Multiple sequence alignment - TraesCS6A01G108700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G108700 chr6A 100.000 4791 0 0 1 4791 77532075 77536865 0.000000e+00 8848.0
1 TraesCS6A01G108700 chr6D 93.177 3503 186 33 1311 4786 60542768 60546244 0.000000e+00 5096.0
2 TraesCS6A01G108700 chr6D 88.451 736 29 17 515 1227 60542059 60542761 0.000000e+00 837.0
3 TraesCS6A01G108700 chr6D 85.167 418 49 11 2 409 58106920 58107334 2.670000e-112 416.0
4 TraesCS6A01G108700 chr6B 91.687 1648 96 17 1307 2920 134821198 134822838 0.000000e+00 2246.0
5 TraesCS6A01G108700 chr6B 90.107 748 55 14 2991 3732 134822841 134823575 0.000000e+00 953.0
6 TraesCS6A01G108700 chr6B 88.721 727 32 17 517 1227 134820503 134821195 0.000000e+00 843.0
7 TraesCS6A01G108700 chr6B 86.265 648 58 19 3794 4416 134823581 134824222 0.000000e+00 675.0
8 TraesCS6A01G108700 chr6B 85.577 208 22 2 4580 4786 134824306 134824506 1.350000e-50 211.0
9 TraesCS6A01G108700 chr6B 90.588 85 3 2 1226 1305 650598700 650598616 1.820000e-19 108.0
10 TraesCS6A01G108700 chr6B 92.308 39 3 0 477 515 60123912 60123874 6.700000e-04 56.5
11 TraesCS6A01G108700 chr7D 89.209 417 35 6 1 412 186322022 186321611 3.310000e-141 512.0
12 TraesCS6A01G108700 chr4D 86.651 427 44 9 1 421 477919605 477919186 1.210000e-125 460.0
13 TraesCS6A01G108700 chr4D 85.012 427 55 7 1 421 70671972 70671549 4.430000e-115 425.0
14 TraesCS6A01G108700 chr3D 85.882 425 53 6 1 421 579032479 579032058 3.400000e-121 446.0
15 TraesCS6A01G108700 chr3D 85.849 424 46 9 1 420 274448335 274448748 5.690000e-119 438.0
16 TraesCS6A01G108700 chr1D 84.919 431 51 10 1 419 175038897 175039325 1.590000e-114 424.0
17 TraesCS6A01G108700 chr1A 84.941 425 53 8 1 421 552973749 552974166 2.060000e-113 420.0
18 TraesCS6A01G108700 chr1B 84.038 426 59 7 1 421 630254858 630255279 7.470000e-108 401.0
19 TraesCS6A01G108700 chr1B 87.368 95 7 2 1216 1305 314565709 314565615 2.360000e-18 104.0
20 TraesCS6A01G108700 chr1B 87.912 91 5 3 1220 1304 160321011 160321101 8.480000e-18 102.0
21 TraesCS6A01G108700 chr5D 90.526 95 4 3 1215 1305 383645314 383645407 2.340000e-23 121.0
22 TraesCS6A01G108700 chr7B 90.805 87 4 2 1223 1305 618428122 618428208 3.920000e-21 113.0
23 TraesCS6A01G108700 chr5B 89.773 88 4 2 1223 1305 149590395 149590482 1.820000e-19 108.0
24 TraesCS6A01G108700 chr5A 89.773 88 4 1 1223 1305 472578675 472578762 1.820000e-19 108.0
25 TraesCS6A01G108700 chr5A 80.882 68 12 1 449 515 10920496 10920563 9.000000e-03 52.8
26 TraesCS6A01G108700 chr4B 90.476 84 4 2 1226 1305 7037119 7037036 1.820000e-19 108.0
27 TraesCS6A01G108700 chr4B 90.476 84 4 1 1226 1305 454512801 454512884 1.820000e-19 108.0
28 TraesCS6A01G108700 chr2B 92.308 39 3 0 477 515 411501467 411501505 6.700000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G108700 chr6A 77532075 77536865 4790 False 8848.0 8848 100.0000 1 4791 1 chr6A.!!$F1 4790
1 TraesCS6A01G108700 chr6D 60542059 60546244 4185 False 2966.5 5096 90.8140 515 4786 2 chr6D.!!$F2 4271
2 TraesCS6A01G108700 chr6B 134820503 134824506 4003 False 985.6 2246 88.4714 517 4786 5 chr6B.!!$F1 4269

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 432 0.038526 AGTTTCGGCGTCGTGAGAAT 60.039 50.0 10.18 0.00 45.01 2.40 F
432 433 0.093026 GTTTCGGCGTCGTGAGAATG 59.907 55.0 10.18 0.00 45.01 2.67 F
499 500 0.179081 GAGAGGTATGTTGGGGACGC 60.179 60.0 0.00 0.00 0.00 5.19 F
1109 1131 0.321671 TCTCCCTTTCCTGTTCTGCG 59.678 55.0 0.00 0.00 0.00 5.18 F
2201 2267 0.032678 CGATCCATGCGCTAAGGAGT 59.967 55.0 18.15 9.07 34.40 3.85 F
2762 2839 0.180406 GTAGGGGATGCCGACAACAT 59.820 55.0 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1562 1616 1.154169 AATAAGCGCGTCGTCGTCA 60.154 52.632 8.43 0.0 39.49 4.35 R
1924 1982 1.722011 ACAATTACTCGGTGGCGAAG 58.278 50.000 0.00 0.0 0.00 3.79 R
2058 2119 2.533266 TGCTTCGAAGAAGAGCAACT 57.467 45.000 28.95 0.0 45.90 3.16 R
3096 3176 0.458669 CTGCAGCATTCCCCACAATC 59.541 55.000 0.00 0.0 0.00 2.67 R
3295 3377 0.238289 CAGTAAGGCACAAACGGCTG 59.762 55.000 0.00 0.0 41.70 4.85 R
4280 4385 0.250038 TGAGACCTCACTTGCTGCAC 60.250 55.000 0.00 0.0 34.14 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.354131 GGACCATGAGACGCTCTTC 57.646 57.895 0.00 1.28 0.00 2.87
19 20 0.526524 GGACCATGAGACGCTCTTCG 60.527 60.000 0.00 0.00 45.38 3.79
29 30 4.070552 GCTCTTCGTCCTGGGCGT 62.071 66.667 21.33 0.00 0.00 5.68
30 31 2.182030 CTCTTCGTCCTGGGCGTC 59.818 66.667 21.33 0.00 0.00 5.19
31 32 3.685214 CTCTTCGTCCTGGGCGTCG 62.685 68.421 21.33 12.63 0.00 5.12
32 33 4.796231 CTTCGTCCTGGGCGTCGG 62.796 72.222 21.33 8.14 0.00 4.79
43 44 4.223964 GCGTCGGCATCGGCTTTC 62.224 66.667 0.00 0.00 39.11 2.62
44 45 2.509336 CGTCGGCATCGGCTTTCT 60.509 61.111 0.00 0.00 39.11 2.52
45 46 2.517450 CGTCGGCATCGGCTTTCTC 61.517 63.158 0.00 0.00 39.11 2.87
46 47 2.174319 GTCGGCATCGGCTTTCTCC 61.174 63.158 0.00 0.00 40.87 3.71
47 48 2.187946 CGGCATCGGCTTTCTCCT 59.812 61.111 0.00 0.00 40.87 3.69
48 49 1.884926 CGGCATCGGCTTTCTCCTC 60.885 63.158 0.00 0.00 40.87 3.71
49 50 1.524849 GGCATCGGCTTTCTCCTCC 60.525 63.158 0.00 0.00 40.87 4.30
50 51 1.221840 GCATCGGCTTTCTCCTCCA 59.778 57.895 0.00 0.00 36.96 3.86
51 52 0.813210 GCATCGGCTTTCTCCTCCAG 60.813 60.000 0.00 0.00 36.96 3.86
52 53 0.813210 CATCGGCTTTCTCCTCCAGC 60.813 60.000 0.00 0.00 0.00 4.85
53 54 1.267574 ATCGGCTTTCTCCTCCAGCA 61.268 55.000 0.00 0.00 35.05 4.41
54 55 1.449246 CGGCTTTCTCCTCCAGCAG 60.449 63.158 0.00 0.00 35.05 4.24
55 56 1.748500 GGCTTTCTCCTCCAGCAGC 60.749 63.158 0.00 0.00 35.05 5.25
56 57 2.105466 GCTTTCTCCTCCAGCAGCG 61.105 63.158 0.00 0.00 33.45 5.18
57 58 1.294780 CTTTCTCCTCCAGCAGCGT 59.705 57.895 0.00 0.00 0.00 5.07
58 59 0.739112 CTTTCTCCTCCAGCAGCGTC 60.739 60.000 0.00 0.00 0.00 5.19
59 60 2.492449 TTTCTCCTCCAGCAGCGTCG 62.492 60.000 0.00 0.00 0.00 5.12
63 64 3.485431 CTCCAGCAGCGTCGCAAG 61.485 66.667 21.09 12.58 0.00 4.01
77 78 4.421479 CAAGCGCCTCCTCGTCGT 62.421 66.667 2.29 0.00 0.00 4.34
78 79 4.117661 AAGCGCCTCCTCGTCGTC 62.118 66.667 2.29 0.00 0.00 4.20
88 89 3.991999 TCGTCGTCCGAGTCCATT 58.008 55.556 0.00 0.00 41.60 3.16
89 90 1.504900 TCGTCGTCCGAGTCCATTG 59.495 57.895 0.00 0.00 41.60 2.82
90 91 2.158959 CGTCGTCCGAGTCCATTGC 61.159 63.158 0.00 0.00 39.56 3.56
91 92 1.810030 GTCGTCCGAGTCCATTGCC 60.810 63.158 0.00 0.00 0.00 4.52
92 93 2.885644 CGTCCGAGTCCATTGCCG 60.886 66.667 0.00 0.00 0.00 5.69
93 94 2.577059 GTCCGAGTCCATTGCCGA 59.423 61.111 0.00 0.00 0.00 5.54
94 95 1.519455 GTCCGAGTCCATTGCCGAG 60.519 63.158 0.00 0.00 0.00 4.63
95 96 2.892425 CCGAGTCCATTGCCGAGC 60.892 66.667 0.00 0.00 0.00 5.03
96 97 2.125552 CGAGTCCATTGCCGAGCA 60.126 61.111 0.00 0.00 36.47 4.26
97 98 2.169789 CGAGTCCATTGCCGAGCAG 61.170 63.158 0.00 0.00 40.61 4.24
98 99 1.219124 GAGTCCATTGCCGAGCAGA 59.781 57.895 0.00 0.00 40.61 4.26
99 100 1.078848 AGTCCATTGCCGAGCAGAC 60.079 57.895 7.97 7.97 40.61 3.51
100 101 1.375908 GTCCATTGCCGAGCAGACA 60.376 57.895 10.01 0.00 40.61 3.41
101 102 0.955428 GTCCATTGCCGAGCAGACAA 60.955 55.000 10.01 0.00 40.61 3.18
102 103 0.250684 TCCATTGCCGAGCAGACAAA 60.251 50.000 0.00 0.00 40.61 2.83
103 104 0.813184 CCATTGCCGAGCAGACAAAT 59.187 50.000 0.00 0.00 40.61 2.32
104 105 1.202222 CCATTGCCGAGCAGACAAATC 60.202 52.381 0.00 0.00 40.61 2.17
105 106 0.729116 ATTGCCGAGCAGACAAATCG 59.271 50.000 0.00 0.00 40.61 3.34
106 107 1.911293 TTGCCGAGCAGACAAATCGC 61.911 55.000 0.00 0.00 40.61 4.58
107 108 2.103042 GCCGAGCAGACAAATCGCT 61.103 57.895 0.00 0.00 37.40 4.93
108 109 1.712081 CCGAGCAGACAAATCGCTG 59.288 57.895 0.00 0.00 35.68 5.18
109 110 0.737367 CCGAGCAGACAAATCGCTGA 60.737 55.000 0.00 0.00 35.68 4.26
110 111 1.070821 CGAGCAGACAAATCGCTGAA 58.929 50.000 0.00 0.00 35.68 3.02
111 112 1.201855 CGAGCAGACAAATCGCTGAAC 60.202 52.381 0.00 0.00 35.68 3.18
112 113 1.800586 GAGCAGACAAATCGCTGAACA 59.199 47.619 0.00 0.00 35.68 3.18
113 114 2.417933 GAGCAGACAAATCGCTGAACAT 59.582 45.455 0.00 0.00 35.68 2.71
114 115 2.417933 AGCAGACAAATCGCTGAACATC 59.582 45.455 0.00 0.00 34.71 3.06
115 116 2.417933 GCAGACAAATCGCTGAACATCT 59.582 45.455 0.00 0.00 34.06 2.90
116 117 3.727079 GCAGACAAATCGCTGAACATCTG 60.727 47.826 0.00 0.00 36.30 2.90
117 118 3.005554 AGACAAATCGCTGAACATCTGG 58.994 45.455 0.00 0.00 0.00 3.86
118 119 1.470098 ACAAATCGCTGAACATCTGGC 59.530 47.619 0.00 0.00 0.00 4.85
119 120 1.469703 CAAATCGCTGAACATCTGGCA 59.530 47.619 0.00 0.00 0.00 4.92
120 121 1.376543 AATCGCTGAACATCTGGCAG 58.623 50.000 8.58 8.58 0.00 4.85
121 122 0.463295 ATCGCTGAACATCTGGCAGG 60.463 55.000 15.73 1.44 0.00 4.85
122 123 2.758089 CGCTGAACATCTGGCAGGC 61.758 63.158 15.73 7.12 0.00 4.85
123 124 2.758089 GCTGAACATCTGGCAGGCG 61.758 63.158 15.73 8.59 0.00 5.52
124 125 1.376424 CTGAACATCTGGCAGGCGT 60.376 57.895 15.73 9.28 0.00 5.68
125 126 1.642037 CTGAACATCTGGCAGGCGTG 61.642 60.000 15.73 13.42 0.00 5.34
126 127 2.360350 AACATCTGGCAGGCGTGG 60.360 61.111 15.73 2.64 0.00 4.94
127 128 3.196207 AACATCTGGCAGGCGTGGT 62.196 57.895 15.73 7.40 0.00 4.16
128 129 1.836999 AACATCTGGCAGGCGTGGTA 61.837 55.000 15.73 0.00 0.00 3.25
129 130 1.522355 CATCTGGCAGGCGTGGTAG 60.522 63.158 15.73 0.00 0.00 3.18
130 131 2.735772 ATCTGGCAGGCGTGGTAGG 61.736 63.158 15.73 0.00 0.00 3.18
149 150 4.849310 GCAGCCGCCGGTATTCCA 62.849 66.667 4.45 0.00 0.00 3.53
150 151 2.588877 CAGCCGCCGGTATTCCAG 60.589 66.667 4.45 0.00 0.00 3.86
151 152 4.547367 AGCCGCCGGTATTCCAGC 62.547 66.667 4.45 0.00 34.06 4.85
153 154 4.929707 CCGCCGGTATTCCAGCCC 62.930 72.222 1.90 0.00 33.87 5.19
154 155 3.861797 CGCCGGTATTCCAGCCCT 61.862 66.667 1.90 0.00 33.87 5.19
155 156 2.203209 GCCGGTATTCCAGCCCTG 60.203 66.667 1.90 0.00 31.39 4.45
156 157 2.203209 CCGGTATTCCAGCCCTGC 60.203 66.667 0.00 0.00 0.00 4.85
157 158 2.588877 CGGTATTCCAGCCCTGCG 60.589 66.667 0.00 0.00 0.00 5.18
158 159 2.590092 GGTATTCCAGCCCTGCGT 59.410 61.111 0.00 0.00 0.00 5.24
159 160 1.819632 GGTATTCCAGCCCTGCGTG 60.820 63.158 0.00 0.00 0.00 5.34
160 161 1.819632 GTATTCCAGCCCTGCGTGG 60.820 63.158 0.00 0.00 34.87 4.94
182 183 4.083862 AGCGACGGAAAGCTCCCC 62.084 66.667 0.00 0.00 39.98 4.81
183 184 4.388499 GCGACGGAAAGCTCCCCA 62.388 66.667 0.00 0.00 38.71 4.96
184 185 2.125512 CGACGGAAAGCTCCCCAG 60.126 66.667 5.36 1.39 38.71 4.45
185 186 2.269241 GACGGAAAGCTCCCCAGG 59.731 66.667 5.36 0.00 38.71 4.45
186 187 2.203938 ACGGAAAGCTCCCCAGGA 60.204 61.111 5.36 0.00 38.71 3.86
221 222 4.083862 GCGGCGGAACCCTCTCTT 62.084 66.667 9.78 0.00 33.26 2.85
222 223 2.663196 CGGCGGAACCCTCTCTTT 59.337 61.111 0.00 0.00 33.26 2.52
223 224 1.003718 CGGCGGAACCCTCTCTTTT 60.004 57.895 0.00 0.00 33.26 2.27
224 225 1.019805 CGGCGGAACCCTCTCTTTTC 61.020 60.000 0.00 0.00 33.26 2.29
225 226 0.677098 GGCGGAACCCTCTCTTTTCC 60.677 60.000 0.00 0.00 36.24 3.13
227 228 3.553109 GGAACCCTCTCTTTTCCGG 57.447 57.895 0.00 0.00 29.89 5.14
228 229 0.691332 GGAACCCTCTCTTTTCCGGT 59.309 55.000 0.00 0.00 29.89 5.28
229 230 1.610886 GGAACCCTCTCTTTTCCGGTG 60.611 57.143 0.00 0.00 29.89 4.94
230 231 0.400594 AACCCTCTCTTTTCCGGTGG 59.599 55.000 0.00 0.00 0.00 4.61
231 232 1.299976 CCCTCTCTTTTCCGGTGGG 59.700 63.158 0.00 0.00 0.00 4.61
232 233 1.299976 CCTCTCTTTTCCGGTGGGG 59.700 63.158 0.00 0.00 37.02 4.96
233 234 1.299976 CTCTCTTTTCCGGTGGGGG 59.700 63.158 0.00 0.00 36.01 5.40
234 235 1.151987 TCTCTTTTCCGGTGGGGGA 60.152 57.895 0.00 0.00 36.01 4.81
235 236 0.768997 TCTCTTTTCCGGTGGGGGAA 60.769 55.000 0.00 0.00 44.17 3.97
236 237 0.331616 CTCTTTTCCGGTGGGGGAAT 59.668 55.000 0.00 0.00 45.13 3.01
237 238 0.039035 TCTTTTCCGGTGGGGGAATG 59.961 55.000 0.00 0.00 45.13 2.67
238 239 0.970427 CTTTTCCGGTGGGGGAATGG 60.970 60.000 0.00 0.00 45.13 3.16
239 240 3.593771 TTTCCGGTGGGGGAATGGC 62.594 63.158 0.00 0.00 45.13 4.40
242 243 3.093835 CGGTGGGGGAATGGCCTA 61.094 66.667 3.32 0.00 36.66 3.93
243 244 2.601299 GGTGGGGGAATGGCCTAC 59.399 66.667 3.32 0.00 36.66 3.18
244 245 2.601299 GTGGGGGAATGGCCTACC 59.399 66.667 3.32 4.47 36.66 3.18
245 246 2.006991 GTGGGGGAATGGCCTACCT 61.007 63.158 3.32 0.00 35.52 3.08
246 247 0.696485 GTGGGGGAATGGCCTACCTA 60.696 60.000 3.32 0.00 35.52 3.08
247 248 0.046552 TGGGGGAATGGCCTACCTAA 59.953 55.000 3.32 0.00 35.52 2.69
248 249 0.477204 GGGGGAATGGCCTACCTAAC 59.523 60.000 3.32 0.35 36.63 2.34
249 250 0.108019 GGGGAATGGCCTACCTAACG 59.892 60.000 3.32 0.00 36.63 3.18
250 251 0.108019 GGGAATGGCCTACCTAACGG 59.892 60.000 3.32 0.00 36.63 4.44
251 252 0.534427 GGAATGGCCTACCTAACGGC 60.534 60.000 3.32 0.00 45.55 5.68
255 256 2.202837 GCCTACCTAACGGCGGTG 60.203 66.667 8.19 0.00 36.45 4.94
256 257 2.497770 CCTACCTAACGGCGGTGG 59.502 66.667 8.19 3.68 35.98 4.61
257 258 2.497770 CTACCTAACGGCGGTGGG 59.502 66.667 26.69 26.69 35.98 4.61
258 259 2.283821 TACCTAACGGCGGTGGGT 60.284 61.111 34.91 34.91 37.07 4.51
259 260 2.567564 CTACCTAACGGCGGTGGGTG 62.568 65.000 38.54 25.12 35.56 4.61
260 261 4.770874 CCTAACGGCGGTGGGTGG 62.771 72.222 20.25 6.44 0.00 4.61
261 262 4.770874 CTAACGGCGGTGGGTGGG 62.771 72.222 8.19 0.00 0.00 4.61
322 323 3.029981 GAGGGGGAGGGGGCAATT 61.030 66.667 0.00 0.00 0.00 2.32
323 324 2.540640 AGGGGGAGGGGGCAATTT 60.541 61.111 0.00 0.00 0.00 1.82
324 325 2.365502 GGGGGAGGGGGCAATTTG 60.366 66.667 0.00 0.00 0.00 2.32
325 326 2.365502 GGGGAGGGGGCAATTTGG 60.366 66.667 0.00 0.00 0.00 3.28
326 327 2.777146 GGGAGGGGGCAATTTGGA 59.223 61.111 0.00 0.00 0.00 3.53
327 328 1.685765 GGGAGGGGGCAATTTGGAC 60.686 63.158 0.00 0.00 0.00 4.02
328 329 2.052104 GGAGGGGGCAATTTGGACG 61.052 63.158 0.00 0.00 0.00 4.79
329 330 1.304134 GAGGGGGCAATTTGGACGT 60.304 57.895 0.00 0.00 0.00 4.34
330 331 1.595093 GAGGGGGCAATTTGGACGTG 61.595 60.000 0.00 0.00 0.00 4.49
331 332 2.261361 GGGGCAATTTGGACGTGC 59.739 61.111 0.00 0.00 37.55 5.34
332 333 2.569354 GGGGCAATTTGGACGTGCA 61.569 57.895 5.33 5.33 40.12 4.57
333 334 1.365633 GGGCAATTTGGACGTGCAA 59.634 52.632 19.24 19.24 40.12 4.08
334 335 0.667184 GGGCAATTTGGACGTGCAAG 60.667 55.000 21.86 12.33 40.12 4.01
335 336 0.313672 GGCAATTTGGACGTGCAAGA 59.686 50.000 21.86 13.64 40.12 3.02
336 337 1.067635 GGCAATTTGGACGTGCAAGAT 60.068 47.619 21.86 15.15 40.12 2.40
337 338 1.987770 GCAATTTGGACGTGCAAGATG 59.012 47.619 21.86 22.73 38.19 2.90
338 339 1.987770 CAATTTGGACGTGCAAGATGC 59.012 47.619 21.86 0.00 45.29 3.91
358 359 2.635444 CGTTTTCGCTTTACAGTGGTG 58.365 47.619 0.00 0.00 36.22 4.17
359 360 2.601266 CGTTTTCGCTTTACAGTGGTGG 60.601 50.000 0.00 0.00 36.22 4.61
360 361 0.948678 TTTCGCTTTACAGTGGTGGC 59.051 50.000 0.00 0.00 0.00 5.01
361 362 0.887387 TTCGCTTTACAGTGGTGGCC 60.887 55.000 0.00 0.00 0.00 5.36
362 363 2.332654 CGCTTTACAGTGGTGGCCC 61.333 63.158 0.00 0.00 0.00 5.80
363 364 1.228429 GCTTTACAGTGGTGGCCCA 60.228 57.895 0.00 0.00 38.87 5.36
364 365 1.244019 GCTTTACAGTGGTGGCCCAG 61.244 60.000 0.00 0.00 42.94 4.45
365 366 0.609131 CTTTACAGTGGTGGCCCAGG 60.609 60.000 0.00 0.00 42.94 4.45
366 367 2.706952 TTTACAGTGGTGGCCCAGGC 62.707 60.000 0.00 0.00 42.94 4.85
376 377 4.717629 GCCCAGGCGCGGTTTTTC 62.718 66.667 8.83 0.00 0.00 2.29
377 378 2.983592 CCCAGGCGCGGTTTTTCT 60.984 61.111 8.83 0.00 0.00 2.52
378 379 2.561037 CCCAGGCGCGGTTTTTCTT 61.561 57.895 8.83 0.00 0.00 2.52
379 380 1.362355 CCAGGCGCGGTTTTTCTTT 59.638 52.632 8.83 0.00 0.00 2.52
380 381 0.663269 CCAGGCGCGGTTTTTCTTTC 60.663 55.000 8.83 0.00 0.00 2.62
381 382 0.663269 CAGGCGCGGTTTTTCTTTCC 60.663 55.000 8.83 0.00 0.00 3.13
382 383 1.728074 GGCGCGGTTTTTCTTTCCG 60.728 57.895 8.83 0.00 45.94 4.30
385 386 4.526152 CGGTTTTTCTTTCCGCGG 57.474 55.556 22.12 22.12 37.90 6.46
386 387 1.081708 CGGTTTTTCTTTCCGCGGG 60.082 57.895 27.83 9.82 37.90 6.13
387 388 1.508808 CGGTTTTTCTTTCCGCGGGA 61.509 55.000 27.83 16.16 37.90 5.14
388 389 0.240145 GGTTTTTCTTTCCGCGGGAG 59.760 55.000 27.83 22.83 31.21 4.30
415 416 4.410400 GCCCCCAGTGCGCTAGTT 62.410 66.667 9.73 0.00 0.00 2.24
416 417 2.351276 CCCCCAGTGCGCTAGTTT 59.649 61.111 9.73 0.00 0.00 2.66
417 418 1.745489 CCCCCAGTGCGCTAGTTTC 60.745 63.158 9.73 0.00 0.00 2.78
418 419 2.100631 CCCCAGTGCGCTAGTTTCG 61.101 63.158 9.73 0.00 0.00 3.46
419 420 2.100631 CCCAGTGCGCTAGTTTCGG 61.101 63.158 9.73 0.00 0.00 4.30
420 421 2.740714 CCAGTGCGCTAGTTTCGGC 61.741 63.158 9.73 0.00 0.00 5.54
425 426 2.503375 CGCTAGTTTCGGCGTCGT 60.503 61.111 10.18 0.00 45.34 4.34
426 427 2.774951 CGCTAGTTTCGGCGTCGTG 61.775 63.158 10.18 0.00 45.34 4.35
427 428 1.443194 GCTAGTTTCGGCGTCGTGA 60.443 57.895 10.18 0.00 37.69 4.35
428 429 1.403972 GCTAGTTTCGGCGTCGTGAG 61.404 60.000 10.18 1.84 37.69 3.51
429 430 0.167470 CTAGTTTCGGCGTCGTGAGA 59.833 55.000 10.18 0.00 37.69 3.27
430 431 0.592637 TAGTTTCGGCGTCGTGAGAA 59.407 50.000 10.18 0.00 45.01 2.87
431 432 0.038526 AGTTTCGGCGTCGTGAGAAT 60.039 50.000 10.18 0.00 45.01 2.40
432 433 0.093026 GTTTCGGCGTCGTGAGAATG 59.907 55.000 10.18 0.00 45.01 2.67
433 434 1.623081 TTTCGGCGTCGTGAGAATGC 61.623 55.000 10.18 0.00 45.01 3.56
434 435 2.757155 TTCGGCGTCGTGAGAATGCA 62.757 55.000 10.18 0.00 45.01 3.96
435 436 2.379634 CGGCGTCGTGAGAATGCAA 61.380 57.895 0.00 0.00 45.01 4.08
436 437 1.132640 GGCGTCGTGAGAATGCAAC 59.867 57.895 0.00 0.00 45.01 4.17
437 438 1.291877 GGCGTCGTGAGAATGCAACT 61.292 55.000 0.00 0.00 45.01 3.16
438 439 0.179240 GCGTCGTGAGAATGCAACTG 60.179 55.000 0.00 0.00 45.01 3.16
439 440 0.439985 CGTCGTGAGAATGCAACTGG 59.560 55.000 0.00 0.00 45.01 4.00
440 441 1.795768 GTCGTGAGAATGCAACTGGA 58.204 50.000 0.00 0.00 45.01 3.86
441 442 1.728971 GTCGTGAGAATGCAACTGGAG 59.271 52.381 0.00 0.00 45.01 3.86
442 443 1.081892 CGTGAGAATGCAACTGGAGG 58.918 55.000 0.00 0.00 0.00 4.30
443 444 1.609061 CGTGAGAATGCAACTGGAGGT 60.609 52.381 0.00 0.00 0.00 3.85
444 445 2.508526 GTGAGAATGCAACTGGAGGTT 58.491 47.619 0.00 0.00 38.93 3.50
445 446 2.887152 GTGAGAATGCAACTGGAGGTTT 59.113 45.455 0.00 0.00 35.74 3.27
446 447 3.319122 GTGAGAATGCAACTGGAGGTTTT 59.681 43.478 0.00 0.00 35.74 2.43
447 448 3.960102 TGAGAATGCAACTGGAGGTTTTT 59.040 39.130 0.00 0.00 35.74 1.94
493 494 2.187958 TCACCCTGAGAGGTATGTTGG 58.812 52.381 0.00 0.00 38.39 3.77
494 495 1.210478 CACCCTGAGAGGTATGTTGGG 59.790 57.143 0.00 0.00 38.39 4.12
495 496 0.839946 CCCTGAGAGGTATGTTGGGG 59.160 60.000 0.00 0.00 31.93 4.96
496 497 1.625228 CCCTGAGAGGTATGTTGGGGA 60.625 57.143 0.00 0.00 34.94 4.81
497 498 1.486726 CCTGAGAGGTATGTTGGGGAC 59.513 57.143 0.00 0.00 0.00 4.46
498 499 1.137086 CTGAGAGGTATGTTGGGGACG 59.863 57.143 0.00 0.00 0.00 4.79
499 500 0.179081 GAGAGGTATGTTGGGGACGC 60.179 60.000 0.00 0.00 0.00 5.19
500 501 1.520787 GAGGTATGTTGGGGACGCG 60.521 63.158 3.53 3.53 0.00 6.01
501 502 1.952102 GAGGTATGTTGGGGACGCGA 61.952 60.000 15.93 0.00 0.00 5.87
502 503 1.520787 GGTATGTTGGGGACGCGAG 60.521 63.158 15.93 0.00 0.00 5.03
513 514 2.492090 ACGCGAGTGGAGATGCTC 59.508 61.111 15.93 0.00 46.97 4.26
519 520 2.035193 GCGAGTGGAGATGCTCTGATAA 59.965 50.000 0.00 0.00 0.00 1.75
528 529 2.550277 TGCTCTGATAAGGAGGGTCA 57.450 50.000 0.00 0.00 0.00 4.02
545 546 0.614697 TCACGAGGAGGAAGATGCCA 60.615 55.000 0.00 0.00 0.00 4.92
629 632 1.162698 GGCCCCTTAAAACTGACGTC 58.837 55.000 9.11 9.11 0.00 4.34
675 678 4.466827 TCTAGACGCTCTCTCTCTCTCTA 58.533 47.826 0.00 0.00 0.00 2.43
679 682 5.077564 AGACGCTCTCTCTCTCTCTATCTA 58.922 45.833 0.00 0.00 0.00 1.98
732 739 3.244700 CCTGAGACAGAGGTGGATTTTGT 60.245 47.826 0.00 0.00 32.44 2.83
843 850 2.426023 GATGACGGGCGCCCTAAT 59.574 61.111 41.01 30.07 0.00 1.73
860 867 6.602278 GCCCTAATTAGGATCAGGTTTTAGT 58.398 40.000 29.75 0.00 46.63 2.24
866 873 6.555463 TTAGGATCAGGTTTTAGTAGGTGG 57.445 41.667 0.00 0.00 0.00 4.61
931 947 1.501170 TCCCGATCATCTCCCTCTTCT 59.499 52.381 0.00 0.00 0.00 2.85
932 948 2.091055 TCCCGATCATCTCCCTCTTCTT 60.091 50.000 0.00 0.00 0.00 2.52
933 949 2.298729 CCCGATCATCTCCCTCTTCTTC 59.701 54.545 0.00 0.00 0.00 2.87
934 950 3.230134 CCGATCATCTCCCTCTTCTTCT 58.770 50.000 0.00 0.00 0.00 2.85
935 951 3.640967 CCGATCATCTCCCTCTTCTTCTT 59.359 47.826 0.00 0.00 0.00 2.52
936 952 4.261994 CCGATCATCTCCCTCTTCTTCTTC 60.262 50.000 0.00 0.00 0.00 2.87
942 958 6.500049 TCATCTCCCTCTTCTTCTTCTTCTTT 59.500 38.462 0.00 0.00 0.00 2.52
975 997 0.824109 AGGATTTCGTCTCCGCATCA 59.176 50.000 0.00 0.00 37.88 3.07
1086 1108 2.996621 CCATCAGGTTTCGTTCTCTCAC 59.003 50.000 0.00 0.00 0.00 3.51
1093 1115 0.879765 TTCGTTCTCTCACCCGTCTC 59.120 55.000 0.00 0.00 0.00 3.36
1109 1131 0.321671 TCTCCCTTTCCTGTTCTGCG 59.678 55.000 0.00 0.00 0.00 5.18
1116 1138 3.304057 CCTTTCCTGTTCTGCGTTCTTTC 60.304 47.826 0.00 0.00 0.00 2.62
1118 1140 2.483876 TCCTGTTCTGCGTTCTTTCTG 58.516 47.619 0.00 0.00 0.00 3.02
1119 1141 2.158957 TCCTGTTCTGCGTTCTTTCTGT 60.159 45.455 0.00 0.00 0.00 3.41
1120 1142 3.069016 TCCTGTTCTGCGTTCTTTCTGTA 59.931 43.478 0.00 0.00 0.00 2.74
1121 1143 3.807622 CCTGTTCTGCGTTCTTTCTGTAA 59.192 43.478 0.00 0.00 0.00 2.41
1130 1174 9.084164 TCTGCGTTCTTTCTGTAATAATTACTC 57.916 33.333 0.00 0.00 37.06 2.59
1236 1280 7.750947 AATATTAACCAACTACTCCCTCTGT 57.249 36.000 0.00 0.00 0.00 3.41
1237 1281 7.750947 ATATTAACCAACTACTCCCTCTGTT 57.249 36.000 0.00 0.00 0.00 3.16
1238 1282 5.899631 TTAACCAACTACTCCCTCTGTTT 57.100 39.130 0.00 0.00 0.00 2.83
1239 1283 4.353383 AACCAACTACTCCCTCTGTTTC 57.647 45.455 0.00 0.00 0.00 2.78
1240 1284 3.588569 ACCAACTACTCCCTCTGTTTCT 58.411 45.455 0.00 0.00 0.00 2.52
1241 1285 4.748701 ACCAACTACTCCCTCTGTTTCTA 58.251 43.478 0.00 0.00 0.00 2.10
1242 1286 5.152934 ACCAACTACTCCCTCTGTTTCTAA 58.847 41.667 0.00 0.00 0.00 2.10
1243 1287 5.605488 ACCAACTACTCCCTCTGTTTCTAAA 59.395 40.000 0.00 0.00 0.00 1.85
1244 1288 6.272558 ACCAACTACTCCCTCTGTTTCTAAAT 59.727 38.462 0.00 0.00 0.00 1.40
1245 1289 7.456902 ACCAACTACTCCCTCTGTTTCTAAATA 59.543 37.037 0.00 0.00 0.00 1.40
1246 1290 8.487028 CCAACTACTCCCTCTGTTTCTAAATAT 58.513 37.037 0.00 0.00 0.00 1.28
1252 1296 9.495382 ACTCCCTCTGTTTCTAAATATAAGTCT 57.505 33.333 0.00 0.00 0.00 3.24
1290 1334 8.744898 CGAATTACGTACGGATGTATATAGAC 57.255 38.462 21.06 0.00 37.22 2.59
1291 1335 8.382875 CGAATTACGTACGGATGTATATAGACA 58.617 37.037 21.06 2.07 37.22 3.41
1377 1421 0.610232 AATGGCCAGAAGTCTGCCAC 60.610 55.000 13.05 7.18 45.64 5.01
1402 1446 5.294306 TCAAGTGAGTGATCACAACAGTTTC 59.706 40.000 27.67 17.50 42.68 2.78
1404 1448 3.251004 GTGAGTGATCACAACAGTTTCCC 59.749 47.826 27.02 10.03 40.16 3.97
1405 1449 3.136443 TGAGTGATCACAACAGTTTCCCT 59.864 43.478 27.02 1.97 0.00 4.20
1406 1450 4.137543 GAGTGATCACAACAGTTTCCCTT 58.862 43.478 27.02 1.76 0.00 3.95
1407 1451 3.885297 AGTGATCACAACAGTTTCCCTTG 59.115 43.478 27.02 0.00 0.00 3.61
1408 1452 3.882888 GTGATCACAACAGTTTCCCTTGA 59.117 43.478 21.07 0.00 0.00 3.02
1409 1453 4.520492 GTGATCACAACAGTTTCCCTTGAT 59.480 41.667 21.07 0.00 0.00 2.57
1410 1454 5.010012 GTGATCACAACAGTTTCCCTTGATT 59.990 40.000 21.07 0.00 0.00 2.57
1411 1455 6.206634 GTGATCACAACAGTTTCCCTTGATTA 59.793 38.462 21.07 0.00 0.00 1.75
1412 1456 6.206634 TGATCACAACAGTTTCCCTTGATTAC 59.793 38.462 0.00 0.00 0.00 1.89
1413 1457 4.825085 TCACAACAGTTTCCCTTGATTACC 59.175 41.667 0.00 0.00 0.00 2.85
1414 1458 3.818773 ACAACAGTTTCCCTTGATTACCG 59.181 43.478 0.00 0.00 0.00 4.02
1415 1459 3.782656 ACAGTTTCCCTTGATTACCGT 57.217 42.857 0.00 0.00 0.00 4.83
1416 1460 3.671716 ACAGTTTCCCTTGATTACCGTC 58.328 45.455 0.00 0.00 0.00 4.79
1417 1461 3.326880 ACAGTTTCCCTTGATTACCGTCT 59.673 43.478 0.00 0.00 0.00 4.18
1418 1462 4.529377 ACAGTTTCCCTTGATTACCGTCTA 59.471 41.667 0.00 0.00 0.00 2.59
1419 1463 5.109903 CAGTTTCCCTTGATTACCGTCTAG 58.890 45.833 0.00 0.00 0.00 2.43
1454 1506 7.940688 TCATCATACATTCCTCATTTGCATAGT 59.059 33.333 0.00 0.00 0.00 2.12
1504 1558 7.770897 GTCTCCATACTTATTCACTGGATTTGT 59.229 37.037 0.00 0.00 35.55 2.83
1505 1559 7.987458 TCTCCATACTTATTCACTGGATTTGTC 59.013 37.037 0.00 0.00 35.55 3.18
1562 1616 1.207089 TCCGATGGAGCAGACGAATTT 59.793 47.619 0.00 0.00 0.00 1.82
1572 1626 1.055891 CAGACGAATTTGACGACGACG 59.944 52.381 5.58 5.58 45.75 5.12
1599 1653 2.262915 CCTCGGAAGCGCTGTCTT 59.737 61.111 12.58 0.00 0.00 3.01
1671 1725 2.270352 TGGTAGCCTGAAGTTTGTGG 57.730 50.000 0.00 0.00 0.00 4.17
1870 1928 3.436243 TCCTTTGTTTGTGTTGAAGGGT 58.564 40.909 0.00 0.00 37.92 4.34
1948 2007 2.933906 CGCCACCGAGTAATTGTTACAT 59.066 45.455 3.05 0.00 38.60 2.29
1955 2014 8.026607 CCACCGAGTAATTGTTACATTTTTCAT 58.973 33.333 0.00 0.00 38.60 2.57
2058 2119 1.754745 GCCCAACAGGTCTCACTCA 59.245 57.895 0.00 0.00 38.26 3.41
2071 2132 3.987220 GTCTCACTCAGTTGCTCTTCTTC 59.013 47.826 0.00 0.00 0.00 2.87
2080 2141 3.817647 AGTTGCTCTTCTTCGAAGCATTT 59.182 39.130 20.56 3.93 35.33 2.32
2087 2148 4.093408 TCTTCTTCGAAGCATTTTGATCCG 59.907 41.667 20.56 0.00 0.00 4.18
2089 2150 3.370978 TCTTCGAAGCATTTTGATCCGAC 59.629 43.478 20.56 0.00 0.00 4.79
2099 2160 3.520290 TTTGATCCGACTAGCATTCGT 57.480 42.857 0.00 0.00 34.56 3.85
2104 2165 4.277423 TGATCCGACTAGCATTCGTATTGA 59.723 41.667 0.00 0.00 34.56 2.57
2105 2166 4.848562 TCCGACTAGCATTCGTATTGAT 57.151 40.909 0.00 0.00 34.56 2.57
2106 2167 5.196341 TCCGACTAGCATTCGTATTGATT 57.804 39.130 0.00 0.00 34.56 2.57
2107 2168 6.321848 TCCGACTAGCATTCGTATTGATTA 57.678 37.500 0.00 0.00 34.56 1.75
2111 2177 7.328493 CCGACTAGCATTCGTATTGATTATGAA 59.672 37.037 0.00 0.00 39.54 2.57
2159 2225 3.696051 GCCTTCTGAATGCTACATTTGGA 59.304 43.478 9.95 0.00 0.00 3.53
2201 2267 0.032678 CGATCCATGCGCTAAGGAGT 59.967 55.000 18.15 9.07 34.40 3.85
2318 2384 1.405105 TGTGGCAAAACTGAGCAGAAC 59.595 47.619 4.21 0.00 0.00 3.01
2659 2736 6.308766 GCATAGTTTCGAATGATGTTTTGCTT 59.691 34.615 0.00 0.00 0.00 3.91
2762 2839 0.180406 GTAGGGGATGCCGACAACAT 59.820 55.000 0.00 0.00 0.00 2.71
2763 2840 0.468226 TAGGGGATGCCGACAACATC 59.532 55.000 0.00 0.00 42.62 3.06
2875 2952 2.280183 GCAATCGACGTAAGCTCTCTTG 59.720 50.000 0.00 0.00 45.62 3.02
2876 2953 3.502920 CAATCGACGTAAGCTCTCTTGT 58.497 45.455 0.00 0.00 45.62 3.16
2877 2954 4.659088 CAATCGACGTAAGCTCTCTTGTA 58.341 43.478 0.00 0.00 45.62 2.41
2884 2961 4.890581 ACGTAAGCTCTCTTGTAGATCCAT 59.109 41.667 0.00 0.00 45.62 3.41
2927 3004 4.433186 TTTCAGTGGTGTTGTTTGTGAG 57.567 40.909 0.00 0.00 0.00 3.51
2928 3005 3.342377 TCAGTGGTGTTGTTTGTGAGA 57.658 42.857 0.00 0.00 0.00 3.27
2931 3008 2.752903 AGTGGTGTTGTTTGTGAGAACC 59.247 45.455 0.00 0.00 30.79 3.62
2940 3017 6.038161 TGTTGTTTGTGAGAACCTAACAGATG 59.962 38.462 0.00 0.00 30.79 2.90
2985 3063 7.384477 TGGAAACATATTTCATGATTTGCACA 58.616 30.769 7.16 0.00 45.26 4.57
2986 3064 7.876582 TGGAAACATATTTCATGATTTGCACAA 59.123 29.630 7.16 0.00 45.26 3.33
3001 3079 9.421806 TGATTTGCACAAAAATATTACTTCCTG 57.578 29.630 0.00 0.00 33.56 3.86
3002 3080 7.650834 TTTGCACAAAAATATTACTTCCTGC 57.349 32.000 0.00 0.00 0.00 4.85
3006 3084 7.384660 TGCACAAAAATATTACTTCCTGCAAAG 59.615 33.333 0.00 0.00 0.00 2.77
3007 3085 7.598493 GCACAAAAATATTACTTCCTGCAAAGA 59.402 33.333 5.15 0.00 0.00 2.52
3008 3086 9.643693 CACAAAAATATTACTTCCTGCAAAGAT 57.356 29.630 5.15 0.00 0.00 2.40
3096 3176 5.295431 TCATCAGTGTTATTTTGCTTCCG 57.705 39.130 0.00 0.00 0.00 4.30
3198 3278 8.853077 ATTCTTATCAATCTTCTGTTCACACA 57.147 30.769 0.00 0.00 0.00 3.72
3241 3323 9.244292 GTATTTTTCTTGTAGGATCTTTCCCTT 57.756 33.333 0.00 0.00 43.76 3.95
3259 3341 2.009774 CTTGGAGTTGCAATAGGGTCG 58.990 52.381 0.59 0.00 0.00 4.79
3265 3347 1.127951 GTTGCAATAGGGTCGTCAACG 59.872 52.381 0.59 0.00 41.45 4.10
3295 3377 0.479378 TGTTTGGGGTAGGTTGGTCC 59.521 55.000 0.00 0.00 0.00 4.46
3297 3379 0.774908 TTTGGGGTAGGTTGGTCCAG 59.225 55.000 0.00 0.00 39.02 3.86
3357 3439 6.336842 AGCTATTGTTTTGCTGACAGATTT 57.663 33.333 6.65 0.00 35.54 2.17
3440 3522 4.768968 CCCATGGACTTGAACTTTCATCTT 59.231 41.667 15.22 0.00 37.00 2.40
3482 3564 1.288127 GACGGTACTGGTTGTCGCT 59.712 57.895 6.65 0.00 0.00 4.93
3530 3612 3.512033 ACTGGTAGCATTCTTCGAGAC 57.488 47.619 0.00 0.00 0.00 3.36
3536 3618 1.134848 AGCATTCTTCGAGACCTCTGC 60.135 52.381 0.00 0.00 0.00 4.26
3564 3646 4.997905 TTTGCGAGAATTCACTCTTCTG 57.002 40.909 8.44 0.00 33.18 3.02
3747 3829 7.417612 TCTTTCAGATCAAAAGCTTTACACAC 58.582 34.615 13.10 3.91 34.43 3.82
3748 3830 6.942532 TTCAGATCAAAAGCTTTACACACT 57.057 33.333 13.10 6.12 0.00 3.55
3847 3929 2.859165 AGCTACAAACAAGGCTGCTA 57.141 45.000 0.00 0.00 33.50 3.49
4122 4215 3.350833 AGGTCTTTCAAGTGCATCCATC 58.649 45.455 0.00 0.00 0.00 3.51
4220 4319 5.425217 TGTAGGCAGATTCTCTTGTTATGGA 59.575 40.000 0.00 0.00 0.00 3.41
4341 4447 7.771927 AGATCAATCAAAACATCAGGTTCTT 57.228 32.000 0.00 0.00 39.29 2.52
4383 4490 4.533919 ATTCAAACCCATCGAAATTGCA 57.466 36.364 0.00 0.00 0.00 4.08
4391 4498 3.489738 CCCATCGAAATTGCATCAACTCC 60.490 47.826 0.00 0.00 0.00 3.85
4392 4499 3.379372 CCATCGAAATTGCATCAACTCCT 59.621 43.478 0.00 0.00 0.00 3.69
4419 4526 6.909550 AGAGGCTTAGATGGTATACTTCTG 57.090 41.667 15.06 5.01 35.44 3.02
4438 4545 2.430332 CTGAGAGACCACCTGATTCCTC 59.570 54.545 0.00 0.00 0.00 3.71
4486 4599 0.962356 CCTTCGCAATCCAAGCAGGT 60.962 55.000 0.00 0.00 39.02 4.00
4508 4621 1.255667 TTAGGGTGCTCAGGACGTCC 61.256 60.000 27.67 27.67 0.00 4.79
4542 4655 3.751246 CCGCCAGGACGTCCGTAA 61.751 66.667 28.26 0.00 42.08 3.18
4543 4656 2.505557 CGCCAGGACGTCCGTAAC 60.506 66.667 28.26 17.64 42.08 2.50
4569 4682 3.993234 CCACGCGCATCATCTCGC 61.993 66.667 5.73 0.00 46.98 5.03
4614 4728 2.548057 TCACATCGCAACCTCAAACTTC 59.452 45.455 0.00 0.00 0.00 3.01
4649 4763 5.643777 AGTTTATCTTGCATGCTTAAGACGT 59.356 36.000 19.43 9.88 35.91 4.34
4671 4785 0.917533 ATGAGCATGAACAGGGAGCT 59.082 50.000 0.00 0.00 38.43 4.09
4672 4786 0.694771 TGAGCATGAACAGGGAGCTT 59.305 50.000 0.00 0.00 35.36 3.74
4675 4789 1.202976 AGCATGAACAGGGAGCTTTGT 60.203 47.619 0.00 0.00 29.98 2.83
4692 4806 6.672147 AGCTTTGTGACATCTATGTTTGAAC 58.328 36.000 0.00 0.00 41.95 3.18
4694 4808 6.580041 GCTTTGTGACATCTATGTTTGAACTG 59.420 38.462 0.00 0.00 41.95 3.16
4698 4812 6.207221 TGTGACATCTATGTTTGAACTGCAAT 59.793 34.615 0.00 0.00 41.95 3.56
4714 4828 8.236586 TGAACTGCAATGCTAGTTTAATTACAG 58.763 33.333 18.70 2.58 37.27 2.74
4758 4872 2.878406 TGGAAACAAGCAGCAGAACTAC 59.122 45.455 0.00 0.00 37.44 2.73
4768 4882 7.707035 ACAAGCAGCAGAACTACTTATATACAC 59.293 37.037 0.00 0.00 29.67 2.90
4786 4900 2.907042 ACACTGGCTTAGCTAGAACCTT 59.093 45.455 23.93 0.00 39.54 3.50
4787 4901 3.265791 CACTGGCTTAGCTAGAACCTTG 58.734 50.000 23.93 7.60 39.54 3.61
4788 4902 2.907042 ACTGGCTTAGCTAGAACCTTGT 59.093 45.455 23.93 0.00 39.54 3.16
4789 4903 3.055747 ACTGGCTTAGCTAGAACCTTGTC 60.056 47.826 23.93 0.00 39.54 3.18
4790 4904 2.903784 TGGCTTAGCTAGAACCTTGTCA 59.096 45.455 3.59 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.526524 CGAAGAGCGTCTCATGGTCC 60.527 60.000 9.09 0.00 32.32 4.46
1 2 2.950877 CGAAGAGCGTCTCATGGTC 58.049 57.895 9.09 0.00 32.06 4.02
12 13 3.991536 GACGCCCAGGACGAAGAGC 62.992 68.421 0.45 0.00 0.00 4.09
13 14 2.182030 GACGCCCAGGACGAAGAG 59.818 66.667 0.45 0.00 0.00 2.85
14 15 3.744719 CGACGCCCAGGACGAAGA 61.745 66.667 0.45 0.00 0.00 2.87
15 16 4.796231 CCGACGCCCAGGACGAAG 62.796 72.222 0.45 0.00 0.00 3.79
26 27 4.223964 GAAAGCCGATGCCGACGC 62.224 66.667 0.00 0.00 38.69 5.19
27 28 2.509336 AGAAAGCCGATGCCGACG 60.509 61.111 0.00 0.00 38.69 5.12
28 29 2.174319 GGAGAAAGCCGATGCCGAC 61.174 63.158 0.00 0.00 38.69 4.79
29 30 2.186903 GGAGAAAGCCGATGCCGA 59.813 61.111 0.00 0.00 38.69 5.54
30 31 1.884926 GAGGAGAAAGCCGATGCCG 60.885 63.158 0.00 0.00 38.69 5.69
31 32 1.524849 GGAGGAGAAAGCCGATGCC 60.525 63.158 0.00 0.00 38.69 4.40
32 33 0.813210 CTGGAGGAGAAAGCCGATGC 60.813 60.000 0.00 0.00 37.95 3.91
33 34 0.813210 GCTGGAGGAGAAAGCCGATG 60.813 60.000 0.00 0.00 0.00 3.84
34 35 1.267574 TGCTGGAGGAGAAAGCCGAT 61.268 55.000 0.00 0.00 36.05 4.18
35 36 1.892819 CTGCTGGAGGAGAAAGCCGA 61.893 60.000 0.00 0.00 35.31 5.54
36 37 1.449246 CTGCTGGAGGAGAAAGCCG 60.449 63.158 0.00 0.00 35.31 5.52
37 38 1.748500 GCTGCTGGAGGAGAAAGCC 60.749 63.158 0.00 0.00 35.31 4.35
38 39 2.105466 CGCTGCTGGAGGAGAAAGC 61.105 63.158 0.00 0.00 35.31 3.51
39 40 0.739112 GACGCTGCTGGAGGAGAAAG 60.739 60.000 0.00 0.00 35.31 2.62
40 41 1.293498 GACGCTGCTGGAGGAGAAA 59.707 57.895 0.00 0.00 35.31 2.52
41 42 2.973899 GACGCTGCTGGAGGAGAA 59.026 61.111 0.00 0.00 35.31 2.87
42 43 3.443925 CGACGCTGCTGGAGGAGA 61.444 66.667 0.00 0.00 35.31 3.71
46 47 3.485431 CTTGCGACGCTGCTGGAG 61.485 66.667 22.08 5.58 35.36 3.86
72 73 2.158959 GCAATGGACTCGGACGACG 61.159 63.158 0.00 0.00 46.11 5.12
73 74 1.810030 GGCAATGGACTCGGACGAC 60.810 63.158 0.00 0.00 0.00 4.34
74 75 2.577059 GGCAATGGACTCGGACGA 59.423 61.111 0.00 0.00 0.00 4.20
75 76 2.885644 CGGCAATGGACTCGGACG 60.886 66.667 0.00 0.00 0.00 4.79
76 77 1.519455 CTCGGCAATGGACTCGGAC 60.519 63.158 0.00 0.00 0.00 4.79
77 78 2.892640 CTCGGCAATGGACTCGGA 59.107 61.111 0.00 0.00 0.00 4.55
78 79 2.892425 GCTCGGCAATGGACTCGG 60.892 66.667 0.00 0.00 0.00 4.63
79 80 2.125552 TGCTCGGCAATGGACTCG 60.126 61.111 0.00 0.00 34.76 4.18
80 81 1.086634 GTCTGCTCGGCAATGGACTC 61.087 60.000 0.35 0.00 38.41 3.36
81 82 1.078848 GTCTGCTCGGCAATGGACT 60.079 57.895 0.35 0.00 38.41 3.85
82 83 0.955428 TTGTCTGCTCGGCAATGGAC 60.955 55.000 8.70 8.70 38.41 4.02
83 84 0.250684 TTTGTCTGCTCGGCAATGGA 60.251 50.000 0.35 0.00 38.41 3.41
84 85 0.813184 ATTTGTCTGCTCGGCAATGG 59.187 50.000 0.35 0.00 38.41 3.16
85 86 1.530441 CGATTTGTCTGCTCGGCAATG 60.530 52.381 0.35 0.00 38.41 2.82
86 87 0.729116 CGATTTGTCTGCTCGGCAAT 59.271 50.000 0.35 0.00 38.41 3.56
87 88 1.911293 GCGATTTGTCTGCTCGGCAA 61.911 55.000 0.35 0.00 38.41 4.52
88 89 2.390599 GCGATTTGTCTGCTCGGCA 61.391 57.895 0.00 0.00 36.92 5.69
89 90 2.103042 AGCGATTTGTCTGCTCGGC 61.103 57.895 0.00 0.00 32.44 5.54
90 91 0.737367 TCAGCGATTTGTCTGCTCGG 60.737 55.000 0.00 0.00 36.69 4.63
91 92 1.070821 TTCAGCGATTTGTCTGCTCG 58.929 50.000 0.00 0.00 36.69 5.03
92 93 1.800586 TGTTCAGCGATTTGTCTGCTC 59.199 47.619 0.00 0.00 36.69 4.26
93 94 1.882912 TGTTCAGCGATTTGTCTGCT 58.117 45.000 0.00 0.00 40.16 4.24
94 95 2.417933 AGATGTTCAGCGATTTGTCTGC 59.582 45.455 0.00 0.00 0.00 4.26
95 96 3.181513 CCAGATGTTCAGCGATTTGTCTG 60.182 47.826 0.00 0.00 33.46 3.51
96 97 3.005554 CCAGATGTTCAGCGATTTGTCT 58.994 45.455 0.00 0.00 0.00 3.41
97 98 2.476854 GCCAGATGTTCAGCGATTTGTC 60.477 50.000 0.00 0.00 0.00 3.18
98 99 1.470098 GCCAGATGTTCAGCGATTTGT 59.530 47.619 0.00 0.00 0.00 2.83
99 100 1.469703 TGCCAGATGTTCAGCGATTTG 59.530 47.619 0.00 0.00 0.00 2.32
100 101 1.741706 CTGCCAGATGTTCAGCGATTT 59.258 47.619 0.00 0.00 0.00 2.17
101 102 1.376543 CTGCCAGATGTTCAGCGATT 58.623 50.000 0.00 0.00 0.00 3.34
102 103 0.463295 CCTGCCAGATGTTCAGCGAT 60.463 55.000 0.00 0.00 0.00 4.58
103 104 1.078918 CCTGCCAGATGTTCAGCGA 60.079 57.895 0.00 0.00 0.00 4.93
104 105 2.758089 GCCTGCCAGATGTTCAGCG 61.758 63.158 0.00 0.00 0.00 5.18
105 106 2.758089 CGCCTGCCAGATGTTCAGC 61.758 63.158 0.00 0.00 0.00 4.26
106 107 1.376424 ACGCCTGCCAGATGTTCAG 60.376 57.895 0.00 0.00 0.00 3.02
107 108 1.672030 CACGCCTGCCAGATGTTCA 60.672 57.895 0.00 0.00 0.00 3.18
108 109 2.401766 CCACGCCTGCCAGATGTTC 61.402 63.158 0.00 0.00 0.00 3.18
109 110 1.836999 TACCACGCCTGCCAGATGTT 61.837 55.000 0.00 0.00 0.00 2.71
110 111 2.244117 CTACCACGCCTGCCAGATGT 62.244 60.000 0.00 0.00 0.00 3.06
111 112 1.522355 CTACCACGCCTGCCAGATG 60.522 63.158 0.00 0.00 0.00 2.90
112 113 2.735772 CCTACCACGCCTGCCAGAT 61.736 63.158 0.00 0.00 0.00 2.90
113 114 3.390521 CCTACCACGCCTGCCAGA 61.391 66.667 0.00 0.00 0.00 3.86
132 133 4.849310 TGGAATACCGGCGGCTGC 62.849 66.667 28.71 16.66 39.42 5.25
133 134 2.588877 CTGGAATACCGGCGGCTG 60.589 66.667 28.71 9.47 39.42 4.85
139 140 2.203209 GCAGGGCTGGAATACCGG 60.203 66.667 0.00 0.00 44.87 5.28
140 141 2.588877 CGCAGGGCTGGAATACCG 60.589 66.667 0.00 0.00 39.42 4.02
141 142 1.819632 CACGCAGGGCTGGAATACC 60.820 63.158 0.00 0.00 0.00 2.73
142 143 1.819632 CCACGCAGGGCTGGAATAC 60.820 63.158 0.00 0.00 31.74 1.89
143 144 2.589540 CCACGCAGGGCTGGAATA 59.410 61.111 0.00 0.00 31.74 1.75
162 163 2.881352 GAGCTTTCCGTCGCTCCG 60.881 66.667 0.00 0.00 45.21 4.63
165 166 4.083862 GGGGAGCTTTCCGTCGCT 62.084 66.667 0.00 0.00 39.61 4.93
166 167 4.388499 TGGGGAGCTTTCCGTCGC 62.388 66.667 0.00 0.00 0.00 5.19
167 168 2.125512 CTGGGGAGCTTTCCGTCG 60.126 66.667 0.00 0.00 0.00 5.12
168 169 2.245438 CTCCTGGGGAGCTTTCCGTC 62.245 65.000 0.34 0.00 43.29 4.79
169 170 2.203938 TCCTGGGGAGCTTTCCGT 60.204 61.111 0.00 0.00 0.00 4.69
170 171 2.586792 CTCCTGGGGAGCTTTCCG 59.413 66.667 0.34 0.00 43.29 4.30
204 205 3.607370 AAAGAGAGGGTTCCGCCGC 62.607 63.158 0.00 0.00 38.44 6.53
205 206 1.003718 AAAAGAGAGGGTTCCGCCG 60.004 57.895 0.00 0.00 38.44 6.46
206 207 0.677098 GGAAAAGAGAGGGTTCCGCC 60.677 60.000 0.00 0.00 32.03 6.13
207 208 2.855887 GGAAAAGAGAGGGTTCCGC 58.144 57.895 0.00 0.00 32.03 5.54
209 210 0.691332 ACCGGAAAAGAGAGGGTTCC 59.309 55.000 9.46 0.00 37.95 3.62
210 211 1.610886 CCACCGGAAAAGAGAGGGTTC 60.611 57.143 9.46 0.00 0.00 3.62
211 212 0.400594 CCACCGGAAAAGAGAGGGTT 59.599 55.000 9.46 0.00 0.00 4.11
212 213 1.489560 CCCACCGGAAAAGAGAGGGT 61.490 60.000 9.46 0.00 0.00 4.34
213 214 1.299976 CCCACCGGAAAAGAGAGGG 59.700 63.158 9.46 1.89 0.00 4.30
214 215 1.299976 CCCCACCGGAAAAGAGAGG 59.700 63.158 9.46 0.00 0.00 3.69
215 216 1.198759 TCCCCCACCGGAAAAGAGAG 61.199 60.000 9.46 0.00 0.00 3.20
216 217 0.768997 TTCCCCCACCGGAAAAGAGA 60.769 55.000 9.46 0.00 39.00 3.10
217 218 0.331616 ATTCCCCCACCGGAAAAGAG 59.668 55.000 9.46 0.00 44.97 2.85
218 219 0.039035 CATTCCCCCACCGGAAAAGA 59.961 55.000 9.46 0.00 44.97 2.52
219 220 0.970427 CCATTCCCCCACCGGAAAAG 60.970 60.000 9.46 0.00 44.97 2.27
220 221 1.077625 CCATTCCCCCACCGGAAAA 59.922 57.895 9.46 0.00 44.97 2.29
221 222 2.767352 CCATTCCCCCACCGGAAA 59.233 61.111 9.46 0.00 44.97 3.13
222 223 4.055227 GCCATTCCCCCACCGGAA 62.055 66.667 9.46 0.00 45.87 4.30
225 226 3.093835 TAGGCCATTCCCCCACCG 61.094 66.667 5.01 0.00 34.51 4.94
226 227 2.601299 GTAGGCCATTCCCCCACC 59.399 66.667 5.01 0.00 34.51 4.61
227 228 0.696485 TAGGTAGGCCATTCCCCCAC 60.696 60.000 5.01 0.00 37.19 4.61
228 229 0.046552 TTAGGTAGGCCATTCCCCCA 59.953 55.000 5.01 0.00 37.19 4.96
229 230 0.477204 GTTAGGTAGGCCATTCCCCC 59.523 60.000 5.01 0.00 37.19 5.40
230 231 0.108019 CGTTAGGTAGGCCATTCCCC 59.892 60.000 5.01 0.00 37.19 4.81
231 232 0.108019 CCGTTAGGTAGGCCATTCCC 59.892 60.000 5.01 0.00 37.19 3.97
232 233 3.700198 CCGTTAGGTAGGCCATTCC 57.300 57.895 5.01 3.86 37.19 3.01
239 240 2.497770 CCACCGCCGTTAGGTAGG 59.502 66.667 0.00 0.99 40.59 3.18
240 241 2.353610 ACCCACCGCCGTTAGGTAG 61.354 63.158 0.00 0.00 40.59 3.18
241 242 2.283821 ACCCACCGCCGTTAGGTA 60.284 61.111 0.00 0.00 40.59 3.08
242 243 4.011517 CACCCACCGCCGTTAGGT 62.012 66.667 0.00 0.00 43.97 3.08
243 244 4.770874 CCACCCACCGCCGTTAGG 62.771 72.222 0.00 0.00 41.62 2.69
244 245 4.770874 CCCACCCACCGCCGTTAG 62.771 72.222 0.00 0.00 0.00 2.34
305 306 2.636617 AAATTGCCCCCTCCCCCTC 61.637 63.158 0.00 0.00 0.00 4.30
306 307 2.540640 AAATTGCCCCCTCCCCCT 60.541 61.111 0.00 0.00 0.00 4.79
307 308 2.365502 CAAATTGCCCCCTCCCCC 60.366 66.667 0.00 0.00 0.00 5.40
308 309 2.365502 CCAAATTGCCCCCTCCCC 60.366 66.667 0.00 0.00 0.00 4.81
309 310 1.685765 GTCCAAATTGCCCCCTCCC 60.686 63.158 0.00 0.00 0.00 4.30
310 311 2.052104 CGTCCAAATTGCCCCCTCC 61.052 63.158 0.00 0.00 0.00 4.30
311 312 1.304134 ACGTCCAAATTGCCCCCTC 60.304 57.895 0.00 0.00 0.00 4.30
312 313 1.606313 CACGTCCAAATTGCCCCCT 60.606 57.895 0.00 0.00 0.00 4.79
313 314 2.969827 CACGTCCAAATTGCCCCC 59.030 61.111 0.00 0.00 0.00 5.40
314 315 2.093537 TTGCACGTCCAAATTGCCCC 62.094 55.000 0.00 0.00 35.26 5.80
315 316 0.667184 CTTGCACGTCCAAATTGCCC 60.667 55.000 0.00 0.00 35.26 5.36
316 317 0.313672 TCTTGCACGTCCAAATTGCC 59.686 50.000 0.00 0.00 35.26 4.52
317 318 1.987770 CATCTTGCACGTCCAAATTGC 59.012 47.619 0.00 0.00 36.76 3.56
318 319 1.987770 GCATCTTGCACGTCCAAATTG 59.012 47.619 0.00 0.00 44.26 2.32
319 320 1.401409 CGCATCTTGCACGTCCAAATT 60.401 47.619 0.00 0.00 45.36 1.82
320 321 0.168788 CGCATCTTGCACGTCCAAAT 59.831 50.000 0.00 0.00 45.36 2.32
321 322 1.163420 ACGCATCTTGCACGTCCAAA 61.163 50.000 0.00 0.00 45.36 3.28
322 323 1.163420 AACGCATCTTGCACGTCCAA 61.163 50.000 0.00 0.00 45.36 3.53
323 324 1.163420 AAACGCATCTTGCACGTCCA 61.163 50.000 0.00 0.00 45.36 4.02
324 325 0.040425 AAAACGCATCTTGCACGTCC 60.040 50.000 0.00 0.00 45.36 4.79
325 326 1.318251 GAAAACGCATCTTGCACGTC 58.682 50.000 0.00 0.00 45.36 4.34
326 327 0.384230 CGAAAACGCATCTTGCACGT 60.384 50.000 0.00 0.00 45.36 4.49
327 328 1.655697 GCGAAAACGCATCTTGCACG 61.656 55.000 9.66 0.00 45.36 5.34
328 329 0.385974 AGCGAAAACGCATCTTGCAC 60.386 50.000 16.32 0.00 45.36 4.57
329 330 0.310543 AAGCGAAAACGCATCTTGCA 59.689 45.000 16.32 0.00 45.36 4.08
330 331 1.408422 AAAGCGAAAACGCATCTTGC 58.592 45.000 16.32 0.00 40.69 4.01
331 332 3.550561 TGTAAAGCGAAAACGCATCTTG 58.449 40.909 16.32 0.00 37.35 3.02
332 333 3.250040 ACTGTAAAGCGAAAACGCATCTT 59.750 39.130 16.32 8.97 37.35 2.40
333 334 2.806244 ACTGTAAAGCGAAAACGCATCT 59.194 40.909 16.32 3.42 37.35 2.90
334 335 2.902484 CACTGTAAAGCGAAAACGCATC 59.098 45.455 16.32 4.85 37.35 3.91
335 336 2.350388 CCACTGTAAAGCGAAAACGCAT 60.350 45.455 16.32 1.86 37.35 4.73
336 337 1.003331 CCACTGTAAAGCGAAAACGCA 60.003 47.619 16.32 0.00 37.35 5.24
337 338 1.003223 ACCACTGTAAAGCGAAAACGC 60.003 47.619 6.50 6.50 0.00 4.84
338 339 2.601266 CCACCACTGTAAAGCGAAAACG 60.601 50.000 0.00 0.00 0.00 3.60
339 340 2.857104 GCCACCACTGTAAAGCGAAAAC 60.857 50.000 0.00 0.00 0.00 2.43
340 341 1.335496 GCCACCACTGTAAAGCGAAAA 59.665 47.619 0.00 0.00 0.00 2.29
341 342 0.948678 GCCACCACTGTAAAGCGAAA 59.051 50.000 0.00 0.00 0.00 3.46
342 343 0.887387 GGCCACCACTGTAAAGCGAA 60.887 55.000 0.00 0.00 0.00 4.70
343 344 1.302192 GGCCACCACTGTAAAGCGA 60.302 57.895 0.00 0.00 0.00 4.93
344 345 2.332654 GGGCCACCACTGTAAAGCG 61.333 63.158 4.39 0.00 36.50 4.68
345 346 1.228429 TGGGCCACCACTGTAAAGC 60.228 57.895 0.00 0.00 43.37 3.51
346 347 0.609131 CCTGGGCCACCACTGTAAAG 60.609 60.000 0.00 0.00 43.37 1.85
347 348 1.458486 CCTGGGCCACCACTGTAAA 59.542 57.895 0.00 0.00 43.37 2.01
348 349 3.166434 CCTGGGCCACCACTGTAA 58.834 61.111 0.00 0.00 43.37 2.41
349 350 3.646715 GCCTGGGCCACCACTGTA 61.647 66.667 0.00 0.00 43.37 2.74
359 360 4.717629 GAAAAACCGCGCCTGGGC 62.718 66.667 0.00 0.82 37.85 5.36
360 361 2.082629 AAAGAAAAACCGCGCCTGGG 62.083 55.000 0.00 0.00 0.00 4.45
361 362 0.663269 GAAAGAAAAACCGCGCCTGG 60.663 55.000 0.00 0.00 0.00 4.45
362 363 0.663269 GGAAAGAAAAACCGCGCCTG 60.663 55.000 0.00 0.00 0.00 4.85
363 364 1.658114 GGAAAGAAAAACCGCGCCT 59.342 52.632 0.00 0.00 0.00 5.52
364 365 1.728074 CGGAAAGAAAAACCGCGCC 60.728 57.895 0.00 0.00 40.19 6.53
365 366 3.823450 CGGAAAGAAAAACCGCGC 58.177 55.556 0.00 0.00 40.19 6.86
369 370 0.240145 CTCCCGCGGAAAGAAAAACC 59.760 55.000 30.73 0.00 0.00 3.27
370 371 0.386858 GCTCCCGCGGAAAGAAAAAC 60.387 55.000 30.73 6.52 0.00 2.43
371 372 1.520600 GGCTCCCGCGGAAAGAAAAA 61.521 55.000 30.73 0.00 36.88 1.94
372 373 1.969589 GGCTCCCGCGGAAAGAAAA 60.970 57.895 30.73 1.37 36.88 2.29
373 374 2.359478 GGCTCCCGCGGAAAGAAA 60.359 61.111 30.73 3.31 36.88 2.52
374 375 3.310860 GAGGCTCCCGCGGAAAGAA 62.311 63.158 30.73 5.29 36.88 2.52
375 376 3.771160 GAGGCTCCCGCGGAAAGA 61.771 66.667 30.73 15.15 36.88 2.52
376 377 4.840005 GGAGGCTCCCGCGGAAAG 62.840 72.222 30.73 24.00 36.88 2.62
399 400 1.745489 GAAACTAGCGCACTGGGGG 60.745 63.158 11.47 0.00 0.00 5.40
400 401 2.100631 CGAAACTAGCGCACTGGGG 61.101 63.158 11.47 0.00 0.00 4.96
401 402 2.100631 CCGAAACTAGCGCACTGGG 61.101 63.158 11.47 0.00 0.00 4.45
402 403 2.740714 GCCGAAACTAGCGCACTGG 61.741 63.158 11.47 2.03 0.00 4.00
403 404 2.778679 GCCGAAACTAGCGCACTG 59.221 61.111 11.47 0.71 0.00 3.66
404 405 2.809601 CGCCGAAACTAGCGCACT 60.810 61.111 11.47 0.00 46.50 4.40
409 410 1.403972 CTCACGACGCCGAAACTAGC 61.404 60.000 0.00 0.00 39.50 3.42
410 411 0.167470 TCTCACGACGCCGAAACTAG 59.833 55.000 0.00 0.00 39.50 2.57
411 412 0.592637 TTCTCACGACGCCGAAACTA 59.407 50.000 0.00 0.00 39.50 2.24
412 413 0.038526 ATTCTCACGACGCCGAAACT 60.039 50.000 0.00 0.00 39.50 2.66
413 414 0.093026 CATTCTCACGACGCCGAAAC 59.907 55.000 0.00 0.00 39.50 2.78
414 415 1.623081 GCATTCTCACGACGCCGAAA 61.623 55.000 0.00 0.00 39.50 3.46
415 416 2.092291 GCATTCTCACGACGCCGAA 61.092 57.895 0.00 0.00 39.50 4.30
416 417 2.506217 GCATTCTCACGACGCCGA 60.506 61.111 0.00 0.00 39.50 5.54
417 418 2.379634 TTGCATTCTCACGACGCCG 61.380 57.895 0.00 0.00 42.50 6.46
418 419 1.132640 GTTGCATTCTCACGACGCC 59.867 57.895 0.00 0.00 0.00 5.68
419 420 0.179240 CAGTTGCATTCTCACGACGC 60.179 55.000 0.00 0.00 0.00 5.19
420 421 0.439985 CCAGTTGCATTCTCACGACG 59.560 55.000 0.00 0.00 0.00 5.12
421 422 1.728971 CTCCAGTTGCATTCTCACGAC 59.271 52.381 0.00 0.00 0.00 4.34
422 423 1.338105 CCTCCAGTTGCATTCTCACGA 60.338 52.381 0.00 0.00 0.00 4.35
423 424 1.081892 CCTCCAGTTGCATTCTCACG 58.918 55.000 0.00 0.00 0.00 4.35
424 425 2.191128 ACCTCCAGTTGCATTCTCAC 57.809 50.000 0.00 0.00 0.00 3.51
425 426 2.957402 AACCTCCAGTTGCATTCTCA 57.043 45.000 0.00 0.00 37.29 3.27
426 427 4.590850 AAAAACCTCCAGTTGCATTCTC 57.409 40.909 0.00 0.00 39.19 2.87
467 468 4.351111 ACATACCTCTCAGGGTGAGTTTTT 59.649 41.667 3.92 0.00 44.58 1.94
468 469 3.910627 ACATACCTCTCAGGGTGAGTTTT 59.089 43.478 3.92 0.00 44.58 2.43
469 470 3.521727 ACATACCTCTCAGGGTGAGTTT 58.478 45.455 3.92 0.00 44.58 2.66
470 471 3.191888 ACATACCTCTCAGGGTGAGTT 57.808 47.619 3.92 0.00 44.58 3.01
471 472 2.834549 CAACATACCTCTCAGGGTGAGT 59.165 50.000 3.92 0.00 44.58 3.41
472 473 2.169352 CCAACATACCTCTCAGGGTGAG 59.831 54.545 0.00 0.00 45.59 3.51
473 474 2.187958 CCAACATACCTCTCAGGGTGA 58.812 52.381 0.00 0.00 40.58 4.02
474 475 1.210478 CCCAACATACCTCTCAGGGTG 59.790 57.143 0.00 0.00 40.58 4.61
475 476 1.584724 CCCAACATACCTCTCAGGGT 58.415 55.000 0.00 0.00 40.58 4.34
476 477 0.839946 CCCCAACATACCTCTCAGGG 59.160 60.000 0.00 0.00 40.58 4.45
477 478 1.486726 GTCCCCAACATACCTCTCAGG 59.513 57.143 0.00 0.00 42.49 3.86
478 479 1.137086 CGTCCCCAACATACCTCTCAG 59.863 57.143 0.00 0.00 0.00 3.35
479 480 1.191535 CGTCCCCAACATACCTCTCA 58.808 55.000 0.00 0.00 0.00 3.27
480 481 0.179081 GCGTCCCCAACATACCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
481 482 1.905512 GCGTCCCCAACATACCTCT 59.094 57.895 0.00 0.00 0.00 3.69
482 483 1.520787 CGCGTCCCCAACATACCTC 60.521 63.158 0.00 0.00 0.00 3.85
483 484 1.956629 CTCGCGTCCCCAACATACCT 61.957 60.000 5.77 0.00 0.00 3.08
484 485 1.520787 CTCGCGTCCCCAACATACC 60.521 63.158 5.77 0.00 0.00 2.73
485 486 1.082117 CACTCGCGTCCCCAACATAC 61.082 60.000 5.77 0.00 0.00 2.39
486 487 1.216977 CACTCGCGTCCCCAACATA 59.783 57.895 5.77 0.00 0.00 2.29
487 488 2.047274 CACTCGCGTCCCCAACAT 60.047 61.111 5.77 0.00 0.00 2.71
488 489 4.308458 CCACTCGCGTCCCCAACA 62.308 66.667 5.77 0.00 0.00 3.33
489 490 3.934391 CTCCACTCGCGTCCCCAAC 62.934 68.421 5.77 0.00 0.00 3.77
490 491 3.691342 CTCCACTCGCGTCCCCAA 61.691 66.667 5.77 0.00 0.00 4.12
491 492 3.957435 ATCTCCACTCGCGTCCCCA 62.957 63.158 5.77 0.00 0.00 4.96
492 493 3.148279 ATCTCCACTCGCGTCCCC 61.148 66.667 5.77 0.00 0.00 4.81
493 494 2.105128 CATCTCCACTCGCGTCCC 59.895 66.667 5.77 0.00 0.00 4.46
494 495 2.583593 GCATCTCCACTCGCGTCC 60.584 66.667 5.77 0.00 0.00 4.79
495 496 1.587613 GAGCATCTCCACTCGCGTC 60.588 63.158 5.77 0.00 0.00 5.19
496 497 2.492090 GAGCATCTCCACTCGCGT 59.508 61.111 5.77 0.00 0.00 6.01
507 508 2.968574 TGACCCTCCTTATCAGAGCATC 59.031 50.000 0.00 0.00 0.00 3.91
508 509 2.703007 GTGACCCTCCTTATCAGAGCAT 59.297 50.000 0.00 0.00 0.00 3.79
509 510 2.111384 GTGACCCTCCTTATCAGAGCA 58.889 52.381 0.00 0.00 0.00 4.26
510 511 1.067821 CGTGACCCTCCTTATCAGAGC 59.932 57.143 0.00 0.00 0.00 4.09
511 512 2.621055 CTCGTGACCCTCCTTATCAGAG 59.379 54.545 0.00 0.00 0.00 3.35
512 513 2.656002 CTCGTGACCCTCCTTATCAGA 58.344 52.381 0.00 0.00 0.00 3.27
513 514 1.683917 CCTCGTGACCCTCCTTATCAG 59.316 57.143 0.00 0.00 0.00 2.90
519 520 1.801302 TTCCTCCTCGTGACCCTCCT 61.801 60.000 0.00 0.00 0.00 3.69
528 529 0.250513 GTTGGCATCTTCCTCCTCGT 59.749 55.000 0.00 0.00 0.00 4.18
629 632 2.777692 ACTGGGAGAGTCTAGAGAGAGG 59.222 54.545 0.00 0.00 30.20 3.69
675 678 4.956700 TCGTGGTTTGGAAGAGAGATAGAT 59.043 41.667 0.00 0.00 0.00 1.98
679 682 2.028020 GGTCGTGGTTTGGAAGAGAGAT 60.028 50.000 0.00 0.00 0.00 2.75
843 850 6.027482 ACCACCTACTAAAACCTGATCCTAA 58.973 40.000 0.00 0.00 0.00 2.69
860 867 6.146510 CGAAATGCGCTTTTATATACCACCTA 59.853 38.462 19.83 0.00 0.00 3.08
932 948 7.712639 CCTCATGGATAAATCGAAAGAAGAAGA 59.287 37.037 0.00 0.00 38.82 2.87
933 949 7.712639 TCCTCATGGATAAATCGAAAGAAGAAG 59.287 37.037 0.00 0.00 39.99 2.85
934 950 7.564793 TCCTCATGGATAAATCGAAAGAAGAA 58.435 34.615 0.00 0.00 39.99 2.52
935 951 7.124573 TCCTCATGGATAAATCGAAAGAAGA 57.875 36.000 0.00 0.00 39.99 2.87
975 997 0.911769 TGATCCACGGATGAAAGCCT 59.088 50.000 2.54 0.00 43.22 4.58
1086 1108 0.036294 GAACAGGAAAGGGAGACGGG 60.036 60.000 0.00 0.00 0.00 5.28
1093 1115 0.875059 GAACGCAGAACAGGAAAGGG 59.125 55.000 0.00 0.00 0.00 3.95
1109 1131 7.767659 ACCGGGAGTAATTATTACAGAAAGAAC 59.232 37.037 16.23 0.00 38.60 3.01
1116 1138 5.218139 GTCGACCGGGAGTAATTATTACAG 58.782 45.833 16.23 5.67 38.60 2.74
1118 1140 4.550422 GGTCGACCGGGAGTAATTATTAC 58.450 47.826 20.85 6.99 36.38 1.89
1119 1141 3.573967 GGGTCGACCGGGAGTAATTATTA 59.426 47.826 27.68 0.00 36.71 0.98
1120 1142 2.366590 GGGTCGACCGGGAGTAATTATT 59.633 50.000 27.68 0.00 36.71 1.40
1121 1143 1.966354 GGGTCGACCGGGAGTAATTAT 59.034 52.381 27.68 0.00 36.71 1.28
1130 1174 1.003112 TTGATTTGGGTCGACCGGG 60.003 57.895 27.68 0.00 44.64 5.73
1265 1309 8.382875 TGTCTATATACATCCGTACGTAATTCG 58.617 37.037 15.21 0.00 46.00 3.34
1402 1446 4.499357 GCACTACTAGACGGTAATCAAGGG 60.499 50.000 0.00 0.00 0.00 3.95
1404 1448 5.244785 TGCACTACTAGACGGTAATCAAG 57.755 43.478 0.00 0.00 0.00 3.02
1405 1449 5.847111 ATGCACTACTAGACGGTAATCAA 57.153 39.130 0.00 0.00 0.00 2.57
1406 1450 5.358725 TGAATGCACTACTAGACGGTAATCA 59.641 40.000 0.00 0.00 0.00 2.57
1407 1451 5.828747 TGAATGCACTACTAGACGGTAATC 58.171 41.667 0.00 0.00 0.00 1.75
1408 1452 5.847111 TGAATGCACTACTAGACGGTAAT 57.153 39.130 0.00 0.00 0.00 1.89
1409 1453 5.358725 TGATGAATGCACTACTAGACGGTAA 59.641 40.000 0.00 0.00 0.00 2.85
1410 1454 4.885325 TGATGAATGCACTACTAGACGGTA 59.115 41.667 0.00 0.00 0.00 4.02
1411 1455 3.699538 TGATGAATGCACTACTAGACGGT 59.300 43.478 0.00 0.00 0.00 4.83
1412 1456 4.307443 TGATGAATGCACTACTAGACGG 57.693 45.455 0.00 0.00 0.00 4.79
1413 1457 6.438763 TGTATGATGAATGCACTACTAGACG 58.561 40.000 0.00 0.00 0.00 4.18
1414 1458 8.824159 AATGTATGATGAATGCACTACTAGAC 57.176 34.615 0.00 0.00 33.32 2.59
1415 1459 8.090831 GGAATGTATGATGAATGCACTACTAGA 58.909 37.037 0.00 0.00 33.32 2.43
1416 1460 8.093307 AGGAATGTATGATGAATGCACTACTAG 58.907 37.037 0.00 0.00 33.32 2.57
1417 1461 7.966812 AGGAATGTATGATGAATGCACTACTA 58.033 34.615 0.00 0.00 33.32 1.82
1418 1462 6.835174 AGGAATGTATGATGAATGCACTACT 58.165 36.000 0.00 0.00 33.32 2.57
1419 1463 6.707608 TGAGGAATGTATGATGAATGCACTAC 59.292 38.462 0.00 0.00 33.32 2.73
1460 1512 5.939883 TGGAGACACCAAATCAAGAATACAG 59.060 40.000 0.00 0.00 46.75 2.74
1504 1558 7.177832 TGTTCTATAGGAAAATCAACGAGGA 57.822 36.000 0.00 0.00 35.51 3.71
1505 1559 6.480320 CCTGTTCTATAGGAAAATCAACGAGG 59.520 42.308 0.00 2.32 37.52 4.63
1562 1616 1.154169 AATAAGCGCGTCGTCGTCA 60.154 52.632 8.43 0.00 39.49 4.35
1599 1653 2.203337 AAAGCCGCCAGTTCTGCA 60.203 55.556 0.00 0.00 0.00 4.41
1671 1725 2.287248 GGTTGAGCTTTGACTTGAGCAC 60.287 50.000 0.00 0.00 41.31 4.40
1718 1772 2.607187 GTCATGTCCTTGACGACGATT 58.393 47.619 0.00 0.00 36.93 3.34
1924 1982 1.722011 ACAATTACTCGGTGGCGAAG 58.278 50.000 0.00 0.00 0.00 3.79
1964 2023 8.805175 TGTTCAACAATATCAACAAGGATCATT 58.195 29.630 0.00 0.00 0.00 2.57
1965 2024 8.352137 TGTTCAACAATATCAACAAGGATCAT 57.648 30.769 0.00 0.00 0.00 2.45
1983 2042 8.460831 AGTAAAGTGTCAAATGTTTGTTCAAC 57.539 30.769 5.48 0.00 39.18 3.18
1984 2043 9.134734 GAAGTAAAGTGTCAAATGTTTGTTCAA 57.865 29.630 5.48 0.00 39.18 2.69
1996 2055 5.758296 CCTGCAGTAAGAAGTAAAGTGTCAA 59.242 40.000 13.81 0.00 0.00 3.18
2058 2119 2.533266 TGCTTCGAAGAAGAGCAACT 57.467 45.000 28.95 0.00 45.90 3.16
2071 2132 3.302740 GCTAGTCGGATCAAAATGCTTCG 60.303 47.826 0.00 0.00 0.00 3.79
2080 2141 4.848562 ATACGAATGCTAGTCGGATCAA 57.151 40.909 9.94 0.00 37.50 2.57
2111 2177 4.214545 CCAACTGCATGCACATGAAATTTT 59.785 37.500 18.46 0.00 41.20 1.82
2159 2225 5.118664 CGATATAATCAACTCGGTCGCATTT 59.881 40.000 0.00 0.00 0.00 2.32
2165 2231 5.950883 TGGATCGATATAATCAACTCGGTC 58.049 41.667 0.00 0.00 39.81 4.79
2201 2267 3.724374 CTGGACAACTCGTAACTTTCCA 58.276 45.455 0.00 0.00 0.00 3.53
2318 2384 2.787994 AGAATGGTCACCTTGCTGAAG 58.212 47.619 0.00 0.00 0.00 3.02
2704 2781 5.163385 CCTGGTCCAATCAAATGCACATATT 60.163 40.000 0.00 0.00 0.00 1.28
2762 2839 3.401033 TTGAAATGTCAGGAGCTTCGA 57.599 42.857 0.00 0.00 34.49 3.71
2763 2840 4.488126 TTTTGAAATGTCAGGAGCTTCG 57.512 40.909 0.00 0.00 34.49 3.79
2797 2874 2.037901 TGTCAAAATTGCAAGCCAGGA 58.962 42.857 4.94 0.00 0.00 3.86
2877 2954 9.331466 AGGTGTGTATAATCATCTAATGGATCT 57.669 33.333 0.00 0.00 31.27 2.75
2913 2990 4.396790 TGTTAGGTTCTCACAAACAACACC 59.603 41.667 0.00 0.00 31.06 4.16
2914 2991 5.353123 TCTGTTAGGTTCTCACAAACAACAC 59.647 40.000 0.00 0.00 32.74 3.32
2920 2997 4.713553 TGCATCTGTTAGGTTCTCACAAA 58.286 39.130 0.00 0.00 0.00 2.83
2923 3000 8.249327 CATATATGCATCTGTTAGGTTCTCAC 57.751 38.462 0.19 0.00 0.00 3.51
2940 3017 6.505044 TCCATGAGAACATTGCATATATGC 57.495 37.500 27.45 27.45 43.37 3.14
2951 3028 9.192642 TCATGAAATATGTTTCCATGAGAACAT 57.807 29.630 21.97 21.97 42.44 2.71
2982 3060 9.643693 ATCTTTGCAGGAAGTAATATTTTTGTG 57.356 29.630 0.00 0.00 0.00 3.33
3051 3131 2.572290 GCAACCGGTATATTCCAAGCT 58.428 47.619 8.00 0.00 0.00 3.74
3096 3176 0.458669 CTGCAGCATTCCCCACAATC 59.541 55.000 0.00 0.00 0.00 2.67
3188 3268 4.174411 TCTTACCGATCTGTGTGAACAG 57.826 45.455 0.00 0.00 39.00 3.16
3189 3269 4.801330 ATCTTACCGATCTGTGTGAACA 57.199 40.909 0.00 0.00 0.00 3.18
3190 3270 5.411781 AGAATCTTACCGATCTGTGTGAAC 58.588 41.667 0.00 0.00 0.00 3.18
3193 3273 5.171476 ACAAGAATCTTACCGATCTGTGTG 58.829 41.667 0.00 0.00 0.00 3.82
3194 3274 5.407407 ACAAGAATCTTACCGATCTGTGT 57.593 39.130 0.00 0.00 0.00 3.72
3196 3276 9.449719 AAAAATACAAGAATCTTACCGATCTGT 57.550 29.630 0.00 0.00 0.00 3.41
3197 3277 9.922305 GAAAAATACAAGAATCTTACCGATCTG 57.078 33.333 0.00 0.00 0.00 2.90
3198 3278 9.892130 AGAAAAATACAAGAATCTTACCGATCT 57.108 29.630 0.00 0.00 0.00 2.75
3201 3281 9.280174 ACAAGAAAAATACAAGAATCTTACCGA 57.720 29.630 0.00 0.00 0.00 4.69
3241 3323 0.981183 ACGACCCTATTGCAACTCCA 59.019 50.000 0.00 0.00 0.00 3.86
3259 3341 2.704725 ACATGGACATTTGCGTTGAC 57.295 45.000 0.00 0.00 0.00 3.18
3265 3347 1.347378 ACCCCAAACATGGACATTTGC 59.653 47.619 0.00 0.00 34.99 3.68
3295 3377 0.238289 CAGTAAGGCACAAACGGCTG 59.762 55.000 0.00 0.00 41.70 4.85
3297 3379 1.579429 CCAGTAAGGCACAAACGGC 59.421 57.895 0.00 0.00 0.00 5.68
3440 3522 1.374252 GAGGCTTGCGGTCTCGAAA 60.374 57.895 0.00 0.00 36.91 3.46
3526 3608 1.538950 CAAAAGCAAGGCAGAGGTCTC 59.461 52.381 0.00 0.00 0.00 3.36
3530 3612 1.080974 CGCAAAAGCAAGGCAGAGG 60.081 57.895 0.00 0.00 0.00 3.69
3536 3618 2.982470 GTGAATTCTCGCAAAAGCAAGG 59.018 45.455 7.05 0.00 31.98 3.61
3564 3646 6.393171 CCATCCTGGAAATTGAGAGAAAAAC 58.607 40.000 0.00 0.00 40.96 2.43
3876 3960 2.866762 CTCGCTTTCTTACTGGGTATGC 59.133 50.000 0.00 0.00 0.00 3.14
3879 3963 4.525487 TCTTTCTCGCTTTCTTACTGGGTA 59.475 41.667 0.00 0.00 0.00 3.69
4220 4319 5.596836 TCAACTTTCATTCTTTGCTGGTT 57.403 34.783 0.00 0.00 0.00 3.67
4280 4385 0.250038 TGAGACCTCACTTGCTGCAC 60.250 55.000 0.00 0.00 34.14 4.57
4334 4440 8.336235 TGATGGAATGGAATAAGTTAAGAACCT 58.664 33.333 0.00 0.00 0.00 3.50
4391 4498 8.644374 AAGTATACCATCTAAGCCTCTAAGAG 57.356 38.462 0.00 0.00 0.00 2.85
4392 4499 8.449625 AGAAGTATACCATCTAAGCCTCTAAGA 58.550 37.037 6.94 0.00 0.00 2.10
4419 4526 2.745968 AGAGGAATCAGGTGGTCTCTC 58.254 52.381 0.00 0.00 0.00 3.20
4438 4545 1.065126 CAAGGTAGCCAGGAGGGAAAG 60.065 57.143 0.00 0.00 40.01 2.62
4486 4599 0.320374 CGTCCTGAGCACCCTAAACA 59.680 55.000 0.00 0.00 0.00 2.83
4508 4621 2.461110 GGCATGCCTGGACGTTACG 61.461 63.158 29.98 2.19 0.00 3.18
4569 4682 2.231478 CCTACATATGGGAGTACTGCGG 59.769 54.545 8.41 0.00 0.00 5.69
4614 4728 8.474577 GCATGCAAGATAAACTGAATTAAATCG 58.525 33.333 14.21 0.00 0.00 3.34
4671 4785 6.039159 TGCAGTTCAAACATAGATGTCACAAA 59.961 34.615 0.00 0.00 40.80 2.83
4672 4786 5.530543 TGCAGTTCAAACATAGATGTCACAA 59.469 36.000 0.00 0.00 40.80 3.33
4675 4789 6.614160 CATTGCAGTTCAAACATAGATGTCA 58.386 36.000 0.00 0.00 40.80 3.58
4692 4806 8.615211 TCATCTGTAATTAAACTAGCATTGCAG 58.385 33.333 11.91 8.74 40.21 4.41
4694 4808 8.830580 TCTCATCTGTAATTAAACTAGCATTGC 58.169 33.333 0.00 0.00 0.00 3.56
4714 4828 9.784531 TCCAGGAATAAACAAGATATTCTCATC 57.215 33.333 6.32 0.00 38.96 2.92
4732 4846 1.891150 CTGCTGCTTGTTTCCAGGAAT 59.109 47.619 1.58 0.00 0.00 3.01
4736 4850 1.952296 AGTTCTGCTGCTTGTTTCCAG 59.048 47.619 0.00 0.00 0.00 3.86
4758 4872 8.030106 GGTTCTAGCTAAGCCAGTGTATATAAG 58.970 40.741 0.00 0.00 0.00 1.73
4768 4882 3.055819 TGACAAGGTTCTAGCTAAGCCAG 60.056 47.826 9.62 5.32 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.