Multiple sequence alignment - TraesCS6A01G107600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G107600 chr6A 100.000 5167 0 0 1 5167 76265990 76271156 0.000000e+00 9542.0
1 TraesCS6A01G107600 chr6A 89.124 331 34 2 1835 2164 87235388 87235059 1.340000e-110 411.0
2 TraesCS6A01G107600 chr6A 89.894 188 14 3 2275 2458 87235060 87234874 2.400000e-58 237.0
3 TraesCS6A01G107600 chr6A 86.624 157 21 0 2453 2609 450687912 450687756 1.910000e-39 174.0
4 TraesCS6A01G107600 chr6A 93.407 91 3 2 1654 1744 76267561 76267648 1.170000e-26 132.0
5 TraesCS6A01G107600 chr6A 93.407 91 3 2 1572 1659 76267643 76267733 1.170000e-26 132.0
6 TraesCS6A01G107600 chr6A 83.544 79 8 5 3065 3141 450687074 450686999 9.280000e-08 69.4
7 TraesCS6A01G107600 chr7D 95.142 2470 92 11 1017 3481 4804740 4802294 0.000000e+00 3871.0
8 TraesCS6A01G107600 chr7D 95.646 1493 51 10 3679 5166 4802229 4800746 0.000000e+00 2385.0
9 TraesCS6A01G107600 chr7D 92.063 189 13 2 3512 3700 213380241 213380427 1.100000e-66 265.0
10 TraesCS6A01G107600 chr7D 87.662 154 19 0 2453 2606 416415180 416415333 4.110000e-41 180.0
11 TraesCS6A01G107600 chr7D 96.739 92 2 1 1653 1744 4804202 4804112 8.960000e-33 152.0
12 TraesCS6A01G107600 chr7D 93.407 91 3 2 1572 1659 4804117 4804027 1.170000e-26 132.0
13 TraesCS6A01G107600 chr7D 95.946 74 3 0 952 1025 4804838 4804765 2.530000e-23 121.0
14 TraesCS6A01G107600 chr7B 93.821 1489 65 16 3679 5165 746879877 746881340 0.000000e+00 2215.0
15 TraesCS6A01G107600 chr7B 88.782 624 51 12 2637 3257 750241757 750241150 0.000000e+00 747.0
16 TraesCS6A01G107600 chr7B 88.324 531 57 3 3679 4208 750240814 750240288 2.630000e-177 632.0
17 TraesCS6A01G107600 chr7B 89.778 450 39 4 2275 2718 720371918 720371470 2.090000e-158 569.0
18 TraesCS6A01G107600 chr7B 90.060 332 29 3 1835 2164 720372246 720371917 1.330000e-115 427.0
19 TraesCS6A01G107600 chr7B 82.020 406 56 13 1244 1641 91263220 91262824 3.860000e-86 329.0
20 TraesCS6A01G107600 chr7B 91.703 229 18 1 3251 3479 750241101 750240874 3.000000e-82 316.0
21 TraesCS6A01G107600 chr7B 92.973 185 11 1 3500 3684 588861668 588861850 8.530000e-68 268.0
22 TraesCS6A01G107600 chr7B 97.059 136 4 0 3346 3481 746879677 746879812 4.020000e-56 230.0
23 TraesCS6A01G107600 chr7B 88.372 86 6 2 660 742 696932151 696932067 3.290000e-17 100.0
24 TraesCS6A01G107600 chr7B 100.000 37 0 0 3481 3517 746879842 746879878 9.280000e-08 69.4
25 TraesCS6A01G107600 chr3D 95.712 653 25 3 1 651 429950323 429949672 0.000000e+00 1048.0
26 TraesCS6A01G107600 chr3D 78.166 229 28 9 1017 1244 147168811 147168604 5.430000e-25 126.0
27 TraesCS6A01G107600 chr4B 95.107 654 28 4 1 651 54438322 54437670 0.000000e+00 1027.0
28 TraesCS6A01G107600 chr4B 82.258 372 51 12 1244 1609 621072415 621072777 1.810000e-79 307.0
29 TraesCS6A01G107600 chr2D 95.107 654 28 4 1 651 545066121 545065469 0.000000e+00 1027.0
30 TraesCS6A01G107600 chr1D 94.954 654 29 4 1 651 17684827 17684175 0.000000e+00 1022.0
31 TraesCS6A01G107600 chr1D 94.946 653 29 4 1 651 139646709 139646059 0.000000e+00 1020.0
32 TraesCS6A01G107600 chr1D 79.935 613 94 14 4156 4748 35779446 35780049 1.720000e-114 424.0
33 TraesCS6A01G107600 chr1D 97.590 166 4 0 3516 3681 36612297 36612132 8.470000e-73 285.0
34 TraesCS6A01G107600 chr7A 94.946 653 30 3 1 651 457794200 457793549 0.000000e+00 1020.0
35 TraesCS6A01G107600 chr7A 94.297 263 15 0 1182 1444 677735756 677736018 2.240000e-108 403.0
36 TraesCS6A01G107600 chr7A 89.759 166 14 1 858 1023 677733437 677733599 5.240000e-50 209.0
37 TraesCS6A01G107600 chr5D 94.954 654 28 4 1 651 79602123 79601472 0.000000e+00 1020.0
38 TraesCS6A01G107600 chr5D 84.412 340 39 8 1194 1531 321792488 321792161 6.450000e-84 322.0
39 TraesCS6A01G107600 chr5D 95.930 172 7 0 3509 3680 274578005 274578176 3.940000e-71 279.0
40 TraesCS6A01G107600 chr4D 94.946 653 30 3 1 651 474502876 474503527 0.000000e+00 1020.0
41 TraesCS6A01G107600 chr4D 91.314 449 30 6 2275 2718 385854134 385853690 5.720000e-169 604.0
42 TraesCS6A01G107600 chr4D 88.889 234 21 3 1932 2164 385854362 385854133 3.050000e-72 283.0
43 TraesCS6A01G107600 chr2A 94.946 653 30 3 1 651 570700809 570701460 0.000000e+00 1020.0
44 TraesCS6A01G107600 chr2A 82.367 431 52 14 1221 1641 278542045 278542461 2.290000e-93 353.0
45 TraesCS6A01G107600 chr2A 94.444 72 4 0 2387 2458 211953953 211953882 1.520000e-20 111.0
46 TraesCS6A01G107600 chr4A 91.494 482 32 5 1182 1659 7116148 7116624 0.000000e+00 654.0
47 TraesCS6A01G107600 chr4A 82.870 432 49 15 1221 1641 616659034 616658617 1.060000e-96 364.0
48 TraesCS6A01G107600 chr4A 95.628 183 7 1 1653 1835 7116534 7116715 5.060000e-75 292.0
49 TraesCS6A01G107600 chr4A 93.889 180 10 1 3502 3680 582529962 582530141 2.370000e-68 270.0
50 TraesCS6A01G107600 chr4A 87.500 168 14 2 1017 1184 7112230 7112390 2.460000e-43 187.0
51 TraesCS6A01G107600 chr2B 89.532 449 40 5 2275 2718 693086888 693087334 3.490000e-156 562.0
52 TraesCS6A01G107600 chr2B 90.060 332 29 3 1835 2164 693086560 693086889 1.330000e-115 427.0
53 TraesCS6A01G107600 chr2B 95.906 171 6 1 3516 3686 174794986 174794817 5.100000e-70 276.0
54 TraesCS6A01G107600 chr5B 95.273 275 13 0 1017 1291 298325548 298325822 2.210000e-118 436.0
55 TraesCS6A01G107600 chr5B 90.030 331 31 2 1835 2164 343834414 343834085 1.330000e-115 427.0
56 TraesCS6A01G107600 chr5B 89.894 188 14 3 2275 2458 343834086 343833900 2.400000e-58 237.0
57 TraesCS6A01G107600 chr5B 95.946 74 3 0 952 1025 298325450 298325523 2.530000e-23 121.0
58 TraesCS6A01G107600 chr6B 89.362 329 33 2 1837 2164 88299798 88299471 3.720000e-111 412.0
59 TraesCS6A01G107600 chr6B 90.374 187 14 3 2275 2458 88299472 88299287 5.170000e-60 243.0
60 TraesCS6A01G107600 chr6D 94.054 185 9 2 3515 3697 145466650 145466466 3.940000e-71 279.0
61 TraesCS6A01G107600 chr3B 94.413 179 9 1 3503 3681 655849597 655849420 1.830000e-69 274.0
62 TraesCS6A01G107600 chr3B 95.376 173 7 1 3516 3688 709282396 709282567 1.830000e-69 274.0
63 TraesCS6A01G107600 chr5A 85.841 226 25 6 1253 1474 675402471 675402693 3.110000e-57 233.0
64 TraesCS6A01G107600 chr1A 86.916 107 8 4 650 750 25302864 25302970 1.180000e-21 115.0
65 TraesCS6A01G107600 chr1A 89.873 79 7 1 666 744 552409341 552409264 3.290000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G107600 chr6A 76265990 76271156 5166 False 3268.666667 9542 95.604667 1 5167 3 chr6A.!!$F1 5166
1 TraesCS6A01G107600 chr6A 87234874 87235388 514 True 324.000000 411 89.509000 1835 2458 2 chr6A.!!$R1 623
2 TraesCS6A01G107600 chr7D 4800746 4804838 4092 True 1332.200000 3871 95.376000 952 5166 5 chr7D.!!$R1 4214
3 TraesCS6A01G107600 chr7B 746879677 746881340 1663 False 838.133333 2215 96.960000 3346 5165 3 chr7B.!!$F2 1819
4 TraesCS6A01G107600 chr7B 750240288 750241757 1469 True 565.000000 747 89.603000 2637 4208 3 chr7B.!!$R4 1571
5 TraesCS6A01G107600 chr7B 720371470 720372246 776 True 498.000000 569 89.919000 1835 2718 2 chr7B.!!$R3 883
6 TraesCS6A01G107600 chr3D 429949672 429950323 651 True 1048.000000 1048 95.712000 1 651 1 chr3D.!!$R2 650
7 TraesCS6A01G107600 chr4B 54437670 54438322 652 True 1027.000000 1027 95.107000 1 651 1 chr4B.!!$R1 650
8 TraesCS6A01G107600 chr2D 545065469 545066121 652 True 1027.000000 1027 95.107000 1 651 1 chr2D.!!$R1 650
9 TraesCS6A01G107600 chr1D 17684175 17684827 652 True 1022.000000 1022 94.954000 1 651 1 chr1D.!!$R1 650
10 TraesCS6A01G107600 chr1D 139646059 139646709 650 True 1020.000000 1020 94.946000 1 651 1 chr1D.!!$R3 650
11 TraesCS6A01G107600 chr1D 35779446 35780049 603 False 424.000000 424 79.935000 4156 4748 1 chr1D.!!$F1 592
12 TraesCS6A01G107600 chr7A 457793549 457794200 651 True 1020.000000 1020 94.946000 1 651 1 chr7A.!!$R1 650
13 TraesCS6A01G107600 chr7A 677733437 677736018 2581 False 306.000000 403 92.028000 858 1444 2 chr7A.!!$F1 586
14 TraesCS6A01G107600 chr5D 79601472 79602123 651 True 1020.000000 1020 94.954000 1 651 1 chr5D.!!$R1 650
15 TraesCS6A01G107600 chr4D 474502876 474503527 651 False 1020.000000 1020 94.946000 1 651 1 chr4D.!!$F1 650
16 TraesCS6A01G107600 chr4D 385853690 385854362 672 True 443.500000 604 90.101500 1932 2718 2 chr4D.!!$R1 786
17 TraesCS6A01G107600 chr2A 570700809 570701460 651 False 1020.000000 1020 94.946000 1 651 1 chr2A.!!$F2 650
18 TraesCS6A01G107600 chr4A 7112230 7116715 4485 False 377.666667 654 91.540667 1017 1835 3 chr4A.!!$F2 818
19 TraesCS6A01G107600 chr2B 693086560 693087334 774 False 494.500000 562 89.796000 1835 2718 2 chr2B.!!$F1 883
20 TraesCS6A01G107600 chr5B 343833900 343834414 514 True 332.000000 427 89.962000 1835 2458 2 chr5B.!!$R1 623
21 TraesCS6A01G107600 chr6B 88299287 88299798 511 True 327.500000 412 89.868000 1837 2458 2 chr6B.!!$R1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 539 0.036010 CGATGGAAGGCCTTGTCTGT 60.036 55.0 26.25 8.03 34.31 3.41 F
788 794 0.174845 CTACCCCTCGCATGAAACGA 59.825 55.0 0.00 0.00 38.02 3.85 F
790 796 0.250553 ACCCCTCGCATGAAACGAAA 60.251 50.0 0.00 0.00 39.39 3.46 F
1721 7495 0.319641 GGACAGGTTGACGACAGGAC 60.320 60.0 0.00 0.00 0.00 3.85 F
3531 9407 0.410663 TTCTACTCCCTCCGTTCCCA 59.589 55.0 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 7741 0.392336 GGCCTGGTGAACAATTTGCA 59.608 50.000 0.00 0.0 0.00 4.08 R
2609 8394 1.228306 TAACCGCCACCACTTTGGG 60.228 57.895 0.00 0.0 43.37 4.12 R
2644 8429 9.651913 CCTTAAATAATTTAAACTGCACACCAT 57.348 29.630 0.00 0.0 34.93 3.55 R
3617 9493 1.134788 ACAAGTGGCTACATACGGAGC 60.135 52.381 2.02 0.0 38.00 4.70 R
4874 10775 1.680735 GTGTCAAATGCCTCCAACACA 59.319 47.619 0.00 0.0 37.53 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.356398 GGGAGGGATGTGGTTGGTTTA 59.644 52.381 0.00 0.00 0.00 2.01
128 129 2.976185 TGGTAGACAAGTGGGATGTTGA 59.024 45.455 0.00 0.00 0.00 3.18
137 139 5.598005 ACAAGTGGGATGTTGATGAAAAAGA 59.402 36.000 0.00 0.00 0.00 2.52
194 196 0.389757 TGGTCACAAACGACGGATGA 59.610 50.000 8.83 0.00 36.73 2.92
212 214 3.986996 TGACAGACACACCATCATCAT 57.013 42.857 0.00 0.00 0.00 2.45
430 435 1.077787 GGCATGGGGATTGACGACA 60.078 57.895 0.00 0.00 0.00 4.35
460 465 1.654220 CACCAGGCCAGTTTGTTCG 59.346 57.895 5.01 0.00 0.00 3.95
518 523 6.316390 GGTTGTTGGAGATAAGAATGAACGAT 59.684 38.462 0.00 0.00 0.00 3.73
534 539 0.036010 CGATGGAAGGCCTTGTCTGT 60.036 55.000 26.25 8.03 34.31 3.41
539 544 4.919774 TGGAAGGCCTTGTCTGTAAATA 57.080 40.909 26.25 0.00 34.31 1.40
550 555 3.973973 TGTCTGTAAATATGGAGAGGGGG 59.026 47.826 0.00 0.00 0.00 5.40
555 560 1.838611 AATATGGAGAGGGGGTGCAT 58.161 50.000 0.00 0.00 0.00 3.96
670 676 7.397892 TTTATCTCTACTCTGTCTCAGTTGG 57.602 40.000 0.00 0.00 32.61 3.77
671 677 4.374689 TCTCTACTCTGTCTCAGTTGGT 57.625 45.455 0.00 0.00 32.61 3.67
672 678 4.730966 TCTCTACTCTGTCTCAGTTGGTT 58.269 43.478 0.00 0.00 32.61 3.67
673 679 5.877491 TCTCTACTCTGTCTCAGTTGGTTA 58.123 41.667 0.00 0.00 32.61 2.85
674 680 6.304624 TCTCTACTCTGTCTCAGTTGGTTAA 58.695 40.000 0.00 0.00 32.61 2.01
675 681 6.776116 TCTCTACTCTGTCTCAGTTGGTTAAA 59.224 38.462 0.00 0.00 32.61 1.52
676 682 7.451877 TCTCTACTCTGTCTCAGTTGGTTAAAT 59.548 37.037 0.00 0.00 32.61 1.40
677 683 8.645814 TCTACTCTGTCTCAGTTGGTTAAATA 57.354 34.615 0.00 0.00 32.61 1.40
678 684 8.740906 TCTACTCTGTCTCAGTTGGTTAAATAG 58.259 37.037 0.00 0.00 32.61 1.73
679 685 7.304497 ACTCTGTCTCAGTTGGTTAAATAGT 57.696 36.000 0.00 0.00 32.61 2.12
680 686 8.418597 ACTCTGTCTCAGTTGGTTAAATAGTA 57.581 34.615 0.00 0.00 32.61 1.82
681 687 8.305317 ACTCTGTCTCAGTTGGTTAAATAGTAC 58.695 37.037 0.00 0.00 32.61 2.73
682 688 7.310664 TCTGTCTCAGTTGGTTAAATAGTACG 58.689 38.462 0.00 0.00 32.61 3.67
683 689 6.392354 TGTCTCAGTTGGTTAAATAGTACGG 58.608 40.000 0.00 0.00 0.00 4.02
684 690 6.015180 TGTCTCAGTTGGTTAAATAGTACGGT 60.015 38.462 0.00 0.00 0.00 4.83
685 691 6.870439 GTCTCAGTTGGTTAAATAGTACGGTT 59.130 38.462 0.00 0.00 0.00 4.44
686 692 7.386025 GTCTCAGTTGGTTAAATAGTACGGTTT 59.614 37.037 4.38 4.38 0.00 3.27
687 693 8.584157 TCTCAGTTGGTTAAATAGTACGGTTTA 58.416 33.333 0.00 2.77 0.00 2.01
688 694 9.374838 CTCAGTTGGTTAAATAGTACGGTTTAT 57.625 33.333 6.58 0.00 0.00 1.40
689 695 9.723601 TCAGTTGGTTAAATAGTACGGTTTATT 57.276 29.630 6.58 0.00 0.00 1.40
694 700 9.213799 TGGTTAAATAGTACGGTTTATTTTCGT 57.786 29.630 12.51 0.00 40.40 3.85
695 701 9.689075 GGTTAAATAGTACGGTTTATTTTCGTC 57.311 33.333 12.51 5.22 38.19 4.20
698 704 8.761575 AAATAGTACGGTTTATTTTCGTCTCA 57.238 30.769 0.00 0.00 38.19 3.27
699 705 7.746526 ATAGTACGGTTTATTTTCGTCTCAC 57.253 36.000 0.00 0.00 38.19 3.51
700 706 4.925646 AGTACGGTTTATTTTCGTCTCACC 59.074 41.667 0.00 0.00 38.19 4.02
701 707 3.731089 ACGGTTTATTTTCGTCTCACCA 58.269 40.909 0.00 0.00 30.89 4.17
702 708 3.495753 ACGGTTTATTTTCGTCTCACCAC 59.504 43.478 0.00 0.00 30.89 4.16
703 709 3.744426 CGGTTTATTTTCGTCTCACCACT 59.256 43.478 0.00 0.00 0.00 4.00
704 710 4.212636 CGGTTTATTTTCGTCTCACCACTT 59.787 41.667 0.00 0.00 0.00 3.16
705 711 5.277634 CGGTTTATTTTCGTCTCACCACTTT 60.278 40.000 0.00 0.00 0.00 2.66
706 712 6.140786 GGTTTATTTTCGTCTCACCACTTTC 58.859 40.000 0.00 0.00 0.00 2.62
707 713 6.238538 GGTTTATTTTCGTCTCACCACTTTCA 60.239 38.462 0.00 0.00 0.00 2.69
708 714 6.928979 TTATTTTCGTCTCACCACTTTCAA 57.071 33.333 0.00 0.00 0.00 2.69
709 715 4.609691 TTTTCGTCTCACCACTTTCAAC 57.390 40.909 0.00 0.00 0.00 3.18
710 716 2.234300 TCGTCTCACCACTTTCAACC 57.766 50.000 0.00 0.00 0.00 3.77
711 717 0.859232 CGTCTCACCACTTTCAACCG 59.141 55.000 0.00 0.00 0.00 4.44
712 718 1.805120 CGTCTCACCACTTTCAACCGT 60.805 52.381 0.00 0.00 0.00 4.83
713 719 2.285977 GTCTCACCACTTTCAACCGTT 58.714 47.619 0.00 0.00 0.00 4.44
714 720 2.681344 GTCTCACCACTTTCAACCGTTT 59.319 45.455 0.00 0.00 0.00 3.60
715 721 3.128068 GTCTCACCACTTTCAACCGTTTT 59.872 43.478 0.00 0.00 0.00 2.43
716 722 3.759618 TCTCACCACTTTCAACCGTTTTT 59.240 39.130 0.00 0.00 0.00 1.94
747 753 2.833631 TTTTTCGTCCTCTCTCACCC 57.166 50.000 0.00 0.00 0.00 4.61
748 754 0.974383 TTTTCGTCCTCTCTCACCCC 59.026 55.000 0.00 0.00 0.00 4.95
749 755 0.903454 TTTCGTCCTCTCTCACCCCC 60.903 60.000 0.00 0.00 0.00 5.40
750 756 1.801302 TTCGTCCTCTCTCACCCCCT 61.801 60.000 0.00 0.00 0.00 4.79
751 757 1.755008 CGTCCTCTCTCACCCCCTC 60.755 68.421 0.00 0.00 0.00 4.30
752 758 1.700985 GTCCTCTCTCACCCCCTCT 59.299 63.158 0.00 0.00 0.00 3.69
753 759 0.396556 GTCCTCTCTCACCCCCTCTC 60.397 65.000 0.00 0.00 0.00 3.20
754 760 1.075600 CCTCTCTCACCCCCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
755 761 1.700368 CTCTCTCACCCCCTCTCCA 59.300 63.158 0.00 0.00 0.00 3.86
756 762 0.686112 CTCTCTCACCCCCTCTCCAC 60.686 65.000 0.00 0.00 0.00 4.02
757 763 1.687493 CTCTCACCCCCTCTCCACC 60.687 68.421 0.00 0.00 0.00 4.61
758 764 2.689034 CTCACCCCCTCTCCACCC 60.689 72.222 0.00 0.00 0.00 4.61
759 765 4.348495 TCACCCCCTCTCCACCCC 62.348 72.222 0.00 0.00 0.00 4.95
760 766 4.675303 CACCCCCTCTCCACCCCA 62.675 72.222 0.00 0.00 0.00 4.96
761 767 4.677151 ACCCCCTCTCCACCCCAC 62.677 72.222 0.00 0.00 0.00 4.61
763 769 4.715130 CCCCTCTCCACCCCACGA 62.715 72.222 0.00 0.00 0.00 4.35
764 770 2.606519 CCCTCTCCACCCCACGAA 60.607 66.667 0.00 0.00 0.00 3.85
765 771 2.660064 CCCTCTCCACCCCACGAAG 61.660 68.421 0.00 0.00 0.00 3.79
766 772 1.609501 CCTCTCCACCCCACGAAGA 60.610 63.158 0.00 0.00 0.00 2.87
767 773 1.608717 CCTCTCCACCCCACGAAGAG 61.609 65.000 0.00 0.00 34.55 2.85
768 774 1.608717 CTCTCCACCCCACGAAGAGG 61.609 65.000 0.00 0.00 38.25 3.69
769 775 3.316573 CTCCACCCCACGAAGAGGC 62.317 68.421 0.00 0.00 36.77 4.70
770 776 3.322466 CCACCCCACGAAGAGGCT 61.322 66.667 0.00 0.00 36.77 4.58
771 777 1.987855 CCACCCCACGAAGAGGCTA 60.988 63.158 0.00 0.00 36.77 3.93
772 778 1.218316 CACCCCACGAAGAGGCTAC 59.782 63.158 0.00 0.00 36.77 3.58
773 779 1.988406 ACCCCACGAAGAGGCTACC 60.988 63.158 0.00 0.00 36.77 3.18
774 780 2.732619 CCCCACGAAGAGGCTACCC 61.733 68.421 0.00 0.00 36.77 3.69
775 781 2.732619 CCCACGAAGAGGCTACCCC 61.733 68.421 0.00 0.00 36.77 4.95
783 789 2.041922 AGGCTACCCCTCGCATGA 60.042 61.111 0.00 0.00 41.21 3.07
784 790 1.689233 AGGCTACCCCTCGCATGAA 60.689 57.895 0.00 0.00 41.21 2.57
785 791 1.223487 GGCTACCCCTCGCATGAAA 59.777 57.895 0.00 0.00 0.00 2.69
786 792 1.095807 GGCTACCCCTCGCATGAAAC 61.096 60.000 0.00 0.00 0.00 2.78
787 793 1.429148 GCTACCCCTCGCATGAAACG 61.429 60.000 0.00 0.00 0.00 3.60
788 794 0.174845 CTACCCCTCGCATGAAACGA 59.825 55.000 0.00 0.00 38.02 3.85
789 795 0.609151 TACCCCTCGCATGAAACGAA 59.391 50.000 0.00 0.00 39.39 3.85
790 796 0.250553 ACCCCTCGCATGAAACGAAA 60.251 50.000 0.00 0.00 39.39 3.46
791 797 0.878416 CCCCTCGCATGAAACGAAAA 59.122 50.000 0.00 0.00 39.39 2.29
792 798 1.268352 CCCCTCGCATGAAACGAAAAA 59.732 47.619 0.00 0.00 39.39 1.94
817 823 4.882396 GCGAAGAGCCCTCTCGCC 62.882 72.222 20.93 10.53 43.52 5.54
818 824 4.214327 CGAAGAGCCCTCTCGCCC 62.214 72.222 0.00 0.00 44.02 6.13
819 825 4.214327 GAAGAGCCCTCTCGCCCG 62.214 72.222 0.00 0.00 44.02 6.13
821 827 3.657038 AAGAGCCCTCTCGCCCGTA 62.657 63.158 0.00 0.00 44.02 4.02
822 828 3.597728 GAGCCCTCTCGCCCGTAG 61.598 72.222 0.00 0.00 0.00 3.51
825 831 3.458163 CCCTCTCGCCCGTAGCAA 61.458 66.667 0.00 0.00 44.04 3.91
826 832 2.577059 CCTCTCGCCCGTAGCAAA 59.423 61.111 0.00 0.00 44.04 3.68
827 833 1.079405 CCTCTCGCCCGTAGCAAAA 60.079 57.895 0.00 0.00 44.04 2.44
828 834 0.672401 CCTCTCGCCCGTAGCAAAAA 60.672 55.000 0.00 0.00 44.04 1.94
847 853 4.519540 AAAATAATCAGGCAACAACGCT 57.480 36.364 0.00 0.00 41.41 5.07
848 854 3.764885 AATAATCAGGCAACAACGCTC 57.235 42.857 0.00 0.00 41.41 5.03
849 855 1.448985 TAATCAGGCAACAACGCTCC 58.551 50.000 0.00 0.00 41.41 4.70
850 856 1.244019 AATCAGGCAACAACGCTCCC 61.244 55.000 0.00 0.00 41.41 4.30
851 857 2.410322 ATCAGGCAACAACGCTCCCA 62.410 55.000 0.00 0.00 41.41 4.37
852 858 1.973281 CAGGCAACAACGCTCCCAT 60.973 57.895 0.00 0.00 41.41 4.00
853 859 1.675641 AGGCAACAACGCTCCCATC 60.676 57.895 0.00 0.00 41.41 3.51
854 860 2.480555 GCAACAACGCTCCCATCG 59.519 61.111 0.00 0.00 0.00 3.84
855 861 2.032634 GCAACAACGCTCCCATCGA 61.033 57.895 0.00 0.00 0.00 3.59
856 862 1.369091 GCAACAACGCTCCCATCGAT 61.369 55.000 0.00 0.00 0.00 3.59
897 903 2.310233 CCGCCAATCCGCTCGTATG 61.310 63.158 0.00 0.00 0.00 2.39
898 904 2.939022 GCCAATCCGCTCGTATGC 59.061 61.111 0.00 0.00 0.00 3.14
899 905 2.607892 GCCAATCCGCTCGTATGCC 61.608 63.158 0.00 0.00 0.00 4.40
921 927 2.029073 CCGCCAATCCGCTCGTAT 59.971 61.111 0.00 0.00 0.00 3.06
924 930 2.607892 GCCAATCCGCTCGTATGCC 61.608 63.158 0.00 0.00 0.00 4.40
926 932 1.591594 CAATCCGCTCGTATGCCGT 60.592 57.895 0.00 0.00 37.94 5.68
945 951 4.115199 GCCGCCATTCACCCCTCT 62.115 66.667 0.00 0.00 0.00 3.69
977 983 1.221566 CATCACCCATCGCCACTGA 59.778 57.895 0.00 0.00 0.00 3.41
1111 1150 1.811266 CCGCCATCGAAGTCAGGTG 60.811 63.158 0.00 0.00 38.10 4.00
1152 3145 4.954118 TGGTCGCCAGTCCCCACT 62.954 66.667 0.00 0.00 0.00 4.00
1276 7046 0.704664 ATCCCAACTTCCCAAGTCCC 59.295 55.000 0.00 0.00 41.91 4.46
1350 7121 5.075858 TCCAATGAATGTGCAAGGAATTC 57.924 39.130 0.00 0.00 0.00 2.17
1570 7342 3.168292 TCAGAGAAGAACATGAGCCTGA 58.832 45.455 0.00 0.00 0.00 3.86
1601 7373 3.349927 CATCTGTCCAAGCATGAGGAAA 58.650 45.455 0.00 0.00 35.29 3.13
1616 7390 6.349611 GCATGAGGAAATTTGCTAGTCTTTGA 60.350 38.462 12.63 0.00 32.41 2.69
1701 7475 4.036852 AGGAAGTTTGCTACAGTCTTTTGC 59.963 41.667 0.00 0.00 0.00 3.68
1721 7495 0.319641 GGACAGGTTGACGACAGGAC 60.320 60.000 0.00 0.00 0.00 3.85
1964 7738 4.059511 TGTGGTTCTGGTATTTGTACGTG 58.940 43.478 0.00 0.00 0.00 4.49
1967 7741 5.007921 GTGGTTCTGGTATTTGTACGTGTTT 59.992 40.000 0.00 0.00 0.00 2.83
2085 7860 4.520111 TGTCTGTATCATTAATGCCATGGC 59.480 41.667 30.54 30.54 42.35 4.40
2089 7864 5.387788 TGTATCATTAATGCCATGGCTCTT 58.612 37.500 35.53 28.35 42.51 2.85
2108 7883 6.476053 GGCTCTTTTACTTATAGTTGTCCTCG 59.524 42.308 0.00 0.00 0.00 4.63
2172 7947 2.164219 CCATGGCAATGAAGTGTACACC 59.836 50.000 22.28 8.77 35.67 4.16
2197 7972 1.275291 ACAGCTAAGCGTACACCATGT 59.725 47.619 0.00 0.00 0.00 3.21
2205 7980 7.334921 AGCTAAGCGTACACCATGTTAATAAAA 59.665 33.333 0.00 0.00 0.00 1.52
2254 8029 4.338118 GTGTTGGTTCTGATGGTTTGAGAA 59.662 41.667 0.00 0.00 0.00 2.87
2270 8045 6.642540 GGTTTGAGAAAAATTAAGTGAGCCAG 59.357 38.462 0.00 0.00 0.00 4.85
2281 8056 9.908152 AAATTAAGTGAGCCAGTATAAACAAAC 57.092 29.630 0.00 0.00 0.00 2.93
2313 8088 4.100707 TCAATTCAGTTATGCAAGCTGC 57.899 40.909 9.71 0.00 45.29 5.25
2352 8132 5.946942 ACTCTGATCTTCTAATGCTTCCA 57.053 39.130 0.00 0.00 0.00 3.53
2356 8140 6.344500 TCTGATCTTCTAATGCTTCCACTTC 58.656 40.000 0.00 0.00 0.00 3.01
2359 8143 7.170965 TGATCTTCTAATGCTTCCACTTCTTT 58.829 34.615 0.00 0.00 0.00 2.52
2644 8429 3.881688 CGGTTAGAGGCTAGCAGTACTTA 59.118 47.826 18.24 1.05 0.00 2.24
2795 8584 4.321452 GGAGGTAACAGTGACGTGTCATAA 60.321 45.833 5.91 0.00 40.04 1.90
2811 8600 4.947388 TGTCATAAGTTTTGGGATACAGGC 59.053 41.667 0.00 0.00 39.74 4.85
2897 8686 3.119291 CGTGTCTGTATTGATGGAGCTC 58.881 50.000 4.71 4.71 0.00 4.09
2962 8751 8.621532 TCTTGTCCTATAATTCCATGTTATGC 57.378 34.615 0.00 0.00 0.00 3.14
3001 8790 8.907222 AAGTTTCCATGAATTTTGCTTTACAT 57.093 26.923 0.00 0.00 0.00 2.29
3375 9220 0.464735 AAGCGCACAACCAGTTACCA 60.465 50.000 11.47 0.00 0.00 3.25
3433 9278 9.237187 TGCATGTTTCTCCATGTTTTAAGTATA 57.763 29.630 0.00 0.00 43.33 1.47
3515 9391 6.528537 TGGCTTGTATATGCAATGTTTTCT 57.471 33.333 6.70 0.00 0.00 2.52
3516 9392 7.637631 TGGCTTGTATATGCAATGTTTTCTA 57.362 32.000 6.70 0.00 0.00 2.10
3517 9393 7.479980 TGGCTTGTATATGCAATGTTTTCTAC 58.520 34.615 6.70 0.00 0.00 2.59
3518 9394 7.339212 TGGCTTGTATATGCAATGTTTTCTACT 59.661 33.333 6.70 0.00 0.00 2.57
3519 9395 7.857885 GGCTTGTATATGCAATGTTTTCTACTC 59.142 37.037 6.70 0.00 0.00 2.59
3520 9396 7.857885 GCTTGTATATGCAATGTTTTCTACTCC 59.142 37.037 6.70 0.00 0.00 3.85
3521 9397 7.801716 TGTATATGCAATGTTTTCTACTCCC 57.198 36.000 0.00 0.00 0.00 4.30
3522 9398 7.573710 TGTATATGCAATGTTTTCTACTCCCT 58.426 34.615 0.00 0.00 0.00 4.20
3523 9399 7.715249 TGTATATGCAATGTTTTCTACTCCCTC 59.285 37.037 0.00 0.00 0.00 4.30
3524 9400 3.686016 TGCAATGTTTTCTACTCCCTCC 58.314 45.455 0.00 0.00 0.00 4.30
3525 9401 2.678336 GCAATGTTTTCTACTCCCTCCG 59.322 50.000 0.00 0.00 0.00 4.63
3526 9402 3.868754 GCAATGTTTTCTACTCCCTCCGT 60.869 47.826 0.00 0.00 0.00 4.69
3527 9403 4.324267 CAATGTTTTCTACTCCCTCCGTT 58.676 43.478 0.00 0.00 0.00 4.44
3528 9404 3.672767 TGTTTTCTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
3529 9405 2.301009 TGTTTTCTACTCCCTCCGTTCC 59.699 50.000 0.00 0.00 0.00 3.62
3530 9406 1.565067 TTTCTACTCCCTCCGTTCCC 58.435 55.000 0.00 0.00 0.00 3.97
3531 9407 0.410663 TTCTACTCCCTCCGTTCCCA 59.589 55.000 0.00 0.00 0.00 4.37
3532 9408 0.410663 TCTACTCCCTCCGTTCCCAA 59.589 55.000 0.00 0.00 0.00 4.12
3533 9409 1.203212 TCTACTCCCTCCGTTCCCAAA 60.203 52.381 0.00 0.00 0.00 3.28
3534 9410 1.838077 CTACTCCCTCCGTTCCCAAAT 59.162 52.381 0.00 0.00 0.00 2.32
3535 9411 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3536 9412 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
3537 9413 2.850568 ACTCCCTCCGTTCCCAAATATT 59.149 45.455 0.00 0.00 0.00 1.28
3538 9414 3.268595 ACTCCCTCCGTTCCCAAATATTT 59.731 43.478 0.00 0.00 0.00 1.40
3539 9415 3.626930 TCCCTCCGTTCCCAAATATTTG 58.373 45.455 19.40 19.40 37.90 2.32
3540 9416 3.010808 TCCCTCCGTTCCCAAATATTTGT 59.989 43.478 23.24 0.00 36.45 2.83
3541 9417 3.380320 CCCTCCGTTCCCAAATATTTGTC 59.620 47.826 23.24 11.68 36.45 3.18
3542 9418 4.270008 CCTCCGTTCCCAAATATTTGTCT 58.730 43.478 23.24 0.00 36.45 3.41
3543 9419 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
3544 9420 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
3545 9421 6.295067 CCTCCGTTCCCAAATATTTGTCTTTT 60.295 38.462 23.24 0.00 36.45 2.27
3546 9422 7.056844 TCCGTTCCCAAATATTTGTCTTTTT 57.943 32.000 23.24 0.00 36.45 1.94
3547 9423 8.179509 TCCGTTCCCAAATATTTGTCTTTTTA 57.820 30.769 23.24 5.03 36.45 1.52
3548 9424 8.301002 TCCGTTCCCAAATATTTGTCTTTTTAG 58.699 33.333 23.24 8.23 36.45 1.85
3549 9425 8.301002 CCGTTCCCAAATATTTGTCTTTTTAGA 58.699 33.333 23.24 7.17 36.45 2.10
3550 9426 9.341899 CGTTCCCAAATATTTGTCTTTTTAGAG 57.658 33.333 23.24 7.00 36.45 2.43
3570 9446 9.567776 TTTAGAGATTTCAAATGAACTACCACA 57.432 29.630 0.00 0.00 33.13 4.17
3571 9447 9.739276 TTAGAGATTTCAAATGAACTACCACAT 57.261 29.630 0.00 0.00 33.13 3.21
3573 9449 9.167311 AGAGATTTCAAATGAACTACCACATAC 57.833 33.333 0.00 0.00 33.13 2.39
3574 9450 7.974675 AGATTTCAAATGAACTACCACATACG 58.025 34.615 0.00 0.00 33.13 3.06
3575 9451 7.822334 AGATTTCAAATGAACTACCACATACGA 59.178 33.333 0.00 0.00 33.13 3.43
3576 9452 7.731882 TTTCAAATGAACTACCACATACGAA 57.268 32.000 0.00 0.00 33.13 3.85
3577 9453 7.915293 TTCAAATGAACTACCACATACGAAT 57.085 32.000 0.00 0.00 0.00 3.34
3578 9454 7.302350 TCAAATGAACTACCACATACGAATG 57.698 36.000 0.00 0.00 39.17 2.67
3580 9456 8.035984 TCAAATGAACTACCACATACGAATGTA 58.964 33.333 0.00 0.00 44.70 2.29
3581 9457 8.826710 CAAATGAACTACCACATACGAATGTAT 58.173 33.333 0.00 0.00 44.70 2.29
3588 9464 9.511272 ACTACCACATACGAATGTATATAGACA 57.489 33.333 2.07 2.07 44.70 3.41
3620 9496 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3621 9497 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3622 9498 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3623 9499 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3624 9500 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3625 9501 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3626 9502 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3627 9503 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3628 9504 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3629 9505 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3630 9506 3.871594 ACTCATTTTGCTCCGTATGTAGC 59.128 43.478 0.00 0.00 39.25 3.58
3631 9507 3.202906 TCATTTTGCTCCGTATGTAGCC 58.797 45.455 0.00 0.00 37.97 3.93
3632 9508 2.772077 TTTTGCTCCGTATGTAGCCA 57.228 45.000 0.00 0.00 37.97 4.75
3633 9509 2.018542 TTTGCTCCGTATGTAGCCAC 57.981 50.000 0.00 0.00 37.97 5.01
3634 9510 1.191535 TTGCTCCGTATGTAGCCACT 58.808 50.000 0.00 0.00 37.97 4.00
3635 9511 1.191535 TGCTCCGTATGTAGCCACTT 58.808 50.000 0.00 0.00 37.97 3.16
3636 9512 1.134818 TGCTCCGTATGTAGCCACTTG 60.135 52.381 0.00 0.00 37.97 3.16
3637 9513 1.134788 GCTCCGTATGTAGCCACTTGT 60.135 52.381 0.00 0.00 32.40 3.16
3638 9514 2.677037 GCTCCGTATGTAGCCACTTGTT 60.677 50.000 0.00 0.00 32.40 2.83
3639 9515 2.930040 CTCCGTATGTAGCCACTTGTTG 59.070 50.000 0.00 0.00 0.00 3.33
3640 9516 1.396996 CCGTATGTAGCCACTTGTTGC 59.603 52.381 0.00 0.00 0.00 4.17
3641 9517 2.073056 CGTATGTAGCCACTTGTTGCA 58.927 47.619 0.00 0.00 0.00 4.08
3642 9518 2.482336 CGTATGTAGCCACTTGTTGCAA 59.518 45.455 0.00 0.00 0.00 4.08
3643 9519 3.126858 CGTATGTAGCCACTTGTTGCAAT 59.873 43.478 0.59 0.00 0.00 3.56
3644 9520 3.855689 ATGTAGCCACTTGTTGCAATC 57.144 42.857 0.59 0.00 0.00 2.67
3645 9521 2.862541 TGTAGCCACTTGTTGCAATCT 58.137 42.857 0.59 0.00 0.00 2.40
3646 9522 2.813754 TGTAGCCACTTGTTGCAATCTC 59.186 45.455 0.59 0.00 0.00 2.75
3647 9523 2.283145 AGCCACTTGTTGCAATCTCT 57.717 45.000 0.59 0.00 0.00 3.10
3648 9524 3.423539 AGCCACTTGTTGCAATCTCTA 57.576 42.857 0.59 0.00 0.00 2.43
3649 9525 3.341823 AGCCACTTGTTGCAATCTCTAG 58.658 45.455 0.59 0.00 0.00 2.43
3650 9526 3.008375 AGCCACTTGTTGCAATCTCTAGA 59.992 43.478 0.59 0.00 0.00 2.43
3651 9527 3.753272 GCCACTTGTTGCAATCTCTAGAA 59.247 43.478 0.59 0.00 0.00 2.10
3652 9528 4.216257 GCCACTTGTTGCAATCTCTAGAAA 59.784 41.667 0.59 0.00 0.00 2.52
3653 9529 5.618640 GCCACTTGTTGCAATCTCTAGAAAG 60.619 44.000 0.59 0.19 0.00 2.62
3654 9530 5.702670 CCACTTGTTGCAATCTCTAGAAAGA 59.297 40.000 0.59 0.00 0.00 2.52
3655 9531 6.348050 CCACTTGTTGCAATCTCTAGAAAGAC 60.348 42.308 0.59 0.00 0.00 3.01
3656 9532 6.203530 CACTTGTTGCAATCTCTAGAAAGACA 59.796 38.462 0.59 0.00 0.00 3.41
3657 9533 6.767902 ACTTGTTGCAATCTCTAGAAAGACAA 59.232 34.615 0.59 0.00 0.00 3.18
3658 9534 7.283127 ACTTGTTGCAATCTCTAGAAAGACAAA 59.717 33.333 0.59 0.00 0.00 2.83
3659 9535 7.750229 TGTTGCAATCTCTAGAAAGACAAAT 57.250 32.000 0.59 0.00 0.00 2.32
3660 9536 8.846943 TGTTGCAATCTCTAGAAAGACAAATA 57.153 30.769 0.59 0.00 0.00 1.40
3661 9537 9.453572 TGTTGCAATCTCTAGAAAGACAAATAT 57.546 29.630 0.59 0.00 0.00 1.28
3671 9547 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3672 9548 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3673 9549 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3674 9550 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3675 9551 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
3676 9552 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
3677 9553 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
3740 9616 7.209471 ACAGACAATTAAACCGCTCAATTAA 57.791 32.000 0.00 0.00 0.00 1.40
3752 9628 5.204833 CCGCTCAATTAATAATTCACCACG 58.795 41.667 0.00 0.00 0.00 4.94
3864 9740 6.846350 ACTAATTTGTACAGAGATTGCAAGC 58.154 36.000 6.58 6.58 0.00 4.01
3974 9853 1.765314 GGACTAGATGGCAGTGTGGAT 59.235 52.381 0.00 0.00 0.00 3.41
3990 9869 4.754618 GTGTGGATGTTGTGTATGACAAGA 59.245 41.667 0.00 0.00 45.46 3.02
4093 9972 1.363443 CAAGGGCGTGCACAACATT 59.637 52.632 18.64 9.71 0.00 2.71
4095 9974 0.881118 AAGGGCGTGCACAACATTAG 59.119 50.000 18.64 0.00 0.00 1.73
4112 9991 6.309712 ACATTAGAGCCGATGAAATTCATG 57.690 37.500 13.82 5.91 37.20 3.07
4232 10113 9.672673 ATCTGCTATCAACACAACTACTTATTT 57.327 29.630 0.00 0.00 0.00 1.40
4313 10202 2.353803 CGGAGGTACCTTTGGAGTTCAG 60.354 54.545 17.53 0.00 36.31 3.02
4342 10231 5.243507 TCCATTACATGCTTTGTGTGTTGAT 59.756 36.000 0.00 0.00 39.48 2.57
4351 10240 1.735926 TGTGTGTTGATAGGGGTCCA 58.264 50.000 0.00 0.00 0.00 4.02
4400 10289 1.306825 ATGGAGGCAGCTGAGACCT 60.307 57.895 20.43 14.97 36.19 3.85
4443 10332 4.227134 CCACCTCGCCATCTCGGG 62.227 72.222 0.00 0.00 34.06 5.14
4594 10489 1.025041 GCAACTCCCAATTCCGATCC 58.975 55.000 0.00 0.00 0.00 3.36
4597 10492 0.909623 ACTCCCAATTCCGATCCGTT 59.090 50.000 0.00 0.00 0.00 4.44
4599 10494 1.139058 CTCCCAATTCCGATCCGTTCT 59.861 52.381 0.00 0.00 0.00 3.01
4776 10677 3.560902 TGTTTGTTTGTTGCGACAGAA 57.439 38.095 6.92 2.54 37.04 3.02
4874 10775 5.387113 TGAATACATAGCATGGGTTCCTT 57.613 39.130 0.00 0.00 31.16 3.36
4892 10793 2.288395 CCTTGTGTTGGAGGCATTTGAC 60.288 50.000 0.00 0.00 0.00 3.18
5029 10930 4.082125 AGGCATACTTTGTTCTTGGAAGG 58.918 43.478 0.00 0.00 0.00 3.46
5046 10947 9.303116 TCTTGGAAGGCATAGTTTGTTATTAAA 57.697 29.630 0.00 0.00 0.00 1.52
5166 11067 7.505585 CCTATTAAAATATCCCCTTGCACTGAA 59.494 37.037 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 4.447138 TCCCACTTGTCTACCAATTTGT 57.553 40.909 0.00 0.00 31.20 2.83
128 129 7.122055 TGTGAGGTAAGTTGTTGTCTTTTTCAT 59.878 33.333 0.00 0.00 0.00 2.57
137 139 3.118884 ACGACTGTGAGGTAAGTTGTTGT 60.119 43.478 0.00 0.00 37.70 3.32
194 196 3.986996 TGATGATGATGGTGTGTCTGT 57.013 42.857 0.00 0.00 0.00 3.41
212 214 7.460071 AGTACTCCTACAGAAGACTAAGTTGA 58.540 38.462 0.00 0.00 0.00 3.18
460 465 4.946772 AGCAATTAAGAAAGGAAGCCTCTC 59.053 41.667 0.00 0.00 30.89 3.20
509 514 2.094675 CAAGGCCTTCCATCGTTCATT 58.905 47.619 17.29 0.00 33.74 2.57
518 523 3.806949 ATTTACAGACAAGGCCTTCCA 57.193 42.857 17.29 0.00 33.74 3.53
534 539 2.782922 TGCACCCCCTCTCCATATTTA 58.217 47.619 0.00 0.00 0.00 1.40
539 544 0.327480 TACATGCACCCCCTCTCCAT 60.327 55.000 0.00 0.00 0.00 3.41
591 596 5.680619 TCTTGCAATATAGACCGTCCAATT 58.319 37.500 0.00 0.00 0.00 2.32
594 599 4.503123 CCATCTTGCAATATAGACCGTCCA 60.503 45.833 0.00 0.00 0.00 4.02
651 657 6.576662 TTAACCAACTGAGACAGAGTAGAG 57.423 41.667 5.76 0.00 35.18 2.43
652 658 6.971726 TTTAACCAACTGAGACAGAGTAGA 57.028 37.500 5.76 0.00 35.18 2.59
653 659 8.524487 ACTATTTAACCAACTGAGACAGAGTAG 58.476 37.037 5.76 0.00 35.18 2.57
654 660 8.418597 ACTATTTAACCAACTGAGACAGAGTA 57.581 34.615 5.76 0.00 35.18 2.59
655 661 7.304497 ACTATTTAACCAACTGAGACAGAGT 57.696 36.000 5.76 0.00 35.18 3.24
656 662 7.485277 CGTACTATTTAACCAACTGAGACAGAG 59.515 40.741 5.76 0.00 35.18 3.35
657 663 7.310664 CGTACTATTTAACCAACTGAGACAGA 58.689 38.462 5.76 0.00 35.18 3.41
658 664 6.530534 CCGTACTATTTAACCAACTGAGACAG 59.469 42.308 0.00 0.00 37.52 3.51
659 665 6.015180 ACCGTACTATTTAACCAACTGAGACA 60.015 38.462 0.00 0.00 0.00 3.41
660 666 6.393171 ACCGTACTATTTAACCAACTGAGAC 58.607 40.000 0.00 0.00 0.00 3.36
661 667 6.594788 ACCGTACTATTTAACCAACTGAGA 57.405 37.500 0.00 0.00 0.00 3.27
662 668 7.662604 AAACCGTACTATTTAACCAACTGAG 57.337 36.000 0.00 0.00 0.00 3.35
663 669 9.723601 AATAAACCGTACTATTTAACCAACTGA 57.276 29.630 3.41 0.00 0.00 3.41
668 674 9.213799 ACGAAAATAAACCGTACTATTTAACCA 57.786 29.630 0.00 0.00 34.52 3.67
669 675 9.689075 GACGAAAATAAACCGTACTATTTAACC 57.311 33.333 0.00 0.00 36.60 2.85
672 678 9.853555 TGAGACGAAAATAAACCGTACTATTTA 57.146 29.630 0.00 0.00 36.60 1.40
673 679 8.650714 GTGAGACGAAAATAAACCGTACTATTT 58.349 33.333 0.00 0.00 36.60 1.40
674 680 7.276438 GGTGAGACGAAAATAAACCGTACTATT 59.724 37.037 0.00 0.00 36.60 1.73
675 681 6.753744 GGTGAGACGAAAATAAACCGTACTAT 59.246 38.462 0.00 0.00 36.60 2.12
676 682 6.092748 GGTGAGACGAAAATAAACCGTACTA 58.907 40.000 0.00 0.00 36.60 1.82
677 683 4.925646 GGTGAGACGAAAATAAACCGTACT 59.074 41.667 0.00 0.00 36.60 2.73
678 684 4.685628 TGGTGAGACGAAAATAAACCGTAC 59.314 41.667 0.00 0.00 36.60 3.67
679 685 4.685628 GTGGTGAGACGAAAATAAACCGTA 59.314 41.667 0.00 0.00 36.60 4.02
680 686 3.495753 GTGGTGAGACGAAAATAAACCGT 59.504 43.478 0.00 0.00 39.41 4.83
681 687 3.744426 AGTGGTGAGACGAAAATAAACCG 59.256 43.478 0.00 0.00 0.00 4.44
682 688 5.684550 AAGTGGTGAGACGAAAATAAACC 57.315 39.130 0.00 0.00 0.00 3.27
683 689 6.721321 TGAAAGTGGTGAGACGAAAATAAAC 58.279 36.000 0.00 0.00 0.00 2.01
684 690 6.928979 TGAAAGTGGTGAGACGAAAATAAA 57.071 33.333 0.00 0.00 0.00 1.40
685 691 6.238538 GGTTGAAAGTGGTGAGACGAAAATAA 60.239 38.462 0.00 0.00 0.00 1.40
686 692 5.237779 GGTTGAAAGTGGTGAGACGAAAATA 59.762 40.000 0.00 0.00 0.00 1.40
687 693 4.036380 GGTTGAAAGTGGTGAGACGAAAAT 59.964 41.667 0.00 0.00 0.00 1.82
688 694 3.375922 GGTTGAAAGTGGTGAGACGAAAA 59.624 43.478 0.00 0.00 0.00 2.29
689 695 2.940410 GGTTGAAAGTGGTGAGACGAAA 59.060 45.455 0.00 0.00 0.00 3.46
690 696 2.557317 GGTTGAAAGTGGTGAGACGAA 58.443 47.619 0.00 0.00 0.00 3.85
691 697 1.537348 CGGTTGAAAGTGGTGAGACGA 60.537 52.381 0.00 0.00 0.00 4.20
692 698 0.859232 CGGTTGAAAGTGGTGAGACG 59.141 55.000 0.00 0.00 0.00 4.18
693 699 1.949465 ACGGTTGAAAGTGGTGAGAC 58.051 50.000 0.00 0.00 0.00 3.36
694 700 2.702592 AACGGTTGAAAGTGGTGAGA 57.297 45.000 0.00 0.00 0.00 3.27
695 701 3.775661 AAAACGGTTGAAAGTGGTGAG 57.224 42.857 0.00 0.00 0.00 3.51
728 734 1.346722 GGGGTGAGAGAGGACGAAAAA 59.653 52.381 0.00 0.00 0.00 1.94
729 735 0.974383 GGGGTGAGAGAGGACGAAAA 59.026 55.000 0.00 0.00 0.00 2.29
730 736 0.903454 GGGGGTGAGAGAGGACGAAA 60.903 60.000 0.00 0.00 0.00 3.46
731 737 1.305046 GGGGGTGAGAGAGGACGAA 60.305 63.158 0.00 0.00 0.00 3.85
732 738 2.212794 GAGGGGGTGAGAGAGGACGA 62.213 65.000 0.00 0.00 0.00 4.20
733 739 1.755008 GAGGGGGTGAGAGAGGACG 60.755 68.421 0.00 0.00 0.00 4.79
734 740 0.396556 GAGAGGGGGTGAGAGAGGAC 60.397 65.000 0.00 0.00 0.00 3.85
735 741 1.585651 GGAGAGGGGGTGAGAGAGGA 61.586 65.000 0.00 0.00 0.00 3.71
736 742 1.075600 GGAGAGGGGGTGAGAGAGG 60.076 68.421 0.00 0.00 0.00 3.69
737 743 0.686112 GTGGAGAGGGGGTGAGAGAG 60.686 65.000 0.00 0.00 0.00 3.20
738 744 1.388531 GTGGAGAGGGGGTGAGAGA 59.611 63.158 0.00 0.00 0.00 3.10
739 745 1.687493 GGTGGAGAGGGGGTGAGAG 60.687 68.421 0.00 0.00 0.00 3.20
740 746 2.450243 GGTGGAGAGGGGGTGAGA 59.550 66.667 0.00 0.00 0.00 3.27
741 747 2.689034 GGGTGGAGAGGGGGTGAG 60.689 72.222 0.00 0.00 0.00 3.51
742 748 4.348495 GGGGTGGAGAGGGGGTGA 62.348 72.222 0.00 0.00 0.00 4.02
743 749 4.675303 TGGGGTGGAGAGGGGGTG 62.675 72.222 0.00 0.00 0.00 4.61
744 750 4.677151 GTGGGGTGGAGAGGGGGT 62.677 72.222 0.00 0.00 0.00 4.95
746 752 4.715130 TCGTGGGGTGGAGAGGGG 62.715 72.222 0.00 0.00 0.00 4.79
747 753 2.606519 TTCGTGGGGTGGAGAGGG 60.607 66.667 0.00 0.00 0.00 4.30
748 754 1.608717 CTCTTCGTGGGGTGGAGAGG 61.609 65.000 0.00 0.00 0.00 3.69
749 755 1.608717 CCTCTTCGTGGGGTGGAGAG 61.609 65.000 0.00 0.00 0.00 3.20
750 756 1.609501 CCTCTTCGTGGGGTGGAGA 60.610 63.158 0.00 0.00 0.00 3.71
751 757 2.982130 CCTCTTCGTGGGGTGGAG 59.018 66.667 0.00 0.00 0.00 3.86
752 758 2.449967 TAGCCTCTTCGTGGGGTGGA 62.450 60.000 0.00 0.00 34.91 4.02
753 759 1.987855 TAGCCTCTTCGTGGGGTGG 60.988 63.158 0.00 0.00 34.91 4.61
754 760 1.218316 GTAGCCTCTTCGTGGGGTG 59.782 63.158 0.00 0.00 34.91 4.61
755 761 1.988406 GGTAGCCTCTTCGTGGGGT 60.988 63.158 0.00 0.00 37.15 4.95
756 762 2.732619 GGGTAGCCTCTTCGTGGGG 61.733 68.421 2.95 0.00 0.00 4.96
757 763 2.732619 GGGGTAGCCTCTTCGTGGG 61.733 68.421 11.48 0.00 0.00 4.61
758 764 1.677637 GAGGGGTAGCCTCTTCGTGG 61.678 65.000 11.48 0.00 32.38 4.94
759 765 1.817209 GAGGGGTAGCCTCTTCGTG 59.183 63.158 11.48 0.00 32.38 4.35
760 766 1.753463 CGAGGGGTAGCCTCTTCGT 60.753 63.158 11.48 0.00 32.38 3.85
761 767 3.121019 CGAGGGGTAGCCTCTTCG 58.879 66.667 11.48 13.63 32.38 3.79
762 768 1.403687 ATGCGAGGGGTAGCCTCTTC 61.404 60.000 11.48 5.83 32.38 2.87
763 769 1.383248 ATGCGAGGGGTAGCCTCTT 60.383 57.895 11.48 0.00 32.38 2.85
764 770 2.136878 CATGCGAGGGGTAGCCTCT 61.137 63.158 11.48 6.29 36.82 3.69
765 771 1.686325 TTCATGCGAGGGGTAGCCTC 61.686 60.000 11.48 5.69 0.00 4.70
766 772 1.271840 TTTCATGCGAGGGGTAGCCT 61.272 55.000 11.48 0.00 0.00 4.58
767 773 1.095807 GTTTCATGCGAGGGGTAGCC 61.096 60.000 1.07 1.07 0.00 3.93
768 774 1.429148 CGTTTCATGCGAGGGGTAGC 61.429 60.000 0.00 0.00 0.00 3.58
769 775 0.174845 TCGTTTCATGCGAGGGGTAG 59.825 55.000 0.00 0.00 34.11 3.18
770 776 0.609151 TTCGTTTCATGCGAGGGGTA 59.391 50.000 0.00 0.00 39.61 3.69
771 777 0.250553 TTTCGTTTCATGCGAGGGGT 60.251 50.000 0.00 0.00 39.61 4.95
772 778 0.878416 TTTTCGTTTCATGCGAGGGG 59.122 50.000 0.00 0.00 39.61 4.79
773 779 2.697431 TTTTTCGTTTCATGCGAGGG 57.303 45.000 0.00 0.00 39.61 4.30
800 806 4.882396 GGCGAGAGGGCTCTTCGC 62.882 72.222 25.40 25.40 45.88 4.70
801 807 4.214327 GGGCGAGAGGGCTCTTCG 62.214 72.222 12.13 12.13 40.61 3.79
802 808 4.214327 CGGGCGAGAGGGCTCTTC 62.214 72.222 0.00 0.00 40.61 2.87
803 809 3.657038 TACGGGCGAGAGGGCTCTT 62.657 63.158 0.00 0.00 40.61 2.85
804 810 4.124943 TACGGGCGAGAGGGCTCT 62.125 66.667 0.00 0.00 43.78 4.09
805 811 3.597728 CTACGGGCGAGAGGGCTC 61.598 72.222 0.00 0.00 41.87 4.70
808 814 2.515996 TTTTGCTACGGGCGAGAGGG 62.516 60.000 0.00 0.00 45.43 4.30
809 815 0.672401 TTTTTGCTACGGGCGAGAGG 60.672 55.000 0.00 0.00 45.43 3.69
810 816 2.835605 TTTTTGCTACGGGCGAGAG 58.164 52.632 0.00 0.00 45.43 3.20
825 831 4.881920 AGCGTTGTTGCCTGATTATTTTT 58.118 34.783 0.00 0.00 34.65 1.94
826 832 4.485163 GAGCGTTGTTGCCTGATTATTTT 58.515 39.130 0.00 0.00 34.65 1.82
827 833 3.119495 GGAGCGTTGTTGCCTGATTATTT 60.119 43.478 0.00 0.00 34.65 1.40
828 834 2.423538 GGAGCGTTGTTGCCTGATTATT 59.576 45.455 0.00 0.00 34.65 1.40
829 835 2.017049 GGAGCGTTGTTGCCTGATTAT 58.983 47.619 0.00 0.00 34.65 1.28
830 836 1.448985 GGAGCGTTGTTGCCTGATTA 58.551 50.000 0.00 0.00 34.65 1.75
831 837 1.244019 GGGAGCGTTGTTGCCTGATT 61.244 55.000 0.00 0.00 34.65 2.57
832 838 1.675641 GGGAGCGTTGTTGCCTGAT 60.676 57.895 0.00 0.00 34.65 2.90
833 839 2.281484 GGGAGCGTTGTTGCCTGA 60.281 61.111 0.00 0.00 34.65 3.86
834 840 1.926511 GATGGGAGCGTTGTTGCCTG 61.927 60.000 0.00 0.00 34.65 4.85
835 841 1.675641 GATGGGAGCGTTGTTGCCT 60.676 57.895 0.00 0.00 34.65 4.75
836 842 2.877691 GATGGGAGCGTTGTTGCC 59.122 61.111 0.00 0.00 34.65 4.52
837 843 1.369091 ATCGATGGGAGCGTTGTTGC 61.369 55.000 0.00 0.00 0.00 4.17
838 844 0.652592 GATCGATGGGAGCGTTGTTG 59.347 55.000 0.54 0.00 0.00 3.33
839 845 0.537188 AGATCGATGGGAGCGTTGTT 59.463 50.000 0.54 0.00 35.79 2.83
840 846 1.338337 CTAGATCGATGGGAGCGTTGT 59.662 52.381 0.54 0.00 35.79 3.32
841 847 1.336332 CCTAGATCGATGGGAGCGTTG 60.336 57.143 0.54 0.00 35.79 4.10
842 848 0.962489 CCTAGATCGATGGGAGCGTT 59.038 55.000 0.54 0.00 35.79 4.84
843 849 0.178987 ACCTAGATCGATGGGAGCGT 60.179 55.000 0.54 0.00 35.79 5.07
844 850 0.523966 GACCTAGATCGATGGGAGCG 59.476 60.000 0.54 0.00 35.79 5.03
845 851 1.271102 GTGACCTAGATCGATGGGAGC 59.729 57.143 0.54 1.72 0.00 4.70
846 852 1.537638 CGTGACCTAGATCGATGGGAG 59.462 57.143 0.54 0.00 0.00 4.30
847 853 1.133884 ACGTGACCTAGATCGATGGGA 60.134 52.381 0.54 0.00 0.00 4.37
848 854 1.267261 GACGTGACCTAGATCGATGGG 59.733 57.143 0.54 4.83 0.00 4.00
849 855 1.069838 CGACGTGACCTAGATCGATGG 60.070 57.143 0.54 0.00 34.77 3.51
850 856 1.069838 CCGACGTGACCTAGATCGATG 60.070 57.143 0.54 0.00 34.77 3.84
851 857 1.227639 CCGACGTGACCTAGATCGAT 58.772 55.000 0.00 0.00 34.77 3.59
852 858 1.434622 GCCGACGTGACCTAGATCGA 61.435 60.000 0.00 0.00 34.77 3.59
853 859 1.009900 GCCGACGTGACCTAGATCG 60.010 63.158 0.00 0.00 0.00 3.69
854 860 1.009900 CGCCGACGTGACCTAGATC 60.010 63.158 0.00 0.00 33.53 2.75
855 861 3.108343 CGCCGACGTGACCTAGAT 58.892 61.111 0.00 0.00 33.53 1.98
856 862 3.807538 GCGCCGACGTGACCTAGA 61.808 66.667 0.00 0.00 42.83 2.43
880 886 2.943345 GCATACGAGCGGATTGGCG 61.943 63.158 0.00 0.00 38.18 5.69
881 887 2.607892 GGCATACGAGCGGATTGGC 61.608 63.158 0.00 0.00 34.64 4.52
929 935 2.190578 GAGAGGGGTGAATGGCGG 59.809 66.667 0.00 0.00 0.00 6.13
931 937 2.514824 GCGAGAGGGGTGAATGGC 60.515 66.667 0.00 0.00 0.00 4.40
977 983 2.750637 ACGAGCTCCACGTCCGAT 60.751 61.111 8.47 0.00 39.87 4.18
1147 3140 2.493278 GTTGATTGACCATGGAAGTGGG 59.507 50.000 21.47 0.00 43.77 4.61
1152 3145 5.183530 AGATCAGTTGATTGACCATGGAA 57.816 39.130 21.47 2.96 34.37 3.53
1323 7094 3.488047 CCTTGCACATTCATTGGATCGAC 60.488 47.826 0.00 0.00 0.00 4.20
1331 7102 4.773674 TCAGGAATTCCTTGCACATTCATT 59.226 37.500 24.93 0.00 46.09 2.57
1374 7145 7.122048 TGAATGACCAATGAACATACCCATAA 58.878 34.615 0.00 0.00 0.00 1.90
1388 7159 7.153985 ACGAACAATTGAATTGAATGACCAAT 58.846 30.769 23.37 0.00 42.83 3.16
1536 7308 4.797743 TCTTCTCTGAAGGCAGCTATAGA 58.202 43.478 3.21 0.00 42.01 1.98
1570 7342 5.439721 TGCTTGGACAGATGCATTAGTATT 58.560 37.500 0.00 0.00 0.00 1.89
1601 7373 4.042187 ACCTGTCCTCAAAGACTAGCAAAT 59.958 41.667 0.00 0.00 37.66 2.32
1616 7390 0.469331 TCCTGTCGTCAACCTGTCCT 60.469 55.000 0.00 0.00 0.00 3.85
1667 7441 2.352127 GCAAACTTCCTCATGCTTGGAC 60.352 50.000 0.00 0.00 35.93 4.02
1701 7475 1.372997 CCTGTCGTCAACCTGTCCG 60.373 63.158 0.00 0.00 0.00 4.79
1721 7495 8.842280 GTCCTAGTATCTTATATTCCGATCAGG 58.158 40.741 0.00 0.00 42.97 3.86
1771 7545 1.605712 CGGAGAGTGGTGGTGAAGAAC 60.606 57.143 0.00 0.00 0.00 3.01
1939 7713 4.753107 CGTACAAATACCAGAACCACAACT 59.247 41.667 0.00 0.00 0.00 3.16
1964 7738 2.287644 GCCTGGTGAACAATTTGCAAAC 59.712 45.455 15.41 1.57 0.00 2.93
1967 7741 0.392336 GGCCTGGTGAACAATTTGCA 59.608 50.000 0.00 0.00 0.00 4.08
2085 7860 9.291664 CTTCGAGGACAACTATAAGTAAAAGAG 57.708 37.037 0.00 0.00 0.00 2.85
2089 7864 7.707624 TCCTTCGAGGACAACTATAAGTAAA 57.292 36.000 0.00 0.00 40.06 2.01
2108 7883 6.961361 ATCCTCCCTATTATTTCCTCCTTC 57.039 41.667 0.00 0.00 0.00 3.46
2165 7940 2.354704 GCTTAGCTGTCCATGGTGTACA 60.355 50.000 12.58 8.14 0.00 2.90
2172 7947 1.927174 GTGTACGCTTAGCTGTCCATG 59.073 52.381 1.76 0.00 0.00 3.66
2215 7990 9.480053 AGAACCAACACAAAATCATAAATTGAG 57.520 29.630 0.00 0.00 37.89 3.02
2229 8004 4.019858 TCAAACCATCAGAACCAACACAA 58.980 39.130 0.00 0.00 0.00 3.33
2281 8056 8.122330 TGCATAACTGAATTGAAGTAATTAGCG 58.878 33.333 0.00 0.00 39.06 4.26
2313 8088 9.360093 AGATCAGAGTTAATAGTTCGTTTTCTG 57.640 33.333 0.00 0.00 0.00 3.02
2359 8143 5.344743 TGTTGAGCCAAACCACATTAAAA 57.655 34.783 0.00 0.00 0.00 1.52
2609 8394 1.228306 TAACCGCCACCACTTTGGG 60.228 57.895 0.00 0.00 43.37 4.12
2644 8429 9.651913 CCTTAAATAATTTAAACTGCACACCAT 57.348 29.630 0.00 0.00 34.93 3.55
2795 8584 5.193099 AGTATTGCCTGTATCCCAAAACT 57.807 39.130 0.00 0.00 0.00 2.66
2897 8686 8.321005 CACATGTTGATTGTACTATGTAGTTCG 58.679 37.037 0.00 0.00 37.73 3.95
2937 8726 8.217111 TGCATAACATGGAATTATAGGACAAGA 58.783 33.333 0.00 0.00 0.00 3.02
3001 8790 6.768861 TGGAAGGAGTTCGATTAAGTTTTTGA 59.231 34.615 0.00 0.00 32.92 2.69
3314 9159 2.121963 TGCACTTCCACCCCCTCT 60.122 61.111 0.00 0.00 0.00 3.69
3315 9160 2.034221 GTGCACTTCCACCCCCTC 59.966 66.667 10.32 0.00 0.00 4.30
3375 9220 1.667236 TCGGCGCATTTGAAGATGAT 58.333 45.000 10.83 0.00 0.00 2.45
3515 9391 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3516 9392 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3517 9393 3.577805 AATATTTGGGAACGGAGGGAG 57.422 47.619 0.00 0.00 0.00 4.30
3518 9394 3.010808 ACAAATATTTGGGAACGGAGGGA 59.989 43.478 27.43 0.00 42.34 4.20
3519 9395 3.361786 ACAAATATTTGGGAACGGAGGG 58.638 45.455 27.43 3.22 42.34 4.30
3520 9396 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
3521 9397 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
3522 9398 6.658188 AAAAGACAAATATTTGGGAACGGA 57.342 33.333 27.43 0.00 42.34 4.69
3523 9399 8.301002 TCTAAAAAGACAAATATTTGGGAACGG 58.699 33.333 27.43 12.94 42.34 4.44
3524 9400 9.341899 CTCTAAAAAGACAAATATTTGGGAACG 57.658 33.333 27.43 11.14 42.34 3.95
3544 9420 9.567776 TGTGGTAGTTCATTTGAAATCTCTAAA 57.432 29.630 0.00 0.00 35.58 1.85
3545 9421 9.739276 ATGTGGTAGTTCATTTGAAATCTCTAA 57.261 29.630 0.00 0.00 35.58 2.10
3547 9423 9.167311 GTATGTGGTAGTTCATTTGAAATCTCT 57.833 33.333 0.00 0.00 35.58 3.10
3548 9424 8.116753 CGTATGTGGTAGTTCATTTGAAATCTC 58.883 37.037 0.00 0.00 35.58 2.75
3549 9425 7.822334 TCGTATGTGGTAGTTCATTTGAAATCT 59.178 33.333 0.00 0.00 35.58 2.40
3550 9426 7.970384 TCGTATGTGGTAGTTCATTTGAAATC 58.030 34.615 0.00 0.00 35.58 2.17
3551 9427 7.915293 TCGTATGTGGTAGTTCATTTGAAAT 57.085 32.000 0.00 0.00 35.58 2.17
3552 9428 7.731882 TTCGTATGTGGTAGTTCATTTGAAA 57.268 32.000 0.00 0.00 35.58 2.69
3553 9429 7.389330 ACATTCGTATGTGGTAGTTCATTTGAA 59.611 33.333 6.89 0.00 43.29 2.69
3554 9430 6.876789 ACATTCGTATGTGGTAGTTCATTTGA 59.123 34.615 6.89 0.00 43.29 2.69
3555 9431 7.072177 ACATTCGTATGTGGTAGTTCATTTG 57.928 36.000 6.89 0.00 43.29 2.32
3556 9432 8.958119 ATACATTCGTATGTGGTAGTTCATTT 57.042 30.769 16.91 0.00 44.56 2.32
3562 9438 9.511272 TGTCTATATACATTCGTATGTGGTAGT 57.489 33.333 16.91 2.71 44.56 2.73
3598 9474 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3599 9475 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3600 9476 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3601 9477 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3602 9478 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3603 9479 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3604 9480 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3605 9481 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3606 9482 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3607 9483 4.260375 GCTACATACGGAGCAAAATGAGTG 60.260 45.833 0.00 0.00 38.62 3.51
3608 9484 3.871594 GCTACATACGGAGCAAAATGAGT 59.128 43.478 0.00 0.00 38.62 3.41
3609 9485 3.248602 GGCTACATACGGAGCAAAATGAG 59.751 47.826 0.00 0.00 40.64 2.90
3610 9486 3.202906 GGCTACATACGGAGCAAAATGA 58.797 45.455 0.00 0.00 40.64 2.57
3611 9487 2.942376 TGGCTACATACGGAGCAAAATG 59.058 45.455 0.00 0.00 40.64 2.32
3612 9488 2.943033 GTGGCTACATACGGAGCAAAAT 59.057 45.455 0.00 0.00 40.64 1.82
3613 9489 2.027561 AGTGGCTACATACGGAGCAAAA 60.028 45.455 2.02 0.00 40.64 2.44
3614 9490 1.553248 AGTGGCTACATACGGAGCAAA 59.447 47.619 2.02 0.00 40.64 3.68
3615 9491 1.191535 AGTGGCTACATACGGAGCAA 58.808 50.000 2.02 0.00 40.64 3.91
3616 9492 1.134818 CAAGTGGCTACATACGGAGCA 60.135 52.381 2.02 0.00 40.64 4.26
3617 9493 1.134788 ACAAGTGGCTACATACGGAGC 60.135 52.381 2.02 0.00 38.00 4.70
3618 9494 2.930040 CAACAAGTGGCTACATACGGAG 59.070 50.000 2.02 0.00 0.00 4.63
3619 9495 2.933492 GCAACAAGTGGCTACATACGGA 60.933 50.000 2.02 0.00 0.00 4.69
3620 9496 1.396996 GCAACAAGTGGCTACATACGG 59.603 52.381 2.02 0.00 0.00 4.02
3621 9497 2.073056 TGCAACAAGTGGCTACATACG 58.927 47.619 2.02 0.00 0.00 3.06
3622 9498 4.396166 AGATTGCAACAAGTGGCTACATAC 59.604 41.667 0.00 0.00 0.00 2.39
3623 9499 4.588899 AGATTGCAACAAGTGGCTACATA 58.411 39.130 0.00 0.00 0.00 2.29
3624 9500 3.424703 AGATTGCAACAAGTGGCTACAT 58.575 40.909 0.00 0.00 0.00 2.29
3625 9501 2.813754 GAGATTGCAACAAGTGGCTACA 59.186 45.455 0.00 0.00 0.00 2.74
3626 9502 3.077359 AGAGATTGCAACAAGTGGCTAC 58.923 45.455 0.00 0.00 0.00 3.58
3627 9503 3.423539 AGAGATTGCAACAAGTGGCTA 57.576 42.857 0.00 0.00 0.00 3.93
3628 9504 2.283145 AGAGATTGCAACAAGTGGCT 57.717 45.000 0.00 0.00 0.00 4.75
3629 9505 3.338249 TCTAGAGATTGCAACAAGTGGC 58.662 45.455 0.00 0.00 0.00 5.01
3630 9506 5.702670 TCTTTCTAGAGATTGCAACAAGTGG 59.297 40.000 0.00 0.00 0.00 4.00
3631 9507 6.203530 TGTCTTTCTAGAGATTGCAACAAGTG 59.796 38.462 0.00 0.00 0.00 3.16
3632 9508 6.291377 TGTCTTTCTAGAGATTGCAACAAGT 58.709 36.000 0.00 0.00 0.00 3.16
3633 9509 6.791887 TGTCTTTCTAGAGATTGCAACAAG 57.208 37.500 0.00 0.00 0.00 3.16
3634 9510 7.566760 TTTGTCTTTCTAGAGATTGCAACAA 57.433 32.000 0.00 0.00 0.00 2.83
3635 9511 7.750229 ATTTGTCTTTCTAGAGATTGCAACA 57.250 32.000 0.00 0.00 0.00 3.33
3645 9521 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3646 9522 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3647 9523 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3648 9524 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3649 9525 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
3650 9526 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
3651 9527 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
3652 9528 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
3653 9529 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
3654 9530 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
3655 9531 7.041984 GCTACTTCCTCCGTTCCTAAATATTTG 60.042 40.741 11.05 1.40 0.00 2.32
3656 9532 6.990939 GCTACTTCCTCCGTTCCTAAATATTT 59.009 38.462 5.89 5.89 0.00 1.40
3657 9533 6.326843 AGCTACTTCCTCCGTTCCTAAATATT 59.673 38.462 0.00 0.00 0.00 1.28
3658 9534 5.839606 AGCTACTTCCTCCGTTCCTAAATAT 59.160 40.000 0.00 0.00 0.00 1.28
3659 9535 5.206587 AGCTACTTCCTCCGTTCCTAAATA 58.793 41.667 0.00 0.00 0.00 1.40
3660 9536 4.031611 AGCTACTTCCTCCGTTCCTAAAT 58.968 43.478 0.00 0.00 0.00 1.40
3661 9537 3.438183 AGCTACTTCCTCCGTTCCTAAA 58.562 45.455 0.00 0.00 0.00 1.85
3662 9538 3.097342 AGCTACTTCCTCCGTTCCTAA 57.903 47.619 0.00 0.00 0.00 2.69
3663 9539 2.822707 AGCTACTTCCTCCGTTCCTA 57.177 50.000 0.00 0.00 0.00 2.94
3664 9540 2.291411 TGTAGCTACTTCCTCCGTTCCT 60.291 50.000 23.84 0.00 0.00 3.36
3665 9541 2.097825 TGTAGCTACTTCCTCCGTTCC 58.902 52.381 23.84 0.00 0.00 3.62
3666 9542 3.015327 TCTGTAGCTACTTCCTCCGTTC 58.985 50.000 23.84 0.00 0.00 3.95
3667 9543 3.083122 TCTGTAGCTACTTCCTCCGTT 57.917 47.619 23.84 0.00 0.00 4.44
3668 9544 2.803030 TCTGTAGCTACTTCCTCCGT 57.197 50.000 23.84 0.00 0.00 4.69
3669 9545 2.223618 GCTTCTGTAGCTACTTCCTCCG 60.224 54.545 23.84 7.79 46.77 4.63
3670 9546 3.446310 GCTTCTGTAGCTACTTCCTCC 57.554 52.381 23.84 5.52 46.77 4.30
3740 9616 7.624360 TTCAGATAAAAGCGTGGTGAATTAT 57.376 32.000 0.00 0.00 0.00 1.28
3854 9730 5.710513 TGTAAAACATCAGCTTGCAATCT 57.289 34.783 0.00 0.00 0.00 2.40
3857 9733 5.840715 TCATTGTAAAACATCAGCTTGCAA 58.159 33.333 0.00 0.00 0.00 4.08
3974 9853 5.113383 ACGTTCTTCTTGTCATACACAACA 58.887 37.500 0.00 0.00 40.29 3.33
3990 9869 1.938016 GCACACGACCCATACGTTCTT 60.938 52.381 0.00 0.00 42.07 2.52
4093 9972 3.561310 GCACATGAATTTCATCGGCTCTA 59.439 43.478 18.02 0.00 34.28 2.43
4095 9974 2.097954 TGCACATGAATTTCATCGGCTC 59.902 45.455 22.45 8.80 34.28 4.70
4189 10068 4.467082 AGCAGATGTCCAAAAATAATGGCA 59.533 37.500 0.00 0.00 37.88 4.92
4197 10078 5.534278 TGTGTTGATAGCAGATGTCCAAAAA 59.466 36.000 0.00 0.00 0.00 1.94
4232 10113 5.630539 GCCTGTTACTGGTTACAATATGGGA 60.631 44.000 9.93 0.00 0.00 4.37
4292 10173 1.621814 TGAACTCCAAAGGTACCTCCG 59.378 52.381 16.64 9.26 41.99 4.63
4294 10175 3.071167 ACACTGAACTCCAAAGGTACCTC 59.929 47.826 16.64 0.18 0.00 3.85
4313 10202 4.229096 CACAAAGCATGTAATGGACACAC 58.771 43.478 0.00 0.00 46.86 3.82
4374 10263 3.414193 CTGCCTCCATGGAGCCCA 61.414 66.667 32.97 27.65 40.69 5.36
4400 10289 4.329545 GGGAGGAGCGCAACACCA 62.330 66.667 11.47 0.00 0.00 4.17
4753 10654 4.489810 TCTGTCGCAACAAACAAACAAAT 58.510 34.783 0.00 0.00 34.24 2.32
4757 10658 5.448926 AATTTCTGTCGCAACAAACAAAC 57.551 34.783 0.00 0.00 34.24 2.93
4761 10662 7.519002 ACTCTATAATTTCTGTCGCAACAAAC 58.481 34.615 0.00 0.00 34.24 2.93
4765 10666 7.061752 ACAACTCTATAATTTCTGTCGCAAC 57.938 36.000 0.00 0.00 0.00 4.17
4772 10673 9.454859 AGAGGGAAAACAACTCTATAATTTCTG 57.545 33.333 0.00 0.00 39.65 3.02
4832 10733 9.030301 GTATTCAAAACCCCGATCATTTAATTG 57.970 33.333 0.00 0.00 0.00 2.32
4874 10775 1.680735 GTGTCAAATGCCTCCAACACA 59.319 47.619 0.00 0.00 37.53 3.72
5099 11000 5.793817 ACAAGCCAAAAATTTCAGTATCCC 58.206 37.500 0.00 0.00 0.00 3.85
5104 11005 6.463995 TCAGTACAAGCCAAAAATTTCAGT 57.536 33.333 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.