Multiple sequence alignment - TraesCS6A01G109000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G109000 chr6A 100.000 5448 0 0 1 5448 77789902 77784455 0.000000e+00 10061.0
1 TraesCS6A01G109000 chr6A 100.000 40 0 0 5216 5255 77784640 77784601 2.100000e-09 75.0
2 TraesCS6A01G109000 chr6A 100.000 40 0 0 5263 5302 77784687 77784648 2.100000e-09 75.0
3 TraesCS6A01G109000 chr6D 91.686 2105 82 37 2747 4771 61143138 61141047 0.000000e+00 2832.0
4 TraesCS6A01G109000 chr6D 91.071 952 42 20 791 1721 61144101 61143172 0.000000e+00 1247.0
5 TraesCS6A01G109000 chr6D 90.390 385 34 3 5047 5430 61140875 61140493 2.270000e-138 503.0
6 TraesCS6A01G109000 chr6D 92.857 350 16 7 130 472 61144882 61144535 2.930000e-137 499.0
7 TraesCS6A01G109000 chr6D 92.857 112 6 2 4945 5054 450262832 450262721 1.570000e-35 161.0
8 TraesCS6A01G109000 chr6D 92.157 102 8 0 4945 5046 128316221 128316120 1.580000e-30 145.0
9 TraesCS6A01G109000 chr6D 88.696 115 11 2 4942 5054 4235811 4235925 7.360000e-29 139.0
10 TraesCS6A01G109000 chr6D 89.815 108 9 2 4945 5050 136469545 136469652 2.650000e-28 137.0
11 TraesCS6A01G109000 chr6D 90.291 103 9 1 4945 5046 178852319 178852217 3.420000e-27 134.0
12 TraesCS6A01G109000 chr6D 88.393 112 11 2 4945 5054 357016302 357016191 3.420000e-27 134.0
13 TraesCS6A01G109000 chr6D 88.889 108 10 2 4949 5054 227488094 227487987 1.230000e-26 132.0
14 TraesCS6A01G109000 chr6D 97.959 49 1 0 4850 4898 61141032 61140984 9.720000e-13 86.1
15 TraesCS6A01G109000 chr6D 100.000 40 0 0 5263 5302 61140706 61140667 2.100000e-09 75.0
16 TraesCS6A01G109000 chr6B 91.430 2077 99 21 2696 4703 135120025 135117959 0.000000e+00 2776.0
17 TraesCS6A01G109000 chr6B 85.820 945 67 39 796 1721 135120914 135120018 0.000000e+00 941.0
18 TraesCS6A01G109000 chr6B 93.458 107 6 1 4945 5050 706073916 706074022 2.030000e-34 158.0
19 TraesCS6A01G109000 chr6B 87.097 62 5 3 4512 4570 708680304 708680365 3.520000e-07 67.6
20 TraesCS6A01G109000 chr1A 98.770 976 12 0 1721 2696 482776757 482775782 0.000000e+00 1736.0
21 TraesCS6A01G109000 chr1A 91.892 111 5 3 4946 5054 301777956 301777848 9.450000e-33 152.0
22 TraesCS6A01G109000 chr1A 92.233 103 7 1 4945 5046 12787433 12787535 1.580000e-30 145.0
23 TraesCS6A01G109000 chr1A 92.157 102 8 0 4945 5046 498452667 498452768 1.580000e-30 145.0
24 TraesCS6A01G109000 chr1A 88.430 121 10 4 4937 5054 500974868 500974749 5.690000e-30 143.0
25 TraesCS6A01G109000 chr1A 87.805 123 12 3 4946 5065 208212533 208212655 2.050000e-29 141.0
26 TraesCS6A01G109000 chr2B 98.055 977 18 1 1720 2695 117071627 117072603 0.000000e+00 1698.0
27 TraesCS6A01G109000 chr2B 97.949 975 20 0 1721 2695 256325879 256324905 0.000000e+00 1690.0
28 TraesCS6A01G109000 chr2B 91.228 114 8 2 4943 5054 794534958 794534845 2.630000e-33 154.0
29 TraesCS6A01G109000 chr7A 95.984 996 36 3 1713 2704 14667353 14668348 0.000000e+00 1615.0
30 TraesCS6A01G109000 chr7A 94.990 978 43 5 1720 2695 713999654 713998681 0.000000e+00 1530.0
31 TraesCS6A01G109000 chr7A 92.857 112 6 2 4945 5054 133633282 133633171 1.570000e-35 161.0
32 TraesCS6A01G109000 chr7A 97.222 36 1 0 5228 5263 427616349 427616314 1.640000e-05 62.1
33 TraesCS6A01G109000 chr7A 100.000 28 0 0 5275 5302 427616349 427616322 1.000000e-02 52.8
34 TraesCS6A01G109000 chr3D 94.995 999 45 5 1710 2705 583585498 583586494 0.000000e+00 1563.0
35 TraesCS6A01G109000 chr3D 89.457 313 19 6 377 688 24162124 24161825 3.080000e-102 383.0
36 TraesCS6A01G109000 chr3D 91.304 115 8 2 4942 5054 141460721 141460835 7.310000e-34 156.0
37 TraesCS6A01G109000 chr3D 86.923 130 12 5 4941 5066 463812154 463812026 2.050000e-29 141.0
38 TraesCS6A01G109000 chr3D 85.567 97 13 1 5166 5262 508395188 508395283 3.470000e-17 100.0
39 TraesCS6A01G109000 chr3D 83.696 92 11 4 5173 5263 26207337 26207425 3.500000e-12 84.2
40 TraesCS6A01G109000 chr3A 95.199 979 44 3 1722 2698 692982338 692983315 0.000000e+00 1544.0
41 TraesCS6A01G109000 chr3A 91.304 115 7 3 4942 5054 12239982 12239869 2.630000e-33 154.0
42 TraesCS6A01G109000 chr4B 95.189 977 46 1 1719 2695 497108761 497109736 0.000000e+00 1543.0
43 TraesCS6A01G109000 chr1D 94.223 1004 50 8 1722 2723 108828222 108827225 0.000000e+00 1526.0
44 TraesCS6A01G109000 chr1D 90.265 113 8 3 4945 5054 470620845 470620957 1.580000e-30 145.0
45 TraesCS6A01G109000 chr1D 91.176 102 8 1 4946 5046 116548340 116548441 2.650000e-28 137.0
46 TraesCS6A01G109000 chr1D 89.189 111 10 2 4946 5054 184046405 184046515 2.650000e-28 137.0
47 TraesCS6A01G109000 chr1D 90.385 104 8 2 4945 5046 307235407 307235510 9.520000e-28 135.0
48 TraesCS6A01G109000 chr1D 86.777 121 13 3 4946 5063 153773192 153773072 1.230000e-26 132.0
49 TraesCS6A01G109000 chr3B 89.776 313 18 6 377 688 201489675 201489376 6.620000e-104 388.0
50 TraesCS6A01G109000 chr3B 85.000 100 8 6 5166 5262 671153739 671153834 1.620000e-15 95.3
51 TraesCS6A01G109000 chrUn 89.677 310 19 5 377 685 30304475 30304772 3.080000e-102 383.0
52 TraesCS6A01G109000 chrUn 89.457 313 19 6 377 688 425830917 425830618 3.080000e-102 383.0
53 TraesCS6A01G109000 chrUn 89.623 106 9 2 4942 5046 112678689 112678793 3.420000e-27 134.0
54 TraesCS6A01G109000 chrUn 90.196 102 8 1 4956 5055 31381282 31381181 1.230000e-26 132.0
55 TraesCS6A01G109000 chrUn 88.288 111 11 2 4946 5054 99244824 99244934 1.230000e-26 132.0
56 TraesCS6A01G109000 chrUn 89.899 99 10 0 4944 5042 304758210 304758308 1.590000e-25 128.0
57 TraesCS6A01G109000 chrUn 89.899 99 10 0 4944 5042 310445333 310445431 1.590000e-25 128.0
58 TraesCS6A01G109000 chrUn 89.216 102 9 2 4946 5046 124590827 124590727 5.730000e-25 126.0
59 TraesCS6A01G109000 chrUn 89.109 101 11 0 4946 5046 321243257 321243157 5.730000e-25 126.0
60 TraesCS6A01G109000 chrUn 89.109 101 11 0 4946 5046 322420731 322420831 5.730000e-25 126.0
61 TraesCS6A01G109000 chrUn 88.350 103 11 1 4945 5046 49634090 49633988 7.410000e-24 122.0
62 TraesCS6A01G109000 chr7B 89.677 310 18 6 377 685 662741070 662741366 3.080000e-102 383.0
63 TraesCS6A01G109000 chr5D 89.457 313 19 6 377 688 503327451 503327152 3.080000e-102 383.0
64 TraesCS6A01G109000 chr5D 91.964 112 7 1 4945 5054 254343115 254343004 7.310000e-34 156.0
65 TraesCS6A01G109000 chr5D 90.991 111 8 2 4946 5054 492723288 492723178 1.220000e-31 148.0
66 TraesCS6A01G109000 chr5D 89.256 121 8 5 4946 5061 12925250 12925370 4.400000e-31 147.0
67 TraesCS6A01G109000 chr5D 90.090 111 9 2 4946 5054 118840568 118840458 5.690000e-30 143.0
68 TraesCS6A01G109000 chr5D 88.793 116 10 2 4941 5054 472997122 472997236 7.360000e-29 139.0
69 TraesCS6A01G109000 chr4A 89.457 313 19 6 377 688 141126114 141125815 3.080000e-102 383.0
70 TraesCS6A01G109000 chr4A 88.281 128 10 5 4946 5068 589013609 589013482 1.220000e-31 148.0
71 TraesCS6A01G109000 chr4A 82.243 107 15 4 5166 5269 42265520 42265415 7.520000e-14 89.8
72 TraesCS6A01G109000 chr2D 89.457 313 19 6 377 688 630263821 630263522 3.080000e-102 383.0
73 TraesCS6A01G109000 chr2D 91.964 112 7 2 4945 5054 391295280 391295391 7.310000e-34 156.0
74 TraesCS6A01G109000 chr2A 89.490 314 18 7 377 688 419792718 419792418 3.080000e-102 383.0
75 TraesCS6A01G109000 chr5B 93.458 107 6 1 4945 5050 455263296 455263402 2.030000e-34 158.0
76 TraesCS6A01G109000 chr4D 90.090 111 9 2 4946 5054 55352441 55352551 5.690000e-30 143.0
77 TraesCS6A01G109000 chr4D 90.090 111 9 2 4946 5054 93458784 93458894 5.690000e-30 143.0
78 TraesCS6A01G109000 chr4D 91.429 105 8 1 4943 5046 367720662 367720558 5.690000e-30 143.0
79 TraesCS6A01G109000 chr4D 89.189 111 10 2 4946 5054 27156537 27156427 2.650000e-28 137.0
80 TraesCS6A01G109000 chr4D 90.476 105 9 1 4942 5046 494875909 494876012 2.650000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G109000 chr6A 77784455 77789902 5447 True 10061.000000 10061 100.000000 1 5448 1 chr6A.!!$R1 5447
1 TraesCS6A01G109000 chr6D 61140493 61144882 4389 True 873.683333 2832 93.993833 130 5430 6 chr6D.!!$R6 5300
2 TraesCS6A01G109000 chr6B 135117959 135120914 2955 True 1858.500000 2776 88.625000 796 4703 2 chr6B.!!$R1 3907
3 TraesCS6A01G109000 chr1A 482775782 482776757 975 True 1736.000000 1736 98.770000 1721 2696 1 chr1A.!!$R2 975
4 TraesCS6A01G109000 chr2B 117071627 117072603 976 False 1698.000000 1698 98.055000 1720 2695 1 chr2B.!!$F1 975
5 TraesCS6A01G109000 chr2B 256324905 256325879 974 True 1690.000000 1690 97.949000 1721 2695 1 chr2B.!!$R1 974
6 TraesCS6A01G109000 chr7A 14667353 14668348 995 False 1615.000000 1615 95.984000 1713 2704 1 chr7A.!!$F1 991
7 TraesCS6A01G109000 chr7A 713998681 713999654 973 True 1530.000000 1530 94.990000 1720 2695 1 chr7A.!!$R2 975
8 TraesCS6A01G109000 chr3D 583585498 583586494 996 False 1563.000000 1563 94.995000 1710 2705 1 chr3D.!!$F4 995
9 TraesCS6A01G109000 chr3A 692982338 692983315 977 False 1544.000000 1544 95.199000 1722 2698 1 chr3A.!!$F1 976
10 TraesCS6A01G109000 chr4B 497108761 497109736 975 False 1543.000000 1543 95.189000 1719 2695 1 chr4B.!!$F1 976
11 TraesCS6A01G109000 chr1D 108827225 108828222 997 True 1526.000000 1526 94.223000 1722 2723 1 chr1D.!!$R1 1001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 455 0.327576 CCCCACCTCCCATCTTACCT 60.328 60.000 0.00 0.0 0.00 3.08 F
1398 1559 1.066071 GGCCCTTCTCTCCACACTTAC 60.066 57.143 0.00 0.0 0.00 2.34 F
1418 1579 0.598680 GTGCGCTGCCACTAGATAGG 60.599 60.000 9.73 0.0 33.02 2.57 F
1557 1739 0.742990 TTCGCAGCCATAAACCTCCG 60.743 55.000 0.00 0.0 0.00 4.63 F
1575 1757 1.145759 CGTCGATCACCATGAACCCG 61.146 60.000 0.00 0.0 0.00 5.28 F
3104 3348 1.305930 ACGGCGGCCTCAAGAAATTC 61.306 55.000 18.34 0.0 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1411 1572 0.106167 AGCCGCCAGTCACCTATCTA 60.106 55.000 0.00 0.0 0.00 1.98 R
2864 3057 1.417890 AGCTGTAGAGTGCACCAAAGT 59.582 47.619 14.63 0.0 0.00 2.66 R
3104 3348 3.871594 CGGAAGTTATAAGGCTGTTCCTG 59.128 47.826 0.00 0.0 46.94 3.86 R
3509 3758 2.437413 GTGGAGAAATCCAGTGAACCC 58.563 52.381 0.00 0.0 41.00 4.11 R
3633 3882 5.108385 ACTTCGTGCAAAAAGGTTATCAG 57.892 39.130 12.51 0.0 0.00 2.90 R
5034 5335 0.399075 TCCCTCCGAAAACTTGTCCC 59.601 55.000 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.055667 TGAGATAGCCTCATCGTTTATTTCT 57.944 36.000 0.00 0.00 46.38 2.52
37 38 7.500992 TGAGATAGCCTCATCGTTTATTTCTT 58.499 34.615 0.00 0.00 46.38 2.52
38 39 7.987458 TGAGATAGCCTCATCGTTTATTTCTTT 59.013 33.333 0.00 0.00 46.38 2.52
39 40 8.738645 AGATAGCCTCATCGTTTATTTCTTTT 57.261 30.769 0.00 0.00 0.00 2.27
40 41 9.178758 AGATAGCCTCATCGTTTATTTCTTTTT 57.821 29.630 0.00 0.00 0.00 1.94
68 69 5.587388 AAACATGTATTCTTGCTGGATGG 57.413 39.130 0.00 0.00 0.00 3.51
69 70 4.508551 ACATGTATTCTTGCTGGATGGA 57.491 40.909 0.00 0.00 0.00 3.41
70 71 4.202441 ACATGTATTCTTGCTGGATGGAC 58.798 43.478 0.00 0.00 0.00 4.02
71 72 4.080129 ACATGTATTCTTGCTGGATGGACT 60.080 41.667 0.00 0.00 0.00 3.85
72 73 4.142609 TGTATTCTTGCTGGATGGACTC 57.857 45.455 0.00 0.00 0.00 3.36
73 74 2.725221 ATTCTTGCTGGATGGACTCC 57.275 50.000 0.00 0.00 45.19 3.85
74 75 0.620556 TTCTTGCTGGATGGACTCCC 59.379 55.000 0.00 0.00 44.23 4.30
75 76 1.225704 CTTGCTGGATGGACTCCCC 59.774 63.158 0.00 0.00 44.23 4.81
83 84 4.995058 TGGACTCCCCACCCCACC 62.995 72.222 0.00 0.00 40.82 4.61
110 111 3.444850 GCCCATTGCCCATGATAGT 57.555 52.632 0.00 0.00 34.31 2.12
111 112 1.708341 GCCCATTGCCCATGATAGTT 58.292 50.000 0.00 0.00 34.31 2.24
112 113 1.342174 GCCCATTGCCCATGATAGTTG 59.658 52.381 0.00 0.00 34.31 3.16
113 114 2.948115 CCCATTGCCCATGATAGTTGA 58.052 47.619 0.00 0.00 34.31 3.18
114 115 3.298619 CCCATTGCCCATGATAGTTGAA 58.701 45.455 0.00 0.00 34.31 2.69
115 116 3.899360 CCCATTGCCCATGATAGTTGAAT 59.101 43.478 0.00 0.00 34.31 2.57
116 117 5.078949 CCCATTGCCCATGATAGTTGAATA 58.921 41.667 0.00 0.00 34.31 1.75
117 118 5.539574 CCCATTGCCCATGATAGTTGAATAA 59.460 40.000 0.00 0.00 34.31 1.40
118 119 6.041865 CCCATTGCCCATGATAGTTGAATAAA 59.958 38.462 0.00 0.00 34.31 1.40
119 120 7.418827 CCCATTGCCCATGATAGTTGAATAAAA 60.419 37.037 0.00 0.00 34.31 1.52
120 121 7.654520 CCATTGCCCATGATAGTTGAATAAAAG 59.345 37.037 0.00 0.00 34.31 2.27
121 122 6.147864 TGCCCATGATAGTTGAATAAAAGC 57.852 37.500 0.00 0.00 0.00 3.51
122 123 5.893255 TGCCCATGATAGTTGAATAAAAGCT 59.107 36.000 0.00 0.00 0.00 3.74
123 124 6.039717 TGCCCATGATAGTTGAATAAAAGCTC 59.960 38.462 0.00 0.00 0.00 4.09
124 125 6.264067 GCCCATGATAGTTGAATAAAAGCTCT 59.736 38.462 0.00 0.00 0.00 4.09
125 126 7.445402 GCCCATGATAGTTGAATAAAAGCTCTA 59.555 37.037 0.00 0.00 0.00 2.43
126 127 9.342308 CCCATGATAGTTGAATAAAAGCTCTAA 57.658 33.333 0.00 0.00 0.00 2.10
133 134 8.885693 AGTTGAATAAAAGCTCTAATTTCCCT 57.114 30.769 0.00 0.00 0.00 4.20
134 135 8.743714 AGTTGAATAAAAGCTCTAATTTCCCTG 58.256 33.333 0.00 0.00 0.00 4.45
135 136 7.100458 TGAATAAAAGCTCTAATTTCCCTGC 57.900 36.000 0.00 0.00 0.00 4.85
291 296 7.119116 ACACATTTTTACGTCAGAATATCTGCA 59.881 33.333 0.00 0.00 43.95 4.41
384 389 4.022589 ACATGTTCTTGCAACATCCTTGAG 60.023 41.667 0.00 0.00 38.69 3.02
386 391 1.538047 TCTTGCAACATCCTTGAGGC 58.462 50.000 0.00 0.00 34.44 4.70
401 406 4.812626 CCTTGAGGCATTTGCAATTAATCC 59.187 41.667 0.00 0.00 44.36 3.01
410 415 7.384660 GGCATTTGCAATTAATCCGAATCAATA 59.615 33.333 0.00 0.00 44.36 1.90
450 455 0.327576 CCCCACCTCCCATCTTACCT 60.328 60.000 0.00 0.00 0.00 3.08
539 586 6.679327 AGCAATTTTATTTACTCCGACTCC 57.321 37.500 0.00 0.00 0.00 3.85
540 587 5.293569 AGCAATTTTATTTACTCCGACTCCG 59.706 40.000 0.00 0.00 0.00 4.63
576 623 9.289782 CCCCTTAGTGAAATATTAATCCTCAAG 57.710 37.037 0.00 0.00 0.00 3.02
678 725 8.213679 ACATCCTTTAGCTAAGCATATCAAAGA 58.786 33.333 6.24 0.00 32.19 2.52
679 726 9.228949 CATCCTTTAGCTAAGCATATCAAAGAT 57.771 33.333 6.24 0.00 32.19 2.40
687 734 9.790344 AGCTAAGCATATCAAAGATAACTTCAT 57.210 29.630 8.18 0.00 35.05 2.57
730 777 5.255687 TGTGCATGTGTGATTCCTTTAGAT 58.744 37.500 0.00 0.00 0.00 1.98
731 778 5.711506 TGTGCATGTGTGATTCCTTTAGATT 59.288 36.000 0.00 0.00 0.00 2.40
774 821 9.694137 AGTATTAGAGTAATATTTTGACCGAGC 57.306 33.333 0.00 0.00 33.60 5.03
819 945 3.071892 TCGTCACCCCACTTTTATGTTCT 59.928 43.478 0.00 0.00 0.00 3.01
820 946 4.283978 TCGTCACCCCACTTTTATGTTCTA 59.716 41.667 0.00 0.00 0.00 2.10
1011 1143 2.063774 CCCCCATACCCCATACGAC 58.936 63.158 0.00 0.00 0.00 4.34
1054 1191 1.529309 GTGGCAATCCTCTCCTCCC 59.471 63.158 0.00 0.00 0.00 4.30
1055 1192 1.694169 TGGCAATCCTCTCCTCCCC 60.694 63.158 0.00 0.00 0.00 4.81
1056 1193 1.385206 GGCAATCCTCTCCTCCCCT 60.385 63.158 0.00 0.00 0.00 4.79
1057 1194 1.414866 GGCAATCCTCTCCTCCCCTC 61.415 65.000 0.00 0.00 0.00 4.30
1058 1195 1.414866 GCAATCCTCTCCTCCCCTCC 61.415 65.000 0.00 0.00 0.00 4.30
1059 1196 1.118356 CAATCCTCTCCTCCCCTCCG 61.118 65.000 0.00 0.00 0.00 4.63
1060 1197 2.956077 AATCCTCTCCTCCCCTCCGC 62.956 65.000 0.00 0.00 0.00 5.54
1122 1283 4.916314 TCGCCGATCTCCCTCCCC 62.916 72.222 0.00 0.00 0.00 4.81
1136 1297 2.115480 CCCCCGCCGAGAGATCTA 59.885 66.667 0.00 0.00 0.00 1.98
1137 1298 2.269529 CCCCCGCCGAGAGATCTAC 61.270 68.421 0.00 0.00 0.00 2.59
1151 1312 4.577246 CTACAGCGAGCGAGGGCC 62.577 72.222 0.00 0.00 41.24 5.80
1398 1559 1.066071 GGCCCTTCTCTCCACACTTAC 60.066 57.143 0.00 0.00 0.00 2.34
1409 1570 3.041351 CACTTACGTGCGCTGCCA 61.041 61.111 9.73 0.00 33.82 4.92
1411 1572 2.738521 CTTACGTGCGCTGCCACT 60.739 61.111 9.73 8.23 33.60 4.00
1412 1573 1.445410 CTTACGTGCGCTGCCACTA 60.445 57.895 9.73 7.53 33.60 2.74
1413 1574 1.413767 CTTACGTGCGCTGCCACTAG 61.414 60.000 9.73 0.00 33.60 2.57
1415 1576 1.663379 TACGTGCGCTGCCACTAGAT 61.663 55.000 9.73 5.25 33.60 1.98
1416 1577 1.065764 CGTGCGCTGCCACTAGATA 59.934 57.895 9.73 0.00 33.60 1.98
1417 1578 0.936764 CGTGCGCTGCCACTAGATAG 60.937 60.000 9.73 0.00 33.60 2.08
1418 1579 0.598680 GTGCGCTGCCACTAGATAGG 60.599 60.000 9.73 0.00 33.02 2.57
1419 1580 1.043116 TGCGCTGCCACTAGATAGGT 61.043 55.000 9.73 0.00 0.00 3.08
1427 1588 1.338337 CCACTAGATAGGTGACTGGCG 59.662 57.143 0.00 0.00 43.88 5.69
1431 1592 1.227380 GATAGGTGACTGGCGGCTG 60.227 63.158 14.42 14.42 43.88 4.85
1471 1637 6.543465 TGGAATACCATGAATTAGCTCTTGTG 59.457 38.462 0.00 0.00 41.77 3.33
1472 1638 6.767902 GGAATACCATGAATTAGCTCTTGTGA 59.232 38.462 0.00 0.00 35.97 3.58
1473 1639 7.446625 GGAATACCATGAATTAGCTCTTGTGAT 59.553 37.037 0.00 0.00 35.97 3.06
1530 1712 9.515226 AATTAGCATACGTTTATACATTGGGAT 57.485 29.630 0.00 0.00 0.00 3.85
1545 1727 1.071605 GGGATATGTCGATTCGCAGC 58.928 55.000 0.00 0.00 0.00 5.25
1557 1739 0.742990 TTCGCAGCCATAAACCTCCG 60.743 55.000 0.00 0.00 0.00 4.63
1575 1757 1.145759 CGTCGATCACCATGAACCCG 61.146 60.000 0.00 0.00 0.00 5.28
1691 1876 1.619526 GCCGCACATTGCAACACATG 61.620 55.000 0.00 0.00 45.36 3.21
1709 1894 5.149273 CACATGAGTATTGCTGTTCAACAC 58.851 41.667 0.00 0.00 37.53 3.32
1711 1896 6.147656 CACATGAGTATTGCTGTTCAACACTA 59.852 38.462 0.00 0.00 42.09 2.74
1712 1897 6.881065 ACATGAGTATTGCTGTTCAACACTAT 59.119 34.615 0.00 0.00 42.09 2.12
1713 1898 8.040727 ACATGAGTATTGCTGTTCAACACTATA 58.959 33.333 0.00 0.00 42.09 1.31
1714 1899 9.049523 CATGAGTATTGCTGTTCAACACTATAT 57.950 33.333 0.00 0.00 42.09 0.86
1727 1912 7.997773 TCAACACTATATATTCTAGGACGCT 57.002 36.000 0.00 0.00 0.00 5.07
1874 2061 1.597797 CTTCGTGCCACATGCCCAAT 61.598 55.000 0.00 0.00 40.16 3.16
1893 2082 7.017551 TGCCCAATAAATACTACTCATCTCCAT 59.982 37.037 0.00 0.00 0.00 3.41
2044 2234 6.209391 AGTTGTAAAAGCATGGCAACTCTATT 59.791 34.615 0.00 0.00 44.10 1.73
2503 2696 1.875963 CGAAAAGCAGTTCGCCCAT 59.124 52.632 8.58 0.00 43.38 4.00
2654 2847 4.408821 GATCCAGGCGTGTGGGCA 62.409 66.667 5.57 0.00 45.36 5.36
2734 2927 2.737252 GCTAGTGTAACAGTGTTCCTGC 59.263 50.000 12.82 9.46 45.68 4.85
2740 2933 6.062095 AGTGTAACAGTGTTCCTGCTTAAAT 58.938 36.000 12.82 0.00 45.68 1.40
2741 2934 6.546034 AGTGTAACAGTGTTCCTGCTTAAATT 59.454 34.615 12.82 0.00 45.68 1.82
2743 2936 7.704899 GTGTAACAGTGTTCCTGCTTAAATTTT 59.295 33.333 12.82 0.00 45.68 1.82
2744 2937 8.254508 TGTAACAGTGTTCCTGCTTAAATTTTT 58.745 29.630 12.82 0.00 45.68 1.94
2826 3019 4.823989 AGAGGGAATGTTCTTGTGTTCTTG 59.176 41.667 0.00 0.00 0.00 3.02
2833 3026 5.975693 TGTTCTTGTGTTCTTGGAAGTTT 57.024 34.783 0.00 0.00 0.00 2.66
2834 3027 5.708948 TGTTCTTGTGTTCTTGGAAGTTTG 58.291 37.500 0.00 0.00 0.00 2.93
2864 3057 7.979444 AAAGACTAGCTTTGCAGTACATAAA 57.021 32.000 10.21 0.00 44.89 1.40
2873 3066 4.497473 TGCAGTACATAAACTTTGGTGC 57.503 40.909 0.00 0.00 0.00 5.01
2890 3083 1.474478 GTGCACTCTACAGCTCTGCTA 59.526 52.381 10.32 0.00 36.40 3.49
3104 3348 1.305930 ACGGCGGCCTCAAGAAATTC 61.306 55.000 18.34 0.00 0.00 2.17
3396 3641 2.096980 GGATAAAGGTGCGTGGTTTAGC 59.903 50.000 0.00 0.00 0.00 3.09
3509 3758 3.826157 TGTAGGATTTGCTGGGTTCTTTG 59.174 43.478 0.00 0.00 0.00 2.77
3672 3923 5.516696 CACGAAGTAATCCTGTCATGTGTAG 59.483 44.000 0.00 0.00 41.61 2.74
3831 4086 9.731519 GCATCGCTTCATTTATTTAAAATATGC 57.268 29.630 0.00 0.00 0.00 3.14
3859 4114 1.717429 CGTTGTCGCTAACTCGTTTGC 60.717 52.381 6.22 6.22 37.82 3.68
3860 4115 0.863144 TTGTCGCTAACTCGTTTGCC 59.137 50.000 9.87 0.00 37.90 4.52
3882 4138 4.154195 CCGTAATGCTAATAGGTGAATGGC 59.846 45.833 0.00 0.00 0.00 4.40
4122 4378 1.938577 CGGATCTGCAAGGATGTGAAG 59.061 52.381 0.00 0.00 0.00 3.02
4134 4390 4.792068 AGGATGTGAAGTTGTTCCTTTCA 58.208 39.130 0.00 0.00 32.94 2.69
4190 4446 7.255801 GCTAGAGCTGAAAGATAGGTAGTGAAT 60.256 40.741 0.00 0.00 38.21 2.57
4195 4451 7.561722 AGCTGAAAGATAGGTAGTGAATGTCTA 59.438 37.037 0.00 0.00 34.07 2.59
4252 4509 5.240844 GTGTTGTTACCCATTCTTGTAGCTT 59.759 40.000 0.00 0.00 0.00 3.74
4279 4539 2.333926 TCTGTTGTGTCGGATTAAGCG 58.666 47.619 0.00 0.00 0.00 4.68
4280 4540 2.066262 CTGTTGTGTCGGATTAAGCGT 58.934 47.619 0.00 0.00 0.00 5.07
4299 4559 2.095668 CGTTGCTGTCTAAGACTCTCGT 60.096 50.000 0.00 0.00 33.15 4.18
4339 4599 6.070995 TGTTTCTCCGGTCAGTGTAAGATTAT 60.071 38.462 0.00 0.00 0.00 1.28
4419 4679 3.631686 TCATGAACCCAACAGAAACACAG 59.368 43.478 0.00 0.00 0.00 3.66
4420 4680 3.358111 TGAACCCAACAGAAACACAGA 57.642 42.857 0.00 0.00 0.00 3.41
4421 4681 3.897239 TGAACCCAACAGAAACACAGAT 58.103 40.909 0.00 0.00 0.00 2.90
4498 4771 7.121315 GGAGATGTTAGTTTGAGCCTTTAATGT 59.879 37.037 0.00 0.00 0.00 2.71
4509 4782 4.993028 AGCCTTTAATGTGGAGGTGTTTA 58.007 39.130 0.00 0.00 33.03 2.01
4589 4879 2.016318 GCTTTTGGCTTTGGCTTTTGT 58.984 42.857 0.00 0.00 38.73 2.83
4677 4978 7.315890 CACCCCATCTTAAAAATCAACTTCTC 58.684 38.462 0.00 0.00 0.00 2.87
4700 5001 7.015098 TCTCCCTACTTCAGATCTCAATGATTC 59.985 40.741 0.00 0.00 35.14 2.52
4720 5021 8.578448 TGATTCAATTGAGTCCATAAATGTGA 57.422 30.769 23.53 3.08 30.74 3.58
4766 5067 3.168773 CCCACGGGGTAGTTTGATG 57.831 57.895 1.28 0.00 38.25 3.07
4767 5068 0.616371 CCCACGGGGTAGTTTGATGA 59.384 55.000 1.28 0.00 38.25 2.92
4768 5069 1.003812 CCCACGGGGTAGTTTGATGAA 59.996 52.381 1.28 0.00 38.25 2.57
4769 5070 2.356741 CCCACGGGGTAGTTTGATGAAT 60.357 50.000 1.28 0.00 38.25 2.57
4770 5071 3.118186 CCCACGGGGTAGTTTGATGAATA 60.118 47.826 1.28 0.00 38.25 1.75
4771 5072 3.875134 CCACGGGGTAGTTTGATGAATAC 59.125 47.826 0.00 0.00 0.00 1.89
4772 5073 4.383770 CCACGGGGTAGTTTGATGAATACT 60.384 45.833 0.00 0.00 0.00 2.12
4773 5074 4.809426 CACGGGGTAGTTTGATGAATACTC 59.191 45.833 0.00 0.00 0.00 2.59
4774 5075 4.715297 ACGGGGTAGTTTGATGAATACTCT 59.285 41.667 0.00 0.00 0.00 3.24
4775 5076 5.163437 ACGGGGTAGTTTGATGAATACTCTC 60.163 44.000 0.00 0.00 0.00 3.20
4776 5077 5.069251 CGGGGTAGTTTGATGAATACTCTCT 59.931 44.000 0.00 0.00 0.00 3.10
4777 5078 6.284459 GGGGTAGTTTGATGAATACTCTCTG 58.716 44.000 0.00 0.00 0.00 3.35
4778 5079 6.098409 GGGGTAGTTTGATGAATACTCTCTGA 59.902 42.308 0.00 0.00 0.00 3.27
4779 5080 6.981559 GGGTAGTTTGATGAATACTCTCTGAC 59.018 42.308 0.00 0.00 0.00 3.51
4780 5081 7.147811 GGGTAGTTTGATGAATACTCTCTGACT 60.148 40.741 0.00 0.00 0.00 3.41
4781 5082 8.254508 GGTAGTTTGATGAATACTCTCTGACTT 58.745 37.037 0.00 0.00 0.00 3.01
4782 5083 9.081997 GTAGTTTGATGAATACTCTCTGACTTG 57.918 37.037 0.00 0.00 0.00 3.16
4783 5084 7.102346 AGTTTGATGAATACTCTCTGACTTGG 58.898 38.462 0.00 0.00 0.00 3.61
4784 5085 6.611613 TTGATGAATACTCTCTGACTTGGT 57.388 37.500 0.00 0.00 0.00 3.67
4785 5086 6.611613 TGATGAATACTCTCTGACTTGGTT 57.388 37.500 0.00 0.00 0.00 3.67
4786 5087 6.401394 TGATGAATACTCTCTGACTTGGTTG 58.599 40.000 0.00 0.00 0.00 3.77
4787 5088 6.211384 TGATGAATACTCTCTGACTTGGTTGA 59.789 38.462 0.00 0.00 0.00 3.18
4788 5089 6.611613 TGAATACTCTCTGACTTGGTTGAT 57.388 37.500 0.00 0.00 0.00 2.57
4798 5099 4.843728 TGACTTGGTTGATAGGGATGAAC 58.156 43.478 0.00 0.00 0.00 3.18
4816 5117 6.661805 GGATGAACAGGGGACTACAAATTTTA 59.338 38.462 0.00 0.00 40.21 1.52
4817 5118 7.177744 GGATGAACAGGGGACTACAAATTTTAA 59.822 37.037 0.00 0.00 40.21 1.52
4818 5119 7.279750 TGAACAGGGGACTACAAATTTTAAC 57.720 36.000 0.00 0.00 40.21 2.01
4819 5120 5.952526 ACAGGGGACTACAAATTTTAACG 57.047 39.130 0.00 0.00 40.21 3.18
4820 5121 5.379187 ACAGGGGACTACAAATTTTAACGT 58.621 37.500 0.00 0.00 40.21 3.99
4821 5122 6.532826 ACAGGGGACTACAAATTTTAACGTA 58.467 36.000 0.00 0.00 40.21 3.57
4822 5123 6.652062 ACAGGGGACTACAAATTTTAACGTAG 59.348 38.462 10.37 10.37 40.21 3.51
4823 5124 6.652062 CAGGGGACTACAAATTTTAACGTAGT 59.348 38.462 15.26 15.26 45.43 2.73
4841 5142 7.875327 ACGTAGTTGGCAATTTTAGGATATT 57.125 32.000 1.92 0.00 37.78 1.28
4842 5143 7.703328 ACGTAGTTGGCAATTTTAGGATATTG 58.297 34.615 1.92 0.00 37.78 1.90
4843 5144 7.554835 ACGTAGTTGGCAATTTTAGGATATTGA 59.445 33.333 1.92 0.00 37.78 2.57
4844 5145 8.567948 CGTAGTTGGCAATTTTAGGATATTGAT 58.432 33.333 1.92 0.00 34.44 2.57
4903 5204 6.155475 TGTTAAGCAAACAAGCAATAAGGT 57.845 33.333 2.46 0.00 45.11 3.50
4904 5205 7.278461 TGTTAAGCAAACAAGCAATAAGGTA 57.722 32.000 2.46 0.00 45.11 3.08
4905 5206 7.717568 TGTTAAGCAAACAAGCAATAAGGTAA 58.282 30.769 2.46 0.00 45.11 2.85
4906 5207 7.865385 TGTTAAGCAAACAAGCAATAAGGTAAG 59.135 33.333 2.46 0.00 45.11 2.34
4907 5208 4.809673 AGCAAACAAGCAATAAGGTAAGC 58.190 39.130 0.00 0.00 36.85 3.09
4908 5209 4.280677 AGCAAACAAGCAATAAGGTAAGCA 59.719 37.500 0.00 0.00 36.85 3.91
4909 5210 4.622740 GCAAACAAGCAATAAGGTAAGCAG 59.377 41.667 0.00 0.00 0.00 4.24
4922 5223 4.211920 AGGTAAGCAGAGGAACTAGCTAG 58.788 47.826 19.44 19.44 46.83 3.42
4923 5224 3.243602 GGTAAGCAGAGGAACTAGCTAGC 60.244 52.174 20.91 6.62 46.83 3.42
4940 5241 1.132640 GCTAGCAAGCCGTCAAACG 59.867 57.895 10.63 0.00 43.40 3.60
4951 5252 2.416431 GCCGTCAAACGTACATACTCCT 60.416 50.000 0.00 0.00 40.58 3.69
4954 5255 4.380233 CCGTCAAACGTACATACTCCTTCT 60.380 45.833 0.00 0.00 40.58 2.85
4957 5258 5.572126 GTCAAACGTACATACTCCTTCTGTC 59.428 44.000 0.00 0.00 0.00 3.51
4958 5259 5.475909 TCAAACGTACATACTCCTTCTGTCT 59.524 40.000 0.00 0.00 0.00 3.41
4959 5260 4.966965 ACGTACATACTCCTTCTGTCTG 57.033 45.455 0.00 0.00 0.00 3.51
4960 5261 4.586884 ACGTACATACTCCTTCTGTCTGA 58.413 43.478 0.00 0.00 0.00 3.27
4964 5265 6.866770 CGTACATACTCCTTCTGTCTGAAAAA 59.133 38.462 0.00 0.00 33.79 1.94
4982 5283 3.801114 AAAACTTGTCCCAAGCTTGTC 57.199 42.857 24.35 14.49 0.00 3.18
4984 5285 2.262423 ACTTGTCCCAAGCTTGTCTC 57.738 50.000 24.35 13.85 0.00 3.36
4985 5286 1.771255 ACTTGTCCCAAGCTTGTCTCT 59.229 47.619 24.35 0.00 0.00 3.10
4986 5287 2.173569 ACTTGTCCCAAGCTTGTCTCTT 59.826 45.455 24.35 0.43 0.00 2.85
4988 5289 4.141482 ACTTGTCCCAAGCTTGTCTCTTAA 60.141 41.667 24.35 10.79 0.00 1.85
4990 5291 4.985538 TGTCCCAAGCTTGTCTCTTAAAT 58.014 39.130 24.35 0.00 0.00 1.40
4991 5292 4.761739 TGTCCCAAGCTTGTCTCTTAAATG 59.238 41.667 24.35 5.47 0.00 2.32
4992 5293 4.156739 GTCCCAAGCTTGTCTCTTAAATGG 59.843 45.833 24.35 14.01 0.00 3.16
4993 5294 4.042809 TCCCAAGCTTGTCTCTTAAATGGA 59.957 41.667 24.35 15.96 0.00 3.41
4994 5295 4.952335 CCCAAGCTTGTCTCTTAAATGGAT 59.048 41.667 24.35 0.00 0.00 3.41
4995 5296 5.163581 CCCAAGCTTGTCTCTTAAATGGATG 60.164 44.000 24.35 3.72 0.00 3.51
4996 5297 5.649395 CCAAGCTTGTCTCTTAAATGGATGA 59.351 40.000 24.35 0.00 0.00 2.92
4998 5299 7.147949 CCAAGCTTGTCTCTTAAATGGATGAAT 60.148 37.037 24.35 0.00 0.00 2.57
4999 5300 7.565323 AGCTTGTCTCTTAAATGGATGAATC 57.435 36.000 0.00 0.00 0.00 2.52
5000 5301 7.344913 AGCTTGTCTCTTAAATGGATGAATCT 58.655 34.615 0.00 0.00 0.00 2.40
5003 5304 8.668510 TTGTCTCTTAAATGGATGAATCTAGC 57.331 34.615 0.00 0.00 0.00 3.42
5004 5305 7.795047 TGTCTCTTAAATGGATGAATCTAGCA 58.205 34.615 0.00 0.00 0.00 3.49
5005 5306 7.712639 TGTCTCTTAAATGGATGAATCTAGCAC 59.287 37.037 0.00 0.00 0.00 4.40
5006 5307 7.930865 GTCTCTTAAATGGATGAATCTAGCACT 59.069 37.037 0.00 0.00 0.00 4.40
5007 5308 9.147732 TCTCTTAAATGGATGAATCTAGCACTA 57.852 33.333 0.00 0.00 0.00 2.74
5008 5309 9.770097 CTCTTAAATGGATGAATCTAGCACTAA 57.230 33.333 0.00 0.00 0.00 2.24
5009 5310 9.547753 TCTTAAATGGATGAATCTAGCACTAAC 57.452 33.333 0.00 0.00 0.00 2.34
5012 5313 7.798596 AATGGATGAATCTAGCACTAACTTG 57.201 36.000 0.00 0.00 0.00 3.16
5013 5314 5.674525 TGGATGAATCTAGCACTAACTTGG 58.325 41.667 0.00 0.00 0.00 3.61
5014 5315 5.189736 TGGATGAATCTAGCACTAACTTGGT 59.810 40.000 0.00 0.00 0.00 3.67
5027 5328 7.470289 CACTAACTTGGTGCTAGATACATTC 57.530 40.000 0.00 0.00 0.00 2.67
5028 5329 7.041721 CACTAACTTGGTGCTAGATACATTCA 58.958 38.462 0.00 0.00 0.00 2.57
5029 5330 7.712639 CACTAACTTGGTGCTAGATACATTCAT 59.287 37.037 0.00 0.00 0.00 2.57
5030 5331 8.267894 ACTAACTTGGTGCTAGATACATTCATT 58.732 33.333 0.00 0.00 0.00 2.57
5031 5332 7.944729 AACTTGGTGCTAGATACATTCATTT 57.055 32.000 0.00 0.00 0.00 2.32
5032 5333 7.325660 ACTTGGTGCTAGATACATTCATTTG 57.674 36.000 0.00 0.00 0.00 2.32
5033 5334 7.112122 ACTTGGTGCTAGATACATTCATTTGA 58.888 34.615 0.00 0.00 0.00 2.69
5034 5335 7.281774 ACTTGGTGCTAGATACATTCATTTGAG 59.718 37.037 0.00 0.00 0.00 3.02
5035 5336 6.057533 TGGTGCTAGATACATTCATTTGAGG 58.942 40.000 0.00 0.00 0.00 3.86
5036 5337 5.471456 GGTGCTAGATACATTCATTTGAGGG 59.529 44.000 0.00 0.00 0.00 4.30
5037 5338 6.291377 GTGCTAGATACATTCATTTGAGGGA 58.709 40.000 0.00 0.00 0.00 4.20
5038 5339 6.203723 GTGCTAGATACATTCATTTGAGGGAC 59.796 42.308 0.00 0.00 0.00 4.46
5039 5340 6.126796 TGCTAGATACATTCATTTGAGGGACA 60.127 38.462 0.00 0.00 0.00 4.02
5040 5341 6.767902 GCTAGATACATTCATTTGAGGGACAA 59.232 38.462 0.00 0.00 36.65 3.18
5041 5342 7.041508 GCTAGATACATTCATTTGAGGGACAAG 60.042 40.741 0.00 0.00 39.77 3.16
5042 5343 6.725364 AGATACATTCATTTGAGGGACAAGT 58.275 36.000 0.00 0.00 39.77 3.16
5043 5344 7.177878 AGATACATTCATTTGAGGGACAAGTT 58.822 34.615 0.00 0.00 39.77 2.66
5044 5345 7.671398 AGATACATTCATTTGAGGGACAAGTTT 59.329 33.333 0.00 0.00 39.77 2.66
5045 5346 6.484364 ACATTCATTTGAGGGACAAGTTTT 57.516 33.333 0.00 0.00 39.77 2.43
5054 5355 1.202842 GGGACAAGTTTTCGGAGGGAA 60.203 52.381 0.00 0.00 0.00 3.97
5097 5398 7.535997 GGAAAAGAACTAAACACAAGTGAGTT 58.464 34.615 7.28 6.36 37.41 3.01
5105 5406 4.419522 AACACAAGTGAGTTGACAACAC 57.580 40.909 20.08 14.31 38.60 3.32
5160 5461 7.543756 AGTGCTAATCTTCACTAGAAAGAGAC 58.456 38.462 14.56 8.29 41.32 3.36
5162 5463 7.487829 GTGCTAATCTTCACTAGAAAGAGACAG 59.512 40.741 14.56 12.15 36.22 3.51
5294 5596 7.455058 TGTTGTTTAAGGAGTATTTGCTAGGA 58.545 34.615 0.00 0.00 0.00 2.94
5295 5597 8.107095 TGTTGTTTAAGGAGTATTTGCTAGGAT 58.893 33.333 0.00 0.00 0.00 3.24
5296 5598 8.957466 GTTGTTTAAGGAGTATTTGCTAGGATT 58.043 33.333 0.00 0.00 0.00 3.01
5310 5612 8.691661 TTTGCTAGGATTATGATTTTAGGTCC 57.308 34.615 0.00 0.00 0.00 4.46
5330 5632 0.036875 GCCACTGGCTAGAAAGGTGT 59.963 55.000 13.28 0.00 46.69 4.16
5381 5683 5.903923 AGTGGTTCATTTTATCCTCCCTTT 58.096 37.500 0.00 0.00 0.00 3.11
5416 5718 7.708752 CCTAACAGATGAGACTTAAATCACTCC 59.291 40.741 0.00 0.00 0.00 3.85
5417 5719 6.865834 ACAGATGAGACTTAAATCACTCCT 57.134 37.500 0.00 0.00 0.00 3.69
5430 5732 2.808919 TCACTCCTGGTTGGTCTAGAG 58.191 52.381 0.00 0.00 37.07 2.43
5431 5733 1.205893 CACTCCTGGTTGGTCTAGAGC 59.794 57.143 15.12 15.12 37.07 4.09
5432 5734 1.077993 ACTCCTGGTTGGTCTAGAGCT 59.922 52.381 21.80 0.00 37.07 4.09
5433 5735 2.183679 CTCCTGGTTGGTCTAGAGCTT 58.816 52.381 21.80 0.00 37.07 3.74
5434 5736 2.167487 CTCCTGGTTGGTCTAGAGCTTC 59.833 54.545 21.80 14.08 37.07 3.86
5435 5737 1.208293 CCTGGTTGGTCTAGAGCTTCC 59.792 57.143 21.80 21.18 0.00 3.46
5436 5738 0.895530 TGGTTGGTCTAGAGCTTCCG 59.104 55.000 21.80 0.00 0.00 4.30
5437 5739 0.175989 GGTTGGTCTAGAGCTTCCGG 59.824 60.000 21.80 0.00 0.00 5.14
5438 5740 1.183549 GTTGGTCTAGAGCTTCCGGA 58.816 55.000 21.80 0.00 0.00 5.14
5439 5741 1.757699 GTTGGTCTAGAGCTTCCGGAT 59.242 52.381 21.80 0.00 0.00 4.18
5440 5742 1.693627 TGGTCTAGAGCTTCCGGATC 58.306 55.000 21.80 0.00 0.00 3.36
5441 5743 1.215673 TGGTCTAGAGCTTCCGGATCT 59.784 52.381 21.80 8.32 43.67 2.75
5442 5744 2.312390 GGTCTAGAGCTTCCGGATCTT 58.688 52.381 14.73 0.00 41.35 2.40
5443 5745 2.035321 GGTCTAGAGCTTCCGGATCTTG 59.965 54.545 14.73 9.58 41.35 3.02
5444 5746 2.691011 GTCTAGAGCTTCCGGATCTTGT 59.309 50.000 11.21 3.95 41.35 3.16
5445 5747 2.952978 TCTAGAGCTTCCGGATCTTGTC 59.047 50.000 11.21 2.01 41.35 3.18
5446 5748 0.457851 AGAGCTTCCGGATCTTGTCG 59.542 55.000 4.15 0.00 37.40 4.35
5447 5749 1.148759 GAGCTTCCGGATCTTGTCGC 61.149 60.000 4.15 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 7.954788 AAGAAATAAACGATGAGGCTATCTC 57.045 36.000 0.00 0.00 42.74 2.75
14 15 8.738645 AAAAGAAATAAACGATGAGGCTATCT 57.261 30.769 0.00 0.00 0.00 1.98
42 43 8.199449 CCATCCAGCAAGAATACATGTTTAATT 58.801 33.333 2.30 0.00 0.00 1.40
43 44 7.560991 TCCATCCAGCAAGAATACATGTTTAAT 59.439 33.333 2.30 0.00 0.00 1.40
44 45 6.889177 TCCATCCAGCAAGAATACATGTTTAA 59.111 34.615 2.30 0.00 0.00 1.52
45 46 6.318648 GTCCATCCAGCAAGAATACATGTTTA 59.681 38.462 2.30 0.00 0.00 2.01
46 47 5.126061 GTCCATCCAGCAAGAATACATGTTT 59.874 40.000 2.30 0.00 0.00 2.83
47 48 4.641989 GTCCATCCAGCAAGAATACATGTT 59.358 41.667 2.30 0.00 0.00 2.71
48 49 4.080129 AGTCCATCCAGCAAGAATACATGT 60.080 41.667 2.69 2.69 0.00 3.21
49 50 4.458397 AGTCCATCCAGCAAGAATACATG 58.542 43.478 0.00 0.00 0.00 3.21
50 51 4.712476 GAGTCCATCCAGCAAGAATACAT 58.288 43.478 0.00 0.00 0.00 2.29
51 52 4.142609 GAGTCCATCCAGCAAGAATACA 57.857 45.455 0.00 0.00 0.00 2.29
66 67 4.995058 GGTGGGGTGGGGAGTCCA 62.995 72.222 12.30 0.00 44.79 4.02
92 93 1.342174 CAACTATCATGGGCAATGGGC 59.658 52.381 1.15 0.00 43.74 5.36
93 94 2.948115 TCAACTATCATGGGCAATGGG 58.052 47.619 1.15 0.00 36.86 4.00
94 95 6.653526 TTATTCAACTATCATGGGCAATGG 57.346 37.500 1.15 0.00 36.86 3.16
95 96 7.170320 GCTTTTATTCAACTATCATGGGCAATG 59.830 37.037 0.00 0.00 37.66 2.82
96 97 7.070322 AGCTTTTATTCAACTATCATGGGCAAT 59.930 33.333 0.00 0.00 0.00 3.56
97 98 6.380846 AGCTTTTATTCAACTATCATGGGCAA 59.619 34.615 0.00 0.00 0.00 4.52
98 99 5.893255 AGCTTTTATTCAACTATCATGGGCA 59.107 36.000 0.00 0.00 0.00 5.36
99 100 6.264067 AGAGCTTTTATTCAACTATCATGGGC 59.736 38.462 0.00 0.00 0.00 5.36
100 101 7.814264 AGAGCTTTTATTCAACTATCATGGG 57.186 36.000 0.00 0.00 0.00 4.00
107 108 9.975218 AGGGAAATTAGAGCTTTTATTCAACTA 57.025 29.630 0.00 0.00 0.00 2.24
108 109 8.743714 CAGGGAAATTAGAGCTTTTATTCAACT 58.256 33.333 0.00 0.00 0.00 3.16
109 110 7.489435 GCAGGGAAATTAGAGCTTTTATTCAAC 59.511 37.037 0.00 0.00 0.00 3.18
110 111 7.178274 TGCAGGGAAATTAGAGCTTTTATTCAA 59.822 33.333 0.00 0.00 0.00 2.69
111 112 6.663093 TGCAGGGAAATTAGAGCTTTTATTCA 59.337 34.615 0.00 0.00 0.00 2.57
112 113 7.100458 TGCAGGGAAATTAGAGCTTTTATTC 57.900 36.000 0.00 0.00 0.00 1.75
113 114 7.480760 TTGCAGGGAAATTAGAGCTTTTATT 57.519 32.000 0.00 0.00 0.00 1.40
114 115 7.480760 TTTGCAGGGAAATTAGAGCTTTTAT 57.519 32.000 0.00 0.00 0.00 1.40
115 116 6.909550 TTTGCAGGGAAATTAGAGCTTTTA 57.090 33.333 0.00 0.00 0.00 1.52
116 117 5.806654 TTTGCAGGGAAATTAGAGCTTTT 57.193 34.783 0.00 0.00 0.00 2.27
117 118 5.806654 TTTTGCAGGGAAATTAGAGCTTT 57.193 34.783 0.00 0.00 0.00 3.51
118 119 5.806654 TTTTTGCAGGGAAATTAGAGCTT 57.193 34.783 0.00 0.00 0.00 3.74
171 172 7.778083 ACTAATGTGTTGTGAGAATATACCGA 58.222 34.615 0.00 0.00 0.00 4.69
276 281 6.566564 AACACAAAGTTGCAGATATTCTGACG 60.567 38.462 8.65 0.00 42.16 4.35
312 317 9.981114 AACAAGTTTTCCTCTAATTTTGGTATG 57.019 29.630 0.00 0.00 0.00 2.39
334 339 9.677567 GATCTTCTGCAATACTAAAACAAACAA 57.322 29.630 0.00 0.00 0.00 2.83
343 348 8.043113 AGAACATGTGATCTTCTGCAATACTAA 58.957 33.333 0.00 0.00 0.00 2.24
384 389 5.049167 TGATTCGGATTAATTGCAAATGCC 58.951 37.500 1.71 0.02 41.18 4.40
518 565 6.091713 ACACGGAGTCGGAGTAAATAAAATTG 59.908 38.462 4.48 0.00 41.61 2.32
533 580 1.636988 GGGAACATAACACGGAGTCG 58.363 55.000 0.00 0.00 41.61 4.18
539 586 4.196626 TCACTAAGGGGAACATAACACG 57.803 45.455 0.00 0.00 0.00 4.49
540 587 8.747538 ATATTTCACTAAGGGGAACATAACAC 57.252 34.615 0.00 0.00 0.00 3.32
685 732 8.434661 GCACATGAATGTTGGTTTTAAGTTATG 58.565 33.333 0.00 0.00 39.39 1.90
687 734 7.492524 TGCACATGAATGTTGGTTTTAAGTTA 58.507 30.769 0.00 0.00 39.39 2.24
697 744 2.990514 CACACATGCACATGAATGTTGG 59.009 45.455 17.19 0.00 41.43 3.77
752 799 7.778083 TCTGCTCGGTCAAAATATTACTCTAA 58.222 34.615 0.00 0.00 0.00 2.10
754 801 6.222038 TCTGCTCGGTCAAAATATTACTCT 57.778 37.500 0.00 0.00 0.00 3.24
755 802 6.564873 GCATCTGCTCGGTCAAAATATTACTC 60.565 42.308 0.00 0.00 38.21 2.59
756 803 5.237344 GCATCTGCTCGGTCAAAATATTACT 59.763 40.000 0.00 0.00 38.21 2.24
757 804 5.444122 GCATCTGCTCGGTCAAAATATTAC 58.556 41.667 0.00 0.00 38.21 1.89
758 805 4.515191 GGCATCTGCTCGGTCAAAATATTA 59.485 41.667 1.70 0.00 41.70 0.98
759 806 3.316308 GGCATCTGCTCGGTCAAAATATT 59.684 43.478 1.70 0.00 41.70 1.28
760 807 2.880890 GGCATCTGCTCGGTCAAAATAT 59.119 45.455 1.70 0.00 41.70 1.28
762 809 1.098050 GGCATCTGCTCGGTCAAAAT 58.902 50.000 1.70 0.00 41.70 1.82
764 811 0.674581 CTGGCATCTGCTCGGTCAAA 60.675 55.000 1.70 0.00 41.70 2.69
765 812 1.078918 CTGGCATCTGCTCGGTCAA 60.079 57.895 1.70 0.00 41.70 3.18
766 813 2.580815 CTGGCATCTGCTCGGTCA 59.419 61.111 1.70 0.00 41.70 4.02
767 814 2.202987 CCTGGCATCTGCTCGGTC 60.203 66.667 1.70 0.00 41.70 4.79
769 816 4.478371 TGCCTGGCATCTGCTCGG 62.478 66.667 19.30 4.31 41.70 4.63
770 817 2.302199 TACTGCCTGGCATCTGCTCG 62.302 60.000 23.64 11.09 38.13 5.03
773 820 1.821332 GGTACTGCCTGGCATCTGC 60.821 63.158 23.64 13.37 38.13 4.26
774 821 4.547859 GGTACTGCCTGGCATCTG 57.452 61.111 23.64 13.45 38.13 2.90
798 924 3.408634 AGAACATAAAAGTGGGGTGACG 58.591 45.455 0.00 0.00 0.00 4.35
819 945 9.460413 TTCCTTATTTTGAGGAAGAGGGATATA 57.540 33.333 1.61 0.00 45.81 0.86
820 946 7.954539 TCCTTATTTTGAGGAAGAGGGATAT 57.045 36.000 0.00 0.00 40.27 1.63
850 976 4.436998 GCGTCGGTGTGGGAGAGG 62.437 72.222 0.00 0.00 0.00 3.69
1055 1192 4.162690 CTTCTTCCCCGGGCGGAG 62.163 72.222 17.73 13.22 37.50 4.63
1059 1196 4.491409 GAGGCTTCTTCCCCGGGC 62.491 72.222 17.73 0.37 0.00 6.13
1060 1197 2.689034 AGAGGCTTCTTCCCCGGG 60.689 66.667 15.80 15.80 0.00 5.73
1122 1283 1.284408 GCTGTAGATCTCTCGGCGG 59.716 63.158 7.21 0.00 0.00 6.13
1151 1312 3.466791 ATCGGCGGATTGAGCTGGG 62.467 63.158 7.21 0.00 41.11 4.45
1153 1314 2.249535 CCATCGGCGGATTGAGCTG 61.250 63.158 7.21 0.00 42.06 4.24
1302 1463 4.516195 GCGGAGGGGTCGAGCTTC 62.516 72.222 15.18 12.14 0.00 3.86
1398 1559 0.936764 CTATCTAGTGGCAGCGCACG 60.937 60.000 11.47 0.01 0.00 5.34
1409 1570 1.693627 CCGCCAGTCACCTATCTAGT 58.306 55.000 0.00 0.00 0.00 2.57
1411 1572 0.106167 AGCCGCCAGTCACCTATCTA 60.106 55.000 0.00 0.00 0.00 1.98
1412 1573 1.381872 AGCCGCCAGTCACCTATCT 60.382 57.895 0.00 0.00 0.00 1.98
1413 1574 1.227380 CAGCCGCCAGTCACCTATC 60.227 63.158 0.00 0.00 0.00 2.08
1415 1576 4.082523 GCAGCCGCCAGTCACCTA 62.083 66.667 0.00 0.00 0.00 3.08
1463 1629 7.020010 CAGAACAAGACATTAATCACAAGAGC 58.980 38.462 0.00 0.00 0.00 4.09
1464 1630 8.315391 TCAGAACAAGACATTAATCACAAGAG 57.685 34.615 0.00 0.00 0.00 2.85
1465 1631 7.095060 GCTCAGAACAAGACATTAATCACAAGA 60.095 37.037 0.00 0.00 0.00 3.02
1466 1632 7.020010 GCTCAGAACAAGACATTAATCACAAG 58.980 38.462 0.00 0.00 0.00 3.16
1467 1633 6.072508 GGCTCAGAACAAGACATTAATCACAA 60.073 38.462 0.00 0.00 0.00 3.33
1468 1634 5.412594 GGCTCAGAACAAGACATTAATCACA 59.587 40.000 0.00 0.00 0.00 3.58
1469 1635 5.645497 AGGCTCAGAACAAGACATTAATCAC 59.355 40.000 0.00 0.00 0.00 3.06
1471 1637 7.712639 TCATAGGCTCAGAACAAGACATTAATC 59.287 37.037 0.00 0.00 0.00 1.75
1472 1638 7.568349 TCATAGGCTCAGAACAAGACATTAAT 58.432 34.615 0.00 0.00 0.00 1.40
1473 1639 6.946340 TCATAGGCTCAGAACAAGACATTAA 58.054 36.000 0.00 0.00 0.00 1.40
1519 1701 4.870426 GCGAATCGACATATCCCAATGTAT 59.130 41.667 6.91 0.00 40.17 2.29
1530 1712 3.378911 TTATGGCTGCGAATCGACATA 57.621 42.857 6.91 6.29 0.00 2.29
1545 1727 2.470821 GTGATCGACGGAGGTTTATGG 58.529 52.381 0.00 0.00 0.00 2.74
1557 1739 1.429148 GCGGGTTCATGGTGATCGAC 61.429 60.000 0.00 0.00 0.00 4.20
1575 1757 2.032178 GCCAATACCAAATCGACTGAGC 59.968 50.000 0.00 0.00 0.00 4.26
1612 1797 1.228552 AATCCACTGGCGGCAAACT 60.229 52.632 14.48 0.00 0.00 2.66
1711 1896 7.416890 GGCAGTTATCAGCGTCCTAGAATATAT 60.417 40.741 0.00 0.00 0.00 0.86
1712 1897 6.127703 GGCAGTTATCAGCGTCCTAGAATATA 60.128 42.308 0.00 0.00 0.00 0.86
1713 1898 5.336849 GGCAGTTATCAGCGTCCTAGAATAT 60.337 44.000 0.00 0.00 0.00 1.28
1714 1899 4.022242 GGCAGTTATCAGCGTCCTAGAATA 60.022 45.833 0.00 0.00 0.00 1.75
1715 1900 3.243907 GGCAGTTATCAGCGTCCTAGAAT 60.244 47.826 0.00 0.00 0.00 2.40
1727 1912 1.507562 CACACGTGTGGCAGTTATCA 58.492 50.000 35.65 0.00 42.10 2.15
1867 2054 6.328934 TGGAGATGAGTAGTATTTATTGGGCA 59.671 38.462 0.00 0.00 0.00 5.36
1874 2061 6.208797 CACGGGATGGAGATGAGTAGTATTTA 59.791 42.308 0.00 0.00 0.00 1.40
2044 2234 7.584122 TGGCAACTATAGTTAACCAAAACAA 57.416 32.000 26.14 10.70 39.20 2.83
2826 3019 3.801114 AGTCTTTGTTGCCAAACTTCC 57.199 42.857 0.00 0.00 35.67 3.46
2864 3057 1.417890 AGCTGTAGAGTGCACCAAAGT 59.582 47.619 14.63 0.00 0.00 2.66
3104 3348 3.871594 CGGAAGTTATAAGGCTGTTCCTG 59.128 47.826 0.00 0.00 46.94 3.86
3247 3492 4.283467 CCATCCCAGAAGATAACGGTATCA 59.717 45.833 22.06 0.00 38.95 2.15
3509 3758 2.437413 GTGGAGAAATCCAGTGAACCC 58.563 52.381 0.00 0.00 41.00 4.11
3633 3882 5.108385 ACTTCGTGCAAAAAGGTTATCAG 57.892 39.130 12.51 0.00 0.00 2.90
3831 4086 3.508762 AGTTAGCGACAACGGAGTAATG 58.491 45.455 0.00 0.00 45.00 1.90
3840 4095 1.398071 GGCAAACGAGTTAGCGACAAC 60.398 52.381 0.00 0.00 34.83 3.32
3859 4114 4.154195 GCCATTCACCTATTAGCATTACGG 59.846 45.833 0.00 0.00 0.00 4.02
3860 4115 4.997395 AGCCATTCACCTATTAGCATTACG 59.003 41.667 0.00 0.00 0.00 3.18
3882 4138 6.210584 ACCTTCTTCTTCTCTTCCTTGACTAG 59.789 42.308 0.00 0.00 0.00 2.57
4134 4390 2.103263 CCGCAGCTTCTCCTTTATAGGT 59.897 50.000 0.00 0.00 42.60 3.08
4190 4446 2.986979 TGCCGGCACTCGTAGACA 60.987 61.111 29.03 0.00 37.11 3.41
4252 4509 0.673985 CCGACACAACAGAGAGTCCA 59.326 55.000 0.00 0.00 0.00 4.02
4279 4539 3.562567 ACGAGAGTCTTAGACAGCAAC 57.437 47.619 15.23 4.36 44.19 4.17
4299 4559 5.411361 CGGAGAAACAAGAATAACATGACCA 59.589 40.000 0.00 0.00 0.00 4.02
4339 4599 1.374885 CGGACATGTGGCAACCGTA 60.375 57.895 1.15 0.00 38.97 4.02
4419 4679 7.758528 TGAGACATCGTAATCATCATCATCATC 59.241 37.037 0.00 0.00 0.00 2.92
4420 4680 7.544915 GTGAGACATCGTAATCATCATCATCAT 59.455 37.037 0.00 0.00 0.00 2.45
4421 4681 6.865205 GTGAGACATCGTAATCATCATCATCA 59.135 38.462 0.00 0.00 0.00 3.07
4498 4771 5.308759 AGTTAAGCCTAACTAAACACCTCCA 59.691 40.000 5.92 0.00 44.85 3.86
4589 4879 3.901844 GGTCCTACAGCAATGGTATAGGA 59.098 47.826 14.76 14.76 39.26 2.94
4655 4955 6.665248 AGGGAGAAGTTGATTTTTAAGATGGG 59.335 38.462 0.00 0.00 0.00 4.00
4677 4978 6.824553 TGAATCATTGAGATCTGAAGTAGGG 58.175 40.000 0.00 0.00 35.39 3.53
4700 5001 9.695526 TTCTTTTCACATTTATGGACTCAATTG 57.304 29.630 0.00 0.00 0.00 2.32
4720 5021 9.755804 GAAGGATCATTTTCTCTGTTTTCTTTT 57.244 29.630 0.00 0.00 0.00 2.27
4757 5058 8.253810 CCAAGTCAGAGAGTATTCATCAAACTA 58.746 37.037 0.00 0.00 0.00 2.24
4758 5059 7.102346 CCAAGTCAGAGAGTATTCATCAAACT 58.898 38.462 0.00 0.00 0.00 2.66
4759 5060 6.876257 ACCAAGTCAGAGAGTATTCATCAAAC 59.124 38.462 0.00 0.00 0.00 2.93
4760 5061 7.009179 ACCAAGTCAGAGAGTATTCATCAAA 57.991 36.000 0.00 0.00 0.00 2.69
4761 5062 6.611613 ACCAAGTCAGAGAGTATTCATCAA 57.388 37.500 0.00 0.00 0.00 2.57
4762 5063 6.211384 TCAACCAAGTCAGAGAGTATTCATCA 59.789 38.462 0.00 0.00 0.00 3.07
4763 5064 6.634805 TCAACCAAGTCAGAGAGTATTCATC 58.365 40.000 0.00 0.00 0.00 2.92
4764 5065 6.611613 TCAACCAAGTCAGAGAGTATTCAT 57.388 37.500 0.00 0.00 0.00 2.57
4765 5066 6.611613 ATCAACCAAGTCAGAGAGTATTCA 57.388 37.500 0.00 0.00 0.00 2.57
4766 5067 7.206687 CCTATCAACCAAGTCAGAGAGTATTC 58.793 42.308 0.00 0.00 0.00 1.75
4767 5068 6.098982 CCCTATCAACCAAGTCAGAGAGTATT 59.901 42.308 0.00 0.00 0.00 1.89
4768 5069 5.600484 CCCTATCAACCAAGTCAGAGAGTAT 59.400 44.000 0.00 0.00 0.00 2.12
4769 5070 4.956700 CCCTATCAACCAAGTCAGAGAGTA 59.043 45.833 0.00 0.00 0.00 2.59
4770 5071 3.772025 CCCTATCAACCAAGTCAGAGAGT 59.228 47.826 0.00 0.00 0.00 3.24
4771 5072 4.026744 TCCCTATCAACCAAGTCAGAGAG 58.973 47.826 0.00 0.00 0.00 3.20
4772 5073 4.061131 TCCCTATCAACCAAGTCAGAGA 57.939 45.455 0.00 0.00 0.00 3.10
4773 5074 4.406972 TCATCCCTATCAACCAAGTCAGAG 59.593 45.833 0.00 0.00 0.00 3.35
4774 5075 4.361783 TCATCCCTATCAACCAAGTCAGA 58.638 43.478 0.00 0.00 0.00 3.27
4775 5076 4.760530 TCATCCCTATCAACCAAGTCAG 57.239 45.455 0.00 0.00 0.00 3.51
4776 5077 4.288366 TGTTCATCCCTATCAACCAAGTCA 59.712 41.667 0.00 0.00 0.00 3.41
4777 5078 4.843728 TGTTCATCCCTATCAACCAAGTC 58.156 43.478 0.00 0.00 0.00 3.01
4778 5079 4.324563 CCTGTTCATCCCTATCAACCAAGT 60.325 45.833 0.00 0.00 0.00 3.16
4779 5080 4.202441 CCTGTTCATCCCTATCAACCAAG 58.798 47.826 0.00 0.00 0.00 3.61
4780 5081 3.053693 CCCTGTTCATCCCTATCAACCAA 60.054 47.826 0.00 0.00 0.00 3.67
4781 5082 2.509548 CCCTGTTCATCCCTATCAACCA 59.490 50.000 0.00 0.00 0.00 3.67
4782 5083 2.158608 CCCCTGTTCATCCCTATCAACC 60.159 54.545 0.00 0.00 0.00 3.77
4783 5084 2.777692 TCCCCTGTTCATCCCTATCAAC 59.222 50.000 0.00 0.00 0.00 3.18
4784 5085 2.777692 GTCCCCTGTTCATCCCTATCAA 59.222 50.000 0.00 0.00 0.00 2.57
4785 5086 2.022035 AGTCCCCTGTTCATCCCTATCA 60.022 50.000 0.00 0.00 0.00 2.15
4786 5087 2.695585 AGTCCCCTGTTCATCCCTATC 58.304 52.381 0.00 0.00 0.00 2.08
4787 5088 2.897823 AGTCCCCTGTTCATCCCTAT 57.102 50.000 0.00 0.00 0.00 2.57
4788 5089 2.316677 TGTAGTCCCCTGTTCATCCCTA 59.683 50.000 0.00 0.00 0.00 3.53
4798 5099 5.952526 ACGTTAAAATTTGTAGTCCCCTG 57.047 39.130 0.00 0.00 0.00 4.45
4816 5117 7.875327 ATATCCTAAAATTGCCAACTACGTT 57.125 32.000 0.00 0.00 0.00 3.99
4817 5118 7.554835 TCAATATCCTAAAATTGCCAACTACGT 59.445 33.333 0.00 0.00 33.91 3.57
4818 5119 7.925993 TCAATATCCTAAAATTGCCAACTACG 58.074 34.615 0.00 0.00 33.91 3.51
4841 5142 9.679661 TGCATATCTAAAGAACCAACTTTATCA 57.320 29.630 0.00 0.00 40.17 2.15
4847 5148 9.125026 CCTAATTGCATATCTAAAGAACCAACT 57.875 33.333 0.00 0.00 0.00 3.16
4848 5149 9.120538 TCCTAATTGCATATCTAAAGAACCAAC 57.879 33.333 0.00 0.00 0.00 3.77
4849 5150 9.342308 CTCCTAATTGCATATCTAAAGAACCAA 57.658 33.333 0.00 0.00 0.00 3.67
4850 5151 8.494433 ACTCCTAATTGCATATCTAAAGAACCA 58.506 33.333 0.00 0.00 0.00 3.67
4879 5180 6.758254 ACCTTATTGCTTGTTTGCTTAACAT 58.242 32.000 5.93 0.00 45.72 2.71
4898 5199 4.611367 AGCTAGTTCCTCTGCTTACCTTA 58.389 43.478 0.00 0.00 30.56 2.69
4899 5200 3.445987 AGCTAGTTCCTCTGCTTACCTT 58.554 45.455 0.00 0.00 30.56 3.50
4900 5201 3.108847 AGCTAGTTCCTCTGCTTACCT 57.891 47.619 0.00 0.00 30.56 3.08
4901 5202 3.243602 GCTAGCTAGTTCCTCTGCTTACC 60.244 52.174 21.62 0.00 34.35 2.85
4902 5203 3.634910 AGCTAGCTAGTTCCTCTGCTTAC 59.365 47.826 17.69 0.68 34.35 2.34
4903 5204 3.904717 AGCTAGCTAGTTCCTCTGCTTA 58.095 45.455 17.69 0.00 34.35 3.09
4904 5205 2.745968 AGCTAGCTAGTTCCTCTGCTT 58.254 47.619 17.69 0.00 34.35 3.91
4905 5206 2.452600 AGCTAGCTAGTTCCTCTGCT 57.547 50.000 17.69 8.24 35.73 4.24
4906 5207 2.030274 GCTAGCTAGCTAGTTCCTCTGC 60.030 54.545 39.05 25.88 45.67 4.26
4907 5208 3.915437 GCTAGCTAGCTAGTTCCTCTG 57.085 52.381 39.05 21.44 45.67 3.35
4934 5235 5.475909 AGACAGAAGGAGTATGTACGTTTGA 59.524 40.000 0.00 0.00 0.00 2.69
4972 5273 5.649395 TCATCCATTTAAGAGACAAGCTTGG 59.351 40.000 29.18 12.28 0.00 3.61
4973 5274 6.748333 TCATCCATTTAAGAGACAAGCTTG 57.252 37.500 24.84 24.84 0.00 4.01
4974 5275 7.833183 AGATTCATCCATTTAAGAGACAAGCTT 59.167 33.333 0.00 0.00 0.00 3.74
4975 5276 7.344913 AGATTCATCCATTTAAGAGACAAGCT 58.655 34.615 0.00 0.00 0.00 3.74
4976 5277 7.565323 AGATTCATCCATTTAAGAGACAAGC 57.435 36.000 0.00 0.00 0.00 4.01
4977 5278 8.772705 GCTAGATTCATCCATTTAAGAGACAAG 58.227 37.037 0.00 0.00 0.00 3.16
4978 5279 8.267183 TGCTAGATTCATCCATTTAAGAGACAA 58.733 33.333 0.00 0.00 0.00 3.18
4979 5280 7.712639 GTGCTAGATTCATCCATTTAAGAGACA 59.287 37.037 0.00 0.00 0.00 3.41
4980 5281 7.930865 AGTGCTAGATTCATCCATTTAAGAGAC 59.069 37.037 0.00 0.00 0.00 3.36
4981 5282 8.027524 AGTGCTAGATTCATCCATTTAAGAGA 57.972 34.615 0.00 0.00 0.00 3.10
4982 5283 9.770097 TTAGTGCTAGATTCATCCATTTAAGAG 57.230 33.333 0.00 0.00 0.00 2.85
4984 5285 9.553064 AGTTAGTGCTAGATTCATCCATTTAAG 57.447 33.333 0.00 0.00 0.00 1.85
4985 5286 9.905713 AAGTTAGTGCTAGATTCATCCATTTAA 57.094 29.630 0.00 0.00 0.00 1.52
4986 5287 9.330063 CAAGTTAGTGCTAGATTCATCCATTTA 57.670 33.333 0.00 0.00 0.00 1.40
4988 5289 6.769822 CCAAGTTAGTGCTAGATTCATCCATT 59.230 38.462 0.00 0.00 0.00 3.16
4990 5291 5.189736 ACCAAGTTAGTGCTAGATTCATCCA 59.810 40.000 0.00 0.00 0.00 3.41
4991 5292 5.525378 CACCAAGTTAGTGCTAGATTCATCC 59.475 44.000 0.00 0.00 0.00 3.51
4992 5293 6.595772 CACCAAGTTAGTGCTAGATTCATC 57.404 41.667 0.00 0.00 0.00 2.92
5003 5304 7.041721 TGAATGTATCTAGCACCAAGTTAGTG 58.958 38.462 0.00 0.00 38.30 2.74
5004 5305 7.182817 TGAATGTATCTAGCACCAAGTTAGT 57.817 36.000 0.00 0.00 33.25 2.24
5005 5306 8.668510 AATGAATGTATCTAGCACCAAGTTAG 57.331 34.615 0.00 0.00 32.79 2.34
5006 5307 8.892723 CAAATGAATGTATCTAGCACCAAGTTA 58.107 33.333 0.00 0.00 0.00 2.24
5007 5308 7.611467 TCAAATGAATGTATCTAGCACCAAGTT 59.389 33.333 0.00 0.00 0.00 2.66
5008 5309 7.112122 TCAAATGAATGTATCTAGCACCAAGT 58.888 34.615 0.00 0.00 0.00 3.16
5009 5310 7.255035 CCTCAAATGAATGTATCTAGCACCAAG 60.255 40.741 0.00 0.00 0.00 3.61
5012 5313 5.471456 CCCTCAAATGAATGTATCTAGCACC 59.529 44.000 0.00 0.00 0.00 5.01
5013 5314 6.203723 GTCCCTCAAATGAATGTATCTAGCAC 59.796 42.308 0.00 0.00 0.00 4.40
5014 5315 6.126796 TGTCCCTCAAATGAATGTATCTAGCA 60.127 38.462 0.00 0.00 0.00 3.49
5016 5317 7.989741 ACTTGTCCCTCAAATGAATGTATCTAG 59.010 37.037 0.00 0.00 35.48 2.43
5017 5318 7.861629 ACTTGTCCCTCAAATGAATGTATCTA 58.138 34.615 0.00 0.00 35.48 1.98
5018 5319 6.725364 ACTTGTCCCTCAAATGAATGTATCT 58.275 36.000 0.00 0.00 35.48 1.98
5019 5320 7.396540 AACTTGTCCCTCAAATGAATGTATC 57.603 36.000 0.00 0.00 35.48 2.24
5020 5321 7.781324 AAACTTGTCCCTCAAATGAATGTAT 57.219 32.000 0.00 0.00 35.48 2.29
5021 5322 7.521423 CGAAAACTTGTCCCTCAAATGAATGTA 60.521 37.037 0.00 0.00 35.48 2.29
5022 5323 6.484364 AAAACTTGTCCCTCAAATGAATGT 57.516 33.333 0.00 0.00 35.48 2.71
5023 5324 5.630680 CGAAAACTTGTCCCTCAAATGAATG 59.369 40.000 0.00 0.00 35.48 2.67
5024 5325 5.278957 CCGAAAACTTGTCCCTCAAATGAAT 60.279 40.000 0.00 0.00 35.48 2.57
5025 5326 4.037446 CCGAAAACTTGTCCCTCAAATGAA 59.963 41.667 0.00 0.00 35.48 2.57
5026 5327 3.568007 CCGAAAACTTGTCCCTCAAATGA 59.432 43.478 0.00 0.00 35.48 2.57
5027 5328 3.568007 TCCGAAAACTTGTCCCTCAAATG 59.432 43.478 0.00 0.00 35.48 2.32
5028 5329 3.821033 CTCCGAAAACTTGTCCCTCAAAT 59.179 43.478 0.00 0.00 35.48 2.32
5029 5330 3.211045 CTCCGAAAACTTGTCCCTCAAA 58.789 45.455 0.00 0.00 35.48 2.69
5030 5331 2.486548 CCTCCGAAAACTTGTCCCTCAA 60.487 50.000 0.00 0.00 34.61 3.02
5031 5332 1.071699 CCTCCGAAAACTTGTCCCTCA 59.928 52.381 0.00 0.00 0.00 3.86
5032 5333 1.610886 CCCTCCGAAAACTTGTCCCTC 60.611 57.143 0.00 0.00 0.00 4.30
5033 5334 0.400594 CCCTCCGAAAACTTGTCCCT 59.599 55.000 0.00 0.00 0.00 4.20
5034 5335 0.399075 TCCCTCCGAAAACTTGTCCC 59.601 55.000 0.00 0.00 0.00 4.46
5035 5336 2.265589 TTCCCTCCGAAAACTTGTCC 57.734 50.000 0.00 0.00 0.00 4.02
5036 5337 4.576879 ACTATTCCCTCCGAAAACTTGTC 58.423 43.478 0.00 0.00 33.08 3.18
5037 5338 4.635699 ACTATTCCCTCCGAAAACTTGT 57.364 40.909 0.00 0.00 33.08 3.16
5038 5339 5.116882 CCTACTATTCCCTCCGAAAACTTG 58.883 45.833 0.00 0.00 33.08 3.16
5039 5340 4.781621 ACCTACTATTCCCTCCGAAAACTT 59.218 41.667 0.00 0.00 33.08 2.66
5040 5341 4.359996 ACCTACTATTCCCTCCGAAAACT 58.640 43.478 0.00 0.00 33.08 2.66
5041 5342 4.750021 ACCTACTATTCCCTCCGAAAAC 57.250 45.455 0.00 0.00 33.08 2.43
5042 5343 6.872585 TTTACCTACTATTCCCTCCGAAAA 57.127 37.500 0.00 0.00 33.08 2.29
5043 5344 6.669154 TCTTTTACCTACTATTCCCTCCGAAA 59.331 38.462 0.00 0.00 33.08 3.46
5044 5345 6.197168 TCTTTTACCTACTATTCCCTCCGAA 58.803 40.000 0.00 0.00 34.14 4.30
5045 5346 5.769835 TCTTTTACCTACTATTCCCTCCGA 58.230 41.667 0.00 0.00 0.00 4.55
5054 5355 7.562135 TCTTTTCCGCATCTTTTACCTACTAT 58.438 34.615 0.00 0.00 0.00 2.12
5197 5499 9.950680 CATTAAGTTGTCAAACAATTAGTGTCT 57.049 29.630 0.00 0.00 40.59 3.41
5269 5571 7.455058 TCCTAGCAAATACTCCTTAAACAACA 58.545 34.615 0.00 0.00 0.00 3.33
5270 5572 7.916914 TCCTAGCAAATACTCCTTAAACAAC 57.083 36.000 0.00 0.00 0.00 3.32
5285 5587 7.444183 CGGACCTAAAATCATAATCCTAGCAAA 59.556 37.037 0.00 0.00 0.00 3.68
5286 5588 6.934645 CGGACCTAAAATCATAATCCTAGCAA 59.065 38.462 0.00 0.00 0.00 3.91
5288 5590 5.351740 GCGGACCTAAAATCATAATCCTAGC 59.648 44.000 0.00 0.00 0.00 3.42
5290 5592 5.308497 TGGCGGACCTAAAATCATAATCCTA 59.692 40.000 0.00 0.00 36.63 2.94
5292 5594 4.215613 GTGGCGGACCTAAAATCATAATCC 59.784 45.833 0.00 0.00 36.63 3.01
5294 5596 4.821805 CAGTGGCGGACCTAAAATCATAAT 59.178 41.667 0.00 0.00 36.63 1.28
5295 5597 4.196193 CAGTGGCGGACCTAAAATCATAA 58.804 43.478 0.00 0.00 36.63 1.90
5296 5598 3.433031 CCAGTGGCGGACCTAAAATCATA 60.433 47.826 0.00 0.00 36.63 2.15
5357 5659 6.652205 AAGGGAGGATAAAATGAACCACTA 57.348 37.500 0.00 0.00 0.00 2.74
5381 5683 2.702478 CTCATCTGTTAGGGATGGCTCA 59.298 50.000 0.00 0.00 40.44 4.26
5416 5718 1.134965 CGGAAGCTCTAGACCAACCAG 60.135 57.143 0.00 0.00 0.00 4.00
5417 5719 0.895530 CGGAAGCTCTAGACCAACCA 59.104 55.000 0.00 0.00 0.00 3.67
5430 5732 3.400007 GCGACAAGATCCGGAAGC 58.600 61.111 9.01 3.41 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.