Multiple sequence alignment - TraesCS6A01G108500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G108500 chr6A 100.000 2492 0 0 1 2492 77482487 77479996 0.000000e+00 4602
1 TraesCS6A01G108500 chr6A 96.907 291 9 0 1 291 77494779 77494489 2.880000e-134 488
2 TraesCS6A01G108500 chr6A 95.349 301 13 1 1 301 401923082 401922783 6.240000e-131 477
3 TraesCS6A01G108500 chr6A 95.614 114 5 0 289 402 77446868 77446755 1.520000e-42 183
4 TraesCS6A01G108500 chr5B 95.090 2220 93 2 289 2492 412257341 412255122 0.000000e+00 3482
5 TraesCS6A01G108500 chr5B 92.920 113 8 0 289 401 412243466 412243354 5.510000e-37 165
6 TraesCS6A01G108500 chr3A 94.324 2220 110 2 289 2492 49494291 49496510 0.000000e+00 3387
7 TraesCS6A01G108500 chr3A 97.222 288 8 0 1 288 153278771 153279058 2.880000e-134 488
8 TraesCS6A01G108500 chr3A 96.528 288 10 0 1 288 153259049 153259336 6.240000e-131 477
9 TraesCS6A01G108500 chr3A 94.690 113 6 0 289 401 49499363 49499475 2.550000e-40 176
10 TraesCS6A01G108500 chr7B 91.820 1687 117 12 824 2492 190779895 190781578 0.000000e+00 2331
11 TraesCS6A01G108500 chr7A 97.241 290 8 0 1 290 498867484 498867773 2.230000e-135 492
12 TraesCS6A01G108500 chr4A 96.528 288 10 0 1 288 447109154 447109441 6.240000e-131 477
13 TraesCS6A01G108500 chr2A 96.528 288 10 0 1 288 700129716 700129429 6.240000e-131 477
14 TraesCS6A01G108500 chr1A 96.220 291 11 0 1 291 496114356 496114066 6.240000e-131 477
15 TraesCS6A01G108500 chr5A 96.194 289 11 0 1 289 191605722 191606010 8.070000e-130 473


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G108500 chr6A 77479996 77482487 2491 True 4602.0 4602 100.000 1 2492 1 chr6A.!!$R2 2491
1 TraesCS6A01G108500 chr5B 412255122 412257341 2219 True 3482.0 3482 95.090 289 2492 1 chr5B.!!$R2 2203
2 TraesCS6A01G108500 chr3A 49494291 49499475 5184 False 1781.5 3387 94.507 289 2492 2 chr3A.!!$F3 2203
3 TraesCS6A01G108500 chr7B 190779895 190781578 1683 False 2331.0 2331 91.820 824 2492 1 chr7B.!!$F1 1668

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 446 0.098728 CCGTTTGCGCTTCCCTATTG 59.901 55.0 9.73 0.0 36.67 1.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1579 1596 0.323302 TAGAGACCATTTGCACGGCA 59.677 50.0 0.0 0.0 36.47 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.634163 AAAATGAAACTACGAAAACAAAAGTCT 57.366 25.926 0.00 0.00 0.00 3.24
33 34 9.634163 AAATGAAACTACGAAAACAAAAGTCTT 57.366 25.926 0.00 0.00 0.00 3.01
34 35 8.836959 ATGAAACTACGAAAACAAAAGTCTTC 57.163 30.769 0.00 0.00 0.00 2.87
35 36 8.036273 TGAAACTACGAAAACAAAAGTCTTCT 57.964 30.769 0.00 0.00 0.00 2.85
36 37 8.173130 TGAAACTACGAAAACAAAAGTCTTCTC 58.827 33.333 0.00 0.00 0.00 2.87
37 38 6.270096 ACTACGAAAACAAAAGTCTTCTCG 57.730 37.500 0.00 0.00 0.00 4.04
38 39 3.936661 ACGAAAACAAAAGTCTTCTCGC 58.063 40.909 0.00 0.00 0.00 5.03
39 40 3.621715 ACGAAAACAAAAGTCTTCTCGCT 59.378 39.130 0.00 0.00 0.00 4.93
40 41 4.094442 ACGAAAACAAAAGTCTTCTCGCTT 59.906 37.500 0.00 0.00 0.00 4.68
41 42 4.666618 CGAAAACAAAAGTCTTCTCGCTTC 59.333 41.667 0.00 0.00 0.00 3.86
42 43 5.560966 AAAACAAAAGTCTTCTCGCTTCA 57.439 34.783 0.00 0.00 0.00 3.02
43 44 5.757850 AAACAAAAGTCTTCTCGCTTCAT 57.242 34.783 0.00 0.00 0.00 2.57
44 45 4.739046 ACAAAAGTCTTCTCGCTTCATG 57.261 40.909 0.00 0.00 0.00 3.07
45 46 4.130118 ACAAAAGTCTTCTCGCTTCATGT 58.870 39.130 0.00 0.00 0.00 3.21
46 47 4.576463 ACAAAAGTCTTCTCGCTTCATGTT 59.424 37.500 0.00 0.00 0.00 2.71
47 48 4.999751 AAAGTCTTCTCGCTTCATGTTC 57.000 40.909 0.00 0.00 0.00 3.18
48 49 2.966050 AGTCTTCTCGCTTCATGTTCC 58.034 47.619 0.00 0.00 0.00 3.62
49 50 2.564947 AGTCTTCTCGCTTCATGTTCCT 59.435 45.455 0.00 0.00 0.00 3.36
50 51 3.007398 AGTCTTCTCGCTTCATGTTCCTT 59.993 43.478 0.00 0.00 0.00 3.36
51 52 3.124297 GTCTTCTCGCTTCATGTTCCTTG 59.876 47.826 0.00 0.00 0.00 3.61
52 53 3.006859 TCTTCTCGCTTCATGTTCCTTGA 59.993 43.478 0.00 0.00 0.00 3.02
53 54 3.401033 TCTCGCTTCATGTTCCTTGAA 57.599 42.857 0.00 0.00 0.00 2.69
54 55 3.738982 TCTCGCTTCATGTTCCTTGAAA 58.261 40.909 0.00 0.00 32.98 2.69
55 56 3.748048 TCTCGCTTCATGTTCCTTGAAAG 59.252 43.478 0.00 0.00 32.98 2.62
56 57 3.738982 TCGCTTCATGTTCCTTGAAAGA 58.261 40.909 0.00 0.00 32.98 2.52
57 58 4.133820 TCGCTTCATGTTCCTTGAAAGAA 58.866 39.130 0.00 0.00 32.98 2.52
58 59 4.761739 TCGCTTCATGTTCCTTGAAAGAAT 59.238 37.500 0.00 0.00 32.98 2.40
59 60 5.937540 TCGCTTCATGTTCCTTGAAAGAATA 59.062 36.000 0.00 0.00 32.98 1.75
60 61 6.024049 CGCTTCATGTTCCTTGAAAGAATAC 58.976 40.000 0.00 0.00 32.98 1.89
61 62 6.325596 GCTTCATGTTCCTTGAAAGAATACC 58.674 40.000 0.00 0.00 32.98 2.73
62 63 6.071952 GCTTCATGTTCCTTGAAAGAATACCA 60.072 38.462 0.00 0.00 32.98 3.25
63 64 7.523709 GCTTCATGTTCCTTGAAAGAATACCAA 60.524 37.037 0.00 0.00 32.98 3.67
64 65 7.452880 TCATGTTCCTTGAAAGAATACCAAG 57.547 36.000 0.00 0.00 37.58 3.61
65 66 7.004086 TCATGTTCCTTGAAAGAATACCAAGT 58.996 34.615 0.00 0.00 36.47 3.16
66 67 6.877611 TGTTCCTTGAAAGAATACCAAGTC 57.122 37.500 0.00 0.00 36.47 3.01
67 68 6.601332 TGTTCCTTGAAAGAATACCAAGTCT 58.399 36.000 0.00 0.00 36.47 3.24
68 69 7.060421 TGTTCCTTGAAAGAATACCAAGTCTT 58.940 34.615 0.00 0.00 41.62 3.01
69 70 7.228706 TGTTCCTTGAAAGAATACCAAGTCTTC 59.771 37.037 0.00 0.00 39.03 2.87
70 71 6.837312 TCCTTGAAAGAATACCAAGTCTTCA 58.163 36.000 0.00 0.00 39.03 3.02
71 72 7.287061 TCCTTGAAAGAATACCAAGTCTTCAA 58.713 34.615 0.00 0.00 39.03 2.69
72 73 7.445402 TCCTTGAAAGAATACCAAGTCTTCAAG 59.555 37.037 12.49 12.49 39.03 3.02
73 74 7.308830 CCTTGAAAGAATACCAAGTCTTCAAGG 60.309 40.741 20.30 20.30 45.38 3.61
74 75 6.601332 TGAAAGAATACCAAGTCTTCAAGGT 58.399 36.000 0.00 0.00 39.03 3.50
75 76 6.710744 TGAAAGAATACCAAGTCTTCAAGGTC 59.289 38.462 0.00 0.00 39.03 3.85
76 77 5.825593 AGAATACCAAGTCTTCAAGGTCA 57.174 39.130 0.00 0.00 35.62 4.02
77 78 5.552178 AGAATACCAAGTCTTCAAGGTCAC 58.448 41.667 0.00 0.00 35.62 3.67
78 79 4.974645 ATACCAAGTCTTCAAGGTCACA 57.025 40.909 0.00 0.00 35.62 3.58
79 80 2.919228 ACCAAGTCTTCAAGGTCACAC 58.081 47.619 0.00 0.00 0.00 3.82
80 81 2.222027 CCAAGTCTTCAAGGTCACACC 58.778 52.381 0.00 0.00 38.99 4.16
81 82 2.421388 CCAAGTCTTCAAGGTCACACCA 60.421 50.000 0.00 0.00 41.95 4.17
82 83 3.278574 CAAGTCTTCAAGGTCACACCAA 58.721 45.455 0.00 0.00 41.95 3.67
83 84 3.864789 AGTCTTCAAGGTCACACCAAT 57.135 42.857 0.00 0.00 41.95 3.16
84 85 4.170468 AGTCTTCAAGGTCACACCAATT 57.830 40.909 0.00 0.00 41.95 2.32
85 86 4.536765 AGTCTTCAAGGTCACACCAATTT 58.463 39.130 0.00 0.00 41.95 1.82
86 87 4.580580 AGTCTTCAAGGTCACACCAATTTC 59.419 41.667 0.00 0.00 41.95 2.17
87 88 4.580580 GTCTTCAAGGTCACACCAATTTCT 59.419 41.667 0.00 0.00 41.95 2.52
88 89 5.067805 GTCTTCAAGGTCACACCAATTTCTT 59.932 40.000 0.00 0.00 41.95 2.52
89 90 5.299279 TCTTCAAGGTCACACCAATTTCTTC 59.701 40.000 0.00 0.00 41.95 2.87
90 91 4.531854 TCAAGGTCACACCAATTTCTTCA 58.468 39.130 0.00 0.00 41.95 3.02
91 92 4.338118 TCAAGGTCACACCAATTTCTTCAC 59.662 41.667 0.00 0.00 41.95 3.18
92 93 4.170468 AGGTCACACCAATTTCTTCACT 57.830 40.909 0.00 0.00 41.95 3.41
93 94 4.536765 AGGTCACACCAATTTCTTCACTT 58.463 39.130 0.00 0.00 41.95 3.16
94 95 4.956075 AGGTCACACCAATTTCTTCACTTT 59.044 37.500 0.00 0.00 41.95 2.66
95 96 5.067805 AGGTCACACCAATTTCTTCACTTTC 59.932 40.000 0.00 0.00 41.95 2.62
96 97 5.163561 GGTCACACCAATTTCTTCACTTTCA 60.164 40.000 0.00 0.00 38.42 2.69
97 98 6.329496 GTCACACCAATTTCTTCACTTTCAA 58.671 36.000 0.00 0.00 0.00 2.69
98 99 6.811170 GTCACACCAATTTCTTCACTTTCAAA 59.189 34.615 0.00 0.00 0.00 2.69
99 100 7.009540 GTCACACCAATTTCTTCACTTTCAAAG 59.990 37.037 0.00 0.00 0.00 2.77
100 101 6.813152 CACACCAATTTCTTCACTTTCAAAGT 59.187 34.615 0.00 0.00 44.06 2.66
101 102 7.009540 CACACCAATTTCTTCACTTTCAAAGTC 59.990 37.037 0.00 0.00 40.46 3.01
102 103 7.093771 ACACCAATTTCTTCACTTTCAAAGTCT 60.094 33.333 0.00 0.00 40.46 3.24
103 104 7.761249 CACCAATTTCTTCACTTTCAAAGTCTT 59.239 33.333 0.00 0.00 40.46 3.01
104 105 7.976175 ACCAATTTCTTCACTTTCAAAGTCTTC 59.024 33.333 0.00 0.00 40.46 2.87
105 106 7.166473 CCAATTTCTTCACTTTCAAAGTCTTCG 59.834 37.037 0.00 0.00 40.46 3.79
106 107 5.734855 TTCTTCACTTTCAAAGTCTTCGG 57.265 39.130 0.00 0.00 40.46 4.30
107 108 5.018539 TCTTCACTTTCAAAGTCTTCGGA 57.981 39.130 0.00 0.00 40.46 4.55
108 109 5.424757 TCTTCACTTTCAAAGTCTTCGGAA 58.575 37.500 0.00 0.00 40.46 4.30
109 110 5.878116 TCTTCACTTTCAAAGTCTTCGGAAA 59.122 36.000 0.00 10.33 40.46 3.13
113 114 5.993106 CTTTCAAAGTCTTCGGAAAGTCT 57.007 39.130 20.88 0.00 40.64 3.24
114 115 6.364945 CTTTCAAAGTCTTCGGAAAGTCTT 57.635 37.500 20.88 0.00 40.92 3.01
115 116 5.986004 TTCAAAGTCTTCGGAAAGTCTTC 57.014 39.130 0.00 0.00 39.11 2.87
116 117 5.018539 TCAAAGTCTTCGGAAAGTCTTCA 57.981 39.130 0.00 0.00 39.11 3.02
117 118 5.050490 TCAAAGTCTTCGGAAAGTCTTCAG 58.950 41.667 0.00 0.00 39.11 3.02
118 119 4.939052 AAGTCTTCGGAAAGTCTTCAGA 57.061 40.909 0.00 0.00 36.53 3.27
119 120 4.939052 AGTCTTCGGAAAGTCTTCAGAA 57.061 40.909 0.00 1.51 41.56 3.02
120 121 5.476091 AGTCTTCGGAAAGTCTTCAGAAT 57.524 39.130 1.80 0.00 42.45 2.40
121 122 6.591750 AGTCTTCGGAAAGTCTTCAGAATA 57.408 37.500 1.80 0.00 42.45 1.75
122 123 6.391537 AGTCTTCGGAAAGTCTTCAGAATAC 58.608 40.000 7.63 7.63 42.45 1.89
123 124 5.577554 GTCTTCGGAAAGTCTTCAGAATACC 59.422 44.000 1.80 0.00 42.45 2.73
124 125 5.245301 TCTTCGGAAAGTCTTCAGAATACCA 59.755 40.000 1.80 0.00 42.45 3.25
125 126 5.477607 TCGGAAAGTCTTCAGAATACCAA 57.522 39.130 0.00 0.00 33.51 3.67
126 127 5.860611 TCGGAAAGTCTTCAGAATACCAAA 58.139 37.500 0.00 0.00 33.51 3.28
127 128 5.932303 TCGGAAAGTCTTCAGAATACCAAAG 59.068 40.000 0.00 0.00 33.51 2.77
128 129 5.701290 CGGAAAGTCTTCAGAATACCAAAGT 59.299 40.000 0.00 0.00 32.75 2.66
129 130 6.128526 CGGAAAGTCTTCAGAATACCAAAGTC 60.129 42.308 0.00 0.00 32.75 3.01
130 131 6.937465 GGAAAGTCTTCAGAATACCAAAGTCT 59.063 38.462 0.00 0.00 32.75 3.24
131 132 7.445707 GGAAAGTCTTCAGAATACCAAAGTCTT 59.554 37.037 0.00 0.00 32.75 3.01
132 133 9.490379 GAAAGTCTTCAGAATACCAAAGTCTTA 57.510 33.333 0.00 0.00 30.55 2.10
133 134 9.847224 AAAGTCTTCAGAATACCAAAGTCTTAA 57.153 29.630 0.00 0.00 30.55 1.85
134 135 9.495572 AAGTCTTCAGAATACCAAAGTCTTAAG 57.504 33.333 0.00 0.00 29.49 1.85
135 136 8.652290 AGTCTTCAGAATACCAAAGTCTTAAGT 58.348 33.333 1.63 0.00 28.96 2.24
136 137 8.927721 GTCTTCAGAATACCAAAGTCTTAAGTC 58.072 37.037 1.63 0.00 28.96 3.01
137 138 7.813148 TCTTCAGAATACCAAAGTCTTAAGTCG 59.187 37.037 1.63 0.00 28.96 4.18
138 139 7.223260 TCAGAATACCAAAGTCTTAAGTCGA 57.777 36.000 1.63 0.00 0.00 4.20
139 140 7.663827 TCAGAATACCAAAGTCTTAAGTCGAA 58.336 34.615 1.63 0.00 0.00 3.71
140 141 7.813148 TCAGAATACCAAAGTCTTAAGTCGAAG 59.187 37.037 1.63 0.00 0.00 3.79
141 142 7.813148 CAGAATACCAAAGTCTTAAGTCGAAGA 59.187 37.037 1.63 0.00 32.97 2.87
142 143 8.532819 AGAATACCAAAGTCTTAAGTCGAAGAT 58.467 33.333 1.63 0.00 40.67 2.40
143 144 9.798994 GAATACCAAAGTCTTAAGTCGAAGATA 57.201 33.333 1.63 0.00 40.67 1.98
146 147 8.705048 ACCAAAGTCTTAAGTCGAAGATATTC 57.295 34.615 1.63 0.00 40.67 1.75
147 148 8.311836 ACCAAAGTCTTAAGTCGAAGATATTCA 58.688 33.333 1.63 0.00 40.67 2.57
148 149 9.319143 CCAAAGTCTTAAGTCGAAGATATTCAT 57.681 33.333 1.63 0.00 40.67 2.57
158 159 9.449719 AAGTCGAAGATATTCATTTTTAGTGGT 57.550 29.630 0.35 0.00 40.67 4.16
159 160 9.099454 AGTCGAAGATATTCATTTTTAGTGGTC 57.901 33.333 0.35 0.00 40.67 4.02
160 161 8.056571 GTCGAAGATATTCATTTTTAGTGGTCG 58.943 37.037 0.35 0.00 40.67 4.79
161 162 7.977293 TCGAAGATATTCATTTTTAGTGGTCGA 59.023 33.333 0.35 0.00 0.00 4.20
162 163 8.056571 CGAAGATATTCATTTTTAGTGGTCGAC 58.943 37.037 7.13 7.13 0.00 4.20
163 164 9.099454 GAAGATATTCATTTTTAGTGGTCGACT 57.901 33.333 16.46 0.00 38.88 4.18
164 165 9.449719 AAGATATTCATTTTTAGTGGTCGACTT 57.550 29.630 16.46 4.32 35.96 3.01
165 166 9.449719 AGATATTCATTTTTAGTGGTCGACTTT 57.550 29.630 16.46 3.95 35.96 2.66
168 169 6.308371 TCATTTTTAGTGGTCGACTTTTCC 57.692 37.500 16.46 0.00 35.96 3.13
169 170 6.059484 TCATTTTTAGTGGTCGACTTTTCCT 58.941 36.000 16.46 6.84 35.96 3.36
170 171 5.744666 TTTTTAGTGGTCGACTTTTCCTG 57.255 39.130 16.46 0.00 35.96 3.86
171 172 4.411256 TTTAGTGGTCGACTTTTCCTGT 57.589 40.909 16.46 0.00 35.96 4.00
172 173 5.534207 TTTAGTGGTCGACTTTTCCTGTA 57.466 39.130 16.46 0.00 35.96 2.74
173 174 5.534207 TTAGTGGTCGACTTTTCCTGTAA 57.466 39.130 16.46 0.00 35.96 2.41
174 175 4.411256 AGTGGTCGACTTTTCCTGTAAA 57.589 40.909 16.46 0.00 0.00 2.01
175 176 4.969484 AGTGGTCGACTTTTCCTGTAAAT 58.031 39.130 16.46 0.00 0.00 1.40
176 177 6.105397 AGTGGTCGACTTTTCCTGTAAATA 57.895 37.500 16.46 0.00 0.00 1.40
177 178 6.708285 AGTGGTCGACTTTTCCTGTAAATAT 58.292 36.000 16.46 0.00 0.00 1.28
178 179 6.817140 AGTGGTCGACTTTTCCTGTAAATATC 59.183 38.462 16.46 0.00 0.00 1.63
179 180 6.592607 GTGGTCGACTTTTCCTGTAAATATCA 59.407 38.462 16.46 0.00 0.00 2.15
180 181 7.118680 GTGGTCGACTTTTCCTGTAAATATCAA 59.881 37.037 16.46 0.00 0.00 2.57
181 182 7.662258 TGGTCGACTTTTCCTGTAAATATCAAA 59.338 33.333 16.46 0.00 0.00 2.69
182 183 7.961283 GGTCGACTTTTCCTGTAAATATCAAAC 59.039 37.037 16.46 0.00 0.00 2.93
183 184 8.718734 GTCGACTTTTCCTGTAAATATCAAACT 58.281 33.333 8.70 0.00 0.00 2.66
184 185 8.932791 TCGACTTTTCCTGTAAATATCAAACTC 58.067 33.333 0.00 0.00 0.00 3.01
185 186 8.175716 CGACTTTTCCTGTAAATATCAAACTCC 58.824 37.037 0.00 0.00 0.00 3.85
186 187 9.232473 GACTTTTCCTGTAAATATCAAACTCCT 57.768 33.333 0.00 0.00 0.00 3.69
187 188 9.232473 ACTTTTCCTGTAAATATCAAACTCCTC 57.768 33.333 0.00 0.00 0.00 3.71
188 189 9.231297 CTTTTCCTGTAAATATCAAACTCCTCA 57.769 33.333 0.00 0.00 0.00 3.86
189 190 9.753674 TTTTCCTGTAAATATCAAACTCCTCAT 57.246 29.630 0.00 0.00 0.00 2.90
192 193 9.434275 TCCTGTAAATATCAAACTCCTCATAGA 57.566 33.333 0.00 0.00 0.00 1.98
193 194 9.482627 CCTGTAAATATCAAACTCCTCATAGAC 57.517 37.037 0.00 0.00 0.00 2.59
202 203 8.466617 TCAAACTCCTCATAGACTTATAGACC 57.533 38.462 0.00 0.00 0.00 3.85
203 204 8.282982 TCAAACTCCTCATAGACTTATAGACCT 58.717 37.037 0.00 0.00 0.00 3.85
204 205 9.575868 CAAACTCCTCATAGACTTATAGACCTA 57.424 37.037 0.00 0.00 0.00 3.08
206 207 9.747898 AACTCCTCATAGACTTATAGACCTATG 57.252 37.037 0.00 0.00 39.63 2.23
207 208 8.896658 ACTCCTCATAGACTTATAGACCTATGT 58.103 37.037 0.00 0.00 39.41 2.29
210 211 9.961264 CCTCATAGACTTATAGACCTATGTACA 57.039 37.037 0.00 0.00 39.41 2.90
215 216 8.680039 AGACTTATAGACCTATGTACACTCAC 57.320 38.462 0.00 0.00 0.00 3.51
216 217 8.272889 AGACTTATAGACCTATGTACACTCACA 58.727 37.037 0.00 0.00 0.00 3.58
217 218 8.818622 ACTTATAGACCTATGTACACTCACAA 57.181 34.615 0.00 0.00 30.84 3.33
218 219 9.251440 ACTTATAGACCTATGTACACTCACAAA 57.749 33.333 0.00 0.00 30.84 2.83
221 222 5.178797 AGACCTATGTACACTCACAAATGC 58.821 41.667 0.00 0.00 30.84 3.56
222 223 4.905429 ACCTATGTACACTCACAAATGCA 58.095 39.130 0.00 0.00 30.84 3.96
223 224 5.500234 ACCTATGTACACTCACAAATGCAT 58.500 37.500 0.00 0.00 30.84 3.96
224 225 5.945784 ACCTATGTACACTCACAAATGCATT 59.054 36.000 5.99 5.99 30.84 3.56
225 226 7.109501 ACCTATGTACACTCACAAATGCATTA 58.890 34.615 13.39 0.00 30.84 1.90
226 227 7.280876 ACCTATGTACACTCACAAATGCATTAG 59.719 37.037 13.39 8.87 30.84 1.73
227 228 7.280876 CCTATGTACACTCACAAATGCATTAGT 59.719 37.037 13.39 9.56 30.84 2.24
228 229 6.480524 TGTACACTCACAAATGCATTAGTC 57.519 37.500 13.39 1.83 0.00 2.59
229 230 5.411361 TGTACACTCACAAATGCATTAGTCC 59.589 40.000 13.39 3.71 0.00 3.85
230 231 3.758554 ACACTCACAAATGCATTAGTCCC 59.241 43.478 13.39 0.00 0.00 4.46
231 232 4.012374 CACTCACAAATGCATTAGTCCCT 58.988 43.478 13.39 0.00 0.00 4.20
232 233 4.460382 CACTCACAAATGCATTAGTCCCTT 59.540 41.667 13.39 0.00 0.00 3.95
233 234 5.647658 CACTCACAAATGCATTAGTCCCTTA 59.352 40.000 13.39 0.00 0.00 2.69
234 235 6.150976 CACTCACAAATGCATTAGTCCCTTAA 59.849 38.462 13.39 0.00 0.00 1.85
235 236 6.151144 ACTCACAAATGCATTAGTCCCTTAAC 59.849 38.462 13.39 0.00 0.00 2.01
236 237 5.417580 TCACAAATGCATTAGTCCCTTAACC 59.582 40.000 13.39 0.00 0.00 2.85
237 238 5.418840 CACAAATGCATTAGTCCCTTAACCT 59.581 40.000 13.39 0.00 0.00 3.50
238 239 6.601613 CACAAATGCATTAGTCCCTTAACCTA 59.398 38.462 13.39 0.00 0.00 3.08
239 240 7.285401 CACAAATGCATTAGTCCCTTAACCTAT 59.715 37.037 13.39 0.00 0.00 2.57
240 241 8.499406 ACAAATGCATTAGTCCCTTAACCTATA 58.501 33.333 13.39 0.00 0.00 1.31
241 242 9.349713 CAAATGCATTAGTCCCTTAACCTATAA 57.650 33.333 13.39 0.00 0.00 0.98
242 243 9.574516 AAATGCATTAGTCCCTTAACCTATAAG 57.425 33.333 13.39 0.00 0.00 1.73
243 244 7.685849 TGCATTAGTCCCTTAACCTATAAGT 57.314 36.000 0.00 0.00 0.00 2.24
244 245 7.732996 TGCATTAGTCCCTTAACCTATAAGTC 58.267 38.462 0.00 0.00 0.00 3.01
245 246 7.567622 TGCATTAGTCCCTTAACCTATAAGTCT 59.432 37.037 0.00 0.00 0.00 3.24
246 247 8.430431 GCATTAGTCCCTTAACCTATAAGTCTT 58.570 37.037 0.00 0.00 0.00 3.01
247 248 9.984190 CATTAGTCCCTTAACCTATAAGTCTTC 57.016 37.037 0.00 0.00 0.00 2.87
248 249 9.725206 ATTAGTCCCTTAACCTATAAGTCTTCA 57.275 33.333 0.00 0.00 0.00 3.02
249 250 9.551339 TTAGTCCCTTAACCTATAAGTCTTCAA 57.449 33.333 0.00 0.00 0.00 2.69
250 251 8.625467 AGTCCCTTAACCTATAAGTCTTCAAT 57.375 34.615 0.00 0.00 0.00 2.57
251 252 9.725206 AGTCCCTTAACCTATAAGTCTTCAATA 57.275 33.333 0.00 0.00 0.00 1.90
252 253 9.761504 GTCCCTTAACCTATAAGTCTTCAATAC 57.238 37.037 0.00 0.00 0.00 1.89
253 254 9.496710 TCCCTTAACCTATAAGTCTTCAATACA 57.503 33.333 0.00 0.00 0.00 2.29
254 255 9.543783 CCCTTAACCTATAAGTCTTCAATACAC 57.456 37.037 0.00 0.00 0.00 2.90
255 256 9.543783 CCTTAACCTATAAGTCTTCAATACACC 57.456 37.037 0.00 0.00 0.00 4.16
259 260 9.802039 AACCTATAAGTCTTCAATACACCAAAA 57.198 29.630 0.00 0.00 0.00 2.44
260 261 9.975218 ACCTATAAGTCTTCAATACACCAAAAT 57.025 29.630 0.00 0.00 0.00 1.82
264 265 7.823745 AAGTCTTCAATACACCAAAATCACT 57.176 32.000 0.00 0.00 0.00 3.41
265 266 8.918202 AAGTCTTCAATACACCAAAATCACTA 57.082 30.769 0.00 0.00 0.00 2.74
266 267 8.918202 AGTCTTCAATACACCAAAATCACTAA 57.082 30.769 0.00 0.00 0.00 2.24
267 268 9.003658 AGTCTTCAATACACCAAAATCACTAAG 57.996 33.333 0.00 0.00 0.00 2.18
268 269 8.237267 GTCTTCAATACACCAAAATCACTAAGG 58.763 37.037 0.00 0.00 0.00 2.69
269 270 7.393234 TCTTCAATACACCAAAATCACTAAGGG 59.607 37.037 0.00 0.00 0.00 3.95
270 271 5.949354 TCAATACACCAAAATCACTAAGGGG 59.051 40.000 0.00 0.00 0.00 4.79
271 272 2.525368 ACACCAAAATCACTAAGGGGC 58.475 47.619 0.00 0.00 0.00 5.80
272 273 2.158385 ACACCAAAATCACTAAGGGGCA 60.158 45.455 0.00 0.00 0.00 5.36
273 274 2.231235 CACCAAAATCACTAAGGGGCAC 59.769 50.000 0.00 0.00 0.00 5.01
274 275 2.110011 ACCAAAATCACTAAGGGGCACT 59.890 45.455 0.00 0.00 0.00 4.40
275 276 3.332485 ACCAAAATCACTAAGGGGCACTA 59.668 43.478 0.00 0.00 0.00 2.74
276 277 3.947834 CCAAAATCACTAAGGGGCACTAG 59.052 47.826 0.00 0.00 0.00 2.57
277 278 4.324254 CCAAAATCACTAAGGGGCACTAGA 60.324 45.833 0.00 0.00 0.00 2.43
278 279 5.440610 CAAAATCACTAAGGGGCACTAGAT 58.559 41.667 0.00 0.00 0.00 1.98
279 280 4.696479 AATCACTAAGGGGCACTAGATG 57.304 45.455 0.00 0.00 0.00 2.90
338 339 1.140134 CCTTCTTCCCCTTCCCCACA 61.140 60.000 0.00 0.00 0.00 4.17
339 340 0.777446 CTTCTTCCCCTTCCCCACAA 59.223 55.000 0.00 0.00 0.00 3.33
367 368 1.842562 ACCTACTCGCTCCTACCTACA 59.157 52.381 0.00 0.00 0.00 2.74
370 371 0.624785 ACTCGCTCCTACCTACACCT 59.375 55.000 0.00 0.00 0.00 4.00
445 446 0.098728 CCGTTTGCGCTTCCCTATTG 59.901 55.000 9.73 0.00 36.67 1.90
455 456 4.446371 CGCTTCCCTATTGTCTTGATCTT 58.554 43.478 0.00 0.00 0.00 2.40
457 458 5.189180 GCTTCCCTATTGTCTTGATCTTGT 58.811 41.667 0.00 0.00 0.00 3.16
468 469 5.710099 TGTCTTGATCTTGTTGGTAAATCCC 59.290 40.000 0.00 0.00 34.77 3.85
482 483 3.561120 ATCCCGCGGAAGGTTGCAA 62.561 57.895 30.73 0.00 34.34 4.08
493 494 2.548295 GGTTGCAAAACGCCCTCGA 61.548 57.895 0.00 0.00 41.33 4.04
501 502 1.892209 AAACGCCCTCGAGTTTGATT 58.108 45.000 12.31 0.00 40.05 2.57
651 652 0.968405 GAGGCCCTCAAATTTGTGCA 59.032 50.000 17.47 0.00 0.00 4.57
874 875 2.149383 AGAGGTGTTGCTGCCCTCA 61.149 57.895 20.11 5.23 45.92 3.86
920 921 2.459202 CTTACAAGTTCCCCGGCCGT 62.459 60.000 26.12 4.09 0.00 5.68
948 949 1.949799 ACTGGATCCTCAGCTCAACT 58.050 50.000 14.23 0.00 38.26 3.16
976 977 0.531532 GATGCATGGAGGGTCAGACG 60.532 60.000 2.46 0.00 0.00 4.18
1158 1175 7.415541 GCACATTGGTATCTCACATACAAACAT 60.416 37.037 0.00 0.00 0.00 2.71
1205 1222 3.369147 CAGTTCAAAGAGGCTGTCATACG 59.631 47.826 0.00 0.00 0.00 3.06
1249 1266 2.565841 GGGATAAGATGAAAGCGCTGT 58.434 47.619 12.58 4.49 0.00 4.40
1338 1355 1.070758 CGGCTGTATGACCCTGCTATT 59.929 52.381 0.00 0.00 0.00 1.73
1344 1361 5.777802 CTGTATGACCCTGCTATTAGTGAG 58.222 45.833 0.00 0.00 0.00 3.51
1366 1383 1.602377 CCTTCTTGGTCACACGGTTTC 59.398 52.381 0.00 0.00 0.00 2.78
1517 1534 5.690865 TCCAAAATCCAGTGTCACTAAACT 58.309 37.500 4.85 0.00 0.00 2.66
1533 1550 0.768221 AACTTGACAGCAGAGGGGGA 60.768 55.000 0.00 0.00 0.00 4.81
1536 1553 1.483595 TTGACAGCAGAGGGGGACAG 61.484 60.000 0.00 0.00 0.00 3.51
1579 1596 3.381949 GCACGACAACTGAAAGAGTACT 58.618 45.455 0.00 0.00 37.43 2.73
1648 1665 2.294074 GTCACAGTTGTGCTAAACCCA 58.706 47.619 7.38 0.00 45.25 4.51
1649 1666 2.884639 GTCACAGTTGTGCTAAACCCAT 59.115 45.455 7.38 0.00 45.25 4.00
1683 1700 1.496060 ATGCCATAGTCGGGACTGAA 58.504 50.000 11.47 0.00 42.52 3.02
1752 1769 2.676463 GCAGGAAGCAGTCGAAGAAGAT 60.676 50.000 0.00 0.00 44.79 2.40
1755 1772 3.513515 AGGAAGCAGTCGAAGAAGATCTT 59.486 43.478 7.95 7.95 39.69 2.40
1765 1782 9.393249 CAGTCGAAGAAGATCTTATGTTATCTC 57.607 37.037 8.25 0.00 39.69 2.75
1793 1810 1.039068 CTCTCCGGTGCAGATCATCT 58.961 55.000 0.00 0.00 0.00 2.90
1794 1811 0.749049 TCTCCGGTGCAGATCATCTG 59.251 55.000 10.64 10.64 46.90 2.90
1854 1871 7.251321 AGTTGTGATTATTCTCCTTGACTCT 57.749 36.000 0.00 0.00 0.00 3.24
1863 1880 0.888619 TCCTTGACTCTGGCAGTACG 59.111 55.000 15.27 7.00 34.41 3.67
1984 2001 4.729868 ACCTTGTAAAGCTGAACTTCCAT 58.270 39.130 0.00 0.00 44.44 3.41
2145 2163 5.465390 GGTTCAATTTCTTTACAAAGGCACC 59.535 40.000 2.04 0.00 36.67 5.01
2209 2227 7.172190 CAGTGTTACAGAGAATGTCAGTTGATT 59.828 37.037 0.00 0.00 42.70 2.57
2252 2270 4.354987 AGGAAATGATATATGGGCCACTGT 59.645 41.667 9.28 0.00 0.00 3.55
2296 2314 2.467880 CAACTTCAGTAGCCCCTCCTA 58.532 52.381 0.00 0.00 0.00 2.94
2307 2325 4.016962 AGCCCCTCCTAAACCTATACAA 57.983 45.455 0.00 0.00 0.00 2.41
2398 2416 4.603171 ACCATGCAATCCATCTTATCCCTA 59.397 41.667 0.00 0.00 29.71 3.53
2406 2424 6.905067 ATCCATCTTATCCCTAATGCTCAT 57.095 37.500 0.00 0.00 0.00 2.90
2410 2428 6.353689 CCATCTTATCCCTAATGCTCATCCAT 60.354 42.308 0.00 0.00 0.00 3.41
2429 2447 6.024563 TCCATTTAATTCCAGGCCTTATCA 57.975 37.500 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.634163 AGACTTTTGTTTTCGTAGTTTCATTTT 57.366 25.926 0.00 0.00 0.00 1.82
7 8 9.634163 AAGACTTTTGTTTTCGTAGTTTCATTT 57.366 25.926 0.00 0.00 0.00 2.32
8 9 9.285770 GAAGACTTTTGTTTTCGTAGTTTCATT 57.714 29.630 0.00 0.00 34.56 2.57
9 10 8.674607 AGAAGACTTTTGTTTTCGTAGTTTCAT 58.325 29.630 0.00 0.00 45.03 2.57
10 11 8.036273 AGAAGACTTTTGTTTTCGTAGTTTCA 57.964 30.769 0.00 0.00 45.03 2.69
11 12 7.370059 CGAGAAGACTTTTGTTTTCGTAGTTTC 59.630 37.037 0.00 0.00 45.03 2.78
12 13 7.178074 CGAGAAGACTTTTGTTTTCGTAGTTT 58.822 34.615 0.00 0.00 45.03 2.66
13 14 6.702897 CGAGAAGACTTTTGTTTTCGTAGTT 58.297 36.000 0.00 0.00 45.03 2.24
14 15 5.276726 GCGAGAAGACTTTTGTTTTCGTAGT 60.277 40.000 0.00 0.00 45.03 2.73
15 16 5.050972 AGCGAGAAGACTTTTGTTTTCGTAG 60.051 40.000 0.00 0.00 45.03 3.51
16 17 4.807304 AGCGAGAAGACTTTTGTTTTCGTA 59.193 37.500 0.00 0.00 45.03 3.43
17 18 3.621715 AGCGAGAAGACTTTTGTTTTCGT 59.378 39.130 0.00 0.00 45.03 3.85
18 19 4.197107 AGCGAGAAGACTTTTGTTTTCG 57.803 40.909 0.00 0.00 45.03 3.46
19 20 5.569413 TGAAGCGAGAAGACTTTTGTTTTC 58.431 37.500 0.00 0.00 42.00 2.29
20 21 5.560966 TGAAGCGAGAAGACTTTTGTTTT 57.439 34.783 0.00 0.00 0.00 2.43
21 22 5.066505 ACATGAAGCGAGAAGACTTTTGTTT 59.933 36.000 0.00 0.00 0.00 2.83
22 23 4.576463 ACATGAAGCGAGAAGACTTTTGTT 59.424 37.500 0.00 0.00 0.00 2.83
23 24 4.130118 ACATGAAGCGAGAAGACTTTTGT 58.870 39.130 0.00 0.00 0.00 2.83
24 25 4.739046 ACATGAAGCGAGAAGACTTTTG 57.261 40.909 0.00 0.00 0.00 2.44
25 26 4.214332 GGAACATGAAGCGAGAAGACTTTT 59.786 41.667 0.00 0.00 0.00 2.27
26 27 3.748568 GGAACATGAAGCGAGAAGACTTT 59.251 43.478 0.00 0.00 0.00 2.66
27 28 3.007398 AGGAACATGAAGCGAGAAGACTT 59.993 43.478 0.00 0.00 0.00 3.01
28 29 2.564947 AGGAACATGAAGCGAGAAGACT 59.435 45.455 0.00 0.00 0.00 3.24
29 30 2.966050 AGGAACATGAAGCGAGAAGAC 58.034 47.619 0.00 0.00 0.00 3.01
30 31 3.006859 TCAAGGAACATGAAGCGAGAAGA 59.993 43.478 0.00 0.00 31.17 2.87
31 32 3.329386 TCAAGGAACATGAAGCGAGAAG 58.671 45.455 0.00 0.00 31.17 2.85
32 33 3.401033 TCAAGGAACATGAAGCGAGAA 57.599 42.857 0.00 0.00 31.17 2.87
33 34 3.401033 TTCAAGGAACATGAAGCGAGA 57.599 42.857 0.00 0.00 41.30 4.04
34 35 3.748048 TCTTTCAAGGAACATGAAGCGAG 59.252 43.478 0.00 0.00 46.74 5.03
35 36 3.738982 TCTTTCAAGGAACATGAAGCGA 58.261 40.909 0.00 0.00 46.74 4.93
36 37 4.488126 TTCTTTCAAGGAACATGAAGCG 57.512 40.909 0.00 0.00 46.74 4.68
37 38 6.071952 TGGTATTCTTTCAAGGAACATGAAGC 60.072 38.462 0.00 0.00 46.74 3.86
38 39 7.452880 TGGTATTCTTTCAAGGAACATGAAG 57.547 36.000 0.00 0.00 46.74 3.02
39 40 7.505585 ACTTGGTATTCTTTCAAGGAACATGAA 59.494 33.333 0.00 0.00 44.59 2.57
40 41 7.004086 ACTTGGTATTCTTTCAAGGAACATGA 58.996 34.615 0.00 0.00 41.35 3.07
41 42 7.175641 AGACTTGGTATTCTTTCAAGGAACATG 59.824 37.037 0.00 0.00 41.35 3.21
42 43 7.234355 AGACTTGGTATTCTTTCAAGGAACAT 58.766 34.615 0.00 0.00 41.35 2.71
43 44 6.601332 AGACTTGGTATTCTTTCAAGGAACA 58.399 36.000 0.00 0.00 41.35 3.18
44 45 7.228706 TGAAGACTTGGTATTCTTTCAAGGAAC 59.771 37.037 0.00 0.00 41.35 3.62
45 46 7.287061 TGAAGACTTGGTATTCTTTCAAGGAA 58.713 34.615 0.00 0.00 41.35 3.36
46 47 6.837312 TGAAGACTTGGTATTCTTTCAAGGA 58.163 36.000 0.00 0.00 41.35 3.36
47 48 7.308830 CCTTGAAGACTTGGTATTCTTTCAAGG 60.309 40.741 21.56 21.56 42.57 3.61
48 49 7.229506 ACCTTGAAGACTTGGTATTCTTTCAAG 59.770 37.037 14.04 14.04 42.37 3.02
49 50 7.060421 ACCTTGAAGACTTGGTATTCTTTCAA 58.940 34.615 0.00 0.00 35.19 2.69
50 51 6.601332 ACCTTGAAGACTTGGTATTCTTTCA 58.399 36.000 0.00 0.00 35.19 2.69
51 52 6.710744 TGACCTTGAAGACTTGGTATTCTTTC 59.289 38.462 0.00 0.38 35.19 2.62
52 53 6.486993 GTGACCTTGAAGACTTGGTATTCTTT 59.513 38.462 0.00 0.00 35.19 2.52
53 54 5.998363 GTGACCTTGAAGACTTGGTATTCTT 59.002 40.000 0.00 0.00 35.19 2.52
54 55 5.071788 TGTGACCTTGAAGACTTGGTATTCT 59.928 40.000 0.00 0.00 35.19 2.40
55 56 5.179555 GTGTGACCTTGAAGACTTGGTATTC 59.820 44.000 0.00 0.00 34.78 1.75
56 57 5.063880 GTGTGACCTTGAAGACTTGGTATT 58.936 41.667 0.00 0.00 32.30 1.89
57 58 4.505039 GGTGTGACCTTGAAGACTTGGTAT 60.505 45.833 0.00 0.00 34.73 2.73
58 59 3.181458 GGTGTGACCTTGAAGACTTGGTA 60.181 47.826 0.00 0.00 34.73 3.25
59 60 2.421529 GGTGTGACCTTGAAGACTTGGT 60.422 50.000 0.00 0.00 34.73 3.67
60 61 2.222027 GGTGTGACCTTGAAGACTTGG 58.778 52.381 0.00 0.00 34.73 3.61
61 62 2.917933 TGGTGTGACCTTGAAGACTTG 58.082 47.619 0.00 0.00 39.58 3.16
62 63 3.644966 TTGGTGTGACCTTGAAGACTT 57.355 42.857 0.00 0.00 39.58 3.01
63 64 3.864789 ATTGGTGTGACCTTGAAGACT 57.135 42.857 0.00 0.00 39.58 3.24
64 65 4.580580 AGAAATTGGTGTGACCTTGAAGAC 59.419 41.667 0.00 0.00 39.58 3.01
65 66 4.792068 AGAAATTGGTGTGACCTTGAAGA 58.208 39.130 0.00 0.00 39.58 2.87
66 67 5.067674 TGAAGAAATTGGTGTGACCTTGAAG 59.932 40.000 0.00 0.00 39.58 3.02
67 68 4.952957 TGAAGAAATTGGTGTGACCTTGAA 59.047 37.500 0.00 0.00 39.58 2.69
68 69 4.338118 GTGAAGAAATTGGTGTGACCTTGA 59.662 41.667 0.00 0.00 39.58 3.02
69 70 4.339247 AGTGAAGAAATTGGTGTGACCTTG 59.661 41.667 0.00 0.00 39.58 3.61
70 71 4.536765 AGTGAAGAAATTGGTGTGACCTT 58.463 39.130 0.00 0.00 39.58 3.50
71 72 4.170468 AGTGAAGAAATTGGTGTGACCT 57.830 40.909 0.00 0.00 39.58 3.85
72 73 4.918810 AAGTGAAGAAATTGGTGTGACC 57.081 40.909 0.00 0.00 39.22 4.02
73 74 5.890334 TGAAAGTGAAGAAATTGGTGTGAC 58.110 37.500 0.00 0.00 0.00 3.67
74 75 6.522625 TTGAAAGTGAAGAAATTGGTGTGA 57.477 33.333 0.00 0.00 0.00 3.58
75 76 6.813152 ACTTTGAAAGTGAAGAAATTGGTGTG 59.187 34.615 10.18 0.00 41.01 3.82
76 77 6.935167 ACTTTGAAAGTGAAGAAATTGGTGT 58.065 32.000 10.18 0.00 41.01 4.16
77 78 7.260603 AGACTTTGAAAGTGAAGAAATTGGTG 58.739 34.615 16.25 0.00 43.03 4.17
78 79 7.410120 AGACTTTGAAAGTGAAGAAATTGGT 57.590 32.000 16.25 0.00 43.03 3.67
79 80 7.166473 CGAAGACTTTGAAAGTGAAGAAATTGG 59.834 37.037 16.25 0.00 43.03 3.16
80 81 7.166473 CCGAAGACTTTGAAAGTGAAGAAATTG 59.834 37.037 16.25 0.00 43.03 2.32
81 82 7.067008 TCCGAAGACTTTGAAAGTGAAGAAATT 59.933 33.333 16.25 0.00 43.03 1.82
82 83 6.542370 TCCGAAGACTTTGAAAGTGAAGAAAT 59.458 34.615 16.25 0.00 43.03 2.17
83 84 5.878116 TCCGAAGACTTTGAAAGTGAAGAAA 59.122 36.000 16.25 0.00 43.03 2.52
84 85 5.424757 TCCGAAGACTTTGAAAGTGAAGAA 58.575 37.500 16.25 0.00 43.03 2.52
85 86 5.018539 TCCGAAGACTTTGAAAGTGAAGA 57.981 39.130 16.25 2.42 43.03 2.87
86 87 5.734855 TTCCGAAGACTTTGAAAGTGAAG 57.265 39.130 16.25 4.14 43.03 3.02
87 88 6.119144 CTTTCCGAAGACTTTGAAAGTGAA 57.881 37.500 16.25 9.25 43.03 3.18
88 89 5.734855 CTTTCCGAAGACTTTGAAAGTGA 57.265 39.130 16.25 3.11 43.03 3.41
91 92 5.993106 AGACTTTCCGAAGACTTTGAAAG 57.007 39.130 24.92 24.92 45.70 2.62
92 93 5.878116 TGAAGACTTTCCGAAGACTTTGAAA 59.122 36.000 3.82 8.43 44.18 2.69
93 94 5.424757 TGAAGACTTTCCGAAGACTTTGAA 58.575 37.500 3.82 0.94 44.18 2.69
94 95 5.018539 TGAAGACTTTCCGAAGACTTTGA 57.981 39.130 3.82 0.00 44.18 2.69
95 96 5.050490 TCTGAAGACTTTCCGAAGACTTTG 58.950 41.667 5.61 0.00 44.18 2.77
96 97 5.277857 TCTGAAGACTTTCCGAAGACTTT 57.722 39.130 5.61 0.00 44.18 2.66
97 98 4.939052 TCTGAAGACTTTCCGAAGACTT 57.061 40.909 4.11 4.11 45.87 3.01
98 99 4.939052 TTCTGAAGACTTTCCGAAGACT 57.061 40.909 0.00 0.00 39.10 3.24
99 100 5.577554 GGTATTCTGAAGACTTTCCGAAGAC 59.422 44.000 14.11 9.32 42.76 3.01
100 101 5.245301 TGGTATTCTGAAGACTTTCCGAAGA 59.755 40.000 14.11 0.00 39.07 2.87
101 102 5.479306 TGGTATTCTGAAGACTTTCCGAAG 58.521 41.667 14.11 0.00 39.07 3.79
102 103 5.477607 TGGTATTCTGAAGACTTTCCGAA 57.522 39.130 14.11 0.00 39.70 4.30
103 104 5.477607 TTGGTATTCTGAAGACTTTCCGA 57.522 39.130 14.11 0.00 32.09 4.55
104 105 5.701290 ACTTTGGTATTCTGAAGACTTTCCG 59.299 40.000 14.11 3.67 32.09 4.30
105 106 6.937465 AGACTTTGGTATTCTGAAGACTTTCC 59.063 38.462 14.11 0.00 32.09 3.13
106 107 7.971183 AGACTTTGGTATTCTGAAGACTTTC 57.029 36.000 14.11 5.04 0.00 2.62
107 108 9.847224 TTAAGACTTTGGTATTCTGAAGACTTT 57.153 29.630 14.11 2.61 36.25 2.66
108 109 9.495572 CTTAAGACTTTGGTATTCTGAAGACTT 57.504 33.333 14.11 4.64 37.66 3.01
109 110 8.652290 ACTTAAGACTTTGGTATTCTGAAGACT 58.348 33.333 10.09 0.00 33.13 3.24
110 111 8.834749 ACTTAAGACTTTGGTATTCTGAAGAC 57.165 34.615 10.09 6.62 33.13 3.01
111 112 7.813148 CGACTTAAGACTTTGGTATTCTGAAGA 59.187 37.037 10.09 0.00 33.13 2.87
112 113 7.813148 TCGACTTAAGACTTTGGTATTCTGAAG 59.187 37.037 10.09 0.00 34.91 3.02
113 114 7.663827 TCGACTTAAGACTTTGGTATTCTGAA 58.336 34.615 10.09 0.00 0.00 3.02
114 115 7.223260 TCGACTTAAGACTTTGGTATTCTGA 57.777 36.000 10.09 0.00 0.00 3.27
115 116 7.813148 TCTTCGACTTAAGACTTTGGTATTCTG 59.187 37.037 10.09 0.00 30.54 3.02
116 117 7.893658 TCTTCGACTTAAGACTTTGGTATTCT 58.106 34.615 10.09 0.00 30.54 2.40
117 118 8.705048 ATCTTCGACTTAAGACTTTGGTATTC 57.295 34.615 10.09 0.00 38.28 1.75
120 121 9.798994 GAATATCTTCGACTTAAGACTTTGGTA 57.201 33.333 10.09 0.00 38.28 3.25
121 122 8.311836 TGAATATCTTCGACTTAAGACTTTGGT 58.688 33.333 10.09 0.00 38.28 3.67
122 123 8.703604 TGAATATCTTCGACTTAAGACTTTGG 57.296 34.615 10.09 0.00 38.28 3.28
132 133 9.449719 ACCACTAAAAATGAATATCTTCGACTT 57.550 29.630 0.00 0.00 33.86 3.01
133 134 9.099454 GACCACTAAAAATGAATATCTTCGACT 57.901 33.333 0.00 0.00 33.86 4.18
134 135 8.056571 CGACCACTAAAAATGAATATCTTCGAC 58.943 37.037 0.00 0.00 33.86 4.20
135 136 7.977293 TCGACCACTAAAAATGAATATCTTCGA 59.023 33.333 0.00 0.00 33.86 3.71
136 137 8.056571 GTCGACCACTAAAAATGAATATCTTCG 58.943 37.037 3.51 0.00 33.86 3.79
137 138 9.099454 AGTCGACCACTAAAAATGAATATCTTC 57.901 33.333 13.01 0.00 31.37 2.87
138 139 9.449719 AAGTCGACCACTAAAAATGAATATCTT 57.550 29.630 13.01 0.00 32.30 2.40
139 140 9.449719 AAAGTCGACCACTAAAAATGAATATCT 57.550 29.630 13.01 0.00 32.30 1.98
142 143 8.508875 GGAAAAGTCGACCACTAAAAATGAATA 58.491 33.333 13.01 0.00 32.30 1.75
143 144 7.230712 AGGAAAAGTCGACCACTAAAAATGAAT 59.769 33.333 13.01 0.00 32.30 2.57
144 145 6.544564 AGGAAAAGTCGACCACTAAAAATGAA 59.455 34.615 13.01 0.00 32.30 2.57
145 146 6.017440 CAGGAAAAGTCGACCACTAAAAATGA 60.017 38.462 13.01 0.00 32.30 2.57
146 147 6.142817 CAGGAAAAGTCGACCACTAAAAATG 58.857 40.000 13.01 0.00 32.30 2.32
147 148 5.826208 ACAGGAAAAGTCGACCACTAAAAAT 59.174 36.000 13.01 0.00 32.30 1.82
148 149 5.187687 ACAGGAAAAGTCGACCACTAAAAA 58.812 37.500 13.01 0.00 32.30 1.94
149 150 4.773013 ACAGGAAAAGTCGACCACTAAAA 58.227 39.130 13.01 0.00 32.30 1.52
150 151 4.411256 ACAGGAAAAGTCGACCACTAAA 57.589 40.909 13.01 0.00 32.30 1.85
151 152 5.534207 TTACAGGAAAAGTCGACCACTAA 57.466 39.130 13.01 0.00 32.30 2.24
152 153 5.534207 TTTACAGGAAAAGTCGACCACTA 57.466 39.130 13.01 0.00 32.30 2.74
153 154 4.411256 TTTACAGGAAAAGTCGACCACT 57.589 40.909 13.01 0.42 36.64 4.00
154 155 6.592607 TGATATTTACAGGAAAAGTCGACCAC 59.407 38.462 13.01 1.12 0.00 4.16
155 156 6.703319 TGATATTTACAGGAAAAGTCGACCA 58.297 36.000 13.01 0.00 0.00 4.02
156 157 7.605410 TTGATATTTACAGGAAAAGTCGACC 57.395 36.000 13.01 0.00 0.00 4.79
157 158 8.718734 AGTTTGATATTTACAGGAAAAGTCGAC 58.281 33.333 7.70 7.70 0.00 4.20
158 159 8.842358 AGTTTGATATTTACAGGAAAAGTCGA 57.158 30.769 0.00 0.00 0.00 4.20
159 160 8.175716 GGAGTTTGATATTTACAGGAAAAGTCG 58.824 37.037 0.00 0.00 0.00 4.18
160 161 9.232473 AGGAGTTTGATATTTACAGGAAAAGTC 57.768 33.333 0.00 0.00 0.00 3.01
161 162 9.232473 GAGGAGTTTGATATTTACAGGAAAAGT 57.768 33.333 0.00 0.00 0.00 2.66
162 163 9.231297 TGAGGAGTTTGATATTTACAGGAAAAG 57.769 33.333 0.00 0.00 0.00 2.27
163 164 9.753674 ATGAGGAGTTTGATATTTACAGGAAAA 57.246 29.630 0.00 0.00 0.00 2.29
166 167 9.434275 TCTATGAGGAGTTTGATATTTACAGGA 57.566 33.333 0.00 0.00 0.00 3.86
167 168 9.482627 GTCTATGAGGAGTTTGATATTTACAGG 57.517 37.037 0.00 0.00 0.00 4.00
176 177 9.084533 GGTCTATAAGTCTATGAGGAGTTTGAT 57.915 37.037 0.00 0.00 32.06 2.57
177 178 8.282982 AGGTCTATAAGTCTATGAGGAGTTTGA 58.717 37.037 0.00 0.00 32.06 2.69
178 179 8.472007 AGGTCTATAAGTCTATGAGGAGTTTG 57.528 38.462 0.00 0.00 32.06 2.93
180 181 9.747898 CATAGGTCTATAAGTCTATGAGGAGTT 57.252 37.037 0.00 0.00 40.64 3.01
181 182 8.896658 ACATAGGTCTATAAGTCTATGAGGAGT 58.103 37.037 13.87 0.00 40.64 3.85
184 185 9.961264 TGTACATAGGTCTATAAGTCTATGAGG 57.039 37.037 13.87 0.00 40.64 3.86
189 190 9.775854 GTGAGTGTACATAGGTCTATAAGTCTA 57.224 37.037 0.00 0.00 0.00 2.59
190 191 8.272889 TGTGAGTGTACATAGGTCTATAAGTCT 58.727 37.037 0.00 0.00 0.00 3.24
191 192 8.447924 TGTGAGTGTACATAGGTCTATAAGTC 57.552 38.462 0.00 0.00 0.00 3.01
192 193 8.818622 TTGTGAGTGTACATAGGTCTATAAGT 57.181 34.615 0.00 0.00 0.00 2.24
195 196 8.141909 GCATTTGTGAGTGTACATAGGTCTATA 58.858 37.037 0.00 0.00 0.00 1.31
196 197 6.986817 GCATTTGTGAGTGTACATAGGTCTAT 59.013 38.462 0.00 0.00 0.00 1.98
197 198 6.071051 TGCATTTGTGAGTGTACATAGGTCTA 60.071 38.462 0.00 0.00 0.00 2.59
198 199 5.178797 GCATTTGTGAGTGTACATAGGTCT 58.821 41.667 0.00 0.00 0.00 3.85
199 200 4.935205 TGCATTTGTGAGTGTACATAGGTC 59.065 41.667 0.00 0.00 0.00 3.85
200 201 4.905429 TGCATTTGTGAGTGTACATAGGT 58.095 39.130 0.00 0.00 0.00 3.08
201 202 6.441093 AATGCATTTGTGAGTGTACATAGG 57.559 37.500 5.99 0.00 0.00 2.57
202 203 8.201554 ACTAATGCATTTGTGAGTGTACATAG 57.798 34.615 22.90 9.58 0.00 2.23
203 204 7.279981 GGACTAATGCATTTGTGAGTGTACATA 59.720 37.037 27.37 0.26 0.00 2.29
204 205 6.094048 GGACTAATGCATTTGTGAGTGTACAT 59.906 38.462 27.37 2.56 0.00 2.29
205 206 5.411361 GGACTAATGCATTTGTGAGTGTACA 59.589 40.000 27.37 0.00 0.00 2.90
206 207 5.163754 GGGACTAATGCATTTGTGAGTGTAC 60.164 44.000 27.37 12.98 0.00 2.90
207 208 4.941263 GGGACTAATGCATTTGTGAGTGTA 59.059 41.667 27.37 2.12 0.00 2.90
208 209 3.758554 GGGACTAATGCATTTGTGAGTGT 59.241 43.478 27.37 11.16 0.00 3.55
209 210 4.012374 AGGGACTAATGCATTTGTGAGTG 58.988 43.478 27.37 8.51 36.02 3.51
210 211 4.307032 AGGGACTAATGCATTTGTGAGT 57.693 40.909 27.37 19.50 36.02 3.41
211 212 6.404734 GGTTAAGGGACTAATGCATTTGTGAG 60.405 42.308 27.37 16.60 38.49 3.51
212 213 5.417580 GGTTAAGGGACTAATGCATTTGTGA 59.582 40.000 27.37 5.39 38.49 3.58
213 214 5.418840 AGGTTAAGGGACTAATGCATTTGTG 59.581 40.000 27.37 15.82 38.49 3.33
214 215 5.580022 AGGTTAAGGGACTAATGCATTTGT 58.420 37.500 23.57 23.57 38.49 2.83
215 216 7.823745 ATAGGTTAAGGGACTAATGCATTTG 57.176 36.000 18.75 18.13 38.49 2.32
216 217 9.574516 CTTATAGGTTAAGGGACTAATGCATTT 57.425 33.333 18.75 0.00 38.49 2.32
217 218 8.724310 ACTTATAGGTTAAGGGACTAATGCATT 58.276 33.333 17.56 17.56 38.49 3.56
218 219 8.276453 ACTTATAGGTTAAGGGACTAATGCAT 57.724 34.615 0.00 0.00 38.49 3.96
219 220 7.567622 AGACTTATAGGTTAAGGGACTAATGCA 59.432 37.037 0.00 0.00 38.49 3.96
220 221 7.964624 AGACTTATAGGTTAAGGGACTAATGC 58.035 38.462 0.00 0.00 38.49 3.56
221 222 9.984190 GAAGACTTATAGGTTAAGGGACTAATG 57.016 37.037 0.00 0.00 38.49 1.90
222 223 9.725206 TGAAGACTTATAGGTTAAGGGACTAAT 57.275 33.333 0.00 0.00 38.49 1.73
223 224 9.551339 TTGAAGACTTATAGGTTAAGGGACTAA 57.449 33.333 0.00 0.00 38.49 2.24
224 225 9.725206 ATTGAAGACTTATAGGTTAAGGGACTA 57.275 33.333 0.00 0.00 38.49 2.59
226 227 9.761504 GTATTGAAGACTTATAGGTTAAGGGAC 57.238 37.037 0.00 0.00 0.00 4.46
227 228 9.496710 TGTATTGAAGACTTATAGGTTAAGGGA 57.503 33.333 0.00 0.00 0.00 4.20
228 229 9.543783 GTGTATTGAAGACTTATAGGTTAAGGG 57.456 37.037 0.00 0.00 0.00 3.95
229 230 9.543783 GGTGTATTGAAGACTTATAGGTTAAGG 57.456 37.037 0.00 0.00 0.00 2.69
233 234 9.802039 TTTTGGTGTATTGAAGACTTATAGGTT 57.198 29.630 0.00 0.00 0.00 3.50
234 235 9.975218 ATTTTGGTGTATTGAAGACTTATAGGT 57.025 29.630 0.00 0.00 0.00 3.08
238 239 9.520515 AGTGATTTTGGTGTATTGAAGACTTAT 57.479 29.630 0.00 0.00 0.00 1.73
239 240 8.918202 AGTGATTTTGGTGTATTGAAGACTTA 57.082 30.769 0.00 0.00 0.00 2.24
240 241 7.823745 AGTGATTTTGGTGTATTGAAGACTT 57.176 32.000 0.00 0.00 0.00 3.01
241 242 8.918202 TTAGTGATTTTGGTGTATTGAAGACT 57.082 30.769 0.00 0.00 0.00 3.24
242 243 8.237267 CCTTAGTGATTTTGGTGTATTGAAGAC 58.763 37.037 0.00 0.00 0.00 3.01
243 244 7.393234 CCCTTAGTGATTTTGGTGTATTGAAGA 59.607 37.037 0.00 0.00 0.00 2.87
244 245 7.362920 CCCCTTAGTGATTTTGGTGTATTGAAG 60.363 40.741 0.00 0.00 0.00 3.02
245 246 6.435904 CCCCTTAGTGATTTTGGTGTATTGAA 59.564 38.462 0.00 0.00 0.00 2.69
246 247 5.949354 CCCCTTAGTGATTTTGGTGTATTGA 59.051 40.000 0.00 0.00 0.00 2.57
247 248 5.394115 GCCCCTTAGTGATTTTGGTGTATTG 60.394 44.000 0.00 0.00 0.00 1.90
248 249 4.709886 GCCCCTTAGTGATTTTGGTGTATT 59.290 41.667 0.00 0.00 0.00 1.89
249 250 4.264172 TGCCCCTTAGTGATTTTGGTGTAT 60.264 41.667 0.00 0.00 0.00 2.29
250 251 3.074687 TGCCCCTTAGTGATTTTGGTGTA 59.925 43.478 0.00 0.00 0.00 2.90
251 252 2.158385 TGCCCCTTAGTGATTTTGGTGT 60.158 45.455 0.00 0.00 0.00 4.16
252 253 2.231235 GTGCCCCTTAGTGATTTTGGTG 59.769 50.000 0.00 0.00 0.00 4.17
253 254 2.110011 AGTGCCCCTTAGTGATTTTGGT 59.890 45.455 0.00 0.00 0.00 3.67
254 255 2.807676 AGTGCCCCTTAGTGATTTTGG 58.192 47.619 0.00 0.00 0.00 3.28
255 256 4.843728 TCTAGTGCCCCTTAGTGATTTTG 58.156 43.478 0.00 0.00 0.00 2.44
256 257 5.440610 CATCTAGTGCCCCTTAGTGATTTT 58.559 41.667 0.00 0.00 0.00 1.82
257 258 5.041191 CATCTAGTGCCCCTTAGTGATTT 57.959 43.478 0.00 0.00 0.00 2.17
258 259 4.696479 CATCTAGTGCCCCTTAGTGATT 57.304 45.455 0.00 0.00 0.00 2.57
271 272 5.065704 AGTGAGTGTAAGTGCATCTAGTG 57.934 43.478 0.00 0.00 0.00 2.74
272 273 5.730296 AAGTGAGTGTAAGTGCATCTAGT 57.270 39.130 0.00 0.00 0.00 2.57
273 274 6.393990 AGAAAGTGAGTGTAAGTGCATCTAG 58.606 40.000 0.00 0.00 0.00 2.43
274 275 6.209589 AGAGAAAGTGAGTGTAAGTGCATCTA 59.790 38.462 0.00 0.00 0.00 1.98
275 276 5.011533 AGAGAAAGTGAGTGTAAGTGCATCT 59.988 40.000 0.00 0.00 0.00 2.90
276 277 5.233988 AGAGAAAGTGAGTGTAAGTGCATC 58.766 41.667 0.00 0.00 0.00 3.91
277 278 5.220710 AGAGAAAGTGAGTGTAAGTGCAT 57.779 39.130 0.00 0.00 0.00 3.96
278 279 4.672587 AGAGAAAGTGAGTGTAAGTGCA 57.327 40.909 0.00 0.00 0.00 4.57
279 280 4.449405 GGAAGAGAAAGTGAGTGTAAGTGC 59.551 45.833 0.00 0.00 0.00 4.40
280 281 4.681942 CGGAAGAGAAAGTGAGTGTAAGTG 59.318 45.833 0.00 0.00 0.00 3.16
281 282 4.341520 ACGGAAGAGAAAGTGAGTGTAAGT 59.658 41.667 0.00 0.00 0.00 2.24
282 283 4.872664 ACGGAAGAGAAAGTGAGTGTAAG 58.127 43.478 0.00 0.00 0.00 2.34
283 284 4.261909 GGACGGAAGAGAAAGTGAGTGTAA 60.262 45.833 0.00 0.00 0.00 2.41
284 285 3.255149 GGACGGAAGAGAAAGTGAGTGTA 59.745 47.826 0.00 0.00 0.00 2.90
285 286 2.036089 GGACGGAAGAGAAAGTGAGTGT 59.964 50.000 0.00 0.00 0.00 3.55
286 287 2.610727 GGGACGGAAGAGAAAGTGAGTG 60.611 54.545 0.00 0.00 0.00 3.51
287 288 1.619332 GGGACGGAAGAGAAAGTGAGT 59.381 52.381 0.00 0.00 0.00 3.41
338 339 2.289506 GGAGCGAGTAGGTGAGGTTTTT 60.290 50.000 0.00 0.00 0.00 1.94
339 340 1.275573 GGAGCGAGTAGGTGAGGTTTT 59.724 52.381 0.00 0.00 0.00 2.43
367 368 0.251832 ATCTCCCGATCGCCATAGGT 60.252 55.000 10.32 0.00 0.00 3.08
370 371 2.579878 GGATCTCCCGATCGCCATA 58.420 57.895 10.32 0.00 45.66 2.74
445 446 5.163754 CGGGATTTACCAACAAGATCAAGAC 60.164 44.000 0.00 0.00 41.20 3.01
455 456 0.036448 TTCCGCGGGATTTACCAACA 59.964 50.000 27.83 0.00 41.20 3.33
457 458 0.393267 CCTTCCGCGGGATTTACCAA 60.393 55.000 27.83 8.51 41.20 3.67
468 469 2.008697 CGTTTTGCAACCTTCCGCG 61.009 57.895 0.00 0.00 0.00 6.46
482 483 1.892209 AATCAAACTCGAGGGCGTTT 58.108 45.000 18.41 6.02 38.98 3.60
501 502 4.447138 ACCCACTTCTGGATTTACACAA 57.553 40.909 0.00 0.00 40.55 3.33
651 652 4.089361 GTCAATCCCCTCAATTTTGTCCT 58.911 43.478 0.00 0.00 0.00 3.85
920 921 2.361104 GGATCCAGTTTGCGGCCA 60.361 61.111 6.95 0.00 0.00 5.36
948 949 0.769247 CTCCATGCATCCTGGATCCA 59.231 55.000 15.27 15.27 41.83 3.41
962 963 2.982130 GTGCGTCTGACCCTCCAT 59.018 61.111 1.55 0.00 0.00 3.41
976 977 3.896133 CATCCATGGCCTGCGTGC 61.896 66.667 6.96 0.00 0.00 5.34
1158 1175 0.552367 ATTCCACCCATCCCACCTCA 60.552 55.000 0.00 0.00 0.00 3.86
1249 1266 4.402155 AGTGCTTTCCTGTTTCAACATCAA 59.598 37.500 0.00 0.00 38.41 2.57
1306 1323 1.032794 TACAGCCGCACCTGATAGAG 58.967 55.000 7.53 0.00 36.67 2.43
1390 1407 1.133181 TGAATCTCCACTGCCCCACA 61.133 55.000 0.00 0.00 0.00 4.17
1439 1456 2.493278 CCCTCTTGAACGGATGCAAATT 59.507 45.455 0.00 0.00 0.00 1.82
1470 1487 4.988598 CGTGGTGCCCGAGCTTGT 62.989 66.667 0.00 0.00 40.80 3.16
1472 1489 1.895020 TTATCGTGGTGCCCGAGCTT 61.895 55.000 0.00 0.00 40.80 3.74
1489 1506 8.698973 TTAGTGACACTGGATTTTGGAAATTA 57.301 30.769 18.58 0.00 0.00 1.40
1517 1534 1.461268 TGTCCCCCTCTGCTGTCAA 60.461 57.895 0.00 0.00 0.00 3.18
1579 1596 0.323302 TAGAGACCATTTGCACGGCA 59.677 50.000 0.00 0.00 36.47 5.69
1648 1665 1.514087 CATTTGCTTGAGCCGCCAT 59.486 52.632 0.00 0.00 41.18 4.40
1649 1666 2.964174 CATTTGCTTGAGCCGCCA 59.036 55.556 0.00 0.00 41.18 5.69
1683 1700 2.501723 AGGTATTCGGTCAGCATCAGTT 59.498 45.455 0.00 0.00 0.00 3.16
1752 1769 8.476064 AGAGAGCATTGAGAGATAACATAAGA 57.524 34.615 0.00 0.00 0.00 2.10
1755 1772 6.072230 CGGAGAGAGCATTGAGAGATAACATA 60.072 42.308 0.00 0.00 0.00 2.29
1765 1782 0.809241 GCACCGGAGAGAGCATTGAG 60.809 60.000 9.46 0.00 0.00 3.02
1793 1810 5.687770 TGCTCTCAATCGAATTGTTTTCA 57.312 34.783 0.00 0.00 41.02 2.69
1794 1811 6.034256 CCATTGCTCTCAATCGAATTGTTTTC 59.966 38.462 0.00 0.00 40.74 2.29
1854 1871 2.753055 TGAAACTATGCGTACTGCCA 57.247 45.000 7.13 0.00 45.60 4.92
1863 1880 7.174599 AGGATAGCTTCATCAATGAAACTATGC 59.825 37.037 24.98 24.98 45.26 3.14
1942 1959 3.457012 GGTAACACCTCCCCATTAGCTAA 59.543 47.826 8.99 8.99 34.73 3.09
1984 2001 3.517901 CCCTGTATCCACCAAGTGAGTTA 59.482 47.826 0.00 0.00 35.23 2.24
2145 2163 5.708948 TGAATGCCCTTCAGTTTTATTTCG 58.291 37.500 0.00 0.00 38.97 3.46
2209 2227 5.947663 TCCTTTCTCCCATTTCAACACTTA 58.052 37.500 0.00 0.00 0.00 2.24
2252 2270 4.662278 ACTTTCCTTAGGCATAAGCACAA 58.338 39.130 12.62 2.47 44.61 3.33
2296 2314 7.620880 TCAGTAATGAGCTGTTGTATAGGTTT 58.379 34.615 0.00 0.00 35.60 3.27
2307 2325 6.098838 TGTCCTGATATTCAGTAATGAGCTGT 59.901 38.462 0.00 0.00 42.80 4.40
2398 2416 5.221581 GCCTGGAATTAAATGGATGAGCATT 60.222 40.000 0.00 0.00 0.00 3.56
2406 2424 6.024563 TGATAAGGCCTGGAATTAAATGGA 57.975 37.500 5.69 0.00 0.00 3.41
2410 2428 8.278639 TGAGTATTGATAAGGCCTGGAATTAAA 58.721 33.333 5.69 0.60 0.00 1.52
2429 2447 7.836685 TCTCATCTTTCTGTAGAGGTGAGTATT 59.163 37.037 11.97 0.00 34.84 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.