0.00 3.18
6638 6735 7.095017 CCAGGTTCTAAGATCTGTTTCTTTGAC 60.095 40.741 0.00 0.00 37.26 3.18
6870 6978 0.680618 CCACTTGCTTTGCATCCCAA 59.319 50.000 0.00 0.00 38.76 4.12
6944 7135 8.872845 CAACTAAATTGTTATTTCCCAAGCATC 58.127 33.333 0.00 0.00 35.61 3.91
6967 7158 2.484264 GGCACATAGGAGTGACAACAAC 59.516 50.000 0.00 0.00 46.90 3.32
6968 7159 2.778299 GGCACATAGGAGTGACAACAA 58.222 47.619 0.00 0.00 46.90 2.83
6969 7160 2.472695 GGCACATAGGAGTGACAACA 57.527 50.000 0.00 0.00 46.90 3.33
7115 7309 8.307483 CCTCTAAACAATCACGTATATCCTCAT 58.693 37.037 0.00 0.00 0.00 2.90
7116 7310 7.287005 ACCTCTAAACAATCACGTATATCCTCA 59.713 37.037 0.00 0.00 0.00 3.86
7121 7315 8.689061 TGTACACCTCTAAACAATCACGTATAT 58.311 33.333 0.00 0.00 0.00 0.86
7162 7374 1.875813 GACGCCATCAGAGAGCACG 60.876 63.158 0.00 0.00 0.00 5.34
7164 7376 1.697284 ATAGACGCCATCAGAGAGCA 58.303 50.000 0.00 0.00 0.00 4.26
7171 7383 2.168313 TCAGCAAGAATAGACGCCATCA 59.832 45.455 0.00 0.00 0.00 3.07
7175 7387 2.586258 TCTCAGCAAGAATAGACGCC 57.414 50.000 0.00 0.00 0.00 5.68
7220 7441 8.199449 CCATCCAGCAAGAATACATGTTTAATT 58.801 33.333 2.30 0.00 0.00 1.40
7224 7445 5.126061 GTCCATCCAGCAAGAATACATGTTT 59.874 40.000 2.30 0.00 0.00 2.83
7270 7554 1.342174 CAACTATCATGGGCAATGGGC 59.658 52.381 1.15 0.00 43.74 5.36
7271 7555 2.948115 TCAACTATCATGGGCAATGGG 58.052 47.619 1.15 0.00 36.86 4.00
7273 7557 7.170320 GCTTTTATTCAACTATCATGGGCAATG 59.830 37.037 0.00 0.00 37.66 2.82
7275 7559 6.380846 AGCTTTTATTCAACTATCATGGGCAA 59.619 34.615 0.00 0.00 0.00 4.52
7276 7560 5.893255 AGCTTTTATTCAACTATCATGGGCA 59.107 36.000 0.00 0.00 0.00 5.36
7277 7561 6.264067 AGAGCTTTTATTCAACTATCATGGGC 59.736 38.462 0.00 0.00 0.00 5.36
7278 7562 7.814264 AGAGCTTTTATTCAACTATCATGGG 57.186 36.000 0.00 0.00 0.00 4.00
7285 7569 9.975218 AGGGAAATTAGAGCTTTTATTCAACTA 57.025 29.630 0.00 0.00 0.00 2.24
7286 7570 8.743714 CAGGGAAATTAGAGCTTTTATTCAACT 58.256 33.333 0.00 0.00 0.00 3.16
7287 7571 7.489435 GCAGGGAAATTAGAGCTTTTATTCAAC 59.511 37.037 0.00 0.00 0.00 3.18
7288 7572 7.178274 TGCAGGGAAATTAGAGCTTTTATTCAA 59.822 33.333 0.00 0.00 0.00 2.69
7289 7573 6.663093 TGCAGGGAAATTAGAGCTTTTATTCA 59.337 34.615 0.00 0.00 0.00 2.57
7290 7574 7.100458 TGCAGGGAAATTAGAGCTTTTATTC 57.900 36.000 0.00 0.00 0.00 1.75
7291 7575 7.480760 TTGCAGGGAAATTAGAGCTTTTATT 57.519 32.000 0.00 0.00 0.00 1.40
7292 7576 7.480760 TTTGCAGGGAAATTAGAGCTTTTAT 57.519 32.000 0.00 0.00 0.00 1.40
7293 7577 6.909550 TTTGCAGGGAAATTAGAGCTTTTA 57.090 33.333 0.00 0.00 0.00 1.52
7294 7578 5.806654 TTTGCAGGGAAATTAGAGCTTTT 57.193 34.783 0.00 0.00 0.00 2.27
7295 7579 5.806654 TTTTGCAGGGAAATTAGAGCTTT 57.193 34.783 0.00 0.00 0.00 3.51
7296 7580 5.806654 TTTTTGCAGGGAAATTAGAGCTT 57.193 34.783 0.00 0.00 0.00 3.74
7349 7633 7.778083 ACTAATGTGTTGTGAGAATATACCGA 58.222 34.615 0.00 0.00 0.00 4.69
7454 7742 6.566564 AACACAAAGTTGCAGATATTCTGACG 60.567 38.462 8.65 0.00 42.16 4.35
7490 7778 9.981114 AACAAGTTTTCCTCTAATTTTGGTATG 57.019 29.630 0.00 0.00 0.00 2.39
7512 7800 9.677567 GATCTTCTGCAATACTAAAACAAACAA 57.322 29.630 0.00 0.00 0.00 2.83
7521 7809 8.043113 AGAACATGTGATCTTCTGCAATACTAA 58.957 33.333 0.00 0.00 0.00 2.24
7562 7850 5.049167 TGATTCGGATTAATTGCAAATGCC 58.951 37.500 1.71 0.02 41.18 4.40
7691 7979 8.837389 GGAGTCGGAGTAAATAAAATTGCTAAT 58.163 33.333 0.00 0.00 0.00 1.73
7692 7980 7.010738 CGGAGTCGGAGTAAATAAAATTGCTAA 59.989 37.037 0.00 0.00 0.00 3.09
7693 7981 6.477688 CGGAGTCGGAGTAAATAAAATTGCTA 59.522 38.462 0.00 0.00 0.00 3.49
7694 7982 5.293569 CGGAGTCGGAGTAAATAAAATTGCT 59.706 40.000 0.00 0.00 0.00 3.91
7695 7983 5.064325 ACGGAGTCGGAGTAAATAAAATTGC 59.936 40.000 4.48 0.00 29.74 3.56
7696 7984 6.091713 ACACGGAGTCGGAGTAAATAAAATTG 59.908 38.462 4.48 0.00 41.61 2.32
7697 7985 6.168389 ACACGGAGTCGGAGTAAATAAAATT 58.832 36.000 4.48 0.00 41.61 1.82
7698 7986 5.727434 ACACGGAGTCGGAGTAAATAAAAT 58.273 37.500 4.48 0.00 41.61 1.82
7699 7987 5.138125 ACACGGAGTCGGAGTAAATAAAA 57.862 39.130 4.48 0.00 41.61 1.52
7700 7988 4.789012 ACACGGAGTCGGAGTAAATAAA 57.211 40.909 4.48 0.00 41.61 1.40
7701 7989 4.789012 AACACGGAGTCGGAGTAAATAA 57.211 40.909 4.48 0.00 41.61 1.40
7702 7990 5.357878 ACATAACACGGAGTCGGAGTAAATA 59.642 40.000 4.48 0.00 41.61 1.40
7703 7991 4.159135 ACATAACACGGAGTCGGAGTAAAT 59.841 41.667 4.48 0.00 41.61 1.40
7704 7992 3.507233 ACATAACACGGAGTCGGAGTAAA 59.493 43.478 4.48 0.00 41.61 2.01
7705 7993 3.084039 ACATAACACGGAGTCGGAGTAA 58.916 45.455 4.48 0.00 41.61 2.24
7706 7994 2.715046 ACATAACACGGAGTCGGAGTA 58.285 47.619 4.48 0.00 41.61 2.59
7707 7995 1.542492 ACATAACACGGAGTCGGAGT 58.458 50.000 4.48 0.00 41.61 3.85
7708 7996 2.527100 GAACATAACACGGAGTCGGAG 58.473 52.381 4.48 0.00 41.61 4.63
7709 7997 1.203052 GGAACATAACACGGAGTCGGA 59.797 52.381 4.48 0.00 41.61 4.55
7710 7998 1.636988 GGAACATAACACGGAGTCGG 58.363 55.000 0.00 0.00 41.61 4.79
7711 7999 1.636988 GGGAACATAACACGGAGTCG 58.363 55.000 0.00 0.00 41.61 4.18
7712 8000 1.553704 AGGGGAACATAACACGGAGTC 59.446 52.381 0.00 0.00 41.61 3.36
7714 8002 2.781681 AAGGGGAACATAACACGGAG 57.218 50.000 0.00 0.00 0.00 4.63
7715 8003 3.055675 CACTAAGGGGAACATAACACGGA 60.056 47.826 0.00 0.00 0.00 4.69
7716 8004 3.055675 TCACTAAGGGGAACATAACACGG 60.056 47.826 0.00 0.00 0.00 4.94
7717 8005 4.196626 TCACTAAGGGGAACATAACACG 57.803 45.455 0.00 0.00 0.00 4.49
7718 8006 8.747538 ATATTTCACTAAGGGGAACATAACAC 57.252 34.615 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.