Multiple sequence alignment - TraesCS6A01G108100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G108100 chr6A 100.000 2778 0 0 1 2778 76975224 76978001 0.000000e+00 5131
1 TraesCS6A01G108100 chr6A 97.906 573 12 0 1 573 76966906 76967478 0.000000e+00 992
2 TraesCS6A01G108100 chr6A 99.729 369 1 0 2410 2778 76989798 76990166 0.000000e+00 676
3 TraesCS6A01G108100 chr6D 94.251 1409 52 15 780 2181 60383276 60384662 0.000000e+00 2126
4 TraesCS6A01G108100 chr6D 93.388 121 8 0 2273 2393 60384914 60385034 2.200000e-41 180
5 TraesCS6A01G108100 chr6D 83.505 194 20 1 1941 2122 60500986 60500793 1.320000e-38 171
6 TraesCS6A01G108100 chr6B 89.952 1463 87 26 763 2210 134467721 134469138 0.000000e+00 1832
7 TraesCS6A01G108100 chr4A 97.906 573 12 0 1 573 583013741 583013169 0.000000e+00 992
8 TraesCS6A01G108100 chr4A 97.906 573 12 0 1 573 586632503 586631931 0.000000e+00 992
9 TraesCS6A01G108100 chr3A 97.731 573 13 0 1 573 644735121 644734549 0.000000e+00 987
10 TraesCS6A01G108100 chr3A 97.557 573 14 0 1 573 199815952 199815380 0.000000e+00 981
11 TraesCS6A01G108100 chr3A 97.557 573 14 0 1 573 399858431 399859003 0.000000e+00 981
12 TraesCS6A01G108100 chr3A 99.458 369 2 0 2410 2778 434768993 434769361 0.000000e+00 671
13 TraesCS6A01G108100 chr3A 99.458 369 2 0 2410 2778 434782555 434782923 0.000000e+00 671
14 TraesCS6A01G108100 chr2A 97.731 573 13 0 1 573 81053558 81054130 0.000000e+00 987
15 TraesCS6A01G108100 chr2A 85.417 192 23 5 575 762 184555355 184555165 7.850000e-46 195
16 TraesCS6A01G108100 chr1A 97.557 573 14 0 1 573 537723145 537723717 0.000000e+00 981
17 TraesCS6A01G108100 chr7A 97.227 577 16 0 1 577 545794809 545794233 0.000000e+00 977
18 TraesCS6A01G108100 chrUn 98.378 370 6 0 2409 2778 252537273 252536904 0.000000e+00 651
19 TraesCS6A01G108100 chr5A 98.378 370 6 0 2409 2778 97191087 97190718 0.000000e+00 651
20 TraesCS6A01G108100 chr7B 98.123 373 6 1 2407 2778 642857381 642857009 0.000000e+00 649
21 TraesCS6A01G108100 chr7B 97.867 375 7 1 2404 2778 435190126 435190499 0.000000e+00 647
22 TraesCS6A01G108100 chr5B 98.374 369 6 0 2410 2778 271556561 271556193 0.000000e+00 649
23 TraesCS6A01G108100 chr5B 84.038 213 28 6 569 777 514300538 514300328 1.690000e-47 200
24 TraesCS6A01G108100 chr5B 84.314 204 24 7 569 768 685621091 685620892 2.820000e-45 193
25 TraesCS6A01G108100 chr5B 83.417 199 28 5 569 765 53442685 53442880 2.200000e-41 180
26 TraesCS6A01G108100 chr4B 98.374 369 6 0 2410 2778 127703795 127703427 0.000000e+00 649
27 TraesCS6A01G108100 chr4B 86.139 202 26 2 569 769 22857556 22857356 1.680000e-52 217
28 TraesCS6A01G108100 chr1B 86.413 184 24 1 586 768 308118208 308118025 1.690000e-47 200
29 TraesCS6A01G108100 chr4D 87.647 170 18 3 601 768 477410459 477410291 7.850000e-46 195
30 TraesCS6A01G108100 chr2B 84.293 191 23 5 569 757 438735145 438735330 2.200000e-41 180
31 TraesCS6A01G108100 chr1D 83.249 197 29 4 575 769 485491595 485491789 7.910000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G108100 chr6A 76975224 76978001 2777 False 5131 5131 100.0000 1 2778 1 chr6A.!!$F2 2777
1 TraesCS6A01G108100 chr6A 76966906 76967478 572 False 992 992 97.9060 1 573 1 chr6A.!!$F1 572
2 TraesCS6A01G108100 chr6D 60383276 60385034 1758 False 1153 2126 93.8195 780 2393 2 chr6D.!!$F1 1613
3 TraesCS6A01G108100 chr6B 134467721 134469138 1417 False 1832 1832 89.9520 763 2210 1 chr6B.!!$F1 1447
4 TraesCS6A01G108100 chr4A 583013169 583013741 572 True 992 992 97.9060 1 573 1 chr4A.!!$R1 572
5 TraesCS6A01G108100 chr4A 586631931 586632503 572 True 992 992 97.9060 1 573 1 chr4A.!!$R2 572
6 TraesCS6A01G108100 chr3A 644734549 644735121 572 True 987 987 97.7310 1 573 1 chr3A.!!$R2 572
7 TraesCS6A01G108100 chr3A 199815380 199815952 572 True 981 981 97.5570 1 573 1 chr3A.!!$R1 572
8 TraesCS6A01G108100 chr3A 399858431 399859003 572 False 981 981 97.5570 1 573 1 chr3A.!!$F1 572
9 TraesCS6A01G108100 chr2A 81053558 81054130 572 False 987 987 97.7310 1 573 1 chr2A.!!$F1 572
10 TraesCS6A01G108100 chr1A 537723145 537723717 572 False 981 981 97.5570 1 573 1 chr1A.!!$F1 572
11 TraesCS6A01G108100 chr7A 545794233 545794809 576 True 977 977 97.2270 1 577 1 chr7A.!!$R1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 931 0.10104 CTTGAGGCTCTCAGCTCTCG 59.899 60.0 16.72 0.0 41.75 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1787 1828 0.027979 CGTGCATGGTAAAGATGCCG 59.972 55.0 0.0 0.0 44.76 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 6.127196 GGTTGTATGAGATCTTCCTCTTGACT 60.127 42.308 0.00 0.00 34.38 3.41
80 81 4.014406 GGAAACATACCTAACCCCACAAG 58.986 47.826 0.00 0.00 0.00 3.16
117 118 3.181438 ACCATGGGTTAGTACACAAAGCA 60.181 43.478 18.09 0.00 41.97 3.91
144 145 4.207165 GGACAATGCTTACCATACCATGT 58.793 43.478 0.00 0.00 32.67 3.21
301 302 7.612668 ATGATCACACAATCTTCTTCTTCAG 57.387 36.000 0.00 0.00 0.00 3.02
345 346 4.717877 ACTCACACATGACCAATCTTTGA 58.282 39.130 0.00 0.00 0.00 2.69
485 486 6.720309 TCAAGACAATCCTATGGACAAATCA 58.280 36.000 0.00 0.00 32.98 2.57
553 554 6.471233 TCAATTACCAAAACCACACATGAA 57.529 33.333 0.00 0.00 0.00 2.57
573 574 1.210155 GCACCGCATGTCCTTTCAC 59.790 57.895 0.00 0.00 0.00 3.18
577 578 0.523072 CCGCATGTCCTTTCACCAAG 59.477 55.000 0.00 0.00 0.00 3.61
578 579 1.238439 CGCATGTCCTTTCACCAAGT 58.762 50.000 0.00 0.00 0.00 3.16
579 580 1.608590 CGCATGTCCTTTCACCAAGTT 59.391 47.619 0.00 0.00 0.00 2.66
580 581 2.034558 CGCATGTCCTTTCACCAAGTTT 59.965 45.455 0.00 0.00 0.00 2.66
581 582 3.252215 CGCATGTCCTTTCACCAAGTTTA 59.748 43.478 0.00 0.00 0.00 2.01
582 583 4.261405 CGCATGTCCTTTCACCAAGTTTAA 60.261 41.667 0.00 0.00 0.00 1.52
583 584 5.564651 CGCATGTCCTTTCACCAAGTTTAAT 60.565 40.000 0.00 0.00 0.00 1.40
584 585 5.863935 GCATGTCCTTTCACCAAGTTTAATC 59.136 40.000 0.00 0.00 0.00 1.75
585 586 6.516527 GCATGTCCTTTCACCAAGTTTAATCA 60.517 38.462 0.00 0.00 0.00 2.57
586 587 7.605449 CATGTCCTTTCACCAAGTTTAATCAT 58.395 34.615 0.00 0.00 0.00 2.45
587 588 8.739039 CATGTCCTTTCACCAAGTTTAATCATA 58.261 33.333 0.00 0.00 0.00 2.15
588 589 8.698973 TGTCCTTTCACCAAGTTTAATCATAA 57.301 30.769 0.00 0.00 0.00 1.90
589 590 9.137459 TGTCCTTTCACCAAGTTTAATCATAAA 57.863 29.630 0.00 0.00 0.00 1.40
590 591 9.974980 GTCCTTTCACCAAGTTTAATCATAAAA 57.025 29.630 0.00 0.00 32.98 1.52
628 629 7.311092 ACCATAACAAATCTATACGATGGGA 57.689 36.000 0.00 0.00 37.50 4.37
629 630 7.741785 ACCATAACAAATCTATACGATGGGAA 58.258 34.615 0.00 0.00 37.50 3.97
630 631 8.215050 ACCATAACAAATCTATACGATGGGAAA 58.785 33.333 0.00 0.00 37.50 3.13
631 632 8.721478 CCATAACAAATCTATACGATGGGAAAG 58.279 37.037 0.00 0.00 31.20 2.62
632 633 9.273016 CATAACAAATCTATACGATGGGAAAGT 57.727 33.333 0.00 0.00 31.20 2.66
735 736 5.859205 AAAGCTTGACTTTGACCAAAGAT 57.141 34.783 24.31 11.69 47.00 2.40
736 737 6.959639 AAAGCTTGACTTTGACCAAAGATA 57.040 33.333 24.31 12.33 47.00 1.98
737 738 7.346751 AAAGCTTGACTTTGACCAAAGATAA 57.653 32.000 24.31 17.24 47.00 1.75
738 739 7.955918 AAAGCTTGACTTTGACCAAAGATAAT 58.044 30.769 24.31 6.33 47.00 1.28
739 740 9.077885 AAAGCTTGACTTTGACCAAAGATAATA 57.922 29.630 24.31 7.00 47.00 0.98
747 748 7.548196 TTTGACCAAAGATAATACACGGATC 57.452 36.000 0.00 0.00 0.00 3.36
748 749 6.228616 TGACCAAAGATAATACACGGATCA 57.771 37.500 0.00 0.00 0.00 2.92
749 750 6.645306 TGACCAAAGATAATACACGGATCAA 58.355 36.000 0.00 0.00 0.00 2.57
750 751 7.106890 TGACCAAAGATAATACACGGATCAAA 58.893 34.615 0.00 0.00 0.00 2.69
751 752 7.773224 TGACCAAAGATAATACACGGATCAAAT 59.227 33.333 0.00 0.00 0.00 2.32
752 753 9.268268 GACCAAAGATAATACACGGATCAAATA 57.732 33.333 0.00 0.00 0.00 1.40
753 754 9.621629 ACCAAAGATAATACACGGATCAAATAA 57.378 29.630 0.00 0.00 0.00 1.40
765 766 6.751888 CACGGATCAAATAAAAATGAAGGGAC 59.248 38.462 0.00 0.00 0.00 4.46
825 826 1.729131 CGCAACCATTCGCAACCAC 60.729 57.895 0.00 0.00 0.00 4.16
873 874 1.542472 GCGTAGAAGAGATAGGAGGCC 59.458 57.143 0.00 0.00 0.00 5.19
874 875 2.164338 CGTAGAAGAGATAGGAGGCCC 58.836 57.143 0.00 0.00 0.00 5.80
930 931 0.101040 CTTGAGGCTCTCAGCTCTCG 59.899 60.000 16.72 0.00 41.75 4.04
931 932 0.322906 TTGAGGCTCTCAGCTCTCGA 60.323 55.000 16.72 0.00 41.75 4.04
932 933 1.029408 TGAGGCTCTCAGCTCTCGAC 61.029 60.000 16.72 0.00 41.99 4.20
1407 1408 3.943381 GGAGGTAATTAAACCAAGGGACG 59.057 47.826 0.31 0.00 42.40 4.79
1435 1436 2.407090 GATCGATCGATTGCATGTCCA 58.593 47.619 29.89 0.00 34.60 4.02
1436 1437 2.307934 TCGATCGATTGCATGTCCAA 57.692 45.000 15.15 0.00 0.00 3.53
1437 1438 2.837498 TCGATCGATTGCATGTCCAAT 58.163 42.857 15.15 0.00 38.09 3.16
1488 1489 7.523293 TTTTATTCTTGTTCCAGCTGATCAA 57.477 32.000 17.39 15.22 32.94 2.57
1519 1520 7.647715 TGTATGTGACTGACGACATATGTATTG 59.352 37.037 8.71 4.56 37.38 1.90
1522 1523 6.871492 TGTGACTGACGACATATGTATTGTTT 59.129 34.615 8.71 0.00 0.00 2.83
1618 1628 0.179250 CGTGATGCAGAACCGTTTCG 60.179 55.000 0.00 0.00 36.78 3.46
1631 1641 3.216147 CCGTTTCGGCAATGAAATTCT 57.784 42.857 0.00 0.00 41.17 2.40
1632 1642 3.171277 CCGTTTCGGCAATGAAATTCTC 58.829 45.455 0.00 0.00 41.17 2.87
1633 1643 3.119849 CCGTTTCGGCAATGAAATTCTCT 60.120 43.478 0.00 0.00 41.17 3.10
1634 1644 4.475944 CGTTTCGGCAATGAAATTCTCTT 58.524 39.130 0.00 0.00 39.80 2.85
1635 1645 4.917415 CGTTTCGGCAATGAAATTCTCTTT 59.083 37.500 0.00 0.00 39.80 2.52
1636 1646 6.083630 CGTTTCGGCAATGAAATTCTCTTTA 58.916 36.000 0.00 0.00 39.80 1.85
1637 1647 6.249260 CGTTTCGGCAATGAAATTCTCTTTAG 59.751 38.462 0.00 0.00 39.80 1.85
1638 1648 5.235305 TCGGCAATGAAATTCTCTTTAGC 57.765 39.130 0.00 0.00 31.22 3.09
1639 1649 4.031028 CGGCAATGAAATTCTCTTTAGCG 58.969 43.478 0.00 0.00 31.22 4.26
1640 1650 4.354587 GGCAATGAAATTCTCTTTAGCGG 58.645 43.478 0.00 0.00 31.22 5.52
1641 1651 3.793492 GCAATGAAATTCTCTTTAGCGGC 59.207 43.478 0.00 0.00 31.22 6.53
1642 1652 4.439289 GCAATGAAATTCTCTTTAGCGGCT 60.439 41.667 7.98 7.98 31.22 5.52
1643 1653 5.644644 CAATGAAATTCTCTTTAGCGGCTT 58.355 37.500 8.26 0.00 31.22 4.35
1644 1654 4.946784 TGAAATTCTCTTTAGCGGCTTC 57.053 40.909 8.26 0.00 0.00 3.86
1689 1725 6.526325 TGTTCATATGTTTATTTTCTGCGTGC 59.474 34.615 1.90 0.00 0.00 5.34
1700 1736 2.358615 TGCGTGCGGCTCTGAATT 60.359 55.556 0.00 0.00 44.05 2.17
1787 1828 1.135024 ACGGGCAATGAAATGATGCAC 60.135 47.619 0.00 0.00 41.80 4.57
1801 1842 3.568000 TGCACGGCATCTTTACCAT 57.432 47.368 0.00 0.00 31.71 3.55
2035 2076 3.769844 GAGTGTCTAAGGTCTTGGATCCA 59.230 47.826 11.44 11.44 32.75 3.41
2116 2157 7.588143 TTTTGTTTGTGAACGTTGATCAAAT 57.412 28.000 10.35 0.00 38.65 2.32
2119 2169 7.850268 TGTTTGTGAACGTTGATCAAATATG 57.150 32.000 10.35 3.34 38.65 1.78
2135 2185 9.256477 GATCAAATATGTATGTGTAAGTTCCGA 57.744 33.333 0.00 0.00 0.00 4.55
2234 2289 2.708759 TCTTTGGAGGGGTTGTAAGGA 58.291 47.619 0.00 0.00 0.00 3.36
2240 2295 2.170817 GGAGGGGTTGTAAGGACATCTC 59.829 54.545 0.00 0.00 34.86 2.75
2245 2300 3.000727 GGTTGTAAGGACATCTCCAACG 58.999 50.000 0.00 0.00 39.39 4.10
2249 2304 0.400213 AAGGACATCTCCAACGGCAA 59.600 50.000 0.00 0.00 39.39 4.52
2299 2544 8.514330 TGCCCGAATACAAAAGAATATTAGTT 57.486 30.769 0.00 0.00 0.00 2.24
2304 2549 8.548721 CGAATACAAAAGAATATTAGTTCGGCT 58.451 33.333 0.00 0.00 33.29 5.52
2346 2591 1.146263 GACCGGCCATCCCAGTAAG 59.854 63.158 0.00 0.00 0.00 2.34
2349 2594 1.407656 CCGGCCATCCCAGTAAGCTA 61.408 60.000 2.24 0.00 0.00 3.32
2378 2623 0.456221 CAAGGAGGTGTCGTCGCTAT 59.544 55.000 0.00 0.00 0.00 2.97
2393 2638 0.739112 GCTATCGCATAGGCAGCCTC 60.739 60.000 20.38 2.21 41.24 4.70
2394 2639 0.108424 CTATCGCATAGGCAGCCTCC 60.108 60.000 20.38 6.93 41.24 4.30
2395 2640 1.877576 TATCGCATAGGCAGCCTCCG 61.878 60.000 20.38 19.06 41.24 4.63
2413 2658 4.838152 CCTCCGCCCCGTGTGATG 62.838 72.222 0.00 0.00 0.00 3.07
2414 2659 4.838152 CTCCGCCCCGTGTGATGG 62.838 72.222 0.00 0.00 0.00 3.51
2421 2666 3.094386 CCCGTGTGATGGGGTTATG 57.906 57.895 0.00 0.00 40.90 1.90
2422 2667 0.254747 CCCGTGTGATGGGGTTATGT 59.745 55.000 0.00 0.00 40.90 2.29
2423 2668 1.487142 CCCGTGTGATGGGGTTATGTA 59.513 52.381 0.00 0.00 40.90 2.29
2424 2669 2.557317 CCGTGTGATGGGGTTATGTAC 58.443 52.381 0.00 0.00 0.00 2.90
2425 2670 2.557317 CGTGTGATGGGGTTATGTACC 58.443 52.381 0.00 0.00 46.99 3.34
2426 2671 2.169769 CGTGTGATGGGGTTATGTACCT 59.830 50.000 0.00 0.00 46.86 3.08
2427 2672 3.385433 CGTGTGATGGGGTTATGTACCTA 59.615 47.826 0.00 0.00 46.86 3.08
2428 2673 4.500887 CGTGTGATGGGGTTATGTACCTAG 60.501 50.000 0.00 0.00 46.86 3.02
2429 2674 3.971305 TGTGATGGGGTTATGTACCTAGG 59.029 47.826 7.41 7.41 46.86 3.02
2430 2675 3.326880 GTGATGGGGTTATGTACCTAGGG 59.673 52.174 14.81 0.00 46.86 3.53
2431 2676 3.050876 TGATGGGGTTATGTACCTAGGGT 60.051 47.826 14.81 1.17 46.86 4.34
2432 2677 4.172441 TGATGGGGTTATGTACCTAGGGTA 59.828 45.833 14.81 0.12 46.86 3.69
2433 2678 4.203342 TGGGGTTATGTACCTAGGGTAG 57.797 50.000 14.81 0.00 46.86 3.18
2442 2687 3.602104 CCTAGGGTAGGGTCACGAA 57.398 57.895 0.00 0.00 42.42 3.85
2443 2688 1.109609 CCTAGGGTAGGGTCACGAAC 58.890 60.000 0.00 0.00 42.42 3.95
2453 2698 2.365408 GGTCACGAACCTGTCCTAAG 57.635 55.000 0.00 0.00 45.45 2.18
2454 2699 1.617357 GGTCACGAACCTGTCCTAAGT 59.383 52.381 0.00 0.00 45.45 2.24
2455 2700 2.821969 GGTCACGAACCTGTCCTAAGTA 59.178 50.000 0.00 0.00 45.45 2.24
2456 2701 3.256631 GGTCACGAACCTGTCCTAAGTAA 59.743 47.826 0.00 0.00 45.45 2.24
2457 2702 4.233005 GTCACGAACCTGTCCTAAGTAAC 58.767 47.826 0.00 0.00 0.00 2.50
2458 2703 4.022503 GTCACGAACCTGTCCTAAGTAACT 60.023 45.833 0.00 0.00 0.00 2.24
2459 2704 4.022589 TCACGAACCTGTCCTAAGTAACTG 60.023 45.833 0.00 0.00 0.00 3.16
2460 2705 4.022589 CACGAACCTGTCCTAAGTAACTGA 60.023 45.833 0.00 0.00 0.00 3.41
2461 2706 4.022503 ACGAACCTGTCCTAAGTAACTGAC 60.023 45.833 0.00 0.00 0.00 3.51
2462 2707 4.617762 CGAACCTGTCCTAAGTAACTGACC 60.618 50.000 0.00 0.00 0.00 4.02
2463 2708 3.171528 ACCTGTCCTAAGTAACTGACCC 58.828 50.000 0.00 0.00 0.00 4.46
2464 2709 3.181409 ACCTGTCCTAAGTAACTGACCCT 60.181 47.826 0.00 0.00 0.00 4.34
2465 2710 4.045079 ACCTGTCCTAAGTAACTGACCCTA 59.955 45.833 0.00 0.00 0.00 3.53
2466 2711 4.645588 CCTGTCCTAAGTAACTGACCCTAG 59.354 50.000 0.00 0.00 0.00 3.02
2467 2712 4.607239 TGTCCTAAGTAACTGACCCTAGG 58.393 47.826 0.06 0.06 36.24 3.02
2468 2713 4.293102 TGTCCTAAGTAACTGACCCTAGGA 59.707 45.833 11.48 0.00 39.34 2.94
2469 2714 4.644234 GTCCTAAGTAACTGACCCTAGGAC 59.356 50.000 11.48 9.63 46.62 3.85
2470 2715 4.293102 TCCTAAGTAACTGACCCTAGGACA 59.707 45.833 11.48 9.33 37.86 4.02
2471 2716 5.043582 TCCTAAGTAACTGACCCTAGGACAT 60.044 44.000 11.48 0.00 37.86 3.06
2472 2717 5.302313 CCTAAGTAACTGACCCTAGGACATC 59.698 48.000 11.48 5.51 36.71 3.06
2473 2718 3.644335 AGTAACTGACCCTAGGACATCC 58.356 50.000 11.48 0.00 0.00 3.51
2474 2719 1.880941 AACTGACCCTAGGACATCCC 58.119 55.000 11.48 0.00 36.42 3.85
2476 2721 2.224077 ACTGACCCTAGGACATCCCTA 58.776 52.381 11.48 0.00 45.48 3.53
2485 2730 3.322191 AGGACATCCCTAGAAGAGGTC 57.678 52.381 15.19 15.19 45.48 3.85
2486 2731 1.957877 GGACATCCCTAGAAGAGGTCG 59.042 57.143 16.30 0.00 44.01 4.79
2487 2732 1.338655 GACATCCCTAGAAGAGGTCGC 59.661 57.143 10.44 0.00 45.03 5.19
2488 2733 0.676736 CATCCCTAGAAGAGGTCGCC 59.323 60.000 0.00 0.00 45.03 5.54
2489 2734 0.558712 ATCCCTAGAAGAGGTCGCCT 59.441 55.000 0.00 0.00 45.03 5.52
2490 2735 0.335361 TCCCTAGAAGAGGTCGCCTT 59.665 55.000 0.00 0.00 45.03 4.35
2491 2736 0.747852 CCCTAGAAGAGGTCGCCTTC 59.252 60.000 0.00 0.00 45.03 3.46
2492 2737 0.747852 CCTAGAAGAGGTCGCCTTCC 59.252 60.000 0.00 0.00 40.98 3.46
2493 2738 1.475403 CTAGAAGAGGTCGCCTTCCA 58.525 55.000 0.00 0.00 40.54 3.53
2494 2739 1.407258 CTAGAAGAGGTCGCCTTCCAG 59.593 57.143 0.00 0.00 40.54 3.86
2495 2740 0.543174 AGAAGAGGTCGCCTTCCAGT 60.543 55.000 0.00 0.00 40.54 4.00
2496 2741 0.108567 GAAGAGGTCGCCTTCCAGTC 60.109 60.000 0.00 0.00 35.26 3.51
2497 2742 1.878656 AAGAGGTCGCCTTCCAGTCG 61.879 60.000 0.00 0.00 31.76 4.18
2498 2743 2.282958 AGGTCGCCTTCCAGTCGA 60.283 61.111 0.00 0.00 0.00 4.20
2500 2745 2.126031 GTCGCCTTCCAGTCGACC 60.126 66.667 13.01 0.00 44.62 4.79
2501 2746 2.599281 TCGCCTTCCAGTCGACCA 60.599 61.111 13.01 0.00 0.00 4.02
2502 2747 2.204461 TCGCCTTCCAGTCGACCAA 61.204 57.895 13.01 1.85 0.00 3.67
2503 2748 2.027625 CGCCTTCCAGTCGACCAAC 61.028 63.158 13.01 0.00 0.00 3.77
2504 2749 2.027625 GCCTTCCAGTCGACCAACG 61.028 63.158 13.01 0.00 44.09 4.10
2512 2757 4.486887 TCGACCAACGAGGACTCA 57.513 55.556 5.70 0.00 46.45 3.41
2513 2758 1.954528 TCGACCAACGAGGACTCAC 59.045 57.895 5.70 0.00 46.45 3.51
2514 2759 0.536687 TCGACCAACGAGGACTCACT 60.537 55.000 5.70 0.00 46.45 3.41
2515 2760 0.109689 CGACCAACGAGGACTCACTC 60.110 60.000 5.70 0.00 45.77 3.51
2522 2767 3.796667 GAGGACTCACTCGACCAAC 57.203 57.895 0.00 0.00 0.00 3.77
2523 2768 0.109689 GAGGACTCACTCGACCAACG 60.110 60.000 0.00 0.00 44.09 4.10
2531 2776 3.844741 TCGACCAACGAGGACACA 58.155 55.556 5.70 0.00 46.45 3.72
2532 2777 1.361271 TCGACCAACGAGGACACAC 59.639 57.895 5.70 0.00 46.45 3.82
2533 2778 1.105167 TCGACCAACGAGGACACACT 61.105 55.000 5.70 0.00 46.45 3.55
2534 2779 0.663568 CGACCAACGAGGACACACTC 60.664 60.000 5.70 0.00 45.77 3.51
2541 2786 1.080434 GAGGACACACTCGACTGGC 60.080 63.158 0.00 0.00 0.00 4.85
2542 2787 2.048127 GGACACACTCGACTGGCC 60.048 66.667 0.00 0.00 0.00 5.36
2543 2788 2.574955 GGACACACTCGACTGGCCT 61.575 63.158 3.32 0.00 32.05 5.19
2544 2789 1.373497 GACACACTCGACTGGCCTG 60.373 63.158 8.29 8.29 0.00 4.85
2545 2790 1.806461 GACACACTCGACTGGCCTGA 61.806 60.000 17.64 1.94 0.00 3.86
2546 2791 1.367471 CACACTCGACTGGCCTGAA 59.633 57.895 17.64 0.48 0.00 3.02
2547 2792 0.668706 CACACTCGACTGGCCTGAAG 60.669 60.000 17.64 12.30 0.00 3.02
2548 2793 1.079543 CACTCGACTGGCCTGAAGG 60.080 63.158 17.64 4.92 38.53 3.46
2549 2794 1.228894 ACTCGACTGGCCTGAAGGA 60.229 57.895 17.64 8.92 37.39 3.36
2550 2795 1.216710 CTCGACTGGCCTGAAGGAC 59.783 63.158 17.64 0.00 45.93 3.85
2551 2796 1.228894 TCGACTGGCCTGAAGGACT 60.229 57.895 17.64 0.00 45.91 3.85
2552 2797 1.216710 CGACTGGCCTGAAGGACTC 59.783 63.158 17.64 1.06 45.91 3.36
2553 2798 1.216710 GACTGGCCTGAAGGACTCG 59.783 63.158 17.64 0.00 45.91 4.18
2554 2799 1.228894 ACTGGCCTGAAGGACTCGA 60.229 57.895 17.64 0.00 45.91 4.04
2555 2800 1.216710 CTGGCCTGAAGGACTCGAC 59.783 63.158 3.32 0.00 45.91 4.20
2556 2801 2.232298 CTGGCCTGAAGGACTCGACC 62.232 65.000 3.32 0.00 45.91 4.79
2557 2802 2.283529 GGCCTGAAGGACTCGACCA 61.284 63.158 0.00 0.00 41.12 4.02
2558 2803 1.079750 GCCTGAAGGACTCGACCAC 60.080 63.158 0.00 0.00 37.39 4.16
2559 2804 1.213013 CCTGAAGGACTCGACCACG 59.787 63.158 0.00 0.00 37.39 4.94
2560 2805 1.241990 CCTGAAGGACTCGACCACGA 61.242 60.000 0.00 0.00 41.24 4.35
2561 2806 2.756731 CCTGAAGGACTCGACCACGAA 61.757 57.143 0.00 0.00 42.23 3.85
2562 2807 4.586815 CCTGAAGGACTCGACCACGAAG 62.587 59.091 0.00 0.00 42.23 3.79
2569 2814 3.016997 TCGACCACGAAGACTCACT 57.983 52.632 0.00 0.00 45.74 3.41
2570 2815 0.873054 TCGACCACGAAGACTCACTC 59.127 55.000 0.00 0.00 45.74 3.51
2571 2816 0.452950 CGACCACGAAGACTCACTCG 60.453 60.000 0.00 0.00 42.66 4.18
2572 2817 0.873054 GACCACGAAGACTCACTCGA 59.127 55.000 2.16 0.00 0.00 4.04
2573 2818 0.592148 ACCACGAAGACTCACTCGAC 59.408 55.000 2.16 0.00 0.00 4.20
2574 2819 0.109689 CCACGAAGACTCACTCGACC 60.110 60.000 2.16 0.00 0.00 4.79
2575 2820 0.591659 CACGAAGACTCACTCGACCA 59.408 55.000 2.16 0.00 0.00 4.02
2576 2821 0.592148 ACGAAGACTCACTCGACCAC 59.408 55.000 2.16 0.00 0.00 4.16
2577 2822 0.109689 CGAAGACTCACTCGACCACC 60.110 60.000 0.00 0.00 0.00 4.61
2578 2823 0.959553 GAAGACTCACTCGACCACCA 59.040 55.000 0.00 0.00 0.00 4.17
2579 2824 0.962489 AAGACTCACTCGACCACCAG 59.038 55.000 0.00 0.00 0.00 4.00
2580 2825 0.896019 AGACTCACTCGACCACCAGG 60.896 60.000 0.00 0.00 42.21 4.45
2581 2826 0.894184 GACTCACTCGACCACCAGGA 60.894 60.000 0.00 0.00 38.69 3.86
2582 2827 0.896019 ACTCACTCGACCACCAGGAG 60.896 60.000 0.00 0.00 38.69 3.69
2583 2828 1.599606 CTCACTCGACCACCAGGAGG 61.600 65.000 0.33 0.33 38.69 4.30
2593 2838 3.811702 CCAGGAGGTCAAGAGGCA 58.188 61.111 0.00 0.00 0.00 4.75
2594 2839 1.298014 CCAGGAGGTCAAGAGGCAC 59.702 63.158 0.00 0.00 0.00 5.01
2608 2853 4.374702 GCACTCTGCACCGCAACG 62.375 66.667 0.00 0.00 44.26 4.10
2621 2866 3.651562 CCGCAACGGTCTGTAATTAAG 57.348 47.619 0.00 0.00 42.73 1.85
2622 2867 2.997986 CCGCAACGGTCTGTAATTAAGT 59.002 45.455 0.00 0.00 42.73 2.24
2623 2868 4.175516 CCGCAACGGTCTGTAATTAAGTA 58.824 43.478 0.00 0.00 42.73 2.24
2624 2869 4.266976 CCGCAACGGTCTGTAATTAAGTAG 59.733 45.833 0.00 0.00 42.73 2.57
2625 2870 5.097529 CGCAACGGTCTGTAATTAAGTAGA 58.902 41.667 0.00 0.00 0.00 2.59
2626 2871 5.004156 CGCAACGGTCTGTAATTAAGTAGAC 59.996 44.000 13.43 13.43 38.98 2.59
2627 2872 6.098017 GCAACGGTCTGTAATTAAGTAGACT 58.902 40.000 17.96 4.76 39.50 3.24
2628 2873 6.589139 GCAACGGTCTGTAATTAAGTAGACTT 59.411 38.462 17.96 0.00 39.50 3.01
2629 2874 7.117379 GCAACGGTCTGTAATTAAGTAGACTTT 59.883 37.037 17.96 12.19 39.50 2.66
2630 2875 9.630098 CAACGGTCTGTAATTAAGTAGACTTTA 57.370 33.333 17.96 0.00 39.50 1.85
2657 2902 4.764143 AGGCACTTTATGTGGGGC 57.236 55.556 0.56 0.00 46.27 5.80
2658 2903 1.378514 AGGCACTTTATGTGGGGCG 60.379 57.895 0.56 0.00 46.27 6.13
2659 2904 1.677633 GGCACTTTATGTGGGGCGT 60.678 57.895 0.56 0.00 46.27 5.68
2660 2905 1.248101 GGCACTTTATGTGGGGCGTT 61.248 55.000 0.56 0.00 46.27 4.84
2661 2906 1.455248 GCACTTTATGTGGGGCGTTA 58.545 50.000 0.56 0.00 46.27 3.18
2662 2907 1.131693 GCACTTTATGTGGGGCGTTAC 59.868 52.381 0.56 0.00 46.27 2.50
2663 2908 1.741145 CACTTTATGTGGGGCGTTACC 59.259 52.381 0.00 0.00 42.68 2.85
2664 2909 1.351683 ACTTTATGTGGGGCGTTACCA 59.648 47.619 0.00 0.00 42.05 3.25
2665 2910 2.014128 CTTTATGTGGGGCGTTACCAG 58.986 52.381 0.00 0.00 42.05 4.00
2666 2911 0.985760 TTATGTGGGGCGTTACCAGT 59.014 50.000 0.00 0.00 42.05 4.00
2667 2912 1.863325 TATGTGGGGCGTTACCAGTA 58.137 50.000 0.00 0.00 42.05 2.74
2668 2913 0.985760 ATGTGGGGCGTTACCAGTAA 59.014 50.000 0.00 0.00 42.05 2.24
2669 2914 0.035176 TGTGGGGCGTTACCAGTAAC 59.965 55.000 10.09 10.09 42.05 2.50
2676 2921 3.148340 GTTACCAGTAACGCCCCAG 57.852 57.895 5.02 0.00 36.47 4.45
2677 2922 0.609662 GTTACCAGTAACGCCCCAGA 59.390 55.000 5.02 0.00 36.47 3.86
2678 2923 0.609662 TTACCAGTAACGCCCCAGAC 59.390 55.000 0.00 0.00 0.00 3.51
2679 2924 0.251922 TACCAGTAACGCCCCAGACT 60.252 55.000 0.00 0.00 0.00 3.24
2680 2925 1.125711 ACCAGTAACGCCCCAGACTT 61.126 55.000 0.00 0.00 0.00 3.01
2681 2926 0.899720 CCAGTAACGCCCCAGACTTA 59.100 55.000 0.00 0.00 0.00 2.24
2682 2927 1.276989 CCAGTAACGCCCCAGACTTAA 59.723 52.381 0.00 0.00 0.00 1.85
2683 2928 2.344025 CAGTAACGCCCCAGACTTAAC 58.656 52.381 0.00 0.00 0.00 2.01
2684 2929 2.028385 CAGTAACGCCCCAGACTTAACT 60.028 50.000 0.00 0.00 0.00 2.24
2685 2930 2.233186 AGTAACGCCCCAGACTTAACTC 59.767 50.000 0.00 0.00 0.00 3.01
2686 2931 1.053424 AACGCCCCAGACTTAACTCA 58.947 50.000 0.00 0.00 0.00 3.41
2687 2932 0.320697 ACGCCCCAGACTTAACTCAC 59.679 55.000 0.00 0.00 0.00 3.51
2688 2933 0.391263 CGCCCCAGACTTAACTCACC 60.391 60.000 0.00 0.00 0.00 4.02
2689 2934 0.984995 GCCCCAGACTTAACTCACCT 59.015 55.000 0.00 0.00 0.00 4.00
2690 2935 1.351350 GCCCCAGACTTAACTCACCTT 59.649 52.381 0.00 0.00 0.00 3.50
2691 2936 2.570302 GCCCCAGACTTAACTCACCTTA 59.430 50.000 0.00 0.00 0.00 2.69
2692 2937 3.008704 GCCCCAGACTTAACTCACCTTAA 59.991 47.826 0.00 0.00 0.00 1.85
2693 2938 4.506095 GCCCCAGACTTAACTCACCTTAAA 60.506 45.833 0.00 0.00 0.00 1.52
2694 2939 5.001874 CCCCAGACTTAACTCACCTTAAAC 58.998 45.833 0.00 0.00 0.00 2.01
2695 2940 5.001874 CCCAGACTTAACTCACCTTAAACC 58.998 45.833 0.00 0.00 0.00 3.27
2696 2941 5.221864 CCCAGACTTAACTCACCTTAAACCT 60.222 44.000 0.00 0.00 0.00 3.50
2697 2942 6.296803 CCAGACTTAACTCACCTTAAACCTT 58.703 40.000 0.00 0.00 0.00 3.50
2698 2943 6.427242 CCAGACTTAACTCACCTTAAACCTTC 59.573 42.308 0.00 0.00 0.00 3.46
2699 2944 6.427242 CAGACTTAACTCACCTTAAACCTTCC 59.573 42.308 0.00 0.00 0.00 3.46
2700 2945 5.628130 ACTTAACTCACCTTAAACCTTCCC 58.372 41.667 0.00 0.00 0.00 3.97
2701 2946 3.520691 AACTCACCTTAAACCTTCCCC 57.479 47.619 0.00 0.00 0.00 4.81
2702 2947 2.714808 ACTCACCTTAAACCTTCCCCT 58.285 47.619 0.00 0.00 0.00 4.79
2703 2948 3.878086 ACTCACCTTAAACCTTCCCCTA 58.122 45.455 0.00 0.00 0.00 3.53
2704 2949 3.586174 ACTCACCTTAAACCTTCCCCTAC 59.414 47.826 0.00 0.00 0.00 3.18
2705 2950 2.568509 TCACCTTAAACCTTCCCCTACG 59.431 50.000 0.00 0.00 0.00 3.51
2706 2951 2.303890 CACCTTAAACCTTCCCCTACGT 59.696 50.000 0.00 0.00 0.00 3.57
2707 2952 2.303890 ACCTTAAACCTTCCCCTACGTG 59.696 50.000 0.00 0.00 0.00 4.49
2708 2953 2.355412 CCTTAAACCTTCCCCTACGTGG 60.355 54.545 0.00 0.00 0.00 4.94
2717 2962 4.473520 CCTACGTGGGCTGGCTGG 62.474 72.222 4.50 0.00 0.00 4.85
2718 2963 4.473520 CTACGTGGGCTGGCTGGG 62.474 72.222 0.00 0.00 0.00 4.45
2734 2979 3.075005 GGGTCCTGGCGCACTCTA 61.075 66.667 10.83 0.00 0.00 2.43
2735 2980 2.435693 GGGTCCTGGCGCACTCTAT 61.436 63.158 10.83 0.00 0.00 1.98
2736 2981 1.113517 GGGTCCTGGCGCACTCTATA 61.114 60.000 10.83 0.00 0.00 1.31
2737 2982 0.969894 GGTCCTGGCGCACTCTATAT 59.030 55.000 10.83 0.00 0.00 0.86
2738 2983 2.168496 GGTCCTGGCGCACTCTATATA 58.832 52.381 10.83 0.00 0.00 0.86
2739 2984 2.561419 GGTCCTGGCGCACTCTATATAA 59.439 50.000 10.83 0.00 0.00 0.98
2740 2985 3.367498 GGTCCTGGCGCACTCTATATAAG 60.367 52.174 10.83 0.00 0.00 1.73
2741 2986 2.231478 TCCTGGCGCACTCTATATAAGC 59.769 50.000 10.83 0.00 0.00 3.09
2742 2987 2.611518 CTGGCGCACTCTATATAAGCC 58.388 52.381 10.83 0.00 43.05 4.35
2743 2988 2.743636 GGCGCACTCTATATAAGCCA 57.256 50.000 10.83 0.00 42.37 4.75
2744 2989 2.288825 TGGCGCACTCTATATAAGCCAC 60.289 50.000 10.83 0.00 46.73 5.01
2745 2990 2.338500 GCGCACTCTATATAAGCCACC 58.662 52.381 0.30 0.00 0.00 4.61
2746 2991 2.931320 GCGCACTCTATATAAGCCACCC 60.931 54.545 0.30 0.00 0.00 4.61
2747 2992 2.353803 CGCACTCTATATAAGCCACCCC 60.354 54.545 0.00 0.00 0.00 4.95
2748 2993 2.027100 GCACTCTATATAAGCCACCCCC 60.027 54.545 0.00 0.00 0.00 5.40
2762 3007 3.406200 CCCCCTCCACAGGCAGAG 61.406 72.222 0.00 0.00 38.72 3.35
2765 3010 3.406200 CCTCCACAGGCAGAGGGG 61.406 72.222 0.00 0.00 45.08 4.79
2766 3011 2.608988 CTCCACAGGCAGAGGGGT 60.609 66.667 0.00 0.00 0.00 4.95
2767 3012 2.121963 TCCACAGGCAGAGGGGTT 60.122 61.111 0.00 0.00 0.00 4.11
2768 3013 2.190488 CTCCACAGGCAGAGGGGTTC 62.190 65.000 0.00 0.00 0.00 3.62
2769 3014 2.046892 CACAGGCAGAGGGGTTCG 60.047 66.667 0.00 0.00 0.00 3.95
2770 3015 3.322466 ACAGGCAGAGGGGTTCGG 61.322 66.667 0.00 0.00 0.00 4.30
2771 3016 4.785453 CAGGCAGAGGGGTTCGGC 62.785 72.222 0.00 0.00 44.98 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 4.927267 AGGTATGTTTCCATGGTCTTGA 57.073 40.909 12.58 0.00 32.29 3.02
80 81 3.512680 CCATGGTCTACGTGAGAGTTTC 58.487 50.000 2.57 0.00 38.41 2.78
117 118 6.609876 TGGTATGGTAAGCATTGTCCATTAT 58.390 36.000 0.00 0.00 41.65 1.28
301 302 2.424601 TGAGCTTATTGCAAGCATGTCC 59.575 45.455 11.29 0.00 45.30 4.02
345 346 6.427853 GCCAAAGTGCTTTTCAAGGAATTATT 59.572 34.615 0.00 0.00 36.12 1.40
485 486 6.377146 ACGGTTGCCTTGAGTTATATTTGAAT 59.623 34.615 0.00 0.00 0.00 2.57
553 554 1.675641 GAAAGGACATGCGGTGCCT 60.676 57.895 0.00 0.00 38.89 4.75
602 603 9.042450 TCCCATCGTATAGATTTGTTATGGTAT 57.958 33.333 0.00 0.00 37.52 2.73
603 604 8.425237 TCCCATCGTATAGATTTGTTATGGTA 57.575 34.615 0.00 0.00 37.52 3.25
604 605 7.311092 TCCCATCGTATAGATTTGTTATGGT 57.689 36.000 0.00 0.00 37.52 3.55
605 606 8.615878 TTTCCCATCGTATAGATTTGTTATGG 57.384 34.615 0.00 0.00 37.52 2.74
606 607 9.273016 ACTTTCCCATCGTATAGATTTGTTATG 57.727 33.333 0.00 0.00 37.52 1.90
714 715 6.959639 TTATCTTTGGTCAAAGTCAAGCTT 57.040 33.333 19.13 0.00 45.88 3.74
715 716 7.665559 TGTATTATCTTTGGTCAAAGTCAAGCT 59.334 33.333 19.13 7.02 45.88 3.74
716 717 7.750903 GTGTATTATCTTTGGTCAAAGTCAAGC 59.249 37.037 19.13 12.58 45.88 4.01
717 718 7.957484 CGTGTATTATCTTTGGTCAAAGTCAAG 59.043 37.037 19.13 10.56 45.88 3.02
718 719 7.094975 CCGTGTATTATCTTTGGTCAAAGTCAA 60.095 37.037 19.13 14.96 45.88 3.18
719 720 6.370442 CCGTGTATTATCTTTGGTCAAAGTCA 59.630 38.462 19.13 8.71 45.88 3.41
720 721 6.592607 TCCGTGTATTATCTTTGGTCAAAGTC 59.407 38.462 19.13 8.11 45.88 3.01
721 722 6.469410 TCCGTGTATTATCTTTGGTCAAAGT 58.531 36.000 19.13 11.42 45.88 2.66
722 723 6.978343 TCCGTGTATTATCTTTGGTCAAAG 57.022 37.500 15.18 15.18 46.82 2.77
723 724 7.106890 TGATCCGTGTATTATCTTTGGTCAAA 58.893 34.615 0.00 0.00 0.00 2.69
724 725 6.645306 TGATCCGTGTATTATCTTTGGTCAA 58.355 36.000 0.00 0.00 0.00 3.18
725 726 6.228616 TGATCCGTGTATTATCTTTGGTCA 57.771 37.500 0.00 0.00 0.00 4.02
726 727 7.548196 TTTGATCCGTGTATTATCTTTGGTC 57.452 36.000 0.00 0.00 0.00 4.02
727 728 9.621629 TTATTTGATCCGTGTATTATCTTTGGT 57.378 29.630 0.00 0.00 0.00 3.67
736 737 9.801873 CCTTCATTTTTATTTGATCCGTGTATT 57.198 29.630 0.00 0.00 0.00 1.89
737 738 8.413229 CCCTTCATTTTTATTTGATCCGTGTAT 58.587 33.333 0.00 0.00 0.00 2.29
738 739 7.612244 TCCCTTCATTTTTATTTGATCCGTGTA 59.388 33.333 0.00 0.00 0.00 2.90
739 740 6.435904 TCCCTTCATTTTTATTTGATCCGTGT 59.564 34.615 0.00 0.00 0.00 4.49
740 741 6.751888 GTCCCTTCATTTTTATTTGATCCGTG 59.248 38.462 0.00 0.00 0.00 4.94
741 742 6.663523 AGTCCCTTCATTTTTATTTGATCCGT 59.336 34.615 0.00 0.00 0.00 4.69
742 743 7.100458 AGTCCCTTCATTTTTATTTGATCCG 57.900 36.000 0.00 0.00 0.00 4.18
778 779 7.229106 AGCCCACGTTCAAAAAGTAGTAAATTA 59.771 33.333 0.00 0.00 0.00 1.40
794 795 2.740826 TTGCGCTAGCCCACGTTC 60.741 61.111 9.73 0.00 44.33 3.95
795 796 3.047877 GTTGCGCTAGCCCACGTT 61.048 61.111 9.73 0.00 44.33 3.99
825 826 5.396362 CCATCGCGTTTTTCATTTGCTATAG 59.604 40.000 5.77 0.00 0.00 1.31
930 931 1.520342 GATGCCGGTCTGAGCTGTC 60.520 63.158 1.90 0.00 0.00 3.51
931 932 1.620739 ATGATGCCGGTCTGAGCTGT 61.621 55.000 1.90 0.00 0.00 4.40
932 933 1.145598 ATGATGCCGGTCTGAGCTG 59.854 57.895 1.90 0.00 0.00 4.24
1269 1270 2.892425 GGGTGCTTGATCCGCTCG 60.892 66.667 5.79 0.00 0.00 5.03
1430 1431 3.623703 CATGGAGATGGACAATTGGACA 58.376 45.455 10.83 8.54 0.00 4.02
1431 1432 2.360165 GCATGGAGATGGACAATTGGAC 59.640 50.000 10.83 2.48 0.00 4.02
1432 1433 2.242965 AGCATGGAGATGGACAATTGGA 59.757 45.455 10.83 0.00 0.00 3.53
1433 1434 2.662866 AGCATGGAGATGGACAATTGG 58.337 47.619 10.83 0.00 0.00 3.16
1434 1435 3.952323 AGAAGCATGGAGATGGACAATTG 59.048 43.478 3.24 3.24 0.00 2.32
1435 1436 4.246712 AGAAGCATGGAGATGGACAATT 57.753 40.909 0.00 0.00 0.00 2.32
1436 1437 3.947612 AGAAGCATGGAGATGGACAAT 57.052 42.857 0.00 0.00 0.00 2.71
1437 1438 3.265221 AGAAGAAGCATGGAGATGGACAA 59.735 43.478 0.00 0.00 0.00 3.18
1466 1467 6.149973 CAGTTGATCAGCTGGAACAAGAATAA 59.850 38.462 26.87 0.00 38.74 1.40
1467 1468 5.645067 CAGTTGATCAGCTGGAACAAGAATA 59.355 40.000 26.87 0.00 38.74 1.75
1468 1469 4.458295 CAGTTGATCAGCTGGAACAAGAAT 59.542 41.667 26.87 0.00 38.74 2.40
1469 1470 3.817084 CAGTTGATCAGCTGGAACAAGAA 59.183 43.478 26.87 0.00 38.74 2.52
1470 1471 3.405831 CAGTTGATCAGCTGGAACAAGA 58.594 45.455 26.87 0.00 38.74 3.02
1488 1489 1.886542 TCGTCAGTCACATACAGCAGT 59.113 47.619 0.00 0.00 0.00 4.40
1519 1520 2.604462 GCATGCCATTCGATCCAAAAAC 59.396 45.455 6.36 0.00 0.00 2.43
1522 1523 1.472188 TGCATGCCATTCGATCCAAA 58.528 45.000 16.68 0.00 0.00 3.28
1618 1628 4.354587 CCGCTAAAGAGAATTTCATTGCC 58.645 43.478 0.00 0.00 0.00 4.52
1619 1629 3.793492 GCCGCTAAAGAGAATTTCATTGC 59.207 43.478 0.00 0.00 0.00 3.56
1620 1630 5.240713 AGCCGCTAAAGAGAATTTCATTG 57.759 39.130 0.00 0.00 0.00 2.82
1621 1631 5.415701 TGAAGCCGCTAAAGAGAATTTCATT 59.584 36.000 0.00 0.00 0.00 2.57
1622 1632 4.943705 TGAAGCCGCTAAAGAGAATTTCAT 59.056 37.500 0.00 0.00 0.00 2.57
1623 1633 4.323417 TGAAGCCGCTAAAGAGAATTTCA 58.677 39.130 0.00 0.00 0.00 2.69
1624 1634 4.631813 TCTGAAGCCGCTAAAGAGAATTTC 59.368 41.667 0.00 0.00 0.00 2.17
1625 1635 4.579869 TCTGAAGCCGCTAAAGAGAATTT 58.420 39.130 0.00 0.00 0.00 1.82
1626 1636 4.207891 TCTGAAGCCGCTAAAGAGAATT 57.792 40.909 0.00 0.00 0.00 2.17
1627 1637 3.895232 TCTGAAGCCGCTAAAGAGAAT 57.105 42.857 0.00 0.00 0.00 2.40
1628 1638 3.326747 GTTCTGAAGCCGCTAAAGAGAA 58.673 45.455 0.00 0.00 0.00 2.87
1629 1639 2.671351 CGTTCTGAAGCCGCTAAAGAGA 60.671 50.000 0.00 0.00 0.00 3.10
1630 1640 1.656095 CGTTCTGAAGCCGCTAAAGAG 59.344 52.381 0.00 0.00 0.00 2.85
1631 1641 1.271379 TCGTTCTGAAGCCGCTAAAGA 59.729 47.619 0.00 0.00 0.00 2.52
1632 1642 1.390463 GTCGTTCTGAAGCCGCTAAAG 59.610 52.381 0.00 0.00 0.00 1.85
1633 1643 1.269883 TGTCGTTCTGAAGCCGCTAAA 60.270 47.619 0.00 0.00 0.00 1.85
1634 1644 0.315886 TGTCGTTCTGAAGCCGCTAA 59.684 50.000 0.00 0.00 0.00 3.09
1635 1645 0.530744 ATGTCGTTCTGAAGCCGCTA 59.469 50.000 0.00 0.00 0.00 4.26
1636 1646 0.737715 GATGTCGTTCTGAAGCCGCT 60.738 55.000 0.00 0.00 0.00 5.52
1637 1647 1.014044 TGATGTCGTTCTGAAGCCGC 61.014 55.000 0.00 0.00 0.00 6.53
1638 1648 1.428448 TTGATGTCGTTCTGAAGCCG 58.572 50.000 0.00 0.00 0.00 5.52
1639 1649 2.029728 CGATTGATGTCGTTCTGAAGCC 59.970 50.000 0.00 0.00 36.88 4.35
1640 1650 3.295553 CGATTGATGTCGTTCTGAAGC 57.704 47.619 0.00 0.00 36.88 3.86
1689 1725 2.351418 TGCACGAAATAATTCAGAGCCG 59.649 45.455 0.00 0.00 35.15 5.52
1787 1828 0.027979 CGTGCATGGTAAAGATGCCG 59.972 55.000 0.00 0.00 44.76 5.69
1796 1837 0.179111 GAGCTACTGCGTGCATGGTA 60.179 55.000 8.27 1.57 45.42 3.25
1801 1842 0.033366 TTTCTGAGCTACTGCGTGCA 59.967 50.000 0.00 0.00 45.42 4.57
1805 1846 3.515630 TGATCTTTTCTGAGCTACTGCG 58.484 45.455 0.00 0.00 45.42 5.18
1861 1902 6.882610 TTCATAGCCAATTGATCATGTACC 57.117 37.500 7.12 0.00 0.00 3.34
2035 2076 3.011517 CTAGGTGGCCAGCACCCT 61.012 66.667 34.87 25.35 43.48 4.34
2089 2130 6.382608 TGATCAACGTTCACAAACAAAAAGA 58.617 32.000 0.00 0.00 34.93 2.52
2116 2157 5.918426 TGGTCGGAACTTACACATACATA 57.082 39.130 0.00 0.00 0.00 2.29
2119 2169 5.927954 TTTTGGTCGGAACTTACACATAC 57.072 39.130 0.00 0.00 0.00 2.39
2210 2265 4.838423 CCTTACAACCCCTCCAAAGAAAAT 59.162 41.667 0.00 0.00 0.00 1.82
2219 2274 2.170817 GAGATGTCCTTACAACCCCTCC 59.829 54.545 0.00 0.00 39.58 4.30
2234 2289 0.396435 TGAGTTGCCGTTGGAGATGT 59.604 50.000 0.00 0.00 0.00 3.06
2240 2295 5.469479 AGAAAATTTATGAGTTGCCGTTGG 58.531 37.500 0.00 0.00 0.00 3.77
2245 2300 5.030936 GCGAGAGAAAATTTATGAGTTGCC 58.969 41.667 0.00 0.00 0.00 4.52
2249 2304 5.705441 TGGTTGCGAGAGAAAATTTATGAGT 59.295 36.000 0.00 0.00 0.00 3.41
2278 2523 8.548721 AGCCGAACTAATATTCTTTTGTATTCG 58.451 33.333 0.00 0.00 0.00 3.34
2299 2544 0.035152 AGAAATGCATGGACAGCCGA 60.035 50.000 0.00 0.00 36.79 5.54
2304 2549 0.971959 GGGGCAGAAATGCATGGACA 60.972 55.000 0.00 0.00 36.33 4.02
2346 2591 0.175989 CTCCTTGGTCGGGAAGTAGC 59.824 60.000 0.00 0.00 31.92 3.58
2349 2594 3.807368 CCTCCTTGGTCGGGAAGT 58.193 61.111 0.00 0.00 31.92 3.01
2378 2623 3.916544 CGGAGGCTGCCTATGCGA 61.917 66.667 23.44 0.00 41.78 5.10
2396 2641 4.838152 CATCACACGGGGCGGAGG 62.838 72.222 0.00 0.00 0.00 4.30
2397 2642 4.838152 CCATCACACGGGGCGGAG 62.838 72.222 0.00 0.00 0.00 4.63
2403 2648 0.254747 ACATAACCCCATCACACGGG 59.745 55.000 0.00 0.00 45.70 5.28
2404 2649 2.557317 GTACATAACCCCATCACACGG 58.443 52.381 0.00 0.00 0.00 4.94
2405 2650 2.557317 GGTACATAACCCCATCACACG 58.443 52.381 0.00 0.00 43.16 4.49
2416 2661 4.586421 GTGACCCTACCCTAGGTACATAAC 59.414 50.000 8.29 0.00 44.73 1.89
2417 2662 4.689705 CGTGACCCTACCCTAGGTACATAA 60.690 50.000 8.29 0.00 44.73 1.90
2418 2663 3.181440 CGTGACCCTACCCTAGGTACATA 60.181 52.174 8.29 0.00 44.73 2.29
2419 2664 2.423947 CGTGACCCTACCCTAGGTACAT 60.424 54.545 8.29 0.00 44.73 2.29
2420 2665 1.064463 CGTGACCCTACCCTAGGTACA 60.064 57.143 8.29 0.00 44.73 2.90
2421 2666 1.212935 TCGTGACCCTACCCTAGGTAC 59.787 57.143 8.29 0.00 44.73 3.34
2422 2667 1.595311 TCGTGACCCTACCCTAGGTA 58.405 55.000 8.29 0.00 44.73 3.08
2423 2668 0.706433 TTCGTGACCCTACCCTAGGT 59.294 55.000 8.29 0.00 44.73 3.08
2424 2669 1.109609 GTTCGTGACCCTACCCTAGG 58.890 60.000 0.06 0.06 45.81 3.02
2425 2670 1.109609 GGTTCGTGACCCTACCCTAG 58.890 60.000 0.06 0.00 43.06 3.02
2426 2671 3.288099 GGTTCGTGACCCTACCCTA 57.712 57.895 0.06 0.00 43.06 3.53
2427 2672 4.125239 GGTTCGTGACCCTACCCT 57.875 61.111 0.06 0.00 43.06 4.34
2435 2680 4.022503 AGTTACTTAGGACAGGTTCGTGAC 60.023 45.833 0.00 0.00 0.00 3.67
2436 2681 4.022589 CAGTTACTTAGGACAGGTTCGTGA 60.023 45.833 0.00 0.00 0.00 4.35
2437 2682 4.022589 TCAGTTACTTAGGACAGGTTCGTG 60.023 45.833 0.00 0.00 0.00 4.35
2438 2683 4.022503 GTCAGTTACTTAGGACAGGTTCGT 60.023 45.833 0.00 0.00 0.00 3.85
2439 2684 4.483311 GTCAGTTACTTAGGACAGGTTCG 58.517 47.826 0.00 0.00 0.00 3.95
2440 2685 4.322574 GGGTCAGTTACTTAGGACAGGTTC 60.323 50.000 4.20 0.00 32.00 3.62
2441 2686 3.581770 GGGTCAGTTACTTAGGACAGGTT 59.418 47.826 4.20 0.00 32.00 3.50
2442 2687 3.171528 GGGTCAGTTACTTAGGACAGGT 58.828 50.000 4.20 0.00 32.00 4.00
2443 2688 3.442076 AGGGTCAGTTACTTAGGACAGG 58.558 50.000 4.20 0.00 32.00 4.00
2444 2689 4.645588 CCTAGGGTCAGTTACTTAGGACAG 59.354 50.000 0.00 0.00 37.47 3.51
2445 2690 4.293102 TCCTAGGGTCAGTTACTTAGGACA 59.707 45.833 9.46 0.00 38.43 4.02
2446 2691 4.644234 GTCCTAGGGTCAGTTACTTAGGAC 59.356 50.000 18.63 18.63 46.22 3.85
2447 2692 4.293102 TGTCCTAGGGTCAGTTACTTAGGA 59.707 45.833 9.46 5.85 39.73 2.94
2448 2693 4.607239 TGTCCTAGGGTCAGTTACTTAGG 58.393 47.826 9.46 1.66 37.03 2.69
2449 2694 5.302313 GGATGTCCTAGGGTCAGTTACTTAG 59.698 48.000 9.46 0.00 0.00 2.18
2450 2695 5.206587 GGATGTCCTAGGGTCAGTTACTTA 58.793 45.833 9.46 0.00 0.00 2.24
2451 2696 4.031611 GGATGTCCTAGGGTCAGTTACTT 58.968 47.826 9.46 0.00 0.00 2.24
2452 2697 3.630311 GGGATGTCCTAGGGTCAGTTACT 60.630 52.174 9.46 0.00 35.95 2.24
2453 2698 2.699321 GGGATGTCCTAGGGTCAGTTAC 59.301 54.545 9.46 0.00 35.95 2.50
2454 2699 2.590611 AGGGATGTCCTAGGGTCAGTTA 59.409 50.000 9.46 0.00 45.98 2.24
2455 2700 1.366435 AGGGATGTCCTAGGGTCAGTT 59.634 52.381 9.46 0.00 45.98 3.16
2456 2701 1.019650 AGGGATGTCCTAGGGTCAGT 58.980 55.000 9.46 0.19 45.98 3.41
2457 2702 3.957188 AGGGATGTCCTAGGGTCAG 57.043 57.895 9.46 0.00 45.98 3.51
2474 2719 1.407258 CTGGAAGGCGACCTCTTCTAG 59.593 57.143 0.00 0.00 41.20 2.43
2475 2720 1.272536 ACTGGAAGGCGACCTCTTCTA 60.273 52.381 0.00 0.00 40.17 2.10
2476 2721 0.543174 ACTGGAAGGCGACCTCTTCT 60.543 55.000 0.00 0.00 40.17 2.85
2477 2722 0.108567 GACTGGAAGGCGACCTCTTC 60.109 60.000 0.00 0.00 39.30 2.87
2478 2723 1.976112 GACTGGAAGGCGACCTCTT 59.024 57.895 0.00 0.00 39.30 2.85
2479 2724 3.701454 GACTGGAAGGCGACCTCT 58.299 61.111 0.00 0.00 39.30 3.69
2486 2731 2.027625 CGTTGGTCGACTGGAAGGC 61.028 63.158 16.46 0.00 42.86 4.35
2487 2732 0.388649 CTCGTTGGTCGACTGGAAGG 60.389 60.000 16.46 11.28 44.01 3.46
2488 2733 0.388649 CCTCGTTGGTCGACTGGAAG 60.389 60.000 16.46 6.98 44.01 3.46
2489 2734 0.824595 TCCTCGTTGGTCGACTGGAA 60.825 55.000 16.46 3.35 44.01 3.53
2490 2735 1.228337 TCCTCGTTGGTCGACTGGA 60.228 57.895 16.46 10.47 44.01 3.86
2491 2736 1.080705 GTCCTCGTTGGTCGACTGG 60.081 63.158 16.46 8.42 44.01 4.00
2492 2737 0.109689 GAGTCCTCGTTGGTCGACTG 60.110 60.000 16.46 3.50 44.01 3.51
2493 2738 0.536687 TGAGTCCTCGTTGGTCGACT 60.537 55.000 16.46 0.00 44.01 4.18
2494 2739 0.386985 GTGAGTCCTCGTTGGTCGAC 60.387 60.000 7.13 7.13 44.01 4.20
2495 2740 0.536687 AGTGAGTCCTCGTTGGTCGA 60.537 55.000 0.00 0.00 46.83 4.20
2496 2741 0.109689 GAGTGAGTCCTCGTTGGTCG 60.110 60.000 0.00 0.00 41.41 4.79
2497 2742 3.796667 GAGTGAGTCCTCGTTGGTC 57.203 57.895 0.00 0.00 37.07 4.02
2504 2749 0.109689 CGTTGGTCGAGTGAGTCCTC 60.110 60.000 0.00 0.00 42.86 3.71
2505 2750 0.536687 TCGTTGGTCGAGTGAGTCCT 60.537 55.000 0.00 0.00 44.01 3.85
2506 2751 1.954528 TCGTTGGTCGAGTGAGTCC 59.045 57.895 0.00 0.00 44.01 3.85
2514 2759 1.105167 AGTGTGTCCTCGTTGGTCGA 61.105 55.000 0.00 0.00 46.83 4.20
2515 2760 0.663568 GAGTGTGTCCTCGTTGGTCG 60.664 60.000 0.00 0.00 41.41 4.79
2516 2761 3.196613 GAGTGTGTCCTCGTTGGTC 57.803 57.895 0.00 0.00 37.07 4.02
2523 2768 1.080434 GCCAGTCGAGTGTGTCCTC 60.080 63.158 18.64 0.00 0.00 3.71
2524 2769 2.574955 GGCCAGTCGAGTGTGTCCT 61.575 63.158 18.64 0.00 0.00 3.85
2525 2770 2.048127 GGCCAGTCGAGTGTGTCC 60.048 66.667 18.64 12.43 0.00 4.02
2526 2771 1.373497 CAGGCCAGTCGAGTGTGTC 60.373 63.158 18.64 11.58 0.00 3.67
2527 2772 1.399744 TTCAGGCCAGTCGAGTGTGT 61.400 55.000 18.64 0.20 0.00 3.72
2528 2773 0.668706 CTTCAGGCCAGTCGAGTGTG 60.669 60.000 18.64 10.74 0.00 3.82
2529 2774 1.668294 CTTCAGGCCAGTCGAGTGT 59.332 57.895 18.64 0.00 0.00 3.55
2530 2775 1.079543 CCTTCAGGCCAGTCGAGTG 60.080 63.158 13.55 13.55 0.00 3.51
2531 2776 1.228894 TCCTTCAGGCCAGTCGAGT 60.229 57.895 5.01 0.00 34.44 4.18
2532 2777 1.216710 GTCCTTCAGGCCAGTCGAG 59.783 63.158 5.01 0.00 34.44 4.04
2533 2778 1.228894 AGTCCTTCAGGCCAGTCGA 60.229 57.895 5.01 0.00 34.44 4.20
2534 2779 1.216710 GAGTCCTTCAGGCCAGTCG 59.783 63.158 5.01 0.00 34.44 4.18
2535 2780 1.216710 CGAGTCCTTCAGGCCAGTC 59.783 63.158 5.01 0.00 34.44 3.51
2536 2781 1.228894 TCGAGTCCTTCAGGCCAGT 60.229 57.895 5.01 0.00 34.44 4.00
2537 2782 1.216710 GTCGAGTCCTTCAGGCCAG 59.783 63.158 5.01 0.00 34.44 4.85
2538 2783 2.283529 GGTCGAGTCCTTCAGGCCA 61.284 63.158 5.01 0.00 34.44 5.36
2539 2784 2.283529 TGGTCGAGTCCTTCAGGCC 61.284 63.158 0.00 0.00 34.44 5.19
2540 2785 1.079750 GTGGTCGAGTCCTTCAGGC 60.080 63.158 0.00 0.00 34.44 4.85
2541 2786 1.213013 CGTGGTCGAGTCCTTCAGG 59.787 63.158 0.00 0.00 39.71 3.86
2542 2787 0.596577 TTCGTGGTCGAGTCCTTCAG 59.403 55.000 0.00 0.00 46.81 3.02
2543 2788 0.596577 CTTCGTGGTCGAGTCCTTCA 59.403 55.000 0.00 0.00 46.81 3.02
2544 2789 0.879765 TCTTCGTGGTCGAGTCCTTC 59.120 55.000 0.00 0.00 46.81 3.46
2545 2790 0.597072 GTCTTCGTGGTCGAGTCCTT 59.403 55.000 0.00 0.00 46.81 3.36
2546 2791 0.250814 AGTCTTCGTGGTCGAGTCCT 60.251 55.000 0.00 0.00 46.81 3.85
2547 2792 0.168568 GAGTCTTCGTGGTCGAGTCC 59.831 60.000 0.00 0.00 46.81 3.85
2548 2793 0.873054 TGAGTCTTCGTGGTCGAGTC 59.127 55.000 0.00 0.00 46.81 3.36
2549 2794 0.592148 GTGAGTCTTCGTGGTCGAGT 59.408 55.000 0.00 0.00 46.81 4.18
2550 2795 0.875728 AGTGAGTCTTCGTGGTCGAG 59.124 55.000 0.00 0.00 46.81 4.04
2551 2796 0.873054 GAGTGAGTCTTCGTGGTCGA 59.127 55.000 0.00 0.00 44.66 4.20
2552 2797 0.452950 CGAGTGAGTCTTCGTGGTCG 60.453 60.000 8.78 0.00 38.55 4.79
2553 2798 0.873054 TCGAGTGAGTCTTCGTGGTC 59.127 55.000 14.37 0.00 0.00 4.02
2554 2799 0.592148 GTCGAGTGAGTCTTCGTGGT 59.408 55.000 14.37 0.00 0.00 4.16
2555 2800 0.109689 GGTCGAGTGAGTCTTCGTGG 60.110 60.000 14.37 0.00 0.00 4.94
2556 2801 0.591659 TGGTCGAGTGAGTCTTCGTG 59.408 55.000 14.37 0.00 0.00 4.35
2557 2802 0.592148 GTGGTCGAGTGAGTCTTCGT 59.408 55.000 14.37 0.00 0.00 3.85
2558 2803 0.109689 GGTGGTCGAGTGAGTCTTCG 60.110 60.000 10.22 10.22 0.00 3.79
2559 2804 0.959553 TGGTGGTCGAGTGAGTCTTC 59.040 55.000 0.00 0.00 0.00 2.87
2560 2805 0.962489 CTGGTGGTCGAGTGAGTCTT 59.038 55.000 0.00 0.00 0.00 3.01
2561 2806 0.896019 CCTGGTGGTCGAGTGAGTCT 60.896 60.000 0.00 0.00 0.00 3.24
2562 2807 0.894184 TCCTGGTGGTCGAGTGAGTC 60.894 60.000 0.00 0.00 34.23 3.36
2563 2808 0.896019 CTCCTGGTGGTCGAGTGAGT 60.896 60.000 0.00 0.00 34.23 3.41
2564 2809 1.599606 CCTCCTGGTGGTCGAGTGAG 61.600 65.000 6.63 0.00 34.23 3.51
2565 2810 1.606601 CCTCCTGGTGGTCGAGTGA 60.607 63.158 6.63 0.00 34.23 3.41
2566 2811 1.908793 ACCTCCTGGTGGTCGAGTG 60.909 63.158 14.54 0.00 46.51 3.51
2567 2812 2.526628 ACCTCCTGGTGGTCGAGT 59.473 61.111 14.54 0.00 46.51 4.18
2576 2821 1.197430 AGTGCCTCTTGACCTCCTGG 61.197 60.000 0.00 0.00 39.83 4.45
2577 2822 0.248843 GAGTGCCTCTTGACCTCCTG 59.751 60.000 0.00 0.00 0.00 3.86
2578 2823 0.116143 AGAGTGCCTCTTGACCTCCT 59.884 55.000 0.00 0.00 37.60 3.69
2579 2824 0.248843 CAGAGTGCCTCTTGACCTCC 59.751 60.000 2.32 0.00 38.99 4.30
2580 2825 0.390998 GCAGAGTGCCTCTTGACCTC 60.391 60.000 2.32 0.00 38.99 3.85
2581 2826 1.123861 TGCAGAGTGCCTCTTGACCT 61.124 55.000 2.32 0.00 44.23 3.85
2582 2827 0.952984 GTGCAGAGTGCCTCTTGACC 60.953 60.000 2.32 0.00 44.23 4.02
2583 2828 0.952984 GGTGCAGAGTGCCTCTTGAC 60.953 60.000 2.32 3.03 44.23 3.18
2584 2829 1.372683 GGTGCAGAGTGCCTCTTGA 59.627 57.895 2.32 0.00 44.23 3.02
2585 2830 2.031516 CGGTGCAGAGTGCCTCTTG 61.032 63.158 2.32 1.31 44.23 3.02
2586 2831 2.345244 CGGTGCAGAGTGCCTCTT 59.655 61.111 2.32 0.00 44.23 2.85
2587 2832 4.385405 GCGGTGCAGAGTGCCTCT 62.385 66.667 0.00 0.00 44.23 3.69
2588 2833 4.687215 TGCGGTGCAGAGTGCCTC 62.687 66.667 0.00 0.00 44.23 4.70
2589 2834 4.254709 TTGCGGTGCAGAGTGCCT 62.255 61.111 0.00 0.00 44.23 4.75
2590 2835 4.030452 GTTGCGGTGCAGAGTGCC 62.030 66.667 0.00 0.00 44.23 5.01
2591 2836 4.374702 CGTTGCGGTGCAGAGTGC 62.375 66.667 0.00 0.00 45.29 4.40
2592 2837 3.716006 CCGTTGCGGTGCAGAGTG 61.716 66.667 0.00 0.00 42.73 3.51
2602 2847 5.004156 GTCTACTTAATTACAGACCGTTGCG 59.996 44.000 8.78 0.00 32.93 4.85
2603 2848 6.098017 AGTCTACTTAATTACAGACCGTTGC 58.902 40.000 13.59 0.00 38.53 4.17
2604 2849 8.530269 AAAGTCTACTTAATTACAGACCGTTG 57.470 34.615 13.59 0.00 38.53 4.10
2643 2888 2.876485 TGGTAACGCCCCACATAAAGTG 60.876 50.000 0.00 0.00 44.56 3.16
2644 2889 1.351683 TGGTAACGCCCCACATAAAGT 59.648 47.619 0.00 0.00 42.51 2.66
2645 2890 2.014128 CTGGTAACGCCCCACATAAAG 58.986 52.381 0.00 0.00 42.51 1.85
2646 2891 1.351683 ACTGGTAACGCCCCACATAAA 59.648 47.619 0.00 0.00 42.51 1.40
2647 2892 0.985760 ACTGGTAACGCCCCACATAA 59.014 50.000 0.00 0.00 42.51 1.90
2648 2893 1.863325 TACTGGTAACGCCCCACATA 58.137 50.000 0.00 0.00 42.51 2.29
2649 2894 0.985760 TTACTGGTAACGCCCCACAT 59.014 50.000 0.00 0.00 42.51 3.21
2650 2895 0.035176 GTTACTGGTAACGCCCCACA 59.965 55.000 7.70 0.00 36.47 4.17
2651 2896 2.845019 GTTACTGGTAACGCCCCAC 58.155 57.895 7.70 0.00 36.47 4.61
2658 2903 0.609662 TCTGGGGCGTTACTGGTAAC 59.390 55.000 12.13 12.13 41.37 2.50
2659 2904 0.609662 GTCTGGGGCGTTACTGGTAA 59.390 55.000 0.00 0.00 0.00 2.85
2660 2905 0.251922 AGTCTGGGGCGTTACTGGTA 60.252 55.000 0.00 0.00 0.00 3.25
2661 2906 1.125711 AAGTCTGGGGCGTTACTGGT 61.126 55.000 0.00 0.00 0.00 4.00
2662 2907 0.899720 TAAGTCTGGGGCGTTACTGG 59.100 55.000 0.00 0.00 0.00 4.00
2663 2908 2.028385 AGTTAAGTCTGGGGCGTTACTG 60.028 50.000 0.00 0.00 0.00 2.74
2664 2909 2.233186 GAGTTAAGTCTGGGGCGTTACT 59.767 50.000 2.87 0.00 0.00 2.24
2665 2910 2.028748 TGAGTTAAGTCTGGGGCGTTAC 60.029 50.000 11.52 0.00 0.00 2.50
2666 2911 2.028748 GTGAGTTAAGTCTGGGGCGTTA 60.029 50.000 11.52 0.00 0.00 3.18
2667 2912 1.053424 TGAGTTAAGTCTGGGGCGTT 58.947 50.000 11.52 0.00 0.00 4.84
2668 2913 0.320697 GTGAGTTAAGTCTGGGGCGT 59.679 55.000 11.52 0.00 0.00 5.68
2669 2914 0.391263 GGTGAGTTAAGTCTGGGGCG 60.391 60.000 11.52 0.00 0.00 6.13
2670 2915 0.984995 AGGTGAGTTAAGTCTGGGGC 59.015 55.000 11.52 0.00 0.00 5.80
2671 2916 4.903045 TTAAGGTGAGTTAAGTCTGGGG 57.097 45.455 11.52 0.00 0.00 4.96
2672 2917 5.001874 GGTTTAAGGTGAGTTAAGTCTGGG 58.998 45.833 11.52 0.00 0.00 4.45
2673 2918 5.866207 AGGTTTAAGGTGAGTTAAGTCTGG 58.134 41.667 11.52 0.00 0.00 3.86
2674 2919 6.427242 GGAAGGTTTAAGGTGAGTTAAGTCTG 59.573 42.308 11.52 0.00 0.00 3.51
2675 2920 6.465464 GGGAAGGTTTAAGGTGAGTTAAGTCT 60.465 42.308 11.52 0.00 0.00 3.24
2676 2921 5.704515 GGGAAGGTTTAAGGTGAGTTAAGTC 59.295 44.000 3.15 3.15 0.00 3.01
2677 2922 5.457197 GGGGAAGGTTTAAGGTGAGTTAAGT 60.457 44.000 0.00 0.00 0.00 2.24
2678 2923 5.008331 GGGGAAGGTTTAAGGTGAGTTAAG 58.992 45.833 0.00 0.00 0.00 1.85
2679 2924 4.666431 AGGGGAAGGTTTAAGGTGAGTTAA 59.334 41.667 0.00 0.00 0.00 2.01
2680 2925 4.245308 AGGGGAAGGTTTAAGGTGAGTTA 58.755 43.478 0.00 0.00 0.00 2.24
2681 2926 3.061369 AGGGGAAGGTTTAAGGTGAGTT 58.939 45.455 0.00 0.00 0.00 3.01
2682 2927 2.714808 AGGGGAAGGTTTAAGGTGAGT 58.285 47.619 0.00 0.00 0.00 3.41
2683 2928 3.369157 CGTAGGGGAAGGTTTAAGGTGAG 60.369 52.174 0.00 0.00 0.00 3.51
2684 2929 2.568509 CGTAGGGGAAGGTTTAAGGTGA 59.431 50.000 0.00 0.00 0.00 4.02
2685 2930 2.303890 ACGTAGGGGAAGGTTTAAGGTG 59.696 50.000 0.00 0.00 0.00 4.00
2686 2931 2.303890 CACGTAGGGGAAGGTTTAAGGT 59.696 50.000 0.00 0.00 0.00 3.50
2687 2932 2.355412 CCACGTAGGGGAAGGTTTAAGG 60.355 54.545 0.00 0.00 0.00 2.69
2688 2933 2.981898 CCACGTAGGGGAAGGTTTAAG 58.018 52.381 0.00 0.00 0.00 1.85
2700 2945 4.473520 CCAGCCAGCCCACGTAGG 62.474 72.222 0.00 0.00 37.03 3.18
2701 2946 4.473520 CCCAGCCAGCCCACGTAG 62.474 72.222 0.00 0.00 0.00 3.51
2717 2962 1.113517 TATAGAGTGCGCCAGGACCC 61.114 60.000 4.18 0.00 39.75 4.46
2718 2963 0.969894 ATATAGAGTGCGCCAGGACC 59.030 55.000 4.18 0.00 39.75 4.46
2719 2964 3.839293 CTTATATAGAGTGCGCCAGGAC 58.161 50.000 4.18 0.00 39.15 3.85
2720 2965 2.231478 GCTTATATAGAGTGCGCCAGGA 59.769 50.000 4.18 0.00 0.00 3.86
2721 2966 2.611518 GCTTATATAGAGTGCGCCAGG 58.388 52.381 4.18 0.00 0.00 4.45
2722 2967 2.029020 TGGCTTATATAGAGTGCGCCAG 60.029 50.000 4.18 0.00 40.76 4.85
2723 2968 1.967779 TGGCTTATATAGAGTGCGCCA 59.032 47.619 4.18 0.00 43.12 5.69
2724 2969 2.338500 GTGGCTTATATAGAGTGCGCC 58.662 52.381 4.18 0.00 36.64 6.53
2725 2970 2.338500 GGTGGCTTATATAGAGTGCGC 58.662 52.381 0.00 0.00 0.00 6.09
2726 2971 2.353803 GGGGTGGCTTATATAGAGTGCG 60.354 54.545 0.00 0.00 0.00 5.34
2727 2972 2.027100 GGGGGTGGCTTATATAGAGTGC 60.027 54.545 0.00 0.00 0.00 4.40
2728 2973 3.983044 GGGGGTGGCTTATATAGAGTG 57.017 52.381 0.00 0.00 0.00 3.51
2745 2990 3.406200 CTCTGCCTGTGGAGGGGG 61.406 72.222 0.00 0.00 40.19 5.40
2746 2991 3.406200 CCTCTGCCTGTGGAGGGG 61.406 72.222 0.00 0.00 43.78 4.79
2748 2993 3.406200 CCCCTCTGCCTGTGGAGG 61.406 72.222 0.00 0.00 46.22 4.30
2749 2994 2.190488 GAACCCCTCTGCCTGTGGAG 62.190 65.000 0.00 0.00 0.00 3.86
2750 2995 2.121963 AACCCCTCTGCCTGTGGA 60.122 61.111 0.00 0.00 0.00 4.02
2751 2996 2.352805 GAACCCCTCTGCCTGTGG 59.647 66.667 0.00 0.00 0.00 4.17
2752 2997 2.046892 CGAACCCCTCTGCCTGTG 60.047 66.667 0.00 0.00 0.00 3.66
2753 2998 3.322466 CCGAACCCCTCTGCCTGT 61.322 66.667 0.00 0.00 0.00 4.00
2754 2999 4.785453 GCCGAACCCCTCTGCCTG 62.785 72.222 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.